**************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-01-01 01:47:32.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-01-01 01:00:49.16 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-01-01 00:47:32.000 Logging started. ---------------------- 2010-01-01 00:47:32.000 BioCASe protocol used. ---------------------- 2010-01-01 00:47:32.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-01-01 00:47:32.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-01-01 00:47:32.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-01 00:47:32.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-01-01 00:47:32.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-01-01 01:00:49.16\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-01-01 01:00:49.16\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-01-01 01:00:49.16\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-01-01 00:47:32.000 Found online debuglevel setting: 1 ---------------------- 2010-01-01 00:47:32.000 Setting debuglevel from 0 to 1 ---------------------- 2010-01-01 00:47:32.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-01-01 00:47:32.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-01-01 00:47:32.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-01-01 00:47:32.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-01-01 00:47:32.000 Pickled file is of latest revision. ---------------------- 2010-01-01 00:47:32.000 Original filter string parsed:
0.1 2010-01-01 01:00:49.16 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-01-01 00:47:32.000 Filter created: None ---------------------- 2010-01-01 00:47:32.000 Compressed filter used: None ---------------------- 2010-01-01 00:47:32.000 Counting total matched records with filter=None ---------------------- 2010-01-01 00:47:32.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-01-01 00:47:32.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-01-01 20:12:50.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-01-01 20:12:49.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString pUIzoNppeI LNUOetATBkHtwqDcz HqTfyFrTayxNWffxrd Joes lPaDdQxIXTgouqeJQz PjdvmEHAZZ XiIFPVfMAQkg GyBtClzDW ksDvGTgjGZZlHSVml Joes
### ERROR LOG The Logging Results: ---------------------- 2010-01-01 19:12:50.000 Logging started. ---------------------- 2010-01-01 19:12:50.000 BioCASe protocol used. ---------------------- 2010-01-01 19:12:50.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-01-01 19:12:50.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-01-01 19:12:50.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-01 19:12:50.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-01-01 19:12:50.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-01-01 20:12:49.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n pUIzoNppeI\n LNUOetATBkHtwqDcz\n HqTfyFrTayxNWffxrd\n Joes\n lPaDdQxIXTgouqeJQz\n PjdvmEHAZZ\n XiIFPVfMAQkg\n GyBtClzDW\n ksDvGTgjGZZlHSVml\n Joes\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-01-01 20:12:49.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n pUIzoNppeI\n LNUOetATBkHtwqDcz\n HqTfyFrTayxNWffxrd\n Joes\n lPaDdQxIXTgouqeJQz\n PjdvmEHAZZ\n XiIFPVfMAQkg\n GyBtClzDW\n ksDvGTgjGZZlHSVml\n Joes\n\n\n\n \n
'} ---------------------- 2010-01-01 19:12:50.000 Found online debuglevel setting: 1 ---------------------- 2010-01-01 19:12:50.000 Setting debuglevel from 0 to 1 ---------------------- 2010-01-01 19:12:50.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-01-01 19:12:50.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-01-01 19:12:50.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-01-01 19:12:50.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-01-01 19:12:51.000 Pickled file is of latest revision. ---------------------- 2010-01-01 19:12:51.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-01-01 19:12:51.000 Original filter string parsed:
2.4.2 2010-01-01 20:12:49.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString pUIzoNppeI LNUOetATBkHtwqDcz HqTfyFrTayxNWffxrd Joes lPaDdQxIXTgouqeJQz PjdvmEHAZZ XiIFPVfMAQkg GyBtClzDW ksDvGTgjGZZlHSVml Joes
---------------------- 2010-01-01 19:12:51.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE pUIzoNppeI ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = LNUOetATBkHtwqDcz ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE HqTfyFrTayxNWffxrd ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Joes ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE lPaDdQxIXTgouqeJQz ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE PjdvmEHAZZ ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE XiIFPVfMAQkg ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = GyBtClzDW ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ksDvGTgjGZZlHSVml ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Joes )) ---------------------- 2010-01-01 19:12:51.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE pUIzoNppeI ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = LNUOetATBkHtwqDcz ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE HqTfyFrTayxNWffxrd ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Joes ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE lPaDdQxIXTgouqeJQz ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE PjdvmEHAZZ ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE XiIFPVfMAQkg ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = GyBtClzDW ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ksDvGTgjGZZlHSVml ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Joes )) ---------------------- 2010-01-01 19:12:51.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE pUIzoNppeI ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = LNUOetATBkHtwqDcz ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE HqTfyFrTayxNWffxrd ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Joes ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE lPaDdQxIXTgouqeJQz ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE PjdvmEHAZZ ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE XiIFPVfMAQkg ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = GyBtClzDW ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ksDvGTgjGZZlHSVml ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Joes )) ---------------------- 2010-01-01 19:12:51.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE pUIzoNppeI ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = LNUOetATBkHtwqDcz ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE HqTfyFrTayxNWffxrd ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Joes ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE lPaDdQxIXTgouqeJQz ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE PjdvmEHAZZ ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE XiIFPVfMAQkg ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = GyBtClzDW ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ksDvGTgjGZZlHSVml ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Joes )) ---------------------- 2010-01-01 19:12:51.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-01-01 19:12:51.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'pUIzoNppeI' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'LNUOetATBkHtwqDcz' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'HqTfyFrTayxNWffxrd' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Joes' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'lPaDdQxIXTgouqeJQz' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'PjdvmEHAZZ' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'XiIFPVfMAQkg' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'GyBtClzDW' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'ksDvGTgjGZZlHSVml' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Joes' ))' ---------------------- 2010-01-01 19:12:51.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "LNUOetATBkHtwqDcz" ---------------------- 2010-01-01 19:12:51.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-01-02 04:30:30.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2010-01-02 03:30:30.000 Logging started. ---------------------- 2010-01-02 03:30:30.000 BioCASe protocol used. ---------------------- 2010-01-02 03:30:30.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-01-02 03:30:30.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-01-02 03:30:30.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-02 03:30:30.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2010-01-02 03:30:30.000 Unknown request type! Default to capabilities. ---------------------- 2010-01-02 03:30:30.000 Destination hostname could not be determined ---------------------- 2010-01-02 03:30:30.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2010-01-02 03:30:30.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2010-01-02 03:30:30.000 Reset CMF convenience cache data hash. ---------------------- 2010-01-02 03:30:30.000 Loading CMF from the source XML file. ---------------------- 2010-01-02 03:30:30.000 CMF Version 2.1 detected. ---------------------- 2010-01-02 03:30:31.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2010-01-02 03:30:31.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2010-01-02 03:30:31.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-01-02 03:30:31.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-01-02 03:30:31.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-01-02 03:30:31.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-01-02 03:30:31.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-01-02 03:30:31.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-01-03 03:49:35.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2010-01-03 02:49:35.000 Logging started. ---------------------- 2010-01-03 02:49:35.000 BioCASe protocol used. ---------------------- 2010-01-03 02:49:35.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-01-03 02:49:35.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-01-03 02:49:35.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-03 02:49:35.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2010-01-03 02:49:35.000 Unknown request type! Default to capabilities. ---------------------- 2010-01-03 02:49:35.000 Destination hostname could not be determined ---------------------- 2010-01-03 02:49:35.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2010-01-03 02:49:35.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2010-01-03 02:49:35.000 Reset CMF convenience cache data hash. ---------------------- 2010-01-03 02:49:35.000 Loading CMF from the source XML file. ---------------------- 2010-01-03 02:49:35.000 CMF Version 2.1 detected. ---------------------- 2010-01-03 02:49:36.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2010-01-03 02:49:36.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2010-01-03 02:49:36.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-01-03 02:49:36.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-01-03 02:49:36.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-01-03 02:49:36.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-01-03 02:49:36.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-01-03 02:49:36.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-01-04 13:35:52.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2010-01-04 12:35:52.000 Logging started. ---------------------- 2010-01-04 12:35:52.000 BioCASe protocol used. ---------------------- 2010-01-04 12:35:52.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-01-04 12:35:52.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-01-04 12:35:52.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-04 12:35:52.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2010-01-04 12:35:52.000 Unknown request type! Default to capabilities. ---------------------- 2010-01-04 12:35:52.000 Destination hostname could not be determined ---------------------- 2010-01-04 12:35:52.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2010-01-04 12:35:52.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2010-01-04 12:35:52.000 Reset CMF convenience cache data hash. ---------------------- 2010-01-04 12:35:52.000 Loading CMF from the source XML file. ---------------------- 2010-01-04 12:35:52.000 CMF Version 2.1 detected. ---------------------- 2010-01-04 12:35:53.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2010-01-04 12:35:53.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2010-01-04 12:35:53.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-01-04 12:35:53.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-01-04 12:35:53.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-01-04 12:35:53.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-01-04 12:35:53.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-01-04 12:35:53.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-01-04 20:52:16.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-01-04 20:52:15.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString ZKGFwzvWQvNAMUYHYY iNwGOHVTLhk SagKLmhCMpuEKaMDRr Michael WxWjQnyRMO AHQDrwjr vhyYUOyVAipkfcf GTelsQvgloIWPgeqqG HRmzHHluNWV Michael
### ERROR LOG The Logging Results: ---------------------- 2010-01-04 19:52:16.000 Logging started. ---------------------- 2010-01-04 19:52:16.000 BioCASe protocol used. ---------------------- 2010-01-04 19:52:16.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-01-04 19:52:16.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-01-04 19:52:16.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-04 19:52:16.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-01-04 19:52:16.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-01-04 20:52:15.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n ZKGFwzvWQvNAMUYHYY\n iNwGOHVTLhk\n SagKLmhCMpuEKaMDRr\n Michael\n WxWjQnyRMO\n AHQDrwjr\n vhyYUOyVAipkfcf\n GTelsQvgloIWPgeqqG\n HRmzHHluNWV\n Michael\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-01-04 20:52:15.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n ZKGFwzvWQvNAMUYHYY\n iNwGOHVTLhk\n SagKLmhCMpuEKaMDRr\n Michael\n WxWjQnyRMO\n AHQDrwjr\n vhyYUOyVAipkfcf\n GTelsQvgloIWPgeqqG\n HRmzHHluNWV\n Michael\n\n\n\n \n
'} ---------------------- 2010-01-04 19:52:16.000 Found online debuglevel setting: 1 ---------------------- 2010-01-04 19:52:16.000 Setting debuglevel from 0 to 1 ---------------------- 2010-01-04 19:52:16.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-01-04 19:52:16.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-01-04 19:52:16.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-01-04 19:52:16.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-01-04 19:52:17.000 Pickled file is of latest revision. ---------------------- 2010-01-04 19:52:17.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-01-04 19:52:17.000 Original filter string parsed:
2.4.2 2010-01-04 20:52:15.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString ZKGFwzvWQvNAMUYHYY iNwGOHVTLhk SagKLmhCMpuEKaMDRr Michael WxWjQnyRMO AHQDrwjr vhyYUOyVAipkfcf GTelsQvgloIWPgeqqG HRmzHHluNWV Michael
---------------------- 2010-01-04 19:52:17.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE ZKGFwzvWQvNAMUYHYY ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = iNwGOHVTLhk ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE SagKLmhCMpuEKaMDRr ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Michael ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE WxWjQnyRMO ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE AHQDrwjr ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE vhyYUOyVAipkfcf ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = GTelsQvgloIWPgeqqG ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = HRmzHHluNWV ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Michael )) ---------------------- 2010-01-04 19:52:17.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE ZKGFwzvWQvNAMUYHYY ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = iNwGOHVTLhk ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE SagKLmhCMpuEKaMDRr ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Michael ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE WxWjQnyRMO ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE AHQDrwjr ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE vhyYUOyVAipkfcf ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = GTelsQvgloIWPgeqqG ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = HRmzHHluNWV ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Michael )) ---------------------- 2010-01-04 19:52:17.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE ZKGFwzvWQvNAMUYHYY ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = iNwGOHVTLhk ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE SagKLmhCMpuEKaMDRr ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Michael ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE WxWjQnyRMO ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE AHQDrwjr ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE vhyYUOyVAipkfcf ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = GTelsQvgloIWPgeqqG ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = HRmzHHluNWV ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Michael )) ---------------------- 2010-01-04 19:52:17.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE ZKGFwzvWQvNAMUYHYY ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = iNwGOHVTLhk ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE SagKLmhCMpuEKaMDRr ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Michael ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE WxWjQnyRMO ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE AHQDrwjr ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE vhyYUOyVAipkfcf ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = GTelsQvgloIWPgeqqG ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = HRmzHHluNWV ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Michael )) ---------------------- 2010-01-04 19:52:17.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-01-04 19:52:17.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'ZKGFwzvWQvNAMUYHYY' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'iNwGOHVTLhk' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'SagKLmhCMpuEKaMDRr' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Michael' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'WxWjQnyRMO' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'AHQDrwjr' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'vhyYUOyVAipkfcf' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'GTelsQvgloIWPgeqqG' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'HRmzHHluNWV' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Michael' ))' ---------------------- 2010-01-04 19:52:17.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "iNwGOHVTLhk" ---------------------- 2010-01-04 19:52:17.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-01-05 02:12:44.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-01-05 02:12:43.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString eMzPBfLjFXOCAK HSXJeioCVc fUImQdeaPQrAJQvEi Joes tbcWuOVbcJEysJDdpJ PHixFLAakj blvWclnphUCIjMHG NyWNvsfy PIBjFXyHVu Joes
### ERROR LOG The Logging Results: ---------------------- 2010-01-05 01:12:44.000 Logging started. ---------------------- 2010-01-05 01:12:44.000 BioCASe protocol used. ---------------------- 2010-01-05 01:12:44.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-01-05 01:12:44.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-01-05 01:12:44.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-05 01:12:44.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-01-05 01:12:44.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-01-05 02:12:43.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n eMzPBfLjFXOCAK\n HSXJeioCVc\n fUImQdeaPQrAJQvEi\n Joes\n tbcWuOVbcJEysJDdpJ\n PHixFLAakj\n blvWclnphUCIjMHG\n NyWNvsfy\n PIBjFXyHVu\n Joes\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-01-05 02:12:43.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n eMzPBfLjFXOCAK\n HSXJeioCVc\n fUImQdeaPQrAJQvEi\n Joes\n tbcWuOVbcJEysJDdpJ\n PHixFLAakj\n blvWclnphUCIjMHG\n NyWNvsfy\n PIBjFXyHVu\n Joes\n\n\n\n \n
'} ---------------------- 2010-01-05 01:12:44.000 Found online debuglevel setting: 1 ---------------------- 2010-01-05 01:12:44.000 Setting debuglevel from 0 to 1 ---------------------- 2010-01-05 01:12:44.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-01-05 01:12:44.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-01-05 01:12:44.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-01-05 01:12:44.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-01-05 01:12:45.000 Pickled file is of latest revision. ---------------------- 2010-01-05 01:12:45.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-01-05 01:12:45.000 Original filter string parsed:
2.4.2 2010-01-05 02:12:43.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString eMzPBfLjFXOCAK HSXJeioCVc fUImQdeaPQrAJQvEi Joes tbcWuOVbcJEysJDdpJ PHixFLAakj blvWclnphUCIjMHG NyWNvsfy PIBjFXyHVu Joes
---------------------- 2010-01-05 01:12:45.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE eMzPBfLjFXOCAK ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = HSXJeioCVc ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE fUImQdeaPQrAJQvEi ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Joes ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE tbcWuOVbcJEysJDdpJ ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE PHixFLAakj ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE blvWclnphUCIjMHG ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = NyWNvsfy ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = PIBjFXyHVu ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Joes )) ---------------------- 2010-01-05 01:12:45.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE eMzPBfLjFXOCAK ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = HSXJeioCVc ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE fUImQdeaPQrAJQvEi ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Joes ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE tbcWuOVbcJEysJDdpJ ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE PHixFLAakj ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE blvWclnphUCIjMHG ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = NyWNvsfy ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = PIBjFXyHVu ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Joes )) ---------------------- 2010-01-05 01:12:45.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE eMzPBfLjFXOCAK ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = HSXJeioCVc ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE fUImQdeaPQrAJQvEi ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Joes ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE tbcWuOVbcJEysJDdpJ ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE PHixFLAakj ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE blvWclnphUCIjMHG ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = NyWNvsfy ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = PIBjFXyHVu ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Joes )) ---------------------- 2010-01-05 01:12:45.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE eMzPBfLjFXOCAK ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = HSXJeioCVc ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE fUImQdeaPQrAJQvEi ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Joes ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE tbcWuOVbcJEysJDdpJ ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE PHixFLAakj ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE blvWclnphUCIjMHG ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = NyWNvsfy ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = PIBjFXyHVu ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Joes )) ---------------------- 2010-01-05 01:12:45.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-01-05 01:12:45.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'eMzPBfLjFXOCAK' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'HSXJeioCVc' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'fUImQdeaPQrAJQvEi' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Joes' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'tbcWuOVbcJEysJDdpJ' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'PHixFLAakj' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'blvWclnphUCIjMHG' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'NyWNvsfy' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'PIBjFXyHVu' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Joes' ))' ---------------------- 2010-01-05 01:12:45.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "HSXJeioCVc" ---------------------- 2010-01-05 01:12:45.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-01-05 12:39:53.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-01-05 12:39:52.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString cHdeBhZaI XrxTirYHieBJSYOf MkywKIKmVuiZCcjm Fish XCrGGEbXkBfHnXZZRya TGZAAcBIopBh QJApNZAHe LHZOhfuaQVbrClVzph EpxjgrnyZJhl Fish
### ERROR LOG The Logging Results: ---------------------- 2010-01-05 11:39:53.000 Logging started. ---------------------- 2010-01-05 11:39:53.000 BioCASe protocol used. ---------------------- 2010-01-05 11:39:53.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-01-05 11:39:53.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-01-05 11:39:53.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-05 11:39:53.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-01-05 11:39:53.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-01-05 12:39:52.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n cHdeBhZaI\n XrxTirYHieBJSYOf\n MkywKIKmVuiZCcjm\n Fish\n XCrGGEbXkBfHnXZZRya\n TGZAAcBIopBh\n QJApNZAHe\n LHZOhfuaQVbrClVzph\n EpxjgrnyZJhl\n Fish\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-01-05 12:39:52.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n cHdeBhZaI\n XrxTirYHieBJSYOf\n MkywKIKmVuiZCcjm\n Fish\n XCrGGEbXkBfHnXZZRya\n TGZAAcBIopBh\n QJApNZAHe\n LHZOhfuaQVbrClVzph\n EpxjgrnyZJhl\n Fish\n\n\n\n \n
'} ---------------------- 2010-01-05 11:39:53.000 Found online debuglevel setting: 1 ---------------------- 2010-01-05 11:39:53.000 Setting debuglevel from 0 to 1 ---------------------- 2010-01-05 11:39:53.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-01-05 11:39:53.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-01-05 11:39:53.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-01-05 11:39:53.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-01-05 11:39:54.000 Pickled file is of latest revision. ---------------------- 2010-01-05 11:39:54.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-01-05 11:39:54.000 Original filter string parsed:
2.4.2 2010-01-05 12:39:52.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString cHdeBhZaI XrxTirYHieBJSYOf MkywKIKmVuiZCcjm Fish XCrGGEbXkBfHnXZZRya TGZAAcBIopBh QJApNZAHe LHZOhfuaQVbrClVzph EpxjgrnyZJhl Fish
---------------------- 2010-01-05 11:39:54.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE cHdeBhZaI ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = XrxTirYHieBJSYOf ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE MkywKIKmVuiZCcjm ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Fish ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE XCrGGEbXkBfHnXZZRya ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE TGZAAcBIopBh ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE QJApNZAHe ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = LHZOhfuaQVbrClVzph ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = EpxjgrnyZJhl ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Fish )) ---------------------- 2010-01-05 11:39:54.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE cHdeBhZaI ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = XrxTirYHieBJSYOf ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE MkywKIKmVuiZCcjm ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Fish ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE XCrGGEbXkBfHnXZZRya ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE TGZAAcBIopBh ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE QJApNZAHe ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = LHZOhfuaQVbrClVzph ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = EpxjgrnyZJhl ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Fish )) ---------------------- 2010-01-05 11:39:54.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE cHdeBhZaI ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = XrxTirYHieBJSYOf ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE MkywKIKmVuiZCcjm ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Fish ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE XCrGGEbXkBfHnXZZRya ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE TGZAAcBIopBh ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE QJApNZAHe ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = LHZOhfuaQVbrClVzph ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = EpxjgrnyZJhl ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Fish )) ---------------------- 2010-01-05 11:39:54.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE cHdeBhZaI ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = XrxTirYHieBJSYOf ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE MkywKIKmVuiZCcjm ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Fish ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE XCrGGEbXkBfHnXZZRya ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE TGZAAcBIopBh ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE QJApNZAHe ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = LHZOhfuaQVbrClVzph ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = EpxjgrnyZJhl ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Fish )) ---------------------- 2010-01-05 11:39:54.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-01-05 11:39:54.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'cHdeBhZaI' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'XrxTirYHieBJSYOf' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'MkywKIKmVuiZCcjm' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Fish' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'XCrGGEbXkBfHnXZZRya' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'TGZAAcBIopBh' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'QJApNZAHe' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'LHZOhfuaQVbrClVzph' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'EpxjgrnyZJhl' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Fish' ))' ---------------------- 2010-01-05 11:39:54.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "XrxTirYHieBJSYOf" ---------------------- 2010-01-05 11:39:54.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-01-05 15:43:53.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-01-05 15:43:52.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString WnvItHreeH FGIoAhtm DqrrKQHxPmc Joe nAmCKKmZuAWiEw GAERCDzYknXnfdGjVvY YWDVtzEO CoHqMKCAbkAey JXQqzUNjpBeEeV Joe
### ERROR LOG The Logging Results: ---------------------- 2010-01-05 14:43:53.000 Logging started. ---------------------- 2010-01-05 14:43:53.000 BioCASe protocol used. ---------------------- 2010-01-05 14:43:53.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-01-05 14:43:53.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-01-05 14:43:53.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-05 14:43:53.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-01-05 14:43:53.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-01-05 15:43:52.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n WnvItHreeH\n FGIoAhtm\n DqrrKQHxPmc\n Joe\n nAmCKKmZuAWiEw\n GAERCDzYknXnfdGjVvY\n YWDVtzEO\n CoHqMKCAbkAey\n JXQqzUNjpBeEeV\n Joe\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-01-05 15:43:52.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n WnvItHreeH\n FGIoAhtm\n DqrrKQHxPmc\n Joe\n nAmCKKmZuAWiEw\n GAERCDzYknXnfdGjVvY\n YWDVtzEO\n CoHqMKCAbkAey\n JXQqzUNjpBeEeV\n Joe\n\n\n\n \n
'} ---------------------- 2010-01-05 14:43:53.000 Found online debuglevel setting: 1 ---------------------- 2010-01-05 14:43:53.000 Setting debuglevel from 0 to 1 ---------------------- 2010-01-05 14:43:53.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-01-05 14:43:53.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-01-05 14:43:53.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-01-05 14:43:53.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-01-05 14:43:54.000 Pickled file is of latest revision. ---------------------- 2010-01-05 14:43:54.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-01-05 14:43:54.000 Original filter string parsed:
2.4.2 2010-01-05 15:43:52.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString WnvItHreeH FGIoAhtm DqrrKQHxPmc Joe nAmCKKmZuAWiEw GAERCDzYknXnfdGjVvY YWDVtzEO CoHqMKCAbkAey JXQqzUNjpBeEeV Joe
---------------------- 2010-01-05 14:43:54.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE WnvItHreeH ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = FGIoAhtm ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE DqrrKQHxPmc ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Joe ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE nAmCKKmZuAWiEw ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE GAERCDzYknXnfdGjVvY ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE YWDVtzEO ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = CoHqMKCAbkAey ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = JXQqzUNjpBeEeV ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Joe )) ---------------------- 2010-01-05 14:43:54.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE WnvItHreeH ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = FGIoAhtm ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE DqrrKQHxPmc ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Joe ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE nAmCKKmZuAWiEw ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE GAERCDzYknXnfdGjVvY ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE YWDVtzEO ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = CoHqMKCAbkAey ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = JXQqzUNjpBeEeV ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Joe )) ---------------------- 2010-01-05 14:43:54.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE WnvItHreeH ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = FGIoAhtm ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE DqrrKQHxPmc ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Joe ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE nAmCKKmZuAWiEw ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE GAERCDzYknXnfdGjVvY ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE YWDVtzEO ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = CoHqMKCAbkAey ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = JXQqzUNjpBeEeV ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Joe )) ---------------------- 2010-01-05 14:43:54.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE WnvItHreeH ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = FGIoAhtm ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE DqrrKQHxPmc ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Joe ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE nAmCKKmZuAWiEw ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE GAERCDzYknXnfdGjVvY ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE YWDVtzEO ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = CoHqMKCAbkAey ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = JXQqzUNjpBeEeV ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Joe )) ---------------------- 2010-01-05 14:43:54.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-01-05 14:43:54.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'WnvItHreeH' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'FGIoAhtm' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'DqrrKQHxPmc' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Joe' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'nAmCKKmZuAWiEw' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'GAERCDzYknXnfdGjVvY' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'YWDVtzEO' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'CoHqMKCAbkAey' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'JXQqzUNjpBeEeV' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Joe' ))' ---------------------- 2010-01-05 14:43:54.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "FGIoAhtm" ---------------------- 2010-01-05 14:43:54.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-01-06 08:33:09.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-01-06 08:33:08.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString BQgtlHMHJy LYRzDFsxGZt rQEWXrxDJgSo Alex tgzCYjqWhiXnQkMjL CnUfMKxzCGXfqL PQdAGuhsMMMMOoeV GNpAMGmaoIZvhddVyhh nNzcCcqLOj Alex
### ERROR LOG The Logging Results: ---------------------- 2010-01-06 07:33:09.000 Logging started. ---------------------- 2010-01-06 07:33:09.000 BioCASe protocol used. ---------------------- 2010-01-06 07:33:09.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-01-06 07:33:09.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-01-06 07:33:09.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-06 07:33:09.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-01-06 07:33:09.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-01-06 08:33:08.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n BQgtlHMHJy\n LYRzDFsxGZt\n rQEWXrxDJgSo\n Alex\n tgzCYjqWhiXnQkMjL\n CnUfMKxzCGXfqL\n PQdAGuhsMMMMOoeV\n GNpAMGmaoIZvhddVyhh\n nNzcCcqLOj\n Alex\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-01-06 08:33:08.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n BQgtlHMHJy\n LYRzDFsxGZt\n rQEWXrxDJgSo\n Alex\n tgzCYjqWhiXnQkMjL\n CnUfMKxzCGXfqL\n PQdAGuhsMMMMOoeV\n GNpAMGmaoIZvhddVyhh\n nNzcCcqLOj\n Alex\n\n\n\n \n
'} ---------------------- 2010-01-06 07:33:09.000 Found online debuglevel setting: 1 ---------------------- 2010-01-06 07:33:09.000 Setting debuglevel from 0 to 1 ---------------------- 2010-01-06 07:33:09.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-01-06 07:33:09.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-01-06 07:33:09.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-01-06 07:33:09.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-01-06 07:33:10.000 Pickled file is of latest revision. ---------------------- 2010-01-06 07:33:10.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-01-06 07:33:10.000 Original filter string parsed:
2.4.2 2010-01-06 08:33:08.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString BQgtlHMHJy LYRzDFsxGZt rQEWXrxDJgSo Alex tgzCYjqWhiXnQkMjL CnUfMKxzCGXfqL PQdAGuhsMMMMOoeV GNpAMGmaoIZvhddVyhh nNzcCcqLOj Alex
---------------------- 2010-01-06 07:33:10.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE BQgtlHMHJy ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = LYRzDFsxGZt ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE rQEWXrxDJgSo ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Alex ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE tgzCYjqWhiXnQkMjL ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE CnUfMKxzCGXfqL ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE PQdAGuhsMMMMOoeV ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = GNpAMGmaoIZvhddVyhh ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = nNzcCcqLOj ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Alex )) ---------------------- 2010-01-06 07:33:10.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE BQgtlHMHJy ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = LYRzDFsxGZt ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE rQEWXrxDJgSo ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Alex ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE tgzCYjqWhiXnQkMjL ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE CnUfMKxzCGXfqL ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE PQdAGuhsMMMMOoeV ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = GNpAMGmaoIZvhddVyhh ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = nNzcCcqLOj ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Alex )) ---------------------- 2010-01-06 07:33:10.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE BQgtlHMHJy ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = LYRzDFsxGZt ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE rQEWXrxDJgSo ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Alex ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE tgzCYjqWhiXnQkMjL ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE CnUfMKxzCGXfqL ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE PQdAGuhsMMMMOoeV ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = GNpAMGmaoIZvhddVyhh ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = nNzcCcqLOj ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Alex )) ---------------------- 2010-01-06 07:33:10.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE BQgtlHMHJy ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = LYRzDFsxGZt ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE rQEWXrxDJgSo ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Alex ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE tgzCYjqWhiXnQkMjL ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE CnUfMKxzCGXfqL ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE PQdAGuhsMMMMOoeV ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = GNpAMGmaoIZvhddVyhh ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = nNzcCcqLOj ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Alex )) ---------------------- 2010-01-06 07:33:10.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-01-06 07:33:10.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'BQgtlHMHJy' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'LYRzDFsxGZt' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'rQEWXrxDJgSo' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Alex' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'tgzCYjqWhiXnQkMjL' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'CnUfMKxzCGXfqL' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'PQdAGuhsMMMMOoeV' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'GNpAMGmaoIZvhddVyhh' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'nNzcCcqLOj' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Alex' ))' ---------------------- 2010-01-06 07:33:10.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "LYRzDFsxGZt" ---------------------- 2010-01-06 07:33:10.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-01-07 02:32:59.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-01-07 02:32:59.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString QEsLjGCENfpbRwb kyHHQoNQP DQBAcUaEc Maggy iZHZyPBgdFnnhKf BvfhwJDCMwOVSymdeN NoBfHMTKuYUji XshIyqREJDw dOVCKroMgsnttjvSlz Maggy
### ERROR LOG The Logging Results: ---------------------- 2010-01-07 01:32:59.000 Logging started. ---------------------- 2010-01-07 01:32:59.000 BioCASe protocol used. ---------------------- 2010-01-07 01:32:59.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-01-07 01:32:59.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-01-07 01:32:59.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-07 01:33:00.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-01-07 01:33:00.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-01-07 02:32:59.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n QEsLjGCENfpbRwb\n kyHHQoNQP\n DQBAcUaEc\n Maggy\n iZHZyPBgdFnnhKf\n BvfhwJDCMwOVSymdeN\n NoBfHMTKuYUji\n XshIyqREJDw\n dOVCKroMgsnttjvSlz\n Maggy\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-01-07 02:32:59.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n QEsLjGCENfpbRwb\n kyHHQoNQP\n DQBAcUaEc\n Maggy\n iZHZyPBgdFnnhKf\n BvfhwJDCMwOVSymdeN\n NoBfHMTKuYUji\n XshIyqREJDw\n dOVCKroMgsnttjvSlz\n Maggy\n\n\n\n \n
'} ---------------------- 2010-01-07 01:33:00.000 Found online debuglevel setting: 1 ---------------------- 2010-01-07 01:33:00.000 Setting debuglevel from 0 to 1 ---------------------- 2010-01-07 01:33:00.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-01-07 01:33:00.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-01-07 01:33:00.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-01-07 01:33:00.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-01-07 01:33:00.000 Pickled file is of latest revision. ---------------------- 2010-01-07 01:33:00.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-01-07 01:33:00.000 Original filter string parsed:
2.4.2 2010-01-07 02:32:59.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString QEsLjGCENfpbRwb kyHHQoNQP DQBAcUaEc Maggy iZHZyPBgdFnnhKf BvfhwJDCMwOVSymdeN NoBfHMTKuYUji XshIyqREJDw dOVCKroMgsnttjvSlz Maggy
---------------------- 2010-01-07 01:33:00.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE QEsLjGCENfpbRwb ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = kyHHQoNQP ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE DQBAcUaEc ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Maggy ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE iZHZyPBgdFnnhKf ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE BvfhwJDCMwOVSymdeN ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE NoBfHMTKuYUji ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = XshIyqREJDw ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = dOVCKroMgsnttjvSlz ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Maggy )) ---------------------- 2010-01-07 01:33:00.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE QEsLjGCENfpbRwb ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = kyHHQoNQP ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE DQBAcUaEc ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Maggy ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE iZHZyPBgdFnnhKf ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE BvfhwJDCMwOVSymdeN ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE NoBfHMTKuYUji ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = XshIyqREJDw ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = dOVCKroMgsnttjvSlz ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Maggy )) ---------------------- 2010-01-07 01:33:00.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE QEsLjGCENfpbRwb ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = kyHHQoNQP ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE DQBAcUaEc ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Maggy ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE iZHZyPBgdFnnhKf ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE BvfhwJDCMwOVSymdeN ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE NoBfHMTKuYUji ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = XshIyqREJDw ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = dOVCKroMgsnttjvSlz ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Maggy )) ---------------------- 2010-01-07 01:33:00.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE QEsLjGCENfpbRwb ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = kyHHQoNQP ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE DQBAcUaEc ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Maggy ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE iZHZyPBgdFnnhKf ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE BvfhwJDCMwOVSymdeN ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE NoBfHMTKuYUji ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = XshIyqREJDw ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = dOVCKroMgsnttjvSlz ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Maggy )) ---------------------- 2010-01-07 01:33:00.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-01-07 01:33:00.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'QEsLjGCENfpbRwb' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'kyHHQoNQP' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'DQBAcUaEc' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Maggy' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'iZHZyPBgdFnnhKf' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'BvfhwJDCMwOVSymdeN' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'NoBfHMTKuYUji' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'XshIyqREJDw' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'dOVCKroMgsnttjvSlz' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Maggy' ))' ---------------------- 2010-01-07 01:33:00.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "kyHHQoNQP" ---------------------- 2010-01-07 01:33:00.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-01-07 05:53:12.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2010-01-07 04:53:12.000 Logging started. ---------------------- 2010-01-07 04:53:12.000 BioCASe protocol used. ---------------------- 2010-01-07 04:53:12.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-01-07 04:53:12.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-01-07 04:53:12.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-07 04:53:12.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2010-01-07 04:53:12.000 Unknown request type! Default to capabilities. ---------------------- 2010-01-07 04:53:12.000 Destination hostname could not be determined ---------------------- 2010-01-07 04:53:12.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2010-01-07 04:53:12.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2010-01-07 04:53:12.000 Reset CMF convenience cache data hash. ---------------------- 2010-01-07 04:53:12.000 Loading CMF from the source XML file. ---------------------- 2010-01-07 04:53:12.000 CMF Version 2.1 detected. ---------------------- 2010-01-07 04:53:13.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2010-01-07 04:53:13.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2010-01-07 04:53:13.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-01-07 04:53:13.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-01-07 04:53:13.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-01-07 04:53:13.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-01-07 04:53:13.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-01-07 04:53:13.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-01-07 13:19:20.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-01-07 13:19:19.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString TYYQmShPgXGhhyGEb IKCWGWjbbmouOYqs GiXFjDwTbNjG Kevin aEhDZUULYe XumsUAclWMylDLmQR OwsbSczi JWTsdaNdTFTBMk ZYfreJxdFZzVQ Kevin
### ERROR LOG The Logging Results: ---------------------- 2010-01-07 12:19:20.000 Logging started. ---------------------- 2010-01-07 12:19:20.000 BioCASe protocol used. ---------------------- 2010-01-07 12:19:20.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-01-07 12:19:20.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-01-07 12:19:20.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-07 12:19:20.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-01-07 12:19:20.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-01-07 13:19:19.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n TYYQmShPgXGhhyGEb\n IKCWGWjbbmouOYqs\n GiXFjDwTbNjG\n Kevin\n aEhDZUULYe\n XumsUAclWMylDLmQR\n OwsbSczi\n JWTsdaNdTFTBMk\n ZYfreJxdFZzVQ\n Kevin\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-01-07 13:19:19.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n TYYQmShPgXGhhyGEb\n IKCWGWjbbmouOYqs\n GiXFjDwTbNjG\n Kevin\n aEhDZUULYe\n XumsUAclWMylDLmQR\n OwsbSczi\n JWTsdaNdTFTBMk\n ZYfreJxdFZzVQ\n Kevin\n\n\n\n \n
'} ---------------------- 2010-01-07 12:19:20.000 Found online debuglevel setting: 1 ---------------------- 2010-01-07 12:19:20.000 Setting debuglevel from 0 to 1 ---------------------- 2010-01-07 12:19:20.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-01-07 12:19:20.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-01-07 12:19:20.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-01-07 12:19:20.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-01-07 12:19:21.000 Pickled file is of latest revision. ---------------------- 2010-01-07 12:19:21.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-01-07 12:19:21.000 Original filter string parsed:
2.4.2 2010-01-07 13:19:19.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString TYYQmShPgXGhhyGEb IKCWGWjbbmouOYqs GiXFjDwTbNjG Kevin aEhDZUULYe XumsUAclWMylDLmQR OwsbSczi JWTsdaNdTFTBMk ZYfreJxdFZzVQ Kevin
---------------------- 2010-01-07 12:19:21.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE TYYQmShPgXGhhyGEb ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = IKCWGWjbbmouOYqs ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE GiXFjDwTbNjG ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Kevin ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE aEhDZUULYe ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE XumsUAclWMylDLmQR ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE OwsbSczi ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = JWTsdaNdTFTBMk ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ZYfreJxdFZzVQ ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Kevin )) ---------------------- 2010-01-07 12:19:21.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE TYYQmShPgXGhhyGEb ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = IKCWGWjbbmouOYqs ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE GiXFjDwTbNjG ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Kevin ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE aEhDZUULYe ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE XumsUAclWMylDLmQR ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE OwsbSczi ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = JWTsdaNdTFTBMk ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ZYfreJxdFZzVQ ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Kevin )) ---------------------- 2010-01-07 12:19:21.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE TYYQmShPgXGhhyGEb ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = IKCWGWjbbmouOYqs ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE GiXFjDwTbNjG ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Kevin ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE aEhDZUULYe ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE XumsUAclWMylDLmQR ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE OwsbSczi ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = JWTsdaNdTFTBMk ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ZYfreJxdFZzVQ ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Kevin )) ---------------------- 2010-01-07 12:19:21.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE TYYQmShPgXGhhyGEb ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = IKCWGWjbbmouOYqs ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE GiXFjDwTbNjG ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Kevin ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE aEhDZUULYe ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE XumsUAclWMylDLmQR ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE OwsbSczi ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = JWTsdaNdTFTBMk ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ZYfreJxdFZzVQ ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Kevin )) ---------------------- 2010-01-07 12:19:21.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-01-07 12:19:21.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'TYYQmShPgXGhhyGEb' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'IKCWGWjbbmouOYqs' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'GiXFjDwTbNjG' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Kevin' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'aEhDZUULYe' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'XumsUAclWMylDLmQR' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'OwsbSczi' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'JWTsdaNdTFTBMk' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'ZYfreJxdFZzVQ' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Kevin' ))' ---------------------- 2010-01-07 12:19:21.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "IKCWGWjbbmouOYqs" ---------------------- 2010-01-07 12:19:21.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-01-07 18:23:37.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-01-07 18:23:36.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString fxfVHZubmepby EPDPpqWEoAApCVqIsxP FWkQTpnjHbPhkR Jeremy ChECpmkxRMml fmMkPzbny zfqWdqOdGPjXddacOht tSDallkPcPGJfTMQLJ WWjnTrfV Jeremy
### ERROR LOG The Logging Results: ---------------------- 2010-01-07 17:23:37.000 Logging started. ---------------------- 2010-01-07 17:23:37.000 BioCASe protocol used. ---------------------- 2010-01-07 17:23:37.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-01-07 17:23:37.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-01-07 17:23:37.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-07 17:23:37.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-01-07 17:23:37.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-01-07 18:23:36.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n fxfVHZubmepby\n EPDPpqWEoAApCVqIsxP\n FWkQTpnjHbPhkR\n Jeremy\n ChECpmkxRMml\n fmMkPzbny\n zfqWdqOdGPjXddacOht\n tSDallkPcPGJfTMQLJ\n WWjnTrfV\n Jeremy\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-01-07 18:23:36.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n fxfVHZubmepby\n EPDPpqWEoAApCVqIsxP\n FWkQTpnjHbPhkR\n Jeremy\n ChECpmkxRMml\n fmMkPzbny\n zfqWdqOdGPjXddacOht\n tSDallkPcPGJfTMQLJ\n WWjnTrfV\n Jeremy\n\n\n\n \n
'} ---------------------- 2010-01-07 17:23:37.000 Found online debuglevel setting: 1 ---------------------- 2010-01-07 17:23:37.000 Setting debuglevel from 0 to 1 ---------------------- 2010-01-07 17:23:37.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-01-07 17:23:37.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-01-07 17:23:37.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-01-07 17:23:37.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-01-07 17:23:37.000 Pickled file is of latest revision. ---------------------- 2010-01-07 17:23:37.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-01-07 17:23:37.000 Original filter string parsed:
2.4.2 2010-01-07 18:23:36.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString fxfVHZubmepby EPDPpqWEoAApCVqIsxP FWkQTpnjHbPhkR Jeremy ChECpmkxRMml fmMkPzbny zfqWdqOdGPjXddacOht tSDallkPcPGJfTMQLJ WWjnTrfV Jeremy
---------------------- 2010-01-07 17:23:37.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE fxfVHZubmepby ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = EPDPpqWEoAApCVqIsxP ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE FWkQTpnjHbPhkR ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Jeremy ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE ChECpmkxRMml ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE fmMkPzbny ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE zfqWdqOdGPjXddacOht ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = tSDallkPcPGJfTMQLJ ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = WWjnTrfV ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Jeremy )) ---------------------- 2010-01-07 17:23:37.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE fxfVHZubmepby ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = EPDPpqWEoAApCVqIsxP ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE FWkQTpnjHbPhkR ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Jeremy ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE ChECpmkxRMml ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE fmMkPzbny ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE zfqWdqOdGPjXddacOht ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = tSDallkPcPGJfTMQLJ ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = WWjnTrfV ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Jeremy )) ---------------------- 2010-01-07 17:23:37.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE fxfVHZubmepby ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = EPDPpqWEoAApCVqIsxP ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE FWkQTpnjHbPhkR ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Jeremy ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE ChECpmkxRMml ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE fmMkPzbny ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE zfqWdqOdGPjXddacOht ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = tSDallkPcPGJfTMQLJ ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = WWjnTrfV ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Jeremy )) ---------------------- 2010-01-07 17:23:37.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE fxfVHZubmepby ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = EPDPpqWEoAApCVqIsxP ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE FWkQTpnjHbPhkR ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Jeremy ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE ChECpmkxRMml ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE fmMkPzbny ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE zfqWdqOdGPjXddacOht ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = tSDallkPcPGJfTMQLJ ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = WWjnTrfV ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Jeremy )) ---------------------- 2010-01-07 17:23:37.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-01-07 17:23:37.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'fxfVHZubmepby' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'EPDPpqWEoAApCVqIsxP' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'FWkQTpnjHbPhkR' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Jeremy' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'ChECpmkxRMml' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'fmMkPzbny' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'zfqWdqOdGPjXddacOht' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'tSDallkPcPGJfTMQLJ' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'WWjnTrfV' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Jeremy' ))' ---------------------- 2010-01-07 17:23:37.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "EPDPpqWEoAApCVqIsxP" ---------------------- 2010-01-07 17:23:37.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-01-08 01:47:09.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-01-08 01:00:48.05 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-01-08 00:47:09.000 Logging started. ---------------------- 2010-01-08 00:47:09.000 BioCASe protocol used. ---------------------- 2010-01-08 00:47:09.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-01-08 00:47:09.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-01-08 00:47:09.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-08 00:47:09.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-01-08 00:47:09.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-01-08 01:00:48.05\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-01-08 01:00:48.05\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-01-08 01:00:48.05\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-01-08 00:47:09.000 Found online debuglevel setting: 1 ---------------------- 2010-01-08 00:47:09.000 Setting debuglevel from 0 to 1 ---------------------- 2010-01-08 00:47:09.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-01-08 00:47:09.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-01-08 00:47:09.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-01-08 00:47:09.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-01-08 00:47:10.000 Pickled file is of latest revision. ---------------------- 2010-01-08 00:47:10.000 Original filter string parsed:
0.1 2010-01-08 01:00:48.05 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-01-08 00:47:10.000 Filter created: None ---------------------- 2010-01-08 00:47:10.000 Compressed filter used: None ---------------------- 2010-01-08 00:47:10.000 Counting total matched records with filter=None ---------------------- 2010-01-08 00:47:10.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-01-08 00:47:10.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-01-08 10:32:36.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-01-08 10:32:35.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString CmeTVlUFPbgLacb mHBUKmcjjHxJP nuBwePZS Michael mRPjLVuDuYEPX PZHKMGlzUD XReeljjgeWQ JxKgEPJGjCbHiOZA sWQwgPVaXaKuhoUn Michael
### ERROR LOG The Logging Results: ---------------------- 2010-01-08 09:32:36.000 Logging started. ---------------------- 2010-01-08 09:32:36.000 BioCASe protocol used. ---------------------- 2010-01-08 09:32:36.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-01-08 09:32:36.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-01-08 09:32:36.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-08 09:32:36.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-01-08 09:32:36.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-01-08 10:32:35.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n CmeTVlUFPbgLacb\n mHBUKmcjjHxJP\n nuBwePZS\n Michael\n mRPjLVuDuYEPX\n PZHKMGlzUD\n XReeljjgeWQ\n JxKgEPJGjCbHiOZA\n sWQwgPVaXaKuhoUn\n Michael\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-01-08 10:32:35.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n CmeTVlUFPbgLacb\n mHBUKmcjjHxJP\n nuBwePZS\n Michael\n mRPjLVuDuYEPX\n PZHKMGlzUD\n XReeljjgeWQ\n JxKgEPJGjCbHiOZA\n sWQwgPVaXaKuhoUn\n Michael\n\n\n\n \n
'} ---------------------- 2010-01-08 09:32:36.000 Found online debuglevel setting: 1 ---------------------- 2010-01-08 09:32:36.000 Setting debuglevel from 0 to 1 ---------------------- 2010-01-08 09:32:36.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-01-08 09:32:36.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-01-08 09:32:36.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-01-08 09:32:36.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-01-08 09:32:37.000 Pickled file is of latest revision. ---------------------- 2010-01-08 09:32:37.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-01-08 09:32:37.000 Original filter string parsed:
2.4.2 2010-01-08 10:32:35.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString CmeTVlUFPbgLacb mHBUKmcjjHxJP nuBwePZS Michael mRPjLVuDuYEPX PZHKMGlzUD XReeljjgeWQ JxKgEPJGjCbHiOZA sWQwgPVaXaKuhoUn Michael
---------------------- 2010-01-08 09:32:37.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE CmeTVlUFPbgLacb ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = mHBUKmcjjHxJP ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE nuBwePZS ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Michael ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE mRPjLVuDuYEPX ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE PZHKMGlzUD ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE XReeljjgeWQ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = JxKgEPJGjCbHiOZA ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = sWQwgPVaXaKuhoUn ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Michael )) ---------------------- 2010-01-08 09:32:37.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE CmeTVlUFPbgLacb ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = mHBUKmcjjHxJP ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE nuBwePZS ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Michael ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE mRPjLVuDuYEPX ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE PZHKMGlzUD ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE XReeljjgeWQ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = JxKgEPJGjCbHiOZA ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = sWQwgPVaXaKuhoUn ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Michael )) ---------------------- 2010-01-08 09:32:37.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE CmeTVlUFPbgLacb ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = mHBUKmcjjHxJP ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE nuBwePZS ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Michael ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE mRPjLVuDuYEPX ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE PZHKMGlzUD ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE XReeljjgeWQ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = JxKgEPJGjCbHiOZA ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = sWQwgPVaXaKuhoUn ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Michael )) ---------------------- 2010-01-08 09:32:37.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE CmeTVlUFPbgLacb ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = mHBUKmcjjHxJP ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE nuBwePZS ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Michael ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE mRPjLVuDuYEPX ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE PZHKMGlzUD ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE XReeljjgeWQ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = JxKgEPJGjCbHiOZA ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = sWQwgPVaXaKuhoUn ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Michael )) ---------------------- 2010-01-08 09:32:37.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-01-08 09:32:37.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'CmeTVlUFPbgLacb' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'mHBUKmcjjHxJP' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'nuBwePZS' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Michael' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'mRPjLVuDuYEPX' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'PZHKMGlzUD' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'XReeljjgeWQ' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'JxKgEPJGjCbHiOZA' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'sWQwgPVaXaKuhoUn' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Michael' ))' ---------------------- 2010-01-08 09:32:37.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "mHBUKmcjjHxJP" ---------------------- 2010-01-08 09:32:37.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-01-08 17:35:43.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-01-08 17:35:43.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString cOvkrkVPoseUaUrZ iRycwzfXYxVnV GqVPJhUWaFRWKP Jonathan FMlaHPKEoJOoMb GbMUDiTPbKU YwnwFWVFzakaKldaK oJlGkMgIBq uvtNqopXnBLAUtqaBC Jonathan
### ERROR LOG The Logging Results: ---------------------- 2010-01-08 16:35:43.000 Logging started. ---------------------- 2010-01-08 16:35:43.000 BioCASe protocol used. ---------------------- 2010-01-08 16:35:43.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-01-08 16:35:43.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-01-08 16:35:43.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-08 16:35:43.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-01-08 16:35:43.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-01-08 17:35:43.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n cOvkrkVPoseUaUrZ\n iRycwzfXYxVnV\n GqVPJhUWaFRWKP\n Jonathan\n FMlaHPKEoJOoMb\n GbMUDiTPbKU\n YwnwFWVFzakaKldaK\n oJlGkMgIBq\n uvtNqopXnBLAUtqaBC\n Jonathan\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-01-08 17:35:43.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n cOvkrkVPoseUaUrZ\n iRycwzfXYxVnV\n GqVPJhUWaFRWKP\n Jonathan\n FMlaHPKEoJOoMb\n GbMUDiTPbKU\n YwnwFWVFzakaKldaK\n oJlGkMgIBq\n uvtNqopXnBLAUtqaBC\n Jonathan\n\n\n\n \n
'} ---------------------- 2010-01-08 16:35:43.000 Found online debuglevel setting: 1 ---------------------- 2010-01-08 16:35:43.000 Setting debuglevel from 0 to 1 ---------------------- 2010-01-08 16:35:43.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-01-08 16:35:43.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-01-08 16:35:43.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-01-08 16:35:43.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-01-08 16:35:44.000 Pickled file is of latest revision. ---------------------- 2010-01-08 16:35:44.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-01-08 16:35:44.000 Original filter string parsed:
2.4.2 2010-01-08 17:35:43.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString cOvkrkVPoseUaUrZ iRycwzfXYxVnV GqVPJhUWaFRWKP Jonathan FMlaHPKEoJOoMb GbMUDiTPbKU YwnwFWVFzakaKldaK oJlGkMgIBq uvtNqopXnBLAUtqaBC Jonathan
---------------------- 2010-01-08 16:35:44.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE cOvkrkVPoseUaUrZ ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = iRycwzfXYxVnV ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE GqVPJhUWaFRWKP ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Jonathan ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE FMlaHPKEoJOoMb ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE GbMUDiTPbKU ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE YwnwFWVFzakaKldaK ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = oJlGkMgIBq ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = uvtNqopXnBLAUtqaBC ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Jonathan )) ---------------------- 2010-01-08 16:35:44.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE cOvkrkVPoseUaUrZ ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = iRycwzfXYxVnV ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE GqVPJhUWaFRWKP ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Jonathan ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE FMlaHPKEoJOoMb ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE GbMUDiTPbKU ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE YwnwFWVFzakaKldaK ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = oJlGkMgIBq ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = uvtNqopXnBLAUtqaBC ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Jonathan )) ---------------------- 2010-01-08 16:35:44.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE cOvkrkVPoseUaUrZ ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = iRycwzfXYxVnV ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE GqVPJhUWaFRWKP ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Jonathan ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE FMlaHPKEoJOoMb ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE GbMUDiTPbKU ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE YwnwFWVFzakaKldaK ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = oJlGkMgIBq ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = uvtNqopXnBLAUtqaBC ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Jonathan )) ---------------------- 2010-01-08 16:35:44.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE cOvkrkVPoseUaUrZ ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = iRycwzfXYxVnV ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE GqVPJhUWaFRWKP ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Jonathan ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE FMlaHPKEoJOoMb ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE GbMUDiTPbKU ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE YwnwFWVFzakaKldaK ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = oJlGkMgIBq ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = uvtNqopXnBLAUtqaBC ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Jonathan )) ---------------------- 2010-01-08 16:35:44.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-01-08 16:35:44.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'cOvkrkVPoseUaUrZ' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'iRycwzfXYxVnV' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'GqVPJhUWaFRWKP' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Jonathan' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'FMlaHPKEoJOoMb' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'GbMUDiTPbKU' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'YwnwFWVFzakaKldaK' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'oJlGkMgIBq' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'uvtNqopXnBLAUtqaBC' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Jonathan' ))' ---------------------- 2010-01-08 16:35:44.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "iRycwzfXYxVnV" ---------------------- 2010-01-08 16:35:44.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-01-08 23:48:41.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-01-08 23:48:41.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString fFyVFXtPY XhwHyvIQtKon ZEHYVKvAmULipLKn Terry RKwAkRkjplbKNYiW pNxdfPdeJ tBCFudAfaOobveUyjwV qBbebemXPR TezQehQP Terry
### ERROR LOG The Logging Results: ---------------------- 2010-01-08 22:48:41.000 Logging started. ---------------------- 2010-01-08 22:48:41.000 BioCASe protocol used. ---------------------- 2010-01-08 22:48:41.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-01-08 22:48:41.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-01-08 22:48:41.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-08 22:48:41.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-01-08 22:48:41.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-01-08 23:48:41.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n fFyVFXtPY\n XhwHyvIQtKon\n ZEHYVKvAmULipLKn\n Terry\n RKwAkRkjplbKNYiW\n pNxdfPdeJ\n tBCFudAfaOobveUyjwV\n qBbebemXPR\n TezQehQP\n Terry\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-01-08 23:48:41.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n fFyVFXtPY\n XhwHyvIQtKon\n ZEHYVKvAmULipLKn\n Terry\n RKwAkRkjplbKNYiW\n pNxdfPdeJ\n tBCFudAfaOobveUyjwV\n qBbebemXPR\n TezQehQP\n Terry\n\n\n\n \n
'} ---------------------- 2010-01-08 22:48:41.000 Found online debuglevel setting: 1 ---------------------- 2010-01-08 22:48:41.000 Setting debuglevel from 0 to 1 ---------------------- 2010-01-08 22:48:41.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-01-08 22:48:41.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-01-08 22:48:41.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-01-08 22:48:41.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-01-08 22:48:42.000 Pickled file is of latest revision. ---------------------- 2010-01-08 22:48:42.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-01-08 22:48:42.000 Original filter string parsed:
2.4.2 2010-01-08 23:48:41.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString fFyVFXtPY XhwHyvIQtKon ZEHYVKvAmULipLKn Terry RKwAkRkjplbKNYiW pNxdfPdeJ tBCFudAfaOobveUyjwV qBbebemXPR TezQehQP Terry
---------------------- 2010-01-08 22:48:42.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE fFyVFXtPY ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = XhwHyvIQtKon ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE ZEHYVKvAmULipLKn ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Terry ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE RKwAkRkjplbKNYiW ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE pNxdfPdeJ ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE tBCFudAfaOobveUyjwV ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = qBbebemXPR ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = TezQehQP ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Terry )) ---------------------- 2010-01-08 22:48:42.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE fFyVFXtPY ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = XhwHyvIQtKon ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE ZEHYVKvAmULipLKn ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Terry ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE RKwAkRkjplbKNYiW ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE pNxdfPdeJ ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE tBCFudAfaOobveUyjwV ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = qBbebemXPR ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = TezQehQP ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Terry )) ---------------------- 2010-01-08 22:48:42.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE fFyVFXtPY ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = XhwHyvIQtKon ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE ZEHYVKvAmULipLKn ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Terry ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE RKwAkRkjplbKNYiW ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE pNxdfPdeJ ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE tBCFudAfaOobveUyjwV ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = qBbebemXPR ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = TezQehQP ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Terry )) ---------------------- 2010-01-08 22:48:42.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE fFyVFXtPY ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = XhwHyvIQtKon ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE ZEHYVKvAmULipLKn ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Terry ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE RKwAkRkjplbKNYiW ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE pNxdfPdeJ ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE tBCFudAfaOobveUyjwV ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = qBbebemXPR ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = TezQehQP ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Terry )) ---------------------- 2010-01-08 22:48:42.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-01-08 22:48:42.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'fFyVFXtPY' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'XhwHyvIQtKon' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'ZEHYVKvAmULipLKn' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Terry' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'RKwAkRkjplbKNYiW' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'pNxdfPdeJ' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'tBCFudAfaOobveUyjwV' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'qBbebemXPR' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'TezQehQP' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Terry' ))' ---------------------- 2010-01-08 22:48:42.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "XhwHyvIQtKon" ---------------------- 2010-01-08 22:48:42.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-01-09 02:45:41.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-01-09 02:45:40.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString mESJDblStSjunXPHOmO VzlmldcAnFVHuS OXftZDum Cory XjRMCDskfRtQlMBEc SshdxtDuPsh qDvoELWHz dusQaeVCXsljzWLCnn ZgxlZJfQJTXcde Cory
### ERROR LOG The Logging Results: ---------------------- 2010-01-09 01:45:41.000 Logging started. ---------------------- 2010-01-09 01:45:41.000 BioCASe protocol used. ---------------------- 2010-01-09 01:45:41.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-01-09 01:45:41.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-01-09 01:45:41.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-09 01:45:41.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-01-09 01:45:41.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-01-09 02:45:40.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n mESJDblStSjunXPHOmO\n VzlmldcAnFVHuS\n OXftZDum\n Cory\n XjRMCDskfRtQlMBEc\n SshdxtDuPsh\n qDvoELWHz\n dusQaeVCXsljzWLCnn\n ZgxlZJfQJTXcde\n Cory\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-01-09 02:45:40.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n mESJDblStSjunXPHOmO\n VzlmldcAnFVHuS\n OXftZDum\n Cory\n XjRMCDskfRtQlMBEc\n SshdxtDuPsh\n qDvoELWHz\n dusQaeVCXsljzWLCnn\n ZgxlZJfQJTXcde\n Cory\n\n\n\n \n
'} ---------------------- 2010-01-09 01:45:41.000 Found online debuglevel setting: 1 ---------------------- 2010-01-09 01:45:41.000 Setting debuglevel from 0 to 1 ---------------------- 2010-01-09 01:45:41.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-01-09 01:45:41.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-01-09 01:45:41.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-01-09 01:45:41.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-01-09 01:45:41.000 Pickled file is of latest revision. ---------------------- 2010-01-09 01:45:41.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-01-09 01:45:41.000 Original filter string parsed:
2.4.2 2010-01-09 02:45:40.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString mESJDblStSjunXPHOmO VzlmldcAnFVHuS OXftZDum Cory XjRMCDskfRtQlMBEc SshdxtDuPsh qDvoELWHz dusQaeVCXsljzWLCnn ZgxlZJfQJTXcde Cory
---------------------- 2010-01-09 01:45:41.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE mESJDblStSjunXPHOmO ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = VzlmldcAnFVHuS ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE OXftZDum ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Cory ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE XjRMCDskfRtQlMBEc ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE SshdxtDuPsh ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE qDvoELWHz ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = dusQaeVCXsljzWLCnn ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ZgxlZJfQJTXcde ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Cory )) ---------------------- 2010-01-09 01:45:41.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE mESJDblStSjunXPHOmO ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = VzlmldcAnFVHuS ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE OXftZDum ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Cory ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE XjRMCDskfRtQlMBEc ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE SshdxtDuPsh ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE qDvoELWHz ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = dusQaeVCXsljzWLCnn ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ZgxlZJfQJTXcde ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Cory )) ---------------------- 2010-01-09 01:45:41.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE mESJDblStSjunXPHOmO ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = VzlmldcAnFVHuS ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE OXftZDum ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Cory ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE XjRMCDskfRtQlMBEc ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE SshdxtDuPsh ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE qDvoELWHz ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = dusQaeVCXsljzWLCnn ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ZgxlZJfQJTXcde ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Cory )) ---------------------- 2010-01-09 01:45:41.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE mESJDblStSjunXPHOmO ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = VzlmldcAnFVHuS ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE OXftZDum ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Cory ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE XjRMCDskfRtQlMBEc ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE SshdxtDuPsh ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE qDvoELWHz ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = dusQaeVCXsljzWLCnn ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ZgxlZJfQJTXcde ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Cory )) ---------------------- 2010-01-09 01:45:41.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-01-09 01:45:41.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'mESJDblStSjunXPHOmO' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'VzlmldcAnFVHuS' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'OXftZDum' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Cory' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'XjRMCDskfRtQlMBEc' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'SshdxtDuPsh' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'qDvoELWHz' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'dusQaeVCXsljzWLCnn' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'ZgxlZJfQJTXcde' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Cory' ))' ---------------------- 2010-01-09 01:45:41.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "VzlmldcAnFVHuS" ---------------------- 2010-01-09 01:45:42.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-01-09 18:48:05.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2010-01-09 17:48:05.000 Logging started. ---------------------- 2010-01-09 17:48:05.000 BioCASe protocol used. ---------------------- 2010-01-09 17:48:05.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-01-09 17:48:05.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-01-09 17:48:05.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-09 17:48:05.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2010-01-09 17:48:05.000 Unknown request type! Default to capabilities. ---------------------- 2010-01-09 17:48:05.000 Destination hostname could not be determined ---------------------- 2010-01-09 17:48:05.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2010-01-09 17:48:05.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2010-01-09 17:48:05.000 Reset CMF convenience cache data hash. ---------------------- 2010-01-09 17:48:05.000 Loading CMF from the source XML file. ---------------------- 2010-01-09 17:48:05.000 CMF Version 2.1 detected. ---------------------- 2010-01-09 17:48:06.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2010-01-09 17:48:06.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2010-01-09 17:48:06.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-01-09 17:48:06.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-01-09 17:48:06.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-01-09 17:48:06.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-01-09 17:48:06.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-01-09 17:48:06.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-01-09 22:29:11.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-01-09 22:29:10.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString MtxHpPdqJWEVLnIj YpshxGNCzYPMCnXWI jwXaZfeFxqu Ryan MollSYqCbfZcjeJ zHJtspiuqePKT QsgigXrvasV hAAJBOIfEs RAynqvvkbD Ryan
### ERROR LOG The Logging Results: ---------------------- 2010-01-09 21:29:11.000 Logging started. ---------------------- 2010-01-09 21:29:11.000 BioCASe protocol used. ---------------------- 2010-01-09 21:29:11.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-01-09 21:29:11.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-01-09 21:29:11.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-09 21:29:11.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-01-09 21:29:11.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-01-09 22:29:10.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n MtxHpPdqJWEVLnIj\n YpshxGNCzYPMCnXWI\n jwXaZfeFxqu\n Ryan\n MollSYqCbfZcjeJ\n zHJtspiuqePKT\n QsgigXrvasV\n hAAJBOIfEs\n RAynqvvkbD\n Ryan\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-01-09 22:29:10.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n MtxHpPdqJWEVLnIj\n YpshxGNCzYPMCnXWI\n jwXaZfeFxqu\n Ryan\n MollSYqCbfZcjeJ\n zHJtspiuqePKT\n QsgigXrvasV\n hAAJBOIfEs\n RAynqvvkbD\n Ryan\n\n\n\n \n
'} ---------------------- 2010-01-09 21:29:11.000 Found online debuglevel setting: 1 ---------------------- 2010-01-09 21:29:11.000 Setting debuglevel from 0 to 1 ---------------------- 2010-01-09 21:29:11.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-01-09 21:29:11.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-01-09 21:29:11.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-01-09 21:29:11.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-01-09 21:29:11.000 Pickled file is of latest revision. ---------------------- 2010-01-09 21:29:11.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-01-09 21:29:11.000 Original filter string parsed:
2.4.2 2010-01-09 22:29:10.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString MtxHpPdqJWEVLnIj YpshxGNCzYPMCnXWI jwXaZfeFxqu Ryan MollSYqCbfZcjeJ zHJtspiuqePKT QsgigXrvasV hAAJBOIfEs RAynqvvkbD Ryan
---------------------- 2010-01-09 21:29:11.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE MtxHpPdqJWEVLnIj ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = YpshxGNCzYPMCnXWI ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE jwXaZfeFxqu ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Ryan ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE MollSYqCbfZcjeJ ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE zHJtspiuqePKT ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE QsgigXrvasV ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = hAAJBOIfEs ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = RAynqvvkbD ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Ryan )) ---------------------- 2010-01-09 21:29:11.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE MtxHpPdqJWEVLnIj ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = YpshxGNCzYPMCnXWI ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE jwXaZfeFxqu ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Ryan ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE MollSYqCbfZcjeJ ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE zHJtspiuqePKT ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE QsgigXrvasV ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = hAAJBOIfEs ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = RAynqvvkbD ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Ryan )) ---------------------- 2010-01-09 21:29:11.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE MtxHpPdqJWEVLnIj ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = YpshxGNCzYPMCnXWI ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE jwXaZfeFxqu ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Ryan ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE MollSYqCbfZcjeJ ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE zHJtspiuqePKT ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE QsgigXrvasV ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = hAAJBOIfEs ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = RAynqvvkbD ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Ryan )) ---------------------- 2010-01-09 21:29:11.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE MtxHpPdqJWEVLnIj ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = YpshxGNCzYPMCnXWI ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE jwXaZfeFxqu ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Ryan ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE MollSYqCbfZcjeJ ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE zHJtspiuqePKT ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE QsgigXrvasV ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = hAAJBOIfEs ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = RAynqvvkbD ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Ryan )) ---------------------- 2010-01-09 21:29:11.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-01-09 21:29:11.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'MtxHpPdqJWEVLnIj' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'YpshxGNCzYPMCnXWI' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'jwXaZfeFxqu' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Ryan' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'MollSYqCbfZcjeJ' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'zHJtspiuqePKT' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'QsgigXrvasV' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'hAAJBOIfEs' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'RAynqvvkbD' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Ryan' ))' ---------------------- 2010-01-09 21:29:11.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "YpshxGNCzYPMCnXWI" ---------------------- 2010-01-09 21:29:11.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-01-10 11:09:44.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-01-10 11:09:44.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString heUnfkSDqgsE LcwqhIgDrwM NeNAfzhYArMEImWTM Jorge eVlHMmib LVmAkzQNoYiRxj nUmkjhFHwOydZVq XftPXONnmkP vOgunnJSVp Jorge
### ERROR LOG The Logging Results: ---------------------- 2010-01-10 10:09:44.000 Logging started. ---------------------- 2010-01-10 10:09:44.000 BioCASe protocol used. ---------------------- 2010-01-10 10:09:44.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-01-10 10:09:44.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-01-10 10:09:44.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-10 10:09:45.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-01-10 10:09:45.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-01-10 11:09:44.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n heUnfkSDqgsE\n LcwqhIgDrwM\n NeNAfzhYArMEImWTM\n Jorge\n eVlHMmib\n LVmAkzQNoYiRxj\n nUmkjhFHwOydZVq\n XftPXONnmkP\n vOgunnJSVp\n Jorge\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-01-10 11:09:44.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n heUnfkSDqgsE\n LcwqhIgDrwM\n NeNAfzhYArMEImWTM\n Jorge\n eVlHMmib\n LVmAkzQNoYiRxj\n nUmkjhFHwOydZVq\n XftPXONnmkP\n vOgunnJSVp\n Jorge\n\n\n\n \n
'} ---------------------- 2010-01-10 10:09:45.000 Found online debuglevel setting: 1 ---------------------- 2010-01-10 10:09:45.000 Setting debuglevel from 0 to 1 ---------------------- 2010-01-10 10:09:45.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-01-10 10:09:45.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-01-10 10:09:45.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-01-10 10:09:45.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-01-10 10:09:45.000 Pickled file is of latest revision. ---------------------- 2010-01-10 10:09:45.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-01-10 10:09:45.000 Original filter string parsed:
2.4.2 2010-01-10 11:09:44.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString heUnfkSDqgsE LcwqhIgDrwM NeNAfzhYArMEImWTM Jorge eVlHMmib LVmAkzQNoYiRxj nUmkjhFHwOydZVq XftPXONnmkP vOgunnJSVp Jorge
---------------------- 2010-01-10 10:09:45.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE heUnfkSDqgsE ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = LcwqhIgDrwM ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE NeNAfzhYArMEImWTM ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Jorge ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE eVlHMmib ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE LVmAkzQNoYiRxj ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE nUmkjhFHwOydZVq ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = XftPXONnmkP ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = vOgunnJSVp ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Jorge )) ---------------------- 2010-01-10 10:09:45.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE heUnfkSDqgsE ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = LcwqhIgDrwM ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE NeNAfzhYArMEImWTM ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Jorge ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE eVlHMmib ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE LVmAkzQNoYiRxj ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE nUmkjhFHwOydZVq ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = XftPXONnmkP ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = vOgunnJSVp ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Jorge )) ---------------------- 2010-01-10 10:09:45.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE heUnfkSDqgsE ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = LcwqhIgDrwM ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE NeNAfzhYArMEImWTM ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Jorge ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE eVlHMmib ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE LVmAkzQNoYiRxj ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE nUmkjhFHwOydZVq ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = XftPXONnmkP ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = vOgunnJSVp ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Jorge )) ---------------------- 2010-01-10 10:09:45.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE heUnfkSDqgsE ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = LcwqhIgDrwM ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE NeNAfzhYArMEImWTM ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Jorge ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE eVlHMmib ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE LVmAkzQNoYiRxj ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE nUmkjhFHwOydZVq ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = XftPXONnmkP ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = vOgunnJSVp ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Jorge )) ---------------------- 2010-01-10 10:09:45.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-01-10 10:09:45.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'heUnfkSDqgsE' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'LcwqhIgDrwM' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'NeNAfzhYArMEImWTM' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Jorge' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'eVlHMmib' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'LVmAkzQNoYiRxj' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'nUmkjhFHwOydZVq' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'XftPXONnmkP' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'vOgunnJSVp' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Jorge' ))' ---------------------- 2010-01-10 10:09:45.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "LcwqhIgDrwM" ---------------------- 2010-01-10 10:09:45.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-01-10 14:09:38.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-01-10 14:09:37.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString NvDXxJilIj dwjNYkWSccw PRVJSizlQuPUFM Justin pNaYrkItYlXvIP KtOWzsIPFyq mKrvJtkMKzTIHSZ tBWuXiwuVHrWoenGOF UeKCmWjzswgbUBUd Justin
### ERROR LOG The Logging Results: ---------------------- 2010-01-10 13:09:38.000 Logging started. ---------------------- 2010-01-10 13:09:38.000 BioCASe protocol used. ---------------------- 2010-01-10 13:09:38.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-01-10 13:09:38.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-01-10 13:09:38.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-10 13:09:38.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-01-10 13:09:38.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-01-10 14:09:37.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n NvDXxJilIj\n dwjNYkWSccw\n PRVJSizlQuPUFM\n Justin\n pNaYrkItYlXvIP\n KtOWzsIPFyq\n mKrvJtkMKzTIHSZ\n tBWuXiwuVHrWoenGOF\n UeKCmWjzswgbUBUd\n Justin\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-01-10 14:09:37.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n NvDXxJilIj\n dwjNYkWSccw\n PRVJSizlQuPUFM\n Justin\n pNaYrkItYlXvIP\n KtOWzsIPFyq\n mKrvJtkMKzTIHSZ\n tBWuXiwuVHrWoenGOF\n UeKCmWjzswgbUBUd\n Justin\n\n\n\n \n
'} ---------------------- 2010-01-10 13:09:38.000 Found online debuglevel setting: 1 ---------------------- 2010-01-10 13:09:38.000 Setting debuglevel from 0 to 1 ---------------------- 2010-01-10 13:09:38.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-01-10 13:09:38.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-01-10 13:09:38.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-01-10 13:09:38.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-01-10 13:09:38.000 Pickled file is of latest revision. ---------------------- 2010-01-10 13:09:38.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-01-10 13:09:38.000 Original filter string parsed:
2.4.2 2010-01-10 14:09:37.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString NvDXxJilIj dwjNYkWSccw PRVJSizlQuPUFM Justin pNaYrkItYlXvIP KtOWzsIPFyq mKrvJtkMKzTIHSZ tBWuXiwuVHrWoenGOF UeKCmWjzswgbUBUd Justin
---------------------- 2010-01-10 13:09:38.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE NvDXxJilIj ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = dwjNYkWSccw ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE PRVJSizlQuPUFM ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Justin ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE pNaYrkItYlXvIP ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE KtOWzsIPFyq ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE mKrvJtkMKzTIHSZ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = tBWuXiwuVHrWoenGOF ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = UeKCmWjzswgbUBUd ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Justin )) ---------------------- 2010-01-10 13:09:38.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE NvDXxJilIj ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = dwjNYkWSccw ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE PRVJSizlQuPUFM ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Justin ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE pNaYrkItYlXvIP ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE KtOWzsIPFyq ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE mKrvJtkMKzTIHSZ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = tBWuXiwuVHrWoenGOF ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = UeKCmWjzswgbUBUd ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Justin )) ---------------------- 2010-01-10 13:09:38.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE NvDXxJilIj ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = dwjNYkWSccw ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE PRVJSizlQuPUFM ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Justin ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE pNaYrkItYlXvIP ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE KtOWzsIPFyq ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE mKrvJtkMKzTIHSZ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = tBWuXiwuVHrWoenGOF ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = UeKCmWjzswgbUBUd ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Justin )) ---------------------- 2010-01-10 13:09:38.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE NvDXxJilIj ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = dwjNYkWSccw ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE PRVJSizlQuPUFM ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Justin ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE pNaYrkItYlXvIP ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE KtOWzsIPFyq ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE mKrvJtkMKzTIHSZ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = tBWuXiwuVHrWoenGOF ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = UeKCmWjzswgbUBUd ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Justin )) ---------------------- 2010-01-10 13:09:38.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-01-10 13:09:38.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'NvDXxJilIj' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'dwjNYkWSccw' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'PRVJSizlQuPUFM' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Justin' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'pNaYrkItYlXvIP' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'KtOWzsIPFyq' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'mKrvJtkMKzTIHSZ' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'tBWuXiwuVHrWoenGOF' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'UeKCmWjzswgbUBUd' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Justin' ))' ---------------------- 2010-01-10 13:09:38.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "dwjNYkWSccw" ---------------------- 2010-01-10 13:09:38.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-01-10 22:24:41.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-01-10 22:24:40.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString mGslZLrwR RAOUUeiDRAku CwcRDCobBiycE Kenneth ebBsTbmxYMIfYHWE jlJCjRXCsYnffA EsubrJMV DYdjzngcqSbpvW qTVbUgWYKqFKwSpd Kenneth
### ERROR LOG The Logging Results: ---------------------- 2010-01-10 21:24:41.000 Logging started. ---------------------- 2010-01-10 21:24:41.000 BioCASe protocol used. ---------------------- 2010-01-10 21:24:41.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-01-10 21:24:41.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-01-10 21:24:41.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-10 21:24:41.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-01-10 21:24:41.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-01-10 22:24:40.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n mGslZLrwR\n RAOUUeiDRAku\n CwcRDCobBiycE\n Kenneth\n ebBsTbmxYMIfYHWE\n jlJCjRXCsYnffA\n EsubrJMV\n DYdjzngcqSbpvW\n qTVbUgWYKqFKwSpd\n Kenneth\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-01-10 22:24:40.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n mGslZLrwR\n RAOUUeiDRAku\n CwcRDCobBiycE\n Kenneth\n ebBsTbmxYMIfYHWE\n jlJCjRXCsYnffA\n EsubrJMV\n DYdjzngcqSbpvW\n qTVbUgWYKqFKwSpd\n Kenneth\n\n\n\n \n
'} ---------------------- 2010-01-10 21:24:41.000 Found online debuglevel setting: 1 ---------------------- 2010-01-10 21:24:41.000 Setting debuglevel from 0 to 1 ---------------------- 2010-01-10 21:24:41.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-01-10 21:24:41.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-01-10 21:24:41.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-01-10 21:24:41.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-01-10 21:24:42.000 Pickled file is of latest revision. ---------------------- 2010-01-10 21:24:42.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-01-10 21:24:42.000 Original filter string parsed:
2.4.2 2010-01-10 22:24:40.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString mGslZLrwR RAOUUeiDRAku CwcRDCobBiycE Kenneth ebBsTbmxYMIfYHWE jlJCjRXCsYnffA EsubrJMV DYdjzngcqSbpvW qTVbUgWYKqFKwSpd Kenneth
---------------------- 2010-01-10 21:24:42.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE mGslZLrwR ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = RAOUUeiDRAku ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE CwcRDCobBiycE ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Kenneth ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE ebBsTbmxYMIfYHWE ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE jlJCjRXCsYnffA ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE EsubrJMV ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = DYdjzngcqSbpvW ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = qTVbUgWYKqFKwSpd ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Kenneth )) ---------------------- 2010-01-10 21:24:42.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE mGslZLrwR ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = RAOUUeiDRAku ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE CwcRDCobBiycE ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Kenneth ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE ebBsTbmxYMIfYHWE ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE jlJCjRXCsYnffA ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE EsubrJMV ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = DYdjzngcqSbpvW ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = qTVbUgWYKqFKwSpd ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Kenneth )) ---------------------- 2010-01-10 21:24:42.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE mGslZLrwR ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = RAOUUeiDRAku ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE CwcRDCobBiycE ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Kenneth ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE ebBsTbmxYMIfYHWE ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE jlJCjRXCsYnffA ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE EsubrJMV ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = DYdjzngcqSbpvW ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = qTVbUgWYKqFKwSpd ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Kenneth )) ---------------------- 2010-01-10 21:24:42.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE mGslZLrwR ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = RAOUUeiDRAku ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE CwcRDCobBiycE ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Kenneth ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE ebBsTbmxYMIfYHWE ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE jlJCjRXCsYnffA ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE EsubrJMV ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = DYdjzngcqSbpvW ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = qTVbUgWYKqFKwSpd ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Kenneth )) ---------------------- 2010-01-10 21:24:42.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-01-10 21:24:42.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'mGslZLrwR' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'RAOUUeiDRAku' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'CwcRDCobBiycE' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Kenneth' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'ebBsTbmxYMIfYHWE' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'jlJCjRXCsYnffA' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'EsubrJMV' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'DYdjzngcqSbpvW' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'qTVbUgWYKqFKwSpd' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Kenneth' ))' ---------------------- 2010-01-10 21:24:42.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "RAOUUeiDRAku" ---------------------- 2010-01-10 21:24:42.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2010-01-11 14:11:56.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2010-01-11 13:11:56.000 Logging started. ---------------------- 2010-01-11 13:11:56.000 BioCASe protocol used. ---------------------- 2010-01-11 13:11:56.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2010-01-11 13:11:56.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2010-01-11 13:11:56.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-11 13:11:56.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2010-01-11 13:11:56.000 Unknown request type! Default to capabilities. ---------------------- 2010-01-11 13:11:56.000 Destination hostname could not be determined ---------------------- 2010-01-11 13:11:56.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2010-01-11 13:11:56.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-01-11 13:11:56.000 Pickled file is of latest revision. ---------------------- 2010-01-11 13:11:56.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2010-01-11 13:11:56.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2010-01-11 13:11:56.000 Reset CMF convenience cache data hash. ---------------------- 2010-01-11 13:11:57.000 Loading CMF from the source XML file. ---------------------- 2010-01-11 13:11:57.000 CMF Version 2.1 detected. ---------------------- 2010-01-11 13:11:57.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2010-01-11 13:11:57.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2010-01-11 13:11:57.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-01-11 13:11:57.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-01-11 13:11:57.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-01-13 01:12:26.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2010-01-13 00:12:26.000 Logging started. ---------------------- 2010-01-13 00:12:26.000 BioCASe protocol used. ---------------------- 2010-01-13 00:12:26.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-01-13 00:12:26.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-01-13 00:12:26.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-13 00:12:26.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2010-01-13 00:12:26.000 Unknown request type! Default to capabilities. ---------------------- 2010-01-13 00:12:26.000 Destination hostname could not be determined ---------------------- 2010-01-13 00:12:26.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2010-01-13 00:12:26.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2010-01-13 00:12:26.000 Reset CMF convenience cache data hash. ---------------------- 2010-01-13 00:12:26.000 Loading CMF from the source XML file. ---------------------- 2010-01-13 00:12:26.000 CMF Version 2.1 detected. ---------------------- 2010-01-13 00:12:27.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2010-01-13 00:12:27.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2010-01-13 00:12:27.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-01-13 00:12:27.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-01-13 00:12:27.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-01-13 00:12:27.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-01-13 00:12:27.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-01-13 00:12:27.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-01-13 14:41:39.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-01-13 14:41:39.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString BUHLqSjVuyMjNtO MCHMrrbAZjrZYFYDSee IduLFAYgDyjKCJc Damion LiaGRZpPVhhzCX rcCtfxujKNlXowTebGA tarqLEvHpnKQB bpwrZWOfbhfKfxvlKcW ztaaFaHf Damion
### ERROR LOG The Logging Results: ---------------------- 2010-01-13 13:41:39.000 Logging started. ---------------------- 2010-01-13 13:41:39.000 BioCASe protocol used. ---------------------- 2010-01-13 13:41:39.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-01-13 13:41:39.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-01-13 13:41:39.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-13 13:41:40.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-01-13 13:41:40.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-01-13 14:41:39.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n BUHLqSjVuyMjNtO\n MCHMrrbAZjrZYFYDSee\n IduLFAYgDyjKCJc\n Damion\n LiaGRZpPVhhzCX\n rcCtfxujKNlXowTebGA\n tarqLEvHpnKQB\n bpwrZWOfbhfKfxvlKcW\n ztaaFaHf\n Damion\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-01-13 14:41:39.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n BUHLqSjVuyMjNtO\n MCHMrrbAZjrZYFYDSee\n IduLFAYgDyjKCJc\n Damion\n LiaGRZpPVhhzCX\n rcCtfxujKNlXowTebGA\n tarqLEvHpnKQB\n bpwrZWOfbhfKfxvlKcW\n ztaaFaHf\n Damion\n\n\n\n \n
'} ---------------------- 2010-01-13 13:41:40.000 Found online debuglevel setting: 1 ---------------------- 2010-01-13 13:41:40.000 Setting debuglevel from 0 to 1 ---------------------- 2010-01-13 13:41:40.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-01-13 13:41:40.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-01-13 13:41:40.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-01-13 13:41:40.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-01-13 13:41:40.000 Pickled file is of latest revision. ---------------------- 2010-01-13 13:41:40.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-01-13 13:41:40.000 Original filter string parsed:
2.4.2 2010-01-13 14:41:39.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString BUHLqSjVuyMjNtO MCHMrrbAZjrZYFYDSee IduLFAYgDyjKCJc Damion LiaGRZpPVhhzCX rcCtfxujKNlXowTebGA tarqLEvHpnKQB bpwrZWOfbhfKfxvlKcW ztaaFaHf Damion
---------------------- 2010-01-13 13:41:40.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE BUHLqSjVuyMjNtO ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = MCHMrrbAZjrZYFYDSee ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE IduLFAYgDyjKCJc ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Damion ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE LiaGRZpPVhhzCX ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE rcCtfxujKNlXowTebGA ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE tarqLEvHpnKQB ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = bpwrZWOfbhfKfxvlKcW ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ztaaFaHf ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Damion )) ---------------------- 2010-01-13 13:41:40.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE BUHLqSjVuyMjNtO ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = MCHMrrbAZjrZYFYDSee ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE IduLFAYgDyjKCJc ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Damion ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE LiaGRZpPVhhzCX ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE rcCtfxujKNlXowTebGA ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE tarqLEvHpnKQB ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = bpwrZWOfbhfKfxvlKcW ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ztaaFaHf ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Damion )) ---------------------- 2010-01-13 13:41:40.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE BUHLqSjVuyMjNtO ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = MCHMrrbAZjrZYFYDSee ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE IduLFAYgDyjKCJc ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Damion ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE LiaGRZpPVhhzCX ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE rcCtfxujKNlXowTebGA ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE tarqLEvHpnKQB ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = bpwrZWOfbhfKfxvlKcW ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ztaaFaHf ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Damion )) ---------------------- 2010-01-13 13:41:40.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE BUHLqSjVuyMjNtO ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = MCHMrrbAZjrZYFYDSee ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE IduLFAYgDyjKCJc ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Damion ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE LiaGRZpPVhhzCX ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE rcCtfxujKNlXowTebGA ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE tarqLEvHpnKQB ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = bpwrZWOfbhfKfxvlKcW ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ztaaFaHf ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Damion )) ---------------------- 2010-01-13 13:41:40.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-01-13 13:41:40.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'BUHLqSjVuyMjNtO' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'MCHMrrbAZjrZYFYDSee' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'IduLFAYgDyjKCJc' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Damion' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'LiaGRZpPVhhzCX' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'rcCtfxujKNlXowTebGA' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'tarqLEvHpnKQB' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'bpwrZWOfbhfKfxvlKcW' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'ztaaFaHf' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Damion' ))' ---------------------- 2010-01-13 13:41:40.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "MCHMrrbAZjrZYFYDSee" ---------------------- 2010-01-13 13:41:40.000 Setting debuglevel from 1 to 3 **************************************** STERNADEMO **************************************** ### ERROR TIME 2010-01-13 15:32:18.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to SternaDemo
2.4.2 2010-01-13 15:32:17.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString *
### ERROR LOG The Logging Results: ---------------------- 2010-01-13 14:32:18.000 Logging started. ---------------------- 2010-01-13 14:32:18.000 BioCASe protocol used. ---------------------- 2010-01-13 14:32:18.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['SternaDemo']} ---------------------- 2010-01-13 14:32:18.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/SternaDemo/provider_setup_file.xml ---------------------- 2010-01-13 14:32:18.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-13 14:32:18.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-01-13 14:32:18.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-01-13 15:32:17.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n*\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-01-13 15:32:17.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n*\n\n\n \n
'} ---------------------- 2010-01-13 14:32:18.000 Found online debuglevel setting: 1 ---------------------- 2010-01-13 14:32:18.000 Setting debuglevel from 0 to 1 ---------------------- 2010-01-13 14:32:18.000 No DB connection could be established. Please verify DB state and connection parameters in your provider_setup_file.xml Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 52, in getOperationsObjectForDBMod module = __import__(modulename, globals(), locals(), 'DBmodule') ImportError: No module named dbmod_ ---------------------- 2010-01-13 14:32:18.000 PRG_WRONG_DBMS: The Providers DBMS is not yet supported or it's database drivers are missing. ---------------------- 2010-01-13 14:32:18.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 75, in doRequest operationObj = getOperationsObjectForDBMod(self.psfObj, self.logObj, self.responseObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 56, in getOperationsObjectForDBMod raise ConnectionError(dbms=psfObj.dbms, log=logObj) ConnectionError: ---------------------- 2010-01-13 14:32:18.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-01-13 21:27:49.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-01-13 21:27:49.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString ofqmPZkBIXWFyadXKi ySlCtKfmgZfsFmVyCwK EfvDzuVOOK David YpjKbqVZTuWgenEAq bbLHRnTy KVPOFXNVGMxuleHYX HnKpCdQinicgfg CIFvAerWxjT David
### ERROR LOG The Logging Results: ---------------------- 2010-01-13 20:27:49.000 Logging started. ---------------------- 2010-01-13 20:27:49.000 BioCASe protocol used. ---------------------- 2010-01-13 20:27:49.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-01-13 20:27:50.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-01-13 20:27:50.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-13 20:27:50.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-01-13 20:27:50.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-01-13 21:27:49.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n ofqmPZkBIXWFyadXKi\n ySlCtKfmgZfsFmVyCwK\n EfvDzuVOOK\n David\n YpjKbqVZTuWgenEAq\n bbLHRnTy\n KVPOFXNVGMxuleHYX\n HnKpCdQinicgfg\n CIFvAerWxjT\n David\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-01-13 21:27:49.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n ofqmPZkBIXWFyadXKi\n ySlCtKfmgZfsFmVyCwK\n EfvDzuVOOK\n David\n YpjKbqVZTuWgenEAq\n bbLHRnTy\n KVPOFXNVGMxuleHYX\n HnKpCdQinicgfg\n CIFvAerWxjT\n David\n\n\n\n \n
'} ---------------------- 2010-01-13 20:27:50.000 Found online debuglevel setting: 1 ---------------------- 2010-01-13 20:27:50.000 Setting debuglevel from 0 to 1 ---------------------- 2010-01-13 20:27:50.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-01-13 20:27:50.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-01-13 20:27:50.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-01-13 20:27:50.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-01-13 20:27:50.000 Pickled file is of latest revision. ---------------------- 2010-01-13 20:27:50.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-01-13 20:27:50.000 Original filter string parsed:
2.4.2 2010-01-13 21:27:49.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString ofqmPZkBIXWFyadXKi ySlCtKfmgZfsFmVyCwK EfvDzuVOOK David YpjKbqVZTuWgenEAq bbLHRnTy KVPOFXNVGMxuleHYX HnKpCdQinicgfg CIFvAerWxjT David
---------------------- 2010-01-13 20:27:50.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE ofqmPZkBIXWFyadXKi ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ySlCtKfmgZfsFmVyCwK ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE EfvDzuVOOK ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE David ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE YpjKbqVZTuWgenEAq ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE bbLHRnTy ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE KVPOFXNVGMxuleHYX ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = HnKpCdQinicgfg ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = CIFvAerWxjT ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE David )) ---------------------- 2010-01-13 20:27:50.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE ofqmPZkBIXWFyadXKi ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ySlCtKfmgZfsFmVyCwK ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE EfvDzuVOOK ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE David ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE YpjKbqVZTuWgenEAq ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE bbLHRnTy ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE KVPOFXNVGMxuleHYX ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = HnKpCdQinicgfg ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = CIFvAerWxjT ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE David )) ---------------------- 2010-01-13 20:27:50.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE ofqmPZkBIXWFyadXKi ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ySlCtKfmgZfsFmVyCwK ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE EfvDzuVOOK ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE David ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE YpjKbqVZTuWgenEAq ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE bbLHRnTy ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE KVPOFXNVGMxuleHYX ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = HnKpCdQinicgfg ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = CIFvAerWxjT ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE David )) ---------------------- 2010-01-13 20:27:50.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE ofqmPZkBIXWFyadXKi ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ySlCtKfmgZfsFmVyCwK ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE EfvDzuVOOK ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE David ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE YpjKbqVZTuWgenEAq ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE bbLHRnTy ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE KVPOFXNVGMxuleHYX ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = HnKpCdQinicgfg ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = CIFvAerWxjT ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE David )) ---------------------- 2010-01-13 20:27:50.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-01-13 20:27:50.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'ofqmPZkBIXWFyadXKi' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'ySlCtKfmgZfsFmVyCwK' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'EfvDzuVOOK' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'David' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'YpjKbqVZTuWgenEAq' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'bbLHRnTy' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'KVPOFXNVGMxuleHYX' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'HnKpCdQinicgfg' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'CIFvAerWxjT' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'David' ))' ---------------------- 2010-01-13 20:27:50.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "ySlCtKfmgZfsFmVyCwK" ---------------------- 2010-01-13 20:27:50.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-01-14 03:33:58.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-01-14 03:33:58.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString xqSnVNhUbBoFsOrxcP oKptWitrLcUGOMT qllnQqxWpcqLv Millard VVoJHdlQWq LJSDqJLPRhaKE pLBiVwQgRA QvVqmTQtoJpps xUHVTjHPNc Millard
### ERROR LOG The Logging Results: ---------------------- 2010-01-14 02:33:58.000 Logging started. ---------------------- 2010-01-14 02:33:58.000 BioCASe protocol used. ---------------------- 2010-01-14 02:33:58.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-01-14 02:33:58.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-01-14 02:33:58.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-14 02:33:58.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-01-14 02:33:58.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-01-14 03:33:58.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n xqSnVNhUbBoFsOrxcP\n oKptWitrLcUGOMT\n qllnQqxWpcqLv\n Millard\n VVoJHdlQWq\n LJSDqJLPRhaKE\n pLBiVwQgRA\n QvVqmTQtoJpps\n xUHVTjHPNc\n Millard\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-01-14 03:33:58.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n xqSnVNhUbBoFsOrxcP\n oKptWitrLcUGOMT\n qllnQqxWpcqLv\n Millard\n VVoJHdlQWq\n LJSDqJLPRhaKE\n pLBiVwQgRA\n QvVqmTQtoJpps\n xUHVTjHPNc\n Millard\n\n\n\n \n
'} ---------------------- 2010-01-14 02:33:58.000 Found online debuglevel setting: 1 ---------------------- 2010-01-14 02:33:58.000 Setting debuglevel from 0 to 1 ---------------------- 2010-01-14 02:33:58.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-01-14 02:33:58.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-01-14 02:33:58.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-01-14 02:33:58.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-01-14 02:33:59.000 Pickled file is of latest revision. ---------------------- 2010-01-14 02:33:59.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-01-14 02:33:59.000 Original filter string parsed:
2.4.2 2010-01-14 03:33:58.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString xqSnVNhUbBoFsOrxcP oKptWitrLcUGOMT qllnQqxWpcqLv Millard VVoJHdlQWq LJSDqJLPRhaKE pLBiVwQgRA QvVqmTQtoJpps xUHVTjHPNc Millard
---------------------- 2010-01-14 02:33:59.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE xqSnVNhUbBoFsOrxcP ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = oKptWitrLcUGOMT ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE qllnQqxWpcqLv ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Millard ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE VVoJHdlQWq ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE LJSDqJLPRhaKE ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE pLBiVwQgRA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = QvVqmTQtoJpps ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = xUHVTjHPNc ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Millard )) ---------------------- 2010-01-14 02:33:59.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE xqSnVNhUbBoFsOrxcP ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = oKptWitrLcUGOMT ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE qllnQqxWpcqLv ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Millard ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE VVoJHdlQWq ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE LJSDqJLPRhaKE ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE pLBiVwQgRA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = QvVqmTQtoJpps ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = xUHVTjHPNc ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Millard )) ---------------------- 2010-01-14 02:33:59.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE xqSnVNhUbBoFsOrxcP ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = oKptWitrLcUGOMT ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE qllnQqxWpcqLv ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Millard ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE VVoJHdlQWq ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE LJSDqJLPRhaKE ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE pLBiVwQgRA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = QvVqmTQtoJpps ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = xUHVTjHPNc ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Millard )) ---------------------- 2010-01-14 02:33:59.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE xqSnVNhUbBoFsOrxcP ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = oKptWitrLcUGOMT ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE qllnQqxWpcqLv ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Millard ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE VVoJHdlQWq ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE LJSDqJLPRhaKE ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE pLBiVwQgRA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = QvVqmTQtoJpps ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = xUHVTjHPNc ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Millard )) ---------------------- 2010-01-14 02:33:59.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-01-14 02:33:59.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'xqSnVNhUbBoFsOrxcP' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'oKptWitrLcUGOMT' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'qllnQqxWpcqLv' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Millard' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'VVoJHdlQWq' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'LJSDqJLPRhaKE' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'pLBiVwQgRA' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'QvVqmTQtoJpps' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'xUHVTjHPNc' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Millard' ))' ---------------------- 2010-01-14 02:33:59.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "oKptWitrLcUGOMT" ---------------------- 2010-01-14 02:33:59.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2010-01-14 06:21:17.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2010-01-14 05:21:17.000 Logging started. ---------------------- 2010-01-14 05:21:17.000 BioCASe protocol used. ---------------------- 2010-01-14 05:21:17.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2010-01-14 05:21:17.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2010-01-14 05:21:17.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-14 05:21:17.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2010-01-14 05:21:17.000 Unknown request type! Default to capabilities. ---------------------- 2010-01-14 05:21:17.000 Destination hostname could not be determined ---------------------- 2010-01-14 05:21:17.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2010-01-14 05:21:17.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-01-14 05:21:17.000 Pickled file is of latest revision. ---------------------- 2010-01-14 05:21:17.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2010-01-14 05:21:17.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2010-01-14 05:21:17.000 Reset CMF convenience cache data hash. ---------------------- 2010-01-14 05:21:17.000 Loading CMF from the source XML file. ---------------------- 2010-01-14 05:21:17.000 CMF Version 2.1 detected. ---------------------- 2010-01-14 05:21:18.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2010-01-14 05:21:18.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2010-01-14 05:21:18.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-01-14 05:21:18.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-01-14 05:21:18.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-01-15 01:46:53.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-01-15 01:00:53.26 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-01-15 00:46:53.000 Logging started. ---------------------- 2010-01-15 00:46:53.000 BioCASe protocol used. ---------------------- 2010-01-15 00:46:53.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-01-15 00:46:53.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-01-15 00:46:53.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-15 00:46:53.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-01-15 00:46:53.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-01-15 01:00:53.26\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-01-15 01:00:53.26\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-01-15 01:00:53.26\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-01-15 00:46:53.000 Found online debuglevel setting: 1 ---------------------- 2010-01-15 00:46:53.000 Setting debuglevel from 0 to 1 ---------------------- 2010-01-15 00:46:53.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-01-15 00:46:53.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-01-15 00:46:53.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-01-15 00:46:53.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-01-15 00:46:53.000 Pickled file is of latest revision. ---------------------- 2010-01-15 00:46:53.000 Original filter string parsed:
0.1 2010-01-15 01:00:53.26 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-01-15 00:46:53.000 Filter created: None ---------------------- 2010-01-15 00:46:53.000 Compressed filter used: None ---------------------- 2010-01-15 00:46:53.000 Counting total matched records with filter=None ---------------------- 2010-01-15 00:46:53.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-01-15 00:46:53.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-01-16 12:36:58.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2010-01-16 11:36:58.000 Logging started. ---------------------- 2010-01-16 11:36:58.000 BioCASe protocol used. ---------------------- 2010-01-16 11:36:58.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-01-16 11:36:58.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-01-16 11:36:58.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-16 11:36:58.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2010-01-16 11:36:58.000 Unknown request type! Default to capabilities. ---------------------- 2010-01-16 11:36:58.000 Destination hostname could not be determined ---------------------- 2010-01-16 11:36:58.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2010-01-16 11:36:58.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2010-01-16 11:36:58.000 Reset CMF convenience cache data hash. ---------------------- 2010-01-16 11:36:58.000 Loading CMF from the source XML file. ---------------------- 2010-01-16 11:36:58.000 CMF Version 2.1 detected. ---------------------- 2010-01-16 11:36:58.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2010-01-16 11:36:58.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2010-01-16 11:36:58.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-01-16 11:36:58.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-01-16 11:36:58.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-01-16 11:36:58.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-01-16 11:36:58.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-01-16 11:36:59.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-01-19 21:03:23.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-01-19 21:03:22.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString GPKjeiMoip LPZkxbJKikDufrmCFh PQvfizHyAByKWj Joseph HfDeBsouFUbZiJGX uvrSMZTfjNJUiqh IYZultIjovWLYA ltYnxKlC oCtvBVbN Joseph
### ERROR LOG The Logging Results: ---------------------- 2010-01-19 20:03:23.000 Logging started. ---------------------- 2010-01-19 20:03:23.000 BioCASe protocol used. ---------------------- 2010-01-19 20:03:23.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-01-19 20:03:23.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-01-19 20:03:23.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-19 20:03:23.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-01-19 20:03:23.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-01-19 21:03:22.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n GPKjeiMoip\n LPZkxbJKikDufrmCFh\n PQvfizHyAByKWj\n Joseph\n HfDeBsouFUbZiJGX\n uvrSMZTfjNJUiqh\n IYZultIjovWLYA\n ltYnxKlC\n oCtvBVbN\n Joseph\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-01-19 21:03:22.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n GPKjeiMoip\n LPZkxbJKikDufrmCFh\n PQvfizHyAByKWj\n Joseph\n HfDeBsouFUbZiJGX\n uvrSMZTfjNJUiqh\n IYZultIjovWLYA\n ltYnxKlC\n oCtvBVbN\n Joseph\n\n\n\n \n
'} ---------------------- 2010-01-19 20:03:23.000 Found online debuglevel setting: 1 ---------------------- 2010-01-19 20:03:23.000 Setting debuglevel from 0 to 1 ---------------------- 2010-01-19 20:03:23.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-01-19 20:03:23.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-01-19 20:03:23.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-01-19 20:03:23.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-01-19 20:03:23.000 Pickled file is of latest revision. ---------------------- 2010-01-19 20:03:23.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-01-19 20:03:23.000 Original filter string parsed:
2.4.2 2010-01-19 21:03:22.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString GPKjeiMoip LPZkxbJKikDufrmCFh PQvfizHyAByKWj Joseph HfDeBsouFUbZiJGX uvrSMZTfjNJUiqh IYZultIjovWLYA ltYnxKlC oCtvBVbN Joseph
---------------------- 2010-01-19 20:03:23.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE GPKjeiMoip ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = LPZkxbJKikDufrmCFh ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE PQvfizHyAByKWj ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Joseph ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE HfDeBsouFUbZiJGX ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE uvrSMZTfjNJUiqh ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE IYZultIjovWLYA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ltYnxKlC ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = oCtvBVbN ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Joseph )) ---------------------- 2010-01-19 20:03:23.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE GPKjeiMoip ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = LPZkxbJKikDufrmCFh ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE PQvfizHyAByKWj ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Joseph ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE HfDeBsouFUbZiJGX ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE uvrSMZTfjNJUiqh ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE IYZultIjovWLYA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ltYnxKlC ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = oCtvBVbN ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Joseph )) ---------------------- 2010-01-19 20:03:23.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE GPKjeiMoip ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = LPZkxbJKikDufrmCFh ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE PQvfizHyAByKWj ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Joseph ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE HfDeBsouFUbZiJGX ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE uvrSMZTfjNJUiqh ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE IYZultIjovWLYA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ltYnxKlC ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = oCtvBVbN ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Joseph )) ---------------------- 2010-01-19 20:03:23.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE GPKjeiMoip ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = LPZkxbJKikDufrmCFh ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE PQvfizHyAByKWj ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Joseph ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE HfDeBsouFUbZiJGX ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE uvrSMZTfjNJUiqh ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE IYZultIjovWLYA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ltYnxKlC ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = oCtvBVbN ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Joseph )) ---------------------- 2010-01-19 20:03:23.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-01-19 20:03:23.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'GPKjeiMoip' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'LPZkxbJKikDufrmCFh' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'PQvfizHyAByKWj' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Joseph' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'HfDeBsouFUbZiJGX' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'uvrSMZTfjNJUiqh' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'IYZultIjovWLYA' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'ltYnxKlC' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'oCtvBVbN' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Joseph' ))' ---------------------- 2010-01-19 20:03:24.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "LPZkxbJKikDufrmCFh" ---------------------- 2010-01-19 20:03:24.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-01-20 05:02:09.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-01-20 05:02:08.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString sSppNldcjTXbwWRs fPESZUQNTr kGzzfxkoukPZmHskYcP Dong NZNuNclbaulVCWmzM FOhhpKQkQEuLyoMtuub nKfVYIkcXJEnxfEI NufKqHPyRwVgAPKb poBureeBtLrcMjnrAD Dong
### ERROR LOG The Logging Results: ---------------------- 2010-01-20 04:02:09.000 Logging started. ---------------------- 2010-01-20 04:02:09.000 BioCASe protocol used. ---------------------- 2010-01-20 04:02:09.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-01-20 04:02:09.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-01-20 04:02:09.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-20 04:02:09.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-01-20 04:02:09.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-01-20 05:02:08.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n sSppNldcjTXbwWRs\n fPESZUQNTr\n kGzzfxkoukPZmHskYcP\n Dong\n NZNuNclbaulVCWmzM\n FOhhpKQkQEuLyoMtuub\n nKfVYIkcXJEnxfEI\n NufKqHPyRwVgAPKb\n poBureeBtLrcMjnrAD\n Dong\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-01-20 05:02:08.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n sSppNldcjTXbwWRs\n fPESZUQNTr\n kGzzfxkoukPZmHskYcP\n Dong\n NZNuNclbaulVCWmzM\n FOhhpKQkQEuLyoMtuub\n nKfVYIkcXJEnxfEI\n NufKqHPyRwVgAPKb\n poBureeBtLrcMjnrAD\n Dong\n\n\n\n \n
'} ---------------------- 2010-01-20 04:02:09.000 Found online debuglevel setting: 1 ---------------------- 2010-01-20 04:02:09.000 Setting debuglevel from 0 to 1 ---------------------- 2010-01-20 04:02:09.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-01-20 04:02:09.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-01-20 04:02:09.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-01-20 04:02:09.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-01-20 04:02:09.000 Pickled file is of latest revision. ---------------------- 2010-01-20 04:02:09.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-01-20 04:02:09.000 Original filter string parsed:
2.4.2 2010-01-20 05:02:08.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString sSppNldcjTXbwWRs fPESZUQNTr kGzzfxkoukPZmHskYcP Dong NZNuNclbaulVCWmzM FOhhpKQkQEuLyoMtuub nKfVYIkcXJEnxfEI NufKqHPyRwVgAPKb poBureeBtLrcMjnrAD Dong
---------------------- 2010-01-20 04:02:09.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE sSppNldcjTXbwWRs ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = fPESZUQNTr ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE kGzzfxkoukPZmHskYcP ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Dong ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE NZNuNclbaulVCWmzM ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE FOhhpKQkQEuLyoMtuub ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE nKfVYIkcXJEnxfEI ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = NufKqHPyRwVgAPKb ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = poBureeBtLrcMjnrAD ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Dong )) ---------------------- 2010-01-20 04:02:09.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE sSppNldcjTXbwWRs ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = fPESZUQNTr ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE kGzzfxkoukPZmHskYcP ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Dong ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE NZNuNclbaulVCWmzM ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE FOhhpKQkQEuLyoMtuub ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE nKfVYIkcXJEnxfEI ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = NufKqHPyRwVgAPKb ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = poBureeBtLrcMjnrAD ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Dong )) ---------------------- 2010-01-20 04:02:09.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE sSppNldcjTXbwWRs ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = fPESZUQNTr ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE kGzzfxkoukPZmHskYcP ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Dong ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE NZNuNclbaulVCWmzM ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE FOhhpKQkQEuLyoMtuub ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE nKfVYIkcXJEnxfEI ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = NufKqHPyRwVgAPKb ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = poBureeBtLrcMjnrAD ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Dong )) ---------------------- 2010-01-20 04:02:09.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE sSppNldcjTXbwWRs ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = fPESZUQNTr ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE kGzzfxkoukPZmHskYcP ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Dong ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE NZNuNclbaulVCWmzM ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE FOhhpKQkQEuLyoMtuub ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE nKfVYIkcXJEnxfEI ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = NufKqHPyRwVgAPKb ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = poBureeBtLrcMjnrAD ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Dong )) ---------------------- 2010-01-20 04:02:09.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-01-20 04:02:09.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'sSppNldcjTXbwWRs' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'fPESZUQNTr' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'kGzzfxkoukPZmHskYcP' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Dong' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'NZNuNclbaulVCWmzM' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'FOhhpKQkQEuLyoMtuub' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'nKfVYIkcXJEnxfEI' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'NufKqHPyRwVgAPKb' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'poBureeBtLrcMjnrAD' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Dong' ))' ---------------------- 2010-01-20 04:02:09.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "fPESZUQNTr" ---------------------- 2010-01-20 04:02:09.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-01-20 14:15:40.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-01-20 14:15:39.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString sTebhDsqeuEyu LJhUzuhpRLSMmtyXQ ALlzXoYjgjAlGtRri Martin CtRMlHADq XrpysSEzrdHjw cGzaxKDvFNbLurHlT teqOpjEKgStjddxH fZLQmylvKpqx Martin
### ERROR LOG The Logging Results: ---------------------- 2010-01-20 13:15:40.000 Logging started. ---------------------- 2010-01-20 13:15:40.000 BioCASe protocol used. ---------------------- 2010-01-20 13:15:40.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-01-20 13:15:40.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-01-20 13:15:40.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-20 13:15:40.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-01-20 13:15:40.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-01-20 14:15:39.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n sTebhDsqeuEyu\n LJhUzuhpRLSMmtyXQ\n ALlzXoYjgjAlGtRri\n Martin\n CtRMlHADq\n XrpysSEzrdHjw\n cGzaxKDvFNbLurHlT\n teqOpjEKgStjddxH\n fZLQmylvKpqx\n Martin\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-01-20 14:15:39.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n sTebhDsqeuEyu\n LJhUzuhpRLSMmtyXQ\n ALlzXoYjgjAlGtRri\n Martin\n CtRMlHADq\n XrpysSEzrdHjw\n cGzaxKDvFNbLurHlT\n teqOpjEKgStjddxH\n fZLQmylvKpqx\n Martin\n\n\n\n \n
'} ---------------------- 2010-01-20 13:15:40.000 Found online debuglevel setting: 1 ---------------------- 2010-01-20 13:15:40.000 Setting debuglevel from 0 to 1 ---------------------- 2010-01-20 13:15:40.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-01-20 13:15:40.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-01-20 13:15:40.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-01-20 13:15:40.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-01-20 13:15:40.000 Pickled file is of latest revision. ---------------------- 2010-01-20 13:15:40.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-01-20 13:15:40.000 Original filter string parsed:
2.4.2 2010-01-20 14:15:39.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString sTebhDsqeuEyu LJhUzuhpRLSMmtyXQ ALlzXoYjgjAlGtRri Martin CtRMlHADq XrpysSEzrdHjw cGzaxKDvFNbLurHlT teqOpjEKgStjddxH fZLQmylvKpqx Martin
---------------------- 2010-01-20 13:15:40.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE sTebhDsqeuEyu ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = LJhUzuhpRLSMmtyXQ ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE ALlzXoYjgjAlGtRri ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Martin ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE CtRMlHADq ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE XrpysSEzrdHjw ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE cGzaxKDvFNbLurHlT ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = teqOpjEKgStjddxH ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = fZLQmylvKpqx ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Martin )) ---------------------- 2010-01-20 13:15:40.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE sTebhDsqeuEyu ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = LJhUzuhpRLSMmtyXQ ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE ALlzXoYjgjAlGtRri ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Martin ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE CtRMlHADq ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE XrpysSEzrdHjw ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE cGzaxKDvFNbLurHlT ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = teqOpjEKgStjddxH ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = fZLQmylvKpqx ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Martin )) ---------------------- 2010-01-20 13:15:40.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE sTebhDsqeuEyu ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = LJhUzuhpRLSMmtyXQ ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE ALlzXoYjgjAlGtRri ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Martin ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE CtRMlHADq ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE XrpysSEzrdHjw ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE cGzaxKDvFNbLurHlT ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = teqOpjEKgStjddxH ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = fZLQmylvKpqx ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Martin )) ---------------------- 2010-01-20 13:15:40.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE sTebhDsqeuEyu ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = LJhUzuhpRLSMmtyXQ ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE ALlzXoYjgjAlGtRri ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Martin ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE CtRMlHADq ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE XrpysSEzrdHjw ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE cGzaxKDvFNbLurHlT ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = teqOpjEKgStjddxH ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = fZLQmylvKpqx ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Martin )) ---------------------- 2010-01-20 13:15:40.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-01-20 13:15:40.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'sTebhDsqeuEyu' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'LJhUzuhpRLSMmtyXQ' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'ALlzXoYjgjAlGtRri' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Martin' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'CtRMlHADq' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'XrpysSEzrdHjw' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'cGzaxKDvFNbLurHlT' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'teqOpjEKgStjddxH' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'fZLQmylvKpqx' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Martin' ))' ---------------------- 2010-01-20 13:15:40.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "LJhUzuhpRLSMmtyXQ" ---------------------- 2010-01-20 13:15:40.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-01-20 22:10:36.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-01-20 22:10:36.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString ErRGBeptOZUfCKpUVFP PmgZYbzGtoBQQ USYrcDtpDRtGFERD Walter bExJhdPgJrqysS WvuyuZSxLaZDfJp OoHyRtdKyBEShLOue LhDhQKrY wGxzfPaKfczwf Walter
### ERROR LOG The Logging Results: ---------------------- 2010-01-20 21:10:36.000 Logging started. ---------------------- 2010-01-20 21:10:36.000 BioCASe protocol used. ---------------------- 2010-01-20 21:10:36.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-01-20 21:10:36.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-01-20 21:10:36.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-20 21:10:36.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-01-20 21:10:36.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-01-20 22:10:36.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n ErRGBeptOZUfCKpUVFP\n PmgZYbzGtoBQQ\n USYrcDtpDRtGFERD\n Walter\n bExJhdPgJrqysS\n WvuyuZSxLaZDfJp\n OoHyRtdKyBEShLOue\n LhDhQKrY\n wGxzfPaKfczwf\n Walter\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-01-20 22:10:36.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n ErRGBeptOZUfCKpUVFP\n PmgZYbzGtoBQQ\n USYrcDtpDRtGFERD\n Walter\n bExJhdPgJrqysS\n WvuyuZSxLaZDfJp\n OoHyRtdKyBEShLOue\n LhDhQKrY\n wGxzfPaKfczwf\n Walter\n\n\n\n \n
'} ---------------------- 2010-01-20 21:10:36.000 Found online debuglevel setting: 1 ---------------------- 2010-01-20 21:10:36.000 Setting debuglevel from 0 to 1 ---------------------- 2010-01-20 21:10:36.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-01-20 21:10:36.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-01-20 21:10:36.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-01-20 21:10:36.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-01-20 21:10:37.000 Pickled file is of latest revision. ---------------------- 2010-01-20 21:10:37.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-01-20 21:10:37.000 Original filter string parsed:
2.4.2 2010-01-20 22:10:36.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString ErRGBeptOZUfCKpUVFP PmgZYbzGtoBQQ USYrcDtpDRtGFERD Walter bExJhdPgJrqysS WvuyuZSxLaZDfJp OoHyRtdKyBEShLOue LhDhQKrY wGxzfPaKfczwf Walter
---------------------- 2010-01-20 21:10:37.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE ErRGBeptOZUfCKpUVFP ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = PmgZYbzGtoBQQ ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USYrcDtpDRtGFERD ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Walter ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE bExJhdPgJrqysS ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE WvuyuZSxLaZDfJp ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE OoHyRtdKyBEShLOue ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = LhDhQKrY ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = wGxzfPaKfczwf ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Walter )) ---------------------- 2010-01-20 21:10:37.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE ErRGBeptOZUfCKpUVFP ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = PmgZYbzGtoBQQ ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USYrcDtpDRtGFERD ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Walter ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE bExJhdPgJrqysS ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE WvuyuZSxLaZDfJp ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE OoHyRtdKyBEShLOue ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = LhDhQKrY ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = wGxzfPaKfczwf ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Walter )) ---------------------- 2010-01-20 21:10:37.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE ErRGBeptOZUfCKpUVFP ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = PmgZYbzGtoBQQ ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USYrcDtpDRtGFERD ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Walter ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE bExJhdPgJrqysS ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE WvuyuZSxLaZDfJp ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE OoHyRtdKyBEShLOue ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = LhDhQKrY ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = wGxzfPaKfczwf ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Walter )) ---------------------- 2010-01-20 21:10:37.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE ErRGBeptOZUfCKpUVFP ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = PmgZYbzGtoBQQ ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USYrcDtpDRtGFERD ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Walter ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE bExJhdPgJrqysS ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE WvuyuZSxLaZDfJp ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE OoHyRtdKyBEShLOue ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = LhDhQKrY ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = wGxzfPaKfczwf ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Walter )) ---------------------- 2010-01-20 21:10:37.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-01-20 21:10:37.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'ErRGBeptOZUfCKpUVFP' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'PmgZYbzGtoBQQ' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USYrcDtpDRtGFERD' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Walter' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'bExJhdPgJrqysS' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'WvuyuZSxLaZDfJp' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'OoHyRtdKyBEShLOue' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'LhDhQKrY' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'wGxzfPaKfczwf' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Walter' ))' ---------------------- 2010-01-20 21:10:37.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "PmgZYbzGtoBQQ" ---------------------- 2010-01-20 21:10:37.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-01-21 05:30:40.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-01-21 05:30:40.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString GrunrovkDpdRwAO WqULnAVQspJiTNtQH zpnRfZBhvgROGeENCIu Daniel JIZZetmyZPSCpGAp zLsWzTzBWE WndEnWtGcOvHanytDY EkXEMojecUlYG rvnNGnbFmOzwRTSi Daniel
### ERROR LOG The Logging Results: ---------------------- 2010-01-21 04:30:40.000 Logging started. ---------------------- 2010-01-21 04:30:40.000 BioCASe protocol used. ---------------------- 2010-01-21 04:30:40.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-01-21 04:30:40.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-01-21 04:30:40.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-21 04:30:40.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-01-21 04:30:40.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-01-21 05:30:40.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n GrunrovkDpdRwAO\n WqULnAVQspJiTNtQH\n zpnRfZBhvgROGeENCIu\n Daniel\n JIZZetmyZPSCpGAp\n zLsWzTzBWE\n WndEnWtGcOvHanytDY\n EkXEMojecUlYG\n rvnNGnbFmOzwRTSi\n Daniel\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-01-21 05:30:40.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n GrunrovkDpdRwAO\n WqULnAVQspJiTNtQH\n zpnRfZBhvgROGeENCIu\n Daniel\n JIZZetmyZPSCpGAp\n zLsWzTzBWE\n WndEnWtGcOvHanytDY\n EkXEMojecUlYG\n rvnNGnbFmOzwRTSi\n Daniel\n\n\n\n \n
'} ---------------------- 2010-01-21 04:30:40.000 Found online debuglevel setting: 1 ---------------------- 2010-01-21 04:30:40.000 Setting debuglevel from 0 to 1 ---------------------- 2010-01-21 04:30:40.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-01-21 04:30:40.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-01-21 04:30:40.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-01-21 04:30:40.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-01-21 04:30:41.000 Pickled file is of latest revision. ---------------------- 2010-01-21 04:30:41.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-01-21 04:30:41.000 Original filter string parsed:
2.4.2 2010-01-21 05:30:40.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString GrunrovkDpdRwAO WqULnAVQspJiTNtQH zpnRfZBhvgROGeENCIu Daniel JIZZetmyZPSCpGAp zLsWzTzBWE WndEnWtGcOvHanytDY EkXEMojecUlYG rvnNGnbFmOzwRTSi Daniel
---------------------- 2010-01-21 04:30:41.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE GrunrovkDpdRwAO ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = WqULnAVQspJiTNtQH ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE zpnRfZBhvgROGeENCIu ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Daniel ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE JIZZetmyZPSCpGAp ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE zLsWzTzBWE ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE WndEnWtGcOvHanytDY ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = EkXEMojecUlYG ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = rvnNGnbFmOzwRTSi ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Daniel )) ---------------------- 2010-01-21 04:30:41.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE GrunrovkDpdRwAO ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = WqULnAVQspJiTNtQH ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE zpnRfZBhvgROGeENCIu ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Daniel ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE JIZZetmyZPSCpGAp ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE zLsWzTzBWE ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE WndEnWtGcOvHanytDY ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = EkXEMojecUlYG ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = rvnNGnbFmOzwRTSi ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Daniel )) ---------------------- 2010-01-21 04:30:41.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE GrunrovkDpdRwAO ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = WqULnAVQspJiTNtQH ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE zpnRfZBhvgROGeENCIu ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Daniel ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE JIZZetmyZPSCpGAp ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE zLsWzTzBWE ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE WndEnWtGcOvHanytDY ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = EkXEMojecUlYG ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = rvnNGnbFmOzwRTSi ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Daniel )) ---------------------- 2010-01-21 04:30:41.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE GrunrovkDpdRwAO ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = WqULnAVQspJiTNtQH ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE zpnRfZBhvgROGeENCIu ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Daniel ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE JIZZetmyZPSCpGAp ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE zLsWzTzBWE ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE WndEnWtGcOvHanytDY ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = EkXEMojecUlYG ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = rvnNGnbFmOzwRTSi ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Daniel )) ---------------------- 2010-01-21 04:30:41.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-01-21 04:30:41.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'GrunrovkDpdRwAO' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'WqULnAVQspJiTNtQH' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'zpnRfZBhvgROGeENCIu' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Daniel' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'JIZZetmyZPSCpGAp' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'zLsWzTzBWE' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'WndEnWtGcOvHanytDY' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'EkXEMojecUlYG' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'rvnNGnbFmOzwRTSi' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Daniel' ))' ---------------------- 2010-01-21 04:30:41.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "WqULnAVQspJiTNtQH" ---------------------- 2010-01-21 04:30:41.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-01-21 13:40:15.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-01-21 13:40:14.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString IjZrsOqjuI BsSsvfxvMbkFIj hHFfWptKClumhr Karl PkJqHUyJUbQyeCT AoxHAityDxvYVyM gIhexshFCiZLRWMc GJXrNPdZJEl nNlzyCLcE Karl
### ERROR LOG The Logging Results: ---------------------- 2010-01-21 12:40:15.000 Logging started. ---------------------- 2010-01-21 12:40:15.000 BioCASe protocol used. ---------------------- 2010-01-21 12:40:15.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-01-21 12:40:15.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-01-21 12:40:15.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-21 12:40:15.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-01-21 12:40:15.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-01-21 13:40:14.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n IjZrsOqjuI\n BsSsvfxvMbkFIj\n hHFfWptKClumhr\n Karl\n PkJqHUyJUbQyeCT\n AoxHAityDxvYVyM\n gIhexshFCiZLRWMc\n GJXrNPdZJEl\n nNlzyCLcE\n Karl\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-01-21 13:40:14.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n IjZrsOqjuI\n BsSsvfxvMbkFIj\n hHFfWptKClumhr\n Karl\n PkJqHUyJUbQyeCT\n AoxHAityDxvYVyM\n gIhexshFCiZLRWMc\n GJXrNPdZJEl\n nNlzyCLcE\n Karl\n\n\n\n \n
'} ---------------------- 2010-01-21 12:40:15.000 Found online debuglevel setting: 1 ---------------------- 2010-01-21 12:40:15.000 Setting debuglevel from 0 to 1 ---------------------- 2010-01-21 12:40:15.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-01-21 12:40:15.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-01-21 12:40:15.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-01-21 12:40:15.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-01-21 12:40:16.000 Pickled file is of latest revision. ---------------------- 2010-01-21 12:40:16.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-01-21 12:40:16.000 Original filter string parsed:
2.4.2 2010-01-21 13:40:14.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString IjZrsOqjuI BsSsvfxvMbkFIj hHFfWptKClumhr Karl PkJqHUyJUbQyeCT AoxHAityDxvYVyM gIhexshFCiZLRWMc GJXrNPdZJEl nNlzyCLcE Karl
---------------------- 2010-01-21 12:40:16.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE IjZrsOqjuI ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = BsSsvfxvMbkFIj ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE hHFfWptKClumhr ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Karl ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE PkJqHUyJUbQyeCT ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE AoxHAityDxvYVyM ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE gIhexshFCiZLRWMc ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = GJXrNPdZJEl ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = nNlzyCLcE ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Karl )) ---------------------- 2010-01-21 12:40:16.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE IjZrsOqjuI ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = BsSsvfxvMbkFIj ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE hHFfWptKClumhr ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Karl ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE PkJqHUyJUbQyeCT ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE AoxHAityDxvYVyM ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE gIhexshFCiZLRWMc ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = GJXrNPdZJEl ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = nNlzyCLcE ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Karl )) ---------------------- 2010-01-21 12:40:16.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE IjZrsOqjuI ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = BsSsvfxvMbkFIj ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE hHFfWptKClumhr ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Karl ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE PkJqHUyJUbQyeCT ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE AoxHAityDxvYVyM ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE gIhexshFCiZLRWMc ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = GJXrNPdZJEl ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = nNlzyCLcE ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Karl )) ---------------------- 2010-01-21 12:40:16.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE IjZrsOqjuI ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = BsSsvfxvMbkFIj ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE hHFfWptKClumhr ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Karl ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE PkJqHUyJUbQyeCT ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE AoxHAityDxvYVyM ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE gIhexshFCiZLRWMc ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = GJXrNPdZJEl ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = nNlzyCLcE ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Karl )) ---------------------- 2010-01-21 12:40:16.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-01-21 12:40:16.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'IjZrsOqjuI' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'BsSsvfxvMbkFIj' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'hHFfWptKClumhr' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Karl' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'PkJqHUyJUbQyeCT' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'AoxHAityDxvYVyM' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'gIhexshFCiZLRWMc' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'GJXrNPdZJEl' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'nNlzyCLcE' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Karl' ))' ---------------------- 2010-01-21 12:40:16.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "BsSsvfxvMbkFIj" ---------------------- 2010-01-21 12:40:16.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-01-21 21:24:07.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-01-21 21:24:07.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString dGYpfEvatvlehR cKbmOVBQZjcrQnpKfKd nPuBFnkCZH Alexander IuezYfmuBANWWgcgdSb xPHJFhxf KlwBPtMHitZ nYIQrZuxqwhSCXgcaQz kdPYAQSiRKn Alexander
### ERROR LOG The Logging Results: ---------------------- 2010-01-21 20:24:07.000 Logging started. ---------------------- 2010-01-21 20:24:07.000 BioCASe protocol used. ---------------------- 2010-01-21 20:24:07.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-01-21 20:24:07.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-01-21 20:24:07.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-21 20:24:07.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-01-21 20:24:07.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-01-21 21:24:07.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n dGYpfEvatvlehR\n cKbmOVBQZjcrQnpKfKd\n nPuBFnkCZH\n Alexander\n IuezYfmuBANWWgcgdSb\n xPHJFhxf\n KlwBPtMHitZ\n nYIQrZuxqwhSCXgcaQz\n kdPYAQSiRKn\n Alexander\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-01-21 21:24:07.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n dGYpfEvatvlehR\n cKbmOVBQZjcrQnpKfKd\n nPuBFnkCZH\n Alexander\n IuezYfmuBANWWgcgdSb\n xPHJFhxf\n KlwBPtMHitZ\n nYIQrZuxqwhSCXgcaQz\n kdPYAQSiRKn\n Alexander\n\n\n\n \n
'} ---------------------- 2010-01-21 20:24:07.000 Found online debuglevel setting: 1 ---------------------- 2010-01-21 20:24:07.000 Setting debuglevel from 0 to 1 ---------------------- 2010-01-21 20:24:07.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-01-21 20:24:08.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-01-21 20:24:08.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-01-21 20:24:08.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-01-21 20:24:08.000 Pickled file is of latest revision. ---------------------- 2010-01-21 20:24:08.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-01-21 20:24:08.000 Original filter string parsed:
2.4.2 2010-01-21 21:24:07.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString dGYpfEvatvlehR cKbmOVBQZjcrQnpKfKd nPuBFnkCZH Alexander IuezYfmuBANWWgcgdSb xPHJFhxf KlwBPtMHitZ nYIQrZuxqwhSCXgcaQz kdPYAQSiRKn Alexander
---------------------- 2010-01-21 20:24:08.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE dGYpfEvatvlehR ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = cKbmOVBQZjcrQnpKfKd ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE nPuBFnkCZH ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Alexander ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE IuezYfmuBANWWgcgdSb ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE xPHJFhxf ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE KlwBPtMHitZ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = nYIQrZuxqwhSCXgcaQz ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = kdPYAQSiRKn ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Alexander )) ---------------------- 2010-01-21 20:24:08.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE dGYpfEvatvlehR ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = cKbmOVBQZjcrQnpKfKd ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE nPuBFnkCZH ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Alexander ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE IuezYfmuBANWWgcgdSb ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE xPHJFhxf ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE KlwBPtMHitZ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = nYIQrZuxqwhSCXgcaQz ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = kdPYAQSiRKn ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Alexander )) ---------------------- 2010-01-21 20:24:08.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE dGYpfEvatvlehR ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = cKbmOVBQZjcrQnpKfKd ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE nPuBFnkCZH ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Alexander ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE IuezYfmuBANWWgcgdSb ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE xPHJFhxf ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE KlwBPtMHitZ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = nYIQrZuxqwhSCXgcaQz ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = kdPYAQSiRKn ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Alexander )) ---------------------- 2010-01-21 20:24:08.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE dGYpfEvatvlehR ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = cKbmOVBQZjcrQnpKfKd ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE nPuBFnkCZH ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Alexander ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE IuezYfmuBANWWgcgdSb ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE xPHJFhxf ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE KlwBPtMHitZ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = nYIQrZuxqwhSCXgcaQz ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = kdPYAQSiRKn ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Alexander )) ---------------------- 2010-01-21 20:24:08.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-01-21 20:24:08.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'dGYpfEvatvlehR' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'cKbmOVBQZjcrQnpKfKd' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'nPuBFnkCZH' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Alexander' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'IuezYfmuBANWWgcgdSb' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'xPHJFhxf' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'KlwBPtMHitZ' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'nYIQrZuxqwhSCXgcaQz' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'kdPYAQSiRKn' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Alexander' ))' ---------------------- 2010-01-21 20:24:08.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "cKbmOVBQZjcrQnpKfKd" ---------------------- 2010-01-21 20:24:08.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-01-22 01:46:29.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-01-22 01:00:51.09 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-01-22 00:46:29.000 Logging started. ---------------------- 2010-01-22 00:46:29.000 BioCASe protocol used. ---------------------- 2010-01-22 00:46:29.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-01-22 00:46:29.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-01-22 00:46:29.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-22 00:46:29.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-01-22 00:46:29.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-01-22 01:00:51.09\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-01-22 01:00:51.09\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-01-22 01:00:51.09\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-01-22 00:46:29.000 Found online debuglevel setting: 1 ---------------------- 2010-01-22 00:46:29.000 Setting debuglevel from 0 to 1 ---------------------- 2010-01-22 00:46:29.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-01-22 00:46:30.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-01-22 00:46:30.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-01-22 00:46:30.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-01-22 00:46:30.000 Pickled file is of latest revision. ---------------------- 2010-01-22 00:46:30.000 Original filter string parsed:
0.1 2010-01-22 01:00:51.09 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-01-22 00:46:30.000 Filter created: None ---------------------- 2010-01-22 00:46:30.000 Compressed filter used: None ---------------------- 2010-01-22 00:46:30.000 Counting total matched records with filter=None ---------------------- 2010-01-22 00:46:30.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-01-22 00:46:30.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-01-22 13:34:32.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-01-22 13:34:32.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString RhSwrpoyM IVqezlMkNbvORjvXdjH giXPFHmStzVh Mario jkyiVDSjWZhwWr vIDRcvNgFdNMiL zbsnxIonPk BvESQnOJ RQoWNYOJckeQ Mario
### ERROR LOG The Logging Results: ---------------------- 2010-01-22 12:34:32.000 Logging started. ---------------------- 2010-01-22 12:34:32.000 BioCASe protocol used. ---------------------- 2010-01-22 12:34:32.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-01-22 12:34:32.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-01-22 12:34:32.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-22 12:34:33.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-01-22 12:34:33.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-01-22 13:34:32.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n RhSwrpoyM\n IVqezlMkNbvORjvXdjH\n giXPFHmStzVh\n Mario\n jkyiVDSjWZhwWr\n vIDRcvNgFdNMiL\n zbsnxIonPk\n BvESQnOJ\n RQoWNYOJckeQ\n Mario\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-01-22 13:34:32.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n RhSwrpoyM\n IVqezlMkNbvORjvXdjH\n giXPFHmStzVh\n Mario\n jkyiVDSjWZhwWr\n vIDRcvNgFdNMiL\n zbsnxIonPk\n BvESQnOJ\n RQoWNYOJckeQ\n Mario\n\n\n\n \n
'} ---------------------- 2010-01-22 12:34:33.000 Found online debuglevel setting: 1 ---------------------- 2010-01-22 12:34:33.000 Setting debuglevel from 0 to 1 ---------------------- 2010-01-22 12:34:33.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-01-22 12:34:33.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-01-22 12:34:33.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-01-22 12:34:33.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-01-22 12:34:33.000 Pickled file is of latest revision. ---------------------- 2010-01-22 12:34:33.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-01-22 12:34:33.000 Original filter string parsed:
2.4.2 2010-01-22 13:34:32.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString RhSwrpoyM IVqezlMkNbvORjvXdjH giXPFHmStzVh Mario jkyiVDSjWZhwWr vIDRcvNgFdNMiL zbsnxIonPk BvESQnOJ RQoWNYOJckeQ Mario
---------------------- 2010-01-22 12:34:33.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE RhSwrpoyM ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = IVqezlMkNbvORjvXdjH ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE giXPFHmStzVh ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Mario ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE jkyiVDSjWZhwWr ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE vIDRcvNgFdNMiL ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE zbsnxIonPk ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = BvESQnOJ ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = RQoWNYOJckeQ ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Mario )) ---------------------- 2010-01-22 12:34:33.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE RhSwrpoyM ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = IVqezlMkNbvORjvXdjH ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE giXPFHmStzVh ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Mario ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE jkyiVDSjWZhwWr ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE vIDRcvNgFdNMiL ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE zbsnxIonPk ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = BvESQnOJ ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = RQoWNYOJckeQ ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Mario )) ---------------------- 2010-01-22 12:34:33.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE RhSwrpoyM ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = IVqezlMkNbvORjvXdjH ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE giXPFHmStzVh ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Mario ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE jkyiVDSjWZhwWr ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE vIDRcvNgFdNMiL ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE zbsnxIonPk ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = BvESQnOJ ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = RQoWNYOJckeQ ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Mario )) ---------------------- 2010-01-22 12:34:33.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE RhSwrpoyM ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = IVqezlMkNbvORjvXdjH ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE giXPFHmStzVh ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Mario ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE jkyiVDSjWZhwWr ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE vIDRcvNgFdNMiL ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE zbsnxIonPk ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = BvESQnOJ ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = RQoWNYOJckeQ ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Mario )) ---------------------- 2010-01-22 12:34:33.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-01-22 12:34:33.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'RhSwrpoyM' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'IVqezlMkNbvORjvXdjH' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'giXPFHmStzVh' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Mario' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'jkyiVDSjWZhwWr' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'vIDRcvNgFdNMiL' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'zbsnxIonPk' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'BvESQnOJ' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'RQoWNYOJckeQ' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Mario' ))' ---------------------- 2010-01-22 12:34:33.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "IVqezlMkNbvORjvXdjH" ---------------------- 2010-01-22 12:34:33.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-01-22 20:52:22.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-01-22 20:52:21.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString PgXRhnfM YzGbSxLiHH NfHNnPreV Kevin NLwofRdCPNgD AiWMvsUpv xCpeCGgXYkDIONyEqvu BFYVVGoBamZAbJeR iArCDMxBgIk Kevin
### ERROR LOG The Logging Results: ---------------------- 2010-01-22 19:52:22.000 Logging started. ---------------------- 2010-01-22 19:52:22.000 BioCASe protocol used. ---------------------- 2010-01-22 19:52:22.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-01-22 19:52:22.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-01-22 19:52:22.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-22 19:52:22.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-01-22 19:52:22.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-01-22 20:52:21.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n PgXRhnfM\n YzGbSxLiHH\n NfHNnPreV\n Kevin\n NLwofRdCPNgD\n AiWMvsUpv\n xCpeCGgXYkDIONyEqvu\n BFYVVGoBamZAbJeR\n iArCDMxBgIk\n Kevin\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-01-22 20:52:21.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n PgXRhnfM\n YzGbSxLiHH\n NfHNnPreV\n Kevin\n NLwofRdCPNgD\n AiWMvsUpv\n xCpeCGgXYkDIONyEqvu\n BFYVVGoBamZAbJeR\n iArCDMxBgIk\n Kevin\n\n\n\n \n
'} ---------------------- 2010-01-22 19:52:22.000 Found online debuglevel setting: 1 ---------------------- 2010-01-22 19:52:22.000 Setting debuglevel from 0 to 1 ---------------------- 2010-01-22 19:52:22.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-01-22 19:52:22.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-01-22 19:52:22.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-01-22 19:52:22.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-01-22 19:52:23.000 Pickled file is of latest revision. ---------------------- 2010-01-22 19:52:23.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-01-22 19:52:23.000 Original filter string parsed:
2.4.2 2010-01-22 20:52:21.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString PgXRhnfM YzGbSxLiHH NfHNnPreV Kevin NLwofRdCPNgD AiWMvsUpv xCpeCGgXYkDIONyEqvu BFYVVGoBamZAbJeR iArCDMxBgIk Kevin
---------------------- 2010-01-22 19:52:23.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE PgXRhnfM ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = YzGbSxLiHH ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE NfHNnPreV ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Kevin ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE NLwofRdCPNgD ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE AiWMvsUpv ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE xCpeCGgXYkDIONyEqvu ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = BFYVVGoBamZAbJeR ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = iArCDMxBgIk ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Kevin )) ---------------------- 2010-01-22 19:52:23.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE PgXRhnfM ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = YzGbSxLiHH ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE NfHNnPreV ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Kevin ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE NLwofRdCPNgD ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE AiWMvsUpv ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE xCpeCGgXYkDIONyEqvu ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = BFYVVGoBamZAbJeR ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = iArCDMxBgIk ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Kevin )) ---------------------- 2010-01-22 19:52:23.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE PgXRhnfM ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = YzGbSxLiHH ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE NfHNnPreV ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Kevin ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE NLwofRdCPNgD ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE AiWMvsUpv ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE xCpeCGgXYkDIONyEqvu ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = BFYVVGoBamZAbJeR ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = iArCDMxBgIk ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Kevin )) ---------------------- 2010-01-22 19:52:23.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE PgXRhnfM ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = YzGbSxLiHH ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE NfHNnPreV ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Kevin ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE NLwofRdCPNgD ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE AiWMvsUpv ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE xCpeCGgXYkDIONyEqvu ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = BFYVVGoBamZAbJeR ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = iArCDMxBgIk ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Kevin )) ---------------------- 2010-01-22 19:52:23.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-01-22 19:52:23.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'PgXRhnfM' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'YzGbSxLiHH' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'NfHNnPreV' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Kevin' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'NLwofRdCPNgD' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'AiWMvsUpv' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'xCpeCGgXYkDIONyEqvu' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'BFYVVGoBamZAbJeR' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'iArCDMxBgIk' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Kevin' ))' ---------------------- 2010-01-22 19:52:23.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "YzGbSxLiHH" ---------------------- 2010-01-22 19:52:23.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-01-23 04:10:46.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-01-23 04:10:46.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString MjzMMHVDAPpr BxQRDYgvr qDhoETmLwr Steven ynPKORNvwbaXvUnIEjs oZmxjFAzRU oSPDZHKorS JXgJZoIIYrINQ CHtypTtNKUWaNKT Steven
### ERROR LOG The Logging Results: ---------------------- 2010-01-23 03:10:46.000 Logging started. ---------------------- 2010-01-23 03:10:46.000 BioCASe protocol used. ---------------------- 2010-01-23 03:10:46.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-01-23 03:10:46.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-01-23 03:10:46.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-23 03:10:46.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-01-23 03:10:46.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-01-23 04:10:46.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n MjzMMHVDAPpr\n BxQRDYgvr\n qDhoETmLwr\n Steven\n ynPKORNvwbaXvUnIEjs\n oZmxjFAzRU\n oSPDZHKorS\n JXgJZoIIYrINQ\n CHtypTtNKUWaNKT\n Steven\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-01-23 04:10:46.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n MjzMMHVDAPpr\n BxQRDYgvr\n qDhoETmLwr\n Steven\n ynPKORNvwbaXvUnIEjs\n oZmxjFAzRU\n oSPDZHKorS\n JXgJZoIIYrINQ\n CHtypTtNKUWaNKT\n Steven\n\n\n\n \n
'} ---------------------- 2010-01-23 03:10:46.000 Found online debuglevel setting: 1 ---------------------- 2010-01-23 03:10:46.000 Setting debuglevel from 0 to 1 ---------------------- 2010-01-23 03:10:46.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-01-23 03:10:47.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-01-23 03:10:47.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-01-23 03:10:47.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-01-23 03:10:47.000 Pickled file is of latest revision. ---------------------- 2010-01-23 03:10:47.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-01-23 03:10:47.000 Original filter string parsed:
2.4.2 2010-01-23 04:10:46.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString MjzMMHVDAPpr BxQRDYgvr qDhoETmLwr Steven ynPKORNvwbaXvUnIEjs oZmxjFAzRU oSPDZHKorS JXgJZoIIYrINQ CHtypTtNKUWaNKT Steven
---------------------- 2010-01-23 03:10:47.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE MjzMMHVDAPpr ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = BxQRDYgvr ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE qDhoETmLwr ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Steven ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE ynPKORNvwbaXvUnIEjs ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE oZmxjFAzRU ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE oSPDZHKorS ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = JXgJZoIIYrINQ ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = CHtypTtNKUWaNKT ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Steven )) ---------------------- 2010-01-23 03:10:47.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE MjzMMHVDAPpr ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = BxQRDYgvr ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE qDhoETmLwr ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Steven ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE ynPKORNvwbaXvUnIEjs ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE oZmxjFAzRU ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE oSPDZHKorS ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = JXgJZoIIYrINQ ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = CHtypTtNKUWaNKT ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Steven )) ---------------------- 2010-01-23 03:10:47.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE MjzMMHVDAPpr ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = BxQRDYgvr ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE qDhoETmLwr ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Steven ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE ynPKORNvwbaXvUnIEjs ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE oZmxjFAzRU ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE oSPDZHKorS ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = JXgJZoIIYrINQ ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = CHtypTtNKUWaNKT ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Steven )) ---------------------- 2010-01-23 03:10:47.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE MjzMMHVDAPpr ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = BxQRDYgvr ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE qDhoETmLwr ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Steven ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE ynPKORNvwbaXvUnIEjs ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE oZmxjFAzRU ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE oSPDZHKorS ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = JXgJZoIIYrINQ ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = CHtypTtNKUWaNKT ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Steven )) ---------------------- 2010-01-23 03:10:47.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-01-23 03:10:47.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'MjzMMHVDAPpr' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'BxQRDYgvr' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'qDhoETmLwr' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Steven' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'ynPKORNvwbaXvUnIEjs' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'oZmxjFAzRU' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'oSPDZHKorS' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'JXgJZoIIYrINQ' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'CHtypTtNKUWaNKT' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Steven' ))' ---------------------- 2010-01-23 03:10:47.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "BxQRDYgvr" ---------------------- 2010-01-23 03:10:47.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-01-23 12:15:30.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-01-23 12:15:30.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString nSHRjQJqOgLvfKDKEo AmmmKaapYdSnSFrgmN XwPHfuNcfs John aEZRYhRtFEXOTf bEWQsNZncQKVWkbf tEyJEtevvMlL XgHnSTZiwlpkeRuoBT IZEksmADPvENpL John
### ERROR LOG The Logging Results: ---------------------- 2010-01-23 11:15:30.000 Logging started. ---------------------- 2010-01-23 11:15:31.000 BioCASe protocol used. ---------------------- 2010-01-23 11:15:31.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-01-23 11:15:31.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-01-23 11:15:31.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-23 11:15:31.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-01-23 11:15:31.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-01-23 12:15:30.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n nSHRjQJqOgLvfKDKEo\n AmmmKaapYdSnSFrgmN\n XwPHfuNcfs\n John\n aEZRYhRtFEXOTf\n bEWQsNZncQKVWkbf\n tEyJEtevvMlL\n XgHnSTZiwlpkeRuoBT\n IZEksmADPvENpL\n John\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-01-23 12:15:30.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n nSHRjQJqOgLvfKDKEo\n AmmmKaapYdSnSFrgmN\n XwPHfuNcfs\n John\n aEZRYhRtFEXOTf\n bEWQsNZncQKVWkbf\n tEyJEtevvMlL\n XgHnSTZiwlpkeRuoBT\n IZEksmADPvENpL\n John\n\n\n\n \n
'} ---------------------- 2010-01-23 11:15:31.000 Found online debuglevel setting: 1 ---------------------- 2010-01-23 11:15:31.000 Setting debuglevel from 0 to 1 ---------------------- 2010-01-23 11:15:31.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-01-23 11:15:31.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-01-23 11:15:31.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-01-23 11:15:31.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-01-23 11:15:31.000 Pickled file is of latest revision. ---------------------- 2010-01-23 11:15:31.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-01-23 11:15:31.000 Original filter string parsed:
2.4.2 2010-01-23 12:15:30.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString nSHRjQJqOgLvfKDKEo AmmmKaapYdSnSFrgmN XwPHfuNcfs John aEZRYhRtFEXOTf bEWQsNZncQKVWkbf tEyJEtevvMlL XgHnSTZiwlpkeRuoBT IZEksmADPvENpL John
---------------------- 2010-01-23 11:15:31.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE nSHRjQJqOgLvfKDKEo ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = AmmmKaapYdSnSFrgmN ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE XwPHfuNcfs ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE John ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE aEZRYhRtFEXOTf ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE bEWQsNZncQKVWkbf ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE tEyJEtevvMlL ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = XgHnSTZiwlpkeRuoBT ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = IZEksmADPvENpL ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE John )) ---------------------- 2010-01-23 11:15:31.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE nSHRjQJqOgLvfKDKEo ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = AmmmKaapYdSnSFrgmN ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE XwPHfuNcfs ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE John ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE aEZRYhRtFEXOTf ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE bEWQsNZncQKVWkbf ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE tEyJEtevvMlL ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = XgHnSTZiwlpkeRuoBT ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = IZEksmADPvENpL ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE John )) ---------------------- 2010-01-23 11:15:31.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE nSHRjQJqOgLvfKDKEo ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = AmmmKaapYdSnSFrgmN ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE XwPHfuNcfs ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE John ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE aEZRYhRtFEXOTf ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE bEWQsNZncQKVWkbf ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE tEyJEtevvMlL ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = XgHnSTZiwlpkeRuoBT ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = IZEksmADPvENpL ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE John )) ---------------------- 2010-01-23 11:15:31.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE nSHRjQJqOgLvfKDKEo ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = AmmmKaapYdSnSFrgmN ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE XwPHfuNcfs ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE John ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE aEZRYhRtFEXOTf ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE bEWQsNZncQKVWkbf ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE tEyJEtevvMlL ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = XgHnSTZiwlpkeRuoBT ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = IZEksmADPvENpL ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE John )) ---------------------- 2010-01-23 11:15:31.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-01-23 11:15:31.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'nSHRjQJqOgLvfKDKEo' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'AmmmKaapYdSnSFrgmN' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'XwPHfuNcfs' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'John' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'aEZRYhRtFEXOTf' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'bEWQsNZncQKVWkbf' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'tEyJEtevvMlL' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'XgHnSTZiwlpkeRuoBT' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'IZEksmADPvENpL' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'John' ))' ---------------------- 2010-01-23 11:15:31.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "AmmmKaapYdSnSFrgmN" ---------------------- 2010-01-23 11:15:31.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-01-23 19:33:13.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-01-23 19:33:12.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString cQoWzhtvLaRH nLKgWvkjZxGIJku zijjrojjoTUNdY Joseph XjmVSzFdRtodBKMxQtF HhsyuhhHeGDuEPLw rSsQmjwQh ZAFMYioM xYDghKCSyNCjMYvIXQr Joseph
### ERROR LOG The Logging Results: ---------------------- 2010-01-23 18:33:13.000 Logging started. ---------------------- 2010-01-23 18:33:13.000 BioCASe protocol used. ---------------------- 2010-01-23 18:33:13.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-01-23 18:33:13.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-01-23 18:33:13.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-23 18:33:13.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-01-23 18:33:13.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-01-23 19:33:12.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n cQoWzhtvLaRH\n nLKgWvkjZxGIJku\n zijjrojjoTUNdY\n Joseph\n XjmVSzFdRtodBKMxQtF\n HhsyuhhHeGDuEPLw\n rSsQmjwQh\n ZAFMYioM\n xYDghKCSyNCjMYvIXQr\n Joseph\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-01-23 19:33:12.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n cQoWzhtvLaRH\n nLKgWvkjZxGIJku\n zijjrojjoTUNdY\n Joseph\n XjmVSzFdRtodBKMxQtF\n HhsyuhhHeGDuEPLw\n rSsQmjwQh\n ZAFMYioM\n xYDghKCSyNCjMYvIXQr\n Joseph\n\n\n\n \n
'} ---------------------- 2010-01-23 18:33:13.000 Found online debuglevel setting: 1 ---------------------- 2010-01-23 18:33:13.000 Setting debuglevel from 0 to 1 ---------------------- 2010-01-23 18:33:13.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-01-23 18:33:13.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-01-23 18:33:13.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-01-23 18:33:13.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-01-23 18:33:14.000 Pickled file is of latest revision. ---------------------- 2010-01-23 18:33:14.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-01-23 18:33:14.000 Original filter string parsed:
2.4.2 2010-01-23 19:33:12.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString cQoWzhtvLaRH nLKgWvkjZxGIJku zijjrojjoTUNdY Joseph XjmVSzFdRtodBKMxQtF HhsyuhhHeGDuEPLw rSsQmjwQh ZAFMYioM xYDghKCSyNCjMYvIXQr Joseph
---------------------- 2010-01-23 18:33:14.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE cQoWzhtvLaRH ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = nLKgWvkjZxGIJku ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE zijjrojjoTUNdY ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Joseph ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE XjmVSzFdRtodBKMxQtF ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE HhsyuhhHeGDuEPLw ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE rSsQmjwQh ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ZAFMYioM ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = xYDghKCSyNCjMYvIXQr ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Joseph )) ---------------------- 2010-01-23 18:33:14.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE cQoWzhtvLaRH ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = nLKgWvkjZxGIJku ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE zijjrojjoTUNdY ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Joseph ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE XjmVSzFdRtodBKMxQtF ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE HhsyuhhHeGDuEPLw ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE rSsQmjwQh ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ZAFMYioM ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = xYDghKCSyNCjMYvIXQr ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Joseph )) ---------------------- 2010-01-23 18:33:14.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE cQoWzhtvLaRH ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = nLKgWvkjZxGIJku ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE zijjrojjoTUNdY ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Joseph ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE XjmVSzFdRtodBKMxQtF ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE HhsyuhhHeGDuEPLw ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE rSsQmjwQh ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ZAFMYioM ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = xYDghKCSyNCjMYvIXQr ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Joseph )) ---------------------- 2010-01-23 18:33:14.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE cQoWzhtvLaRH ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = nLKgWvkjZxGIJku ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE zijjrojjoTUNdY ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Joseph ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE XjmVSzFdRtodBKMxQtF ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE HhsyuhhHeGDuEPLw ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE rSsQmjwQh ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ZAFMYioM ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = xYDghKCSyNCjMYvIXQr ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Joseph )) ---------------------- 2010-01-23 18:33:14.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-01-23 18:33:14.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'cQoWzhtvLaRH' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'nLKgWvkjZxGIJku' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'zijjrojjoTUNdY' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Joseph' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'XjmVSzFdRtodBKMxQtF' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'HhsyuhhHeGDuEPLw' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'rSsQmjwQh' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'ZAFMYioM' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'xYDghKCSyNCjMYvIXQr' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Joseph' ))' ---------------------- 2010-01-23 18:33:14.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "nLKgWvkjZxGIJku" ---------------------- 2010-01-23 18:33:14.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-01-24 13:16:37.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-01-24 13:16:37.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString SytdiCFeVNz tkpwkb@solzrp.com IImhqQzNJtHh mtscdny USA 39917 x8Mkji tkpwkb@solzrp.com tkpwkb@solzrp.com mtscdny
### ERROR LOG The Logging Results: ---------------------- 2010-01-24 12:16:37.000 Logging started. ---------------------- 2010-01-24 12:16:37.000 BioCASe protocol used. ---------------------- 2010-01-24 12:16:37.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-01-24 12:16:37.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-01-24 12:16:37.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-24 12:16:37.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-01-24 12:16:37.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-01-24 13:16:37.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n SytdiCFeVNz\n tkpwkb@solzrp.com\n IImhqQzNJtHh\n mtscdny\n USA\n 39917\n x8Mkji\n tkpwkb@solzrp.com\n tkpwkb@solzrp.com\n mtscdny\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-01-24 13:16:37.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n SytdiCFeVNz\n tkpwkb@solzrp.com\n IImhqQzNJtHh\n mtscdny\n USA\n 39917\n x8Mkji\n tkpwkb@solzrp.com\n tkpwkb@solzrp.com\n mtscdny\n\n\n\n \n
'} ---------------------- 2010-01-24 12:16:37.000 Found online debuglevel setting: 1 ---------------------- 2010-01-24 12:16:37.000 Setting debuglevel from 0 to 1 ---------------------- 2010-01-24 12:16:37.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-01-24 12:16:38.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-01-24 12:16:38.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-01-24 12:16:38.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-01-24 12:16:38.000 Pickled file is of latest revision. ---------------------- 2010-01-24 12:16:38.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-01-24 12:16:38.000 Original filter string parsed:
2.4.2 2010-01-24 13:16:37.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString SytdiCFeVNz tkpwkb@solzrp.com IImhqQzNJtHh mtscdny USA 39917 x8Mkji tkpwkb@solzrp.com tkpwkb@solzrp.com mtscdny
---------------------- 2010-01-24 12:16:38.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE SytdiCFeVNz ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = tkpwkb@solzrp.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE IImhqQzNJtHh ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE mtscdny ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 39917 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE x8Mkji ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = tkpwkb@solzrp.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = tkpwkb@solzrp.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE mtscdny )) ---------------------- 2010-01-24 12:16:38.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE SytdiCFeVNz ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = tkpwkb@solzrp.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE IImhqQzNJtHh ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE mtscdny ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 39917 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE x8Mkji ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = tkpwkb@solzrp.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = tkpwkb@solzrp.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE mtscdny )) ---------------------- 2010-01-24 12:16:38.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE SytdiCFeVNz ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = tkpwkb@solzrp.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE IImhqQzNJtHh ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE mtscdny ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 39917 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE x8Mkji ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = tkpwkb@solzrp.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = tkpwkb@solzrp.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE mtscdny )) ---------------------- 2010-01-24 12:16:38.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE SytdiCFeVNz ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = tkpwkb@solzrp.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE IImhqQzNJtHh ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE mtscdny ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 39917 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE x8Mkji ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = tkpwkb@solzrp.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = tkpwkb@solzrp.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE mtscdny )) ---------------------- 2010-01-24 12:16:38.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-01-24 12:16:38.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'SytdiCFeVNz' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'tkpwkb@solzrp.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'IImhqQzNJtHh' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'mtscdny' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '39917' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'x8Mkji' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'tkpwkb@solzrp.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'tkpwkb@solzrp.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'mtscdny' ))' ---------------------- 2010-01-24 12:16:38.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "tkpwkb@solzrp.com" ---------------------- 2010-01-24 12:16:38.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-01-25 17:39:08.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2010-01-25 16:39:08.000 Logging started. ---------------------- 2010-01-25 16:39:08.000 BioCASe protocol used. ---------------------- 2010-01-25 16:39:08.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-01-25 16:39:08.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-01-25 16:39:08.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-25 16:39:08.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2010-01-25 16:39:08.000 Unknown request type! Default to capabilities. ---------------------- 2010-01-25 16:39:08.000 Destination hostname could not be determined ---------------------- 2010-01-25 16:39:08.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2010-01-25 16:39:08.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2010-01-25 16:39:08.000 Reset CMF convenience cache data hash. ---------------------- 2010-01-25 16:39:08.000 Loading CMF from the source XML file. ---------------------- 2010-01-25 16:39:08.000 CMF Version 2.1 detected. ---------------------- 2010-01-25 16:39:08.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2010-01-25 16:39:08.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2010-01-25 16:39:08.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-01-25 16:39:08.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-01-25 16:39:08.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-01-25 16:39:08.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-01-25 16:39:08.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-01-25 16:39:08.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-01-26 19:08:17.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-01-26 19:08:17.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString vNWnighWwvmGY etzmdd@ouhwvf.com wUdLrhzXgqzS pfkrgdc USA 6145 utoma etzmdd@ouhwvf.com etzmdd@ouhwvf.com pfkrgdc
### ERROR LOG The Logging Results: ---------------------- 2010-01-26 18:08:17.000 Logging started. ---------------------- 2010-01-26 18:08:17.000 BioCASe protocol used. ---------------------- 2010-01-26 18:08:17.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-01-26 18:08:17.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-01-26 18:08:17.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-26 18:08:17.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-01-26 18:08:17.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-01-26 19:08:17.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n vNWnighWwvmGY\n etzmdd@ouhwvf.com\n wUdLrhzXgqzS\n pfkrgdc\n USA\n 6145\n utoma\n etzmdd@ouhwvf.com\n etzmdd@ouhwvf.com\n pfkrgdc\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-01-26 19:08:17.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n vNWnighWwvmGY\n etzmdd@ouhwvf.com\n wUdLrhzXgqzS\n pfkrgdc\n USA\n 6145\n utoma\n etzmdd@ouhwvf.com\n etzmdd@ouhwvf.com\n pfkrgdc\n\n\n\n \n
'} ---------------------- 2010-01-26 18:08:17.000 Found online debuglevel setting: 1 ---------------------- 2010-01-26 18:08:17.000 Setting debuglevel from 0 to 1 ---------------------- 2010-01-26 18:08:17.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-01-26 18:08:17.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-01-26 18:08:17.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-01-26 18:08:17.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-01-26 18:08:18.000 Pickled file is of latest revision. ---------------------- 2010-01-26 18:08:18.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-01-26 18:08:18.000 Original filter string parsed:
2.4.2 2010-01-26 19:08:17.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString vNWnighWwvmGY etzmdd@ouhwvf.com wUdLrhzXgqzS pfkrgdc USA 6145 utoma etzmdd@ouhwvf.com etzmdd@ouhwvf.com pfkrgdc
---------------------- 2010-01-26 18:08:18.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE vNWnighWwvmGY ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = etzmdd@ouhwvf.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE wUdLrhzXgqzS ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE pfkrgdc ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 6145 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE utoma ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = etzmdd@ouhwvf.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = etzmdd@ouhwvf.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE pfkrgdc )) ---------------------- 2010-01-26 18:08:18.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE vNWnighWwvmGY ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = etzmdd@ouhwvf.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE wUdLrhzXgqzS ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE pfkrgdc ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 6145 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE utoma ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = etzmdd@ouhwvf.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = etzmdd@ouhwvf.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE pfkrgdc )) ---------------------- 2010-01-26 18:08:18.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE vNWnighWwvmGY ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = etzmdd@ouhwvf.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE wUdLrhzXgqzS ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE pfkrgdc ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 6145 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE utoma ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = etzmdd@ouhwvf.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = etzmdd@ouhwvf.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE pfkrgdc )) ---------------------- 2010-01-26 18:08:18.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE vNWnighWwvmGY ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = etzmdd@ouhwvf.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE wUdLrhzXgqzS ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE pfkrgdc ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 6145 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE utoma ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = etzmdd@ouhwvf.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = etzmdd@ouhwvf.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE pfkrgdc )) ---------------------- 2010-01-26 18:08:18.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-01-26 18:08:18.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'vNWnighWwvmGY' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'etzmdd@ouhwvf.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'wUdLrhzXgqzS' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'pfkrgdc' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '6145' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'utoma' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'etzmdd@ouhwvf.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'etzmdd@ouhwvf.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'pfkrgdc' ))' ---------------------- 2010-01-26 18:08:18.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "etzmdd@ouhwvf.com" ---------------------- 2010-01-26 18:08:18.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-01-27 20:21:54.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-01-27 20:21:53.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString wKrisrAaoeQohwtqmtp rniirx@eolpsx.com iuKvfDLEsNYJw reqkwauam USA 77949 Lal3Ww rniirx@eolpsx.com rniirx@eolpsx.com reqkwauam
### ERROR LOG The Logging Results: ---------------------- 2010-01-27 19:21:54.000 Logging started. ---------------------- 2010-01-27 19:21:54.000 BioCASe protocol used. ---------------------- 2010-01-27 19:21:54.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-01-27 19:21:54.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-01-27 19:21:54.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-27 19:21:54.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-01-27 19:21:54.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-01-27 20:21:53.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n wKrisrAaoeQohwtqmtp\n rniirx@eolpsx.com\n iuKvfDLEsNYJw\n reqkwauam\n USA\n 77949\n Lal3Ww\n rniirx@eolpsx.com\n rniirx@eolpsx.com\n reqkwauam\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-01-27 20:21:53.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n wKrisrAaoeQohwtqmtp\n rniirx@eolpsx.com\n iuKvfDLEsNYJw\n reqkwauam\n USA\n 77949\n Lal3Ww\n rniirx@eolpsx.com\n rniirx@eolpsx.com\n reqkwauam\n\n\n\n \n
'} ---------------------- 2010-01-27 19:21:54.000 Found online debuglevel setting: 1 ---------------------- 2010-01-27 19:21:54.000 Setting debuglevel from 0 to 1 ---------------------- 2010-01-27 19:21:54.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-01-27 19:21:55.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-01-27 19:21:55.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-01-27 19:21:55.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-01-27 19:21:55.000 Pickled file is of latest revision. ---------------------- 2010-01-27 19:21:55.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-01-27 19:21:55.000 Original filter string parsed:
2.4.2 2010-01-27 20:21:53.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString wKrisrAaoeQohwtqmtp rniirx@eolpsx.com iuKvfDLEsNYJw reqkwauam USA 77949 Lal3Ww rniirx@eolpsx.com rniirx@eolpsx.com reqkwauam
---------------------- 2010-01-27 19:21:55.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE wKrisrAaoeQohwtqmtp ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = rniirx@eolpsx.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE iuKvfDLEsNYJw ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE reqkwauam ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 77949 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE Lal3Ww ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = rniirx@eolpsx.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = rniirx@eolpsx.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE reqkwauam )) ---------------------- 2010-01-27 19:21:55.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE wKrisrAaoeQohwtqmtp ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = rniirx@eolpsx.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE iuKvfDLEsNYJw ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE reqkwauam ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 77949 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE Lal3Ww ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = rniirx@eolpsx.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = rniirx@eolpsx.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE reqkwauam )) ---------------------- 2010-01-27 19:21:55.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE wKrisrAaoeQohwtqmtp ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = rniirx@eolpsx.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE iuKvfDLEsNYJw ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE reqkwauam ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 77949 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE Lal3Ww ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = rniirx@eolpsx.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = rniirx@eolpsx.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE reqkwauam )) ---------------------- 2010-01-27 19:21:55.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE wKrisrAaoeQohwtqmtp ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = rniirx@eolpsx.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE iuKvfDLEsNYJw ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE reqkwauam ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 77949 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE Lal3Ww ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = rniirx@eolpsx.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = rniirx@eolpsx.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE reqkwauam )) ---------------------- 2010-01-27 19:21:55.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-01-27 19:21:55.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'wKrisrAaoeQohwtqmtp' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'rniirx@eolpsx.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'iuKvfDLEsNYJw' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'reqkwauam' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '77949' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'Lal3Ww' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'rniirx@eolpsx.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'rniirx@eolpsx.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'reqkwauam' ))' ---------------------- 2010-01-27 19:21:55.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "rniirx@eolpsx.com" ---------------------- 2010-01-27 19:21:55.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2010-01-28 19:49:22.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2010-01-28 18:49:22.000 Logging started. ---------------------- 2010-01-28 18:49:22.000 BioCASe protocol used. ---------------------- 2010-01-28 18:49:22.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2010-01-28 18:49:22.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2010-01-28 18:49:22.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-28 18:49:23.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2010-01-28 18:49:23.000 Unknown request type! Default to capabilities. ---------------------- 2010-01-28 18:49:23.000 Destination hostname could not be determined ---------------------- 2010-01-28 18:49:23.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2010-01-28 18:49:23.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-01-28 18:49:23.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-01-28 18:49:23.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2010-01-28 18:49:23.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-01-28 18:49:23.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-01-28 18:49:23.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-01-29 01:45:25.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-01-29 01:00:08.31 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-01-29 00:45:25.000 Logging started. ---------------------- 2010-01-29 00:45:25.000 BioCASe protocol used. ---------------------- 2010-01-29 00:45:25.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-01-29 00:45:25.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-01-29 00:45:25.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-29 00:45:25.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-01-29 00:45:25.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-01-29 01:00:08.31\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-01-29 01:00:08.31\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-01-29 01:00:08.31\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-01-29 00:45:25.000 Found online debuglevel setting: 1 ---------------------- 2010-01-29 00:45:25.000 Setting debuglevel from 0 to 1 ---------------------- 2010-01-29 00:45:25.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-01-29 00:45:25.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-01-29 00:45:25.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-01-29 00:45:25.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-01-29 00:45:25.000 Pickled file is of latest revision. ---------------------- 2010-01-29 00:45:25.000 Original filter string parsed:
0.1 2010-01-29 01:00:08.31 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-01-29 00:45:25.000 Filter created: None ---------------------- 2010-01-29 00:45:25.000 Compressed filter used: None ---------------------- 2010-01-29 00:45:25.000 Counting total matched records with filter=None ---------------------- 2010-01-29 00:45:26.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-01-29 00:45:26.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-01-29 22:28:02.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-01-29 22:28:01.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString mScmludTfiDvdOmSxg MVGLSiXnSpSJw bgsrdKKc Nicholas zAhgdEelrTbHJIZpwv yFQexxeqwDz HsMpPacXSNZPFn ftcaOnYsFrpjHhKh eKSttNrkqsFdDoC Nicholas
### ERROR LOG The Logging Results: ---------------------- 2010-01-29 21:28:02.000 Logging started. ---------------------- 2010-01-29 21:28:02.000 BioCASe protocol used. ---------------------- 2010-01-29 21:28:02.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-01-29 21:28:02.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-01-29 21:28:02.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-29 21:28:02.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-01-29 21:28:02.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-01-29 22:28:01.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n mScmludTfiDvdOmSxg\n MVGLSiXnSpSJw\n bgsrdKKc\n Nicholas\n zAhgdEelrTbHJIZpwv\n yFQexxeqwDz\n HsMpPacXSNZPFn\n ftcaOnYsFrpjHhKh\n eKSttNrkqsFdDoC\n Nicholas\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-01-29 22:28:01.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n mScmludTfiDvdOmSxg\n MVGLSiXnSpSJw\n bgsrdKKc\n Nicholas\n zAhgdEelrTbHJIZpwv\n yFQexxeqwDz\n HsMpPacXSNZPFn\n ftcaOnYsFrpjHhKh\n eKSttNrkqsFdDoC\n Nicholas\n\n\n\n \n
'} ---------------------- 2010-01-29 21:28:02.000 Found online debuglevel setting: 1 ---------------------- 2010-01-29 21:28:02.000 Setting debuglevel from 0 to 1 ---------------------- 2010-01-29 21:28:02.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-01-29 21:28:02.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-01-29 21:28:02.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-01-29 21:28:02.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-01-29 21:28:03.000 Pickled file is of latest revision. ---------------------- 2010-01-29 21:28:03.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-01-29 21:28:03.000 Original filter string parsed:
2.4.2 2010-01-29 22:28:01.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString mScmludTfiDvdOmSxg MVGLSiXnSpSJw bgsrdKKc Nicholas zAhgdEelrTbHJIZpwv yFQexxeqwDz HsMpPacXSNZPFn ftcaOnYsFrpjHhKh eKSttNrkqsFdDoC Nicholas
---------------------- 2010-01-29 21:28:03.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE mScmludTfiDvdOmSxg ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = MVGLSiXnSpSJw ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE bgsrdKKc ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Nicholas ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE zAhgdEelrTbHJIZpwv ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE yFQexxeqwDz ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE HsMpPacXSNZPFn ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ftcaOnYsFrpjHhKh ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = eKSttNrkqsFdDoC ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Nicholas )) ---------------------- 2010-01-29 21:28:03.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE mScmludTfiDvdOmSxg ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = MVGLSiXnSpSJw ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE bgsrdKKc ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Nicholas ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE zAhgdEelrTbHJIZpwv ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE yFQexxeqwDz ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE HsMpPacXSNZPFn ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ftcaOnYsFrpjHhKh ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = eKSttNrkqsFdDoC ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Nicholas )) ---------------------- 2010-01-29 21:28:03.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE mScmludTfiDvdOmSxg ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = MVGLSiXnSpSJw ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE bgsrdKKc ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Nicholas ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE zAhgdEelrTbHJIZpwv ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE yFQexxeqwDz ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE HsMpPacXSNZPFn ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ftcaOnYsFrpjHhKh ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = eKSttNrkqsFdDoC ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Nicholas )) ---------------------- 2010-01-29 21:28:03.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE mScmludTfiDvdOmSxg ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = MVGLSiXnSpSJw ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE bgsrdKKc ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Nicholas ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE zAhgdEelrTbHJIZpwv ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE yFQexxeqwDz ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE HsMpPacXSNZPFn ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ftcaOnYsFrpjHhKh ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = eKSttNrkqsFdDoC ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Nicholas )) ---------------------- 2010-01-29 21:28:03.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-01-29 21:28:03.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'mScmludTfiDvdOmSxg' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'MVGLSiXnSpSJw' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'bgsrdKKc' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Nicholas' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'zAhgdEelrTbHJIZpwv' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'yFQexxeqwDz' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'HsMpPacXSNZPFn' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'ftcaOnYsFrpjHhKh' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'eKSttNrkqsFdDoC' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Nicholas' ))' ---------------------- 2010-01-29 21:28:03.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "MVGLSiXnSpSJw" ---------------------- 2010-01-29 21:28:03.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2010-01-30 10:30:52.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2010-01-30 09:30:52.000 Logging started. ---------------------- 2010-01-30 09:30:52.000 BioCASe protocol used. ---------------------- 2010-01-30 09:30:52.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2010-01-30 09:30:52.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2010-01-30 09:30:52.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-30 09:30:52.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2010-01-30 09:30:52.000 Unknown request type! Default to capabilities. ---------------------- 2010-01-30 09:30:52.000 Destination hostname could not be determined ---------------------- 2010-01-30 09:30:52.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2010-01-30 09:30:52.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-01-30 09:30:53.000 Pickled file is of latest revision. ---------------------- 2010-01-30 09:30:53.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2010-01-30 09:30:53.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2010-01-30 09:30:53.000 Reset CMF convenience cache data hash. ---------------------- 2010-01-30 09:30:53.000 Loading CMF from the source XML file. ---------------------- 2010-01-30 09:30:53.000 CMF Version 2.1 detected. ---------------------- 2010-01-30 09:30:53.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2010-01-30 09:30:53.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2010-01-30 09:30:53.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-01-30 09:30:53.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-01-30 09:30:53.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-01-30 21:42:19.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-01-30 21:42:18.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString IbVNztqHyef pzqssi@vrfqoz.com wkAlmOQbTSJP jsosgwlat USA 283238 zLsf0 pzqssi@vrfqoz.com pzqssi@vrfqoz.com jsosgwlat
### ERROR LOG The Logging Results: ---------------------- 2010-01-30 20:42:19.000 Logging started. ---------------------- 2010-01-30 20:42:19.000 BioCASe protocol used. ---------------------- 2010-01-30 20:42:19.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-01-30 20:42:19.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-01-30 20:42:19.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-30 20:42:19.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-01-30 20:42:19.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-01-30 21:42:18.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n IbVNztqHyef\n pzqssi@vrfqoz.com\n wkAlmOQbTSJP\n jsosgwlat\n USA\n 283238\n zLsf0\n pzqssi@vrfqoz.com\n pzqssi@vrfqoz.com\n jsosgwlat\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-01-30 21:42:18.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n IbVNztqHyef\n pzqssi@vrfqoz.com\n wkAlmOQbTSJP\n jsosgwlat\n USA\n 283238\n zLsf0\n pzqssi@vrfqoz.com\n pzqssi@vrfqoz.com\n jsosgwlat\n\n\n\n \n
'} ---------------------- 2010-01-30 20:42:19.000 Found online debuglevel setting: 1 ---------------------- 2010-01-30 20:42:19.000 Setting debuglevel from 0 to 1 ---------------------- 2010-01-30 20:42:19.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-01-30 20:42:19.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-01-30 20:42:19.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-01-30 20:42:19.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-01-30 20:42:19.000 Pickled file is of latest revision. ---------------------- 2010-01-30 20:42:19.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-01-30 20:42:19.000 Original filter string parsed:
2.4.2 2010-01-30 21:42:18.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString IbVNztqHyef pzqssi@vrfqoz.com wkAlmOQbTSJP jsosgwlat USA 283238 zLsf0 pzqssi@vrfqoz.com pzqssi@vrfqoz.com jsosgwlat
---------------------- 2010-01-30 20:42:19.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE IbVNztqHyef ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = pzqssi@vrfqoz.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE wkAlmOQbTSJP ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE jsosgwlat ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 283238 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE zLsf0 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = pzqssi@vrfqoz.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = pzqssi@vrfqoz.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jsosgwlat )) ---------------------- 2010-01-30 20:42:19.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE IbVNztqHyef ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = pzqssi@vrfqoz.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE wkAlmOQbTSJP ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE jsosgwlat ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 283238 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE zLsf0 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = pzqssi@vrfqoz.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = pzqssi@vrfqoz.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jsosgwlat )) ---------------------- 2010-01-30 20:42:19.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE IbVNztqHyef ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = pzqssi@vrfqoz.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE wkAlmOQbTSJP ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE jsosgwlat ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 283238 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE zLsf0 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = pzqssi@vrfqoz.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = pzqssi@vrfqoz.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jsosgwlat )) ---------------------- 2010-01-30 20:42:19.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE IbVNztqHyef ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = pzqssi@vrfqoz.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE wkAlmOQbTSJP ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE jsosgwlat ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 283238 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE zLsf0 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = pzqssi@vrfqoz.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = pzqssi@vrfqoz.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jsosgwlat )) ---------------------- 2010-01-30 20:42:19.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-01-30 20:42:19.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'IbVNztqHyef' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'pzqssi@vrfqoz.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'wkAlmOQbTSJP' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'jsosgwlat' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '283238' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'zLsf0' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'pzqssi@vrfqoz.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'pzqssi@vrfqoz.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'jsosgwlat' ))' ---------------------- 2010-01-30 20:42:19.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "pzqssi@vrfqoz.com" ---------------------- 2010-01-30 20:42:19.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-01-30 21:42:20.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-01-30 21:42:20.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString TdUlOombXJHw flgsfs@ivfppg.com mfiqKtcJbeWE ikukivr USA 7690 jJxdAL flgsfs@ivfppg.com flgsfs@ivfppg.com ikukivr
### ERROR LOG The Logging Results: ---------------------- 2010-01-30 20:42:20.000 Logging started. ---------------------- 2010-01-30 20:42:20.000 BioCASe protocol used. ---------------------- 2010-01-30 20:42:20.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-01-30 20:42:20.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-01-30 20:42:20.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-30 20:42:20.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-01-30 20:42:20.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-01-30 21:42:20.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n TdUlOombXJHw\n flgsfs@ivfppg.com\n mfiqKtcJbeWE\n ikukivr\n USA\n 7690\n jJxdAL\n flgsfs@ivfppg.com\n flgsfs@ivfppg.com\n ikukivr\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-01-30 21:42:20.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n TdUlOombXJHw\n flgsfs@ivfppg.com\n mfiqKtcJbeWE\n ikukivr\n USA\n 7690\n jJxdAL\n flgsfs@ivfppg.com\n flgsfs@ivfppg.com\n ikukivr\n\n\n\n \n
'} ---------------------- 2010-01-30 20:42:20.000 Found online debuglevel setting: 1 ---------------------- 2010-01-30 20:42:20.000 Setting debuglevel from 0 to 1 ---------------------- 2010-01-30 20:42:20.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-01-30 20:42:21.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-01-30 20:42:21.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-01-30 20:42:21.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-01-30 20:42:21.000 Pickled file is of latest revision. ---------------------- 2010-01-30 20:42:21.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-01-30 20:42:21.000 Original filter string parsed:
2.4.2 2010-01-30 21:42:20.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString TdUlOombXJHw flgsfs@ivfppg.com mfiqKtcJbeWE ikukivr USA 7690 jJxdAL flgsfs@ivfppg.com flgsfs@ivfppg.com ikukivr
---------------------- 2010-01-30 20:42:21.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE TdUlOombXJHw ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = flgsfs@ivfppg.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE mfiqKtcJbeWE ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE ikukivr ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 7690 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE jJxdAL ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = flgsfs@ivfppg.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = flgsfs@ivfppg.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE ikukivr )) ---------------------- 2010-01-30 20:42:21.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE TdUlOombXJHw ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = flgsfs@ivfppg.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE mfiqKtcJbeWE ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE ikukivr ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 7690 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE jJxdAL ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = flgsfs@ivfppg.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = flgsfs@ivfppg.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE ikukivr )) ---------------------- 2010-01-30 20:42:21.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE TdUlOombXJHw ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = flgsfs@ivfppg.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE mfiqKtcJbeWE ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE ikukivr ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 7690 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE jJxdAL ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = flgsfs@ivfppg.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = flgsfs@ivfppg.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE ikukivr )) ---------------------- 2010-01-30 20:42:21.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE TdUlOombXJHw ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = flgsfs@ivfppg.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE mfiqKtcJbeWE ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE ikukivr ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 7690 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE jJxdAL ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = flgsfs@ivfppg.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = flgsfs@ivfppg.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE ikukivr )) ---------------------- 2010-01-30 20:42:21.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-01-30 20:42:21.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'TdUlOombXJHw' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'flgsfs@ivfppg.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'mfiqKtcJbeWE' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'ikukivr' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '7690' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'jJxdAL' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'flgsfs@ivfppg.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'flgsfs@ivfppg.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'ikukivr' ))' ---------------------- 2010-01-30 20:42:21.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "flgsfs@ivfppg.com" ---------------------- 2010-01-30 20:42:21.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-01-31 09:21:43.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-01-31 09:21:42.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString FIZlBODnFZwYiVxax rztirk@rrpolj.com EvcvtoBJBbcwXna catusgpir USA 96374 vnRut rztirk@rrpolj.com rztirk@rrpolj.com catusgpir
### ERROR LOG The Logging Results: ---------------------- 2010-01-31 08:21:43.000 Logging started. ---------------------- 2010-01-31 08:21:43.000 BioCASe protocol used. ---------------------- 2010-01-31 08:21:43.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-01-31 08:21:43.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-01-31 08:21:43.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-01-31 08:21:43.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-01-31 08:21:43.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-01-31 09:21:42.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n FIZlBODnFZwYiVxax\n rztirk@rrpolj.com\n EvcvtoBJBbcwXna\n catusgpir\n USA\n 96374\n vnRut\n rztirk@rrpolj.com\n rztirk@rrpolj.com\n catusgpir\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-01-31 09:21:42.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n FIZlBODnFZwYiVxax\n rztirk@rrpolj.com\n EvcvtoBJBbcwXna\n catusgpir\n USA\n 96374\n vnRut\n rztirk@rrpolj.com\n rztirk@rrpolj.com\n catusgpir\n\n\n\n \n
'} ---------------------- 2010-01-31 08:21:43.000 Found online debuglevel setting: 1 ---------------------- 2010-01-31 08:21:43.000 Setting debuglevel from 0 to 1 ---------------------- 2010-01-31 08:21:43.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-01-31 08:21:43.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-01-31 08:21:43.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-01-31 08:21:43.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-01-31 08:21:44.000 Pickled file is of latest revision. ---------------------- 2010-01-31 08:21:44.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-01-31 08:21:44.000 Original filter string parsed:
2.4.2 2010-01-31 09:21:42.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString FIZlBODnFZwYiVxax rztirk@rrpolj.com EvcvtoBJBbcwXna catusgpir USA 96374 vnRut rztirk@rrpolj.com rztirk@rrpolj.com catusgpir
---------------------- 2010-01-31 08:21:44.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE FIZlBODnFZwYiVxax ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = rztirk@rrpolj.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE EvcvtoBJBbcwXna ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE catusgpir ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 96374 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE vnRut ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = rztirk@rrpolj.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = rztirk@rrpolj.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE catusgpir )) ---------------------- 2010-01-31 08:21:44.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE FIZlBODnFZwYiVxax ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = rztirk@rrpolj.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE EvcvtoBJBbcwXna ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE catusgpir ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 96374 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE vnRut ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = rztirk@rrpolj.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = rztirk@rrpolj.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE catusgpir )) ---------------------- 2010-01-31 08:21:44.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE FIZlBODnFZwYiVxax ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = rztirk@rrpolj.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE EvcvtoBJBbcwXna ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE catusgpir ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 96374 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE vnRut ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = rztirk@rrpolj.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = rztirk@rrpolj.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE catusgpir )) ---------------------- 2010-01-31 08:21:44.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE FIZlBODnFZwYiVxax ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = rztirk@rrpolj.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE EvcvtoBJBbcwXna ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE catusgpir ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 96374 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE vnRut ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = rztirk@rrpolj.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = rztirk@rrpolj.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE catusgpir )) ---------------------- 2010-01-31 08:21:44.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-01-31 08:21:44.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'FIZlBODnFZwYiVxax' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'rztirk@rrpolj.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'EvcvtoBJBbcwXna' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'catusgpir' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '96374' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'vnRut' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'rztirk@rrpolj.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'rztirk@rrpolj.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'catusgpir' ))' ---------------------- 2010-01-31 08:21:44.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "rztirk@rrpolj.com" ---------------------- 2010-01-31 08:21:44.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-02-01 11:07:57.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-02-01 11:07:56.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString EhPCNdnKfwIN KuyFWfEIVvh CCohSLftBNYLKrWLQyW Christopher VBPArAnVuiwrb WwxxTDzomwA ftrFumxFkQpPHrcDFX YohyLbzkKKTxSe rviWoQRmpuLEw Christopher
### ERROR LOG The Logging Results: ---------------------- 2010-02-01 10:07:57.000 Logging started. ---------------------- 2010-02-01 10:07:57.000 BioCASe protocol used. ---------------------- 2010-02-01 10:07:57.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-02-01 10:07:57.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-02-01 10:07:57.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-02-01 10:07:57.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-02-01 10:07:57.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-02-01 11:07:56.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n EhPCNdnKfwIN\n KuyFWfEIVvh\n CCohSLftBNYLKrWLQyW\n Christopher\n VBPArAnVuiwrb\n WwxxTDzomwA\n ftrFumxFkQpPHrcDFX\n YohyLbzkKKTxSe\n rviWoQRmpuLEw\n Christopher\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-02-01 11:07:56.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n EhPCNdnKfwIN\n KuyFWfEIVvh\n CCohSLftBNYLKrWLQyW\n Christopher\n VBPArAnVuiwrb\n WwxxTDzomwA\n ftrFumxFkQpPHrcDFX\n YohyLbzkKKTxSe\n rviWoQRmpuLEw\n Christopher\n\n\n\n \n
'} ---------------------- 2010-02-01 10:07:57.000 Found online debuglevel setting: 1 ---------------------- 2010-02-01 10:07:57.000 Setting debuglevel from 0 to 1 ---------------------- 2010-02-01 10:07:57.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-02-01 10:07:57.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-02-01 10:07:57.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-02-01 10:07:57.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-02-01 10:07:58.000 Pickled file is of latest revision. ---------------------- 2010-02-01 10:07:58.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-02-01 10:07:58.000 Original filter string parsed:
2.4.2 2010-02-01 11:07:56.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString EhPCNdnKfwIN KuyFWfEIVvh CCohSLftBNYLKrWLQyW Christopher VBPArAnVuiwrb WwxxTDzomwA ftrFumxFkQpPHrcDFX YohyLbzkKKTxSe rviWoQRmpuLEw Christopher
---------------------- 2010-02-01 10:07:58.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE EhPCNdnKfwIN ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = KuyFWfEIVvh ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE CCohSLftBNYLKrWLQyW ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Christopher ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE VBPArAnVuiwrb ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE WwxxTDzomwA ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE ftrFumxFkQpPHrcDFX ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = YohyLbzkKKTxSe ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = rviWoQRmpuLEw ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Christopher )) ---------------------- 2010-02-01 10:07:58.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE EhPCNdnKfwIN ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = KuyFWfEIVvh ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE CCohSLftBNYLKrWLQyW ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Christopher ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE VBPArAnVuiwrb ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE WwxxTDzomwA ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE ftrFumxFkQpPHrcDFX ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = YohyLbzkKKTxSe ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = rviWoQRmpuLEw ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Christopher )) ---------------------- 2010-02-01 10:07:58.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE EhPCNdnKfwIN ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = KuyFWfEIVvh ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE CCohSLftBNYLKrWLQyW ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Christopher ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE VBPArAnVuiwrb ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE WwxxTDzomwA ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE ftrFumxFkQpPHrcDFX ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = YohyLbzkKKTxSe ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = rviWoQRmpuLEw ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Christopher )) ---------------------- 2010-02-01 10:07:58.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE EhPCNdnKfwIN ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = KuyFWfEIVvh ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE CCohSLftBNYLKrWLQyW ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Christopher ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE VBPArAnVuiwrb ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE WwxxTDzomwA ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE ftrFumxFkQpPHrcDFX ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = YohyLbzkKKTxSe ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = rviWoQRmpuLEw ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Christopher )) ---------------------- 2010-02-01 10:07:58.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-02-01 10:07:58.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'EhPCNdnKfwIN' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'KuyFWfEIVvh' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'CCohSLftBNYLKrWLQyW' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Christopher' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'VBPArAnVuiwrb' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'WwxxTDzomwA' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'ftrFumxFkQpPHrcDFX' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'YohyLbzkKKTxSe' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'rviWoQRmpuLEw' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Christopher' ))' ---------------------- 2010-02-01 10:07:58.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "KuyFWfEIVvh" ---------------------- 2010-02-01 10:07:58.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-02-01 18:25:21.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-02-01 18:25:21.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString iEUsadIQ IwAaOsTXmoDOAHmTd zIukHyHpcRuMi Stuart jjaKtrcNoT dolqEtmmaWhGqYlwX MptxCfjqCWyoRWgoT NYzTGZFdyP TVuQnpvbTTOpBwAEfEA Stuart
### ERROR LOG The Logging Results: ---------------------- 2010-02-01 17:25:21.000 Logging started. ---------------------- 2010-02-01 17:25:22.000 BioCASe protocol used. ---------------------- 2010-02-01 17:25:22.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-02-01 17:25:22.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-02-01 17:25:22.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-02-01 17:25:22.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-02-01 17:25:22.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-02-01 18:25:21.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n iEUsadIQ\n IwAaOsTXmoDOAHmTd\n zIukHyHpcRuMi\n Stuart\n jjaKtrcNoT\n dolqEtmmaWhGqYlwX\n MptxCfjqCWyoRWgoT\n NYzTGZFdyP\n TVuQnpvbTTOpBwAEfEA\n Stuart\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-02-01 18:25:21.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n iEUsadIQ\n IwAaOsTXmoDOAHmTd\n zIukHyHpcRuMi\n Stuart\n jjaKtrcNoT\n dolqEtmmaWhGqYlwX\n MptxCfjqCWyoRWgoT\n NYzTGZFdyP\n TVuQnpvbTTOpBwAEfEA\n Stuart\n\n\n\n \n
'} ---------------------- 2010-02-01 17:25:22.000 Found online debuglevel setting: 1 ---------------------- 2010-02-01 17:25:22.000 Setting debuglevel from 0 to 1 ---------------------- 2010-02-01 17:25:22.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-02-01 17:25:22.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-02-01 17:25:22.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-02-01 17:25:22.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-02-01 17:25:22.000 Pickled file is of latest revision. ---------------------- 2010-02-01 17:25:22.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-02-01 17:25:22.000 Original filter string parsed:
2.4.2 2010-02-01 18:25:21.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString iEUsadIQ IwAaOsTXmoDOAHmTd zIukHyHpcRuMi Stuart jjaKtrcNoT dolqEtmmaWhGqYlwX MptxCfjqCWyoRWgoT NYzTGZFdyP TVuQnpvbTTOpBwAEfEA Stuart
---------------------- 2010-02-01 17:25:22.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE iEUsadIQ ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = IwAaOsTXmoDOAHmTd ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE zIukHyHpcRuMi ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Stuart ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE jjaKtrcNoT ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE dolqEtmmaWhGqYlwX ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE MptxCfjqCWyoRWgoT ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = NYzTGZFdyP ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = TVuQnpvbTTOpBwAEfEA ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Stuart )) ---------------------- 2010-02-01 17:25:22.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE iEUsadIQ ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = IwAaOsTXmoDOAHmTd ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE zIukHyHpcRuMi ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Stuart ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE jjaKtrcNoT ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE dolqEtmmaWhGqYlwX ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE MptxCfjqCWyoRWgoT ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = NYzTGZFdyP ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = TVuQnpvbTTOpBwAEfEA ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Stuart )) ---------------------- 2010-02-01 17:25:22.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE iEUsadIQ ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = IwAaOsTXmoDOAHmTd ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE zIukHyHpcRuMi ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Stuart ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE jjaKtrcNoT ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE dolqEtmmaWhGqYlwX ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE MptxCfjqCWyoRWgoT ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = NYzTGZFdyP ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = TVuQnpvbTTOpBwAEfEA ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Stuart )) ---------------------- 2010-02-01 17:25:22.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE iEUsadIQ ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = IwAaOsTXmoDOAHmTd ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE zIukHyHpcRuMi ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Stuart ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE jjaKtrcNoT ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE dolqEtmmaWhGqYlwX ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE MptxCfjqCWyoRWgoT ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = NYzTGZFdyP ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = TVuQnpvbTTOpBwAEfEA ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Stuart )) ---------------------- 2010-02-01 17:25:22.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-02-01 17:25:22.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'iEUsadIQ' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'IwAaOsTXmoDOAHmTd' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'zIukHyHpcRuMi' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Stuart' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'jjaKtrcNoT' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'dolqEtmmaWhGqYlwX' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'MptxCfjqCWyoRWgoT' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'NYzTGZFdyP' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'TVuQnpvbTTOpBwAEfEA' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Stuart' ))' ---------------------- 2010-02-01 17:25:22.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "IwAaOsTXmoDOAHmTd" ---------------------- 2010-02-01 17:25:22.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-02-01 22:41:43.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-02-01 22:41:43.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString gSnxsorxaaI niqikz@kiummw.com AsnJMyDHSSiciLRKKv cqyslftgkg USA 986143 xhvR9C <a href="http://otvbamqtekcv.com/">otvbamqtekcv</a>, [url=http://olhzcwccvcka.com/]olhzcwccvcka[/url], [link=http://qbiuotrmuuuv.com/]qbiuotrmuuuv[/link], http://qyrzprvoabxg.com/ niqikz@kiummw.com niqikz@kiummw.com cqyslftgkg
### ERROR LOG The Logging Results: ---------------------- 2010-02-01 21:41:43.000 Logging started. ---------------------- 2010-02-01 21:41:43.000 BioCASe protocol used. ---------------------- 2010-02-01 21:41:43.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-02-01 21:41:43.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-02-01 21:41:43.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-02-01 21:41:43.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-02-01 21:41:43.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-02-01 22:41:43.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n gSnxsorxaaI\n niqikz@kiummw.com\n AsnJMyDHSSiciLRKKv\n cqyslftgkg\n USA\n 986143\n xhvR9C <a href="http://otvbamqtekcv.com/">otvbamqtekcv</a>, [url=http://olhzcwccvcka.com/]olhzcwccvcka[/url], [link=http://qbiuotrmuuuv.com/]qbiuotrmuuuv[/link], http://qyrzprvoabxg.com/\n niqikz@kiummw.com\n niqikz@kiummw.com\n cqyslftgkg\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-02-01 22:41:43.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n gSnxsorxaaI\n niqikz@kiummw.com\n AsnJMyDHSSiciLRKKv\n cqyslftgkg\n USA\n 986143\n xhvR9C <a href="http://otvbamqtekcv.com/">otvbamqtekcv</a>, [url=http://olhzcwccvcka.com/]olhzcwccvcka[/url], [link=http://qbiuotrmuuuv.com/]qbiuotrmuuuv[/link], http://qyrzprvoabxg.com/\n niqikz@kiummw.com\n niqikz@kiummw.com\n cqyslftgkg\n\n\n\n \n
'} ---------------------- 2010-02-01 21:41:43.000 Found online debuglevel setting: 1 ---------------------- 2010-02-01 21:41:43.000 Setting debuglevel from 0 to 1 ---------------------- 2010-02-01 21:41:43.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-02-01 21:41:43.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-02-01 21:41:43.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-02-01 21:41:43.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-02-01 21:41:44.000 Pickled file is of latest revision. ---------------------- 2010-02-01 21:41:44.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-02-01 21:41:44.000 Original filter string parsed:
2.4.2 2010-02-01 22:41:43.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString gSnxsorxaaI niqikz@kiummw.com AsnJMyDHSSiciLRKKv cqyslftgkg USA 986143 xhvR9C <a href="http://otvbamqtekcv.com/">otvbamqtekcv</a>, [url=http://olhzcwccvcka.com/]olhzcwccvcka[/url], [link=http://qbiuotrmuuuv.com/]qbiuotrmuuuv[/link], http://qyrzprvoabxg.com/ niqikz@kiummw.com niqikz@kiummw.com cqyslftgkg
---------------------- 2010-02-01 21:41:44.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE gSnxsorxaaI ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = niqikz@kiummw.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE AsnJMyDHSSiciLRKKv ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE cqyslftgkg ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 986143 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE xhvR9C otvbamqtekcv, [url=http://olhzcwccvcka.com/]olhzcwccvcka[/url], [link=http://qbiuotrmuuuv.com/]qbiuotrmuuuv[/link], http://qyrzprvoabxg.com/ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = niqikz@kiummw.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = niqikz@kiummw.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE cqyslftgkg )) ---------------------- 2010-02-01 21:41:44.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE gSnxsorxaaI ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = niqikz@kiummw.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE AsnJMyDHSSiciLRKKv ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE cqyslftgkg ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 986143 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE xhvR9C otvbamqtekcv, [url=http://olhzcwccvcka.com/]olhzcwccvcka[/url], [link=http://qbiuotrmuuuv.com/]qbiuotrmuuuv[/link], http://qyrzprvoabxg.com/ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = niqikz@kiummw.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = niqikz@kiummw.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE cqyslftgkg )) ---------------------- 2010-02-01 21:41:44.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE gSnxsorxaaI ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = niqikz@kiummw.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE AsnJMyDHSSiciLRKKv ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE cqyslftgkg ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 986143 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE xhvR9C otvbamqtekcv, [url=http://olhzcwccvcka.com/]olhzcwccvcka[/url], [link=http://qbiuotrmuuuv.com/]qbiuotrmuuuv[/link], http://qyrzprvoabxg.com/ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = niqikz@kiummw.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = niqikz@kiummw.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE cqyslftgkg )) ---------------------- 2010-02-01 21:41:44.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE gSnxsorxaaI ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = niqikz@kiummw.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE AsnJMyDHSSiciLRKKv ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE cqyslftgkg ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 986143 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE xhvR9C otvbamqtekcv, [url=http://olhzcwccvcka.com/]olhzcwccvcka[/url], [link=http://qbiuotrmuuuv.com/]qbiuotrmuuuv[/link], http://qyrzprvoabxg.com/ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = niqikz@kiummw.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = niqikz@kiummw.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE cqyslftgkg )) ---------------------- 2010-02-01 21:41:44.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-02-01 21:41:44.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'gSnxsorxaaI' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'niqikz@kiummw.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'AsnJMyDHSSiciLRKKv' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'cqyslftgkg' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '986143' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'xhvR9C otvbamqtekcv, [url=http://olhzcwccvcka.com/]olhzcwccvcka[/url], [link=http://qbiuotrmuuuv.com/]qbiuotrmuuuv[/link], http://qyrzprvoabxg.com/' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'niqikz@kiummw.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'niqikz@kiummw.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'cqyslftgkg' ))' ---------------------- 2010-02-01 21:41:44.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "niqikz@kiummw.com" ---------------------- 2010-02-01 21:41:44.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-02-02 01:45:21.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-02-02 01:45:20.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString orGaWDCqMjgNWBNideJ vaXfGOgDvOfEqcvPZu fswNZvPDunNWKHG Martin B. Bowen qygrQzjIrrsamGFw sLcJjzEvJjgZi WAoWgIdAfwi TEFSinparohlq eekKcods Martin B. Bowen
### ERROR LOG The Logging Results: ---------------------- 2010-02-02 00:45:21.000 Logging started. ---------------------- 2010-02-02 00:45:21.000 BioCASe protocol used. ---------------------- 2010-02-02 00:45:21.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-02-02 00:45:21.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-02-02 00:45:21.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-02-02 00:45:21.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-02-02 00:45:21.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-02-02 01:45:20.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n orGaWDCqMjgNWBNideJ\n vaXfGOgDvOfEqcvPZu\n fswNZvPDunNWKHG\n Martin B. Bowen\n qygrQzjIrrsamGFw\n sLcJjzEvJjgZi\n WAoWgIdAfwi\n TEFSinparohlq\n eekKcods\n Martin B. Bowen\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-02-02 01:45:20.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n orGaWDCqMjgNWBNideJ\n vaXfGOgDvOfEqcvPZu\n fswNZvPDunNWKHG\n Martin B. Bowen\n qygrQzjIrrsamGFw\n sLcJjzEvJjgZi\n WAoWgIdAfwi\n TEFSinparohlq\n eekKcods\n Martin B. Bowen\n\n\n\n \n
'} ---------------------- 2010-02-02 00:45:21.000 Found online debuglevel setting: 1 ---------------------- 2010-02-02 00:45:21.000 Setting debuglevel from 0 to 1 ---------------------- 2010-02-02 00:45:21.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-02-02 00:45:21.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-02-02 00:45:21.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-02-02 00:45:21.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-02-02 00:45:22.000 Pickled file is of latest revision. ---------------------- 2010-02-02 00:45:22.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-02-02 00:45:22.000 Original filter string parsed:
2.4.2 2010-02-02 01:45:20.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString orGaWDCqMjgNWBNideJ vaXfGOgDvOfEqcvPZu fswNZvPDunNWKHG Martin B. Bowen qygrQzjIrrsamGFw sLcJjzEvJjgZi WAoWgIdAfwi TEFSinparohlq eekKcods Martin B. Bowen
---------------------- 2010-02-02 00:45:22.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE orGaWDCqMjgNWBNideJ ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = vaXfGOgDvOfEqcvPZu ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE fswNZvPDunNWKHG ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Martin B. Bowen ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE qygrQzjIrrsamGFw ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE sLcJjzEvJjgZi ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE WAoWgIdAfwi ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = TEFSinparohlq ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = eekKcods ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Martin B. Bowen )) ---------------------- 2010-02-02 00:45:22.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE orGaWDCqMjgNWBNideJ ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = vaXfGOgDvOfEqcvPZu ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE fswNZvPDunNWKHG ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Martin B. Bowen ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE qygrQzjIrrsamGFw ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE sLcJjzEvJjgZi ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE WAoWgIdAfwi ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = TEFSinparohlq ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = eekKcods ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Martin B. Bowen )) ---------------------- 2010-02-02 00:45:22.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE orGaWDCqMjgNWBNideJ ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = vaXfGOgDvOfEqcvPZu ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE fswNZvPDunNWKHG ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Martin B. Bowen ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE qygrQzjIrrsamGFw ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE sLcJjzEvJjgZi ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE WAoWgIdAfwi ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = TEFSinparohlq ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = eekKcods ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Martin B. Bowen )) ---------------------- 2010-02-02 00:45:22.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE orGaWDCqMjgNWBNideJ ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = vaXfGOgDvOfEqcvPZu ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE fswNZvPDunNWKHG ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Martin B. Bowen ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE qygrQzjIrrsamGFw ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE sLcJjzEvJjgZi ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE WAoWgIdAfwi ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = TEFSinparohlq ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = eekKcods ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Martin B. Bowen )) ---------------------- 2010-02-02 00:45:22.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-02-02 00:45:22.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'orGaWDCqMjgNWBNideJ' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'vaXfGOgDvOfEqcvPZu' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'fswNZvPDunNWKHG' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Martin B. Bowen' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'qygrQzjIrrsamGFw' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'sLcJjzEvJjgZi' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'WAoWgIdAfwi' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'TEFSinparohlq' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'eekKcods' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Martin B. Bowen' ))' ---------------------- 2010-02-02 00:45:22.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "vaXfGOgDvOfEqcvPZu" ---------------------- 2010-02-02 00:45:22.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-02-03 15:11:29.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-02-03 15:11:29.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString JDtLWbNxpIeVVdHFo fddnbs@whfivf.com QJQgoPAhCdztwUbnrW vezlmym USA 86875 CpLeR fddnbs@whfivf.com fddnbs@whfivf.com vezlmym
### ERROR LOG The Logging Results: ---------------------- 2010-02-03 14:11:29.000 Logging started. ---------------------- 2010-02-03 14:11:30.000 BioCASe protocol used. ---------------------- 2010-02-03 14:11:30.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-02-03 14:11:30.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-02-03 14:11:30.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-02-03 14:11:30.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-02-03 14:11:30.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-02-03 15:11:29.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n JDtLWbNxpIeVVdHFo\n fddnbs@whfivf.com\n QJQgoPAhCdztwUbnrW\n vezlmym\n USA\n 86875\n CpLeR\n fddnbs@whfivf.com\n fddnbs@whfivf.com\n vezlmym\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-02-03 15:11:29.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n JDtLWbNxpIeVVdHFo\n fddnbs@whfivf.com\n QJQgoPAhCdztwUbnrW\n vezlmym\n USA\n 86875\n CpLeR\n fddnbs@whfivf.com\n fddnbs@whfivf.com\n vezlmym\n\n\n\n \n
'} ---------------------- 2010-02-03 14:11:30.000 Found online debuglevel setting: 1 ---------------------- 2010-02-03 14:11:30.000 Setting debuglevel from 0 to 1 ---------------------- 2010-02-03 14:11:30.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-02-03 14:11:30.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-02-03 14:11:30.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-02-03 14:11:30.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-02-03 14:11:30.000 Pickled file is of latest revision. ---------------------- 2010-02-03 14:11:30.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-02-03 14:11:30.000 Original filter string parsed:
2.4.2 2010-02-03 15:11:29.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString JDtLWbNxpIeVVdHFo fddnbs@whfivf.com QJQgoPAhCdztwUbnrW vezlmym USA 86875 CpLeR fddnbs@whfivf.com fddnbs@whfivf.com vezlmym
---------------------- 2010-02-03 14:11:30.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE JDtLWbNxpIeVVdHFo ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = fddnbs@whfivf.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE QJQgoPAhCdztwUbnrW ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE vezlmym ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 86875 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE CpLeR ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = fddnbs@whfivf.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = fddnbs@whfivf.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE vezlmym )) ---------------------- 2010-02-03 14:11:30.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE JDtLWbNxpIeVVdHFo ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = fddnbs@whfivf.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE QJQgoPAhCdztwUbnrW ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE vezlmym ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 86875 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE CpLeR ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = fddnbs@whfivf.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = fddnbs@whfivf.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE vezlmym )) ---------------------- 2010-02-03 14:11:30.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE JDtLWbNxpIeVVdHFo ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = fddnbs@whfivf.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE QJQgoPAhCdztwUbnrW ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE vezlmym ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 86875 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE CpLeR ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = fddnbs@whfivf.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = fddnbs@whfivf.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE vezlmym )) ---------------------- 2010-02-03 14:11:30.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE JDtLWbNxpIeVVdHFo ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = fddnbs@whfivf.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE QJQgoPAhCdztwUbnrW ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE vezlmym ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 86875 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE CpLeR ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = fddnbs@whfivf.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = fddnbs@whfivf.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE vezlmym )) ---------------------- 2010-02-03 14:11:30.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-02-03 14:11:30.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'JDtLWbNxpIeVVdHFo' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'fddnbs@whfivf.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'QJQgoPAhCdztwUbnrW' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'vezlmym' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '86875' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'CpLeR' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'fddnbs@whfivf.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'fddnbs@whfivf.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'vezlmym' ))' ---------------------- 2010-02-03 14:11:30.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "fddnbs@whfivf.com" ---------------------- 2010-02-03 14:11:31.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-02-05 01:45:09.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-02-05 01:00:13.80 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-02-05 00:45:09.000 Logging started. ---------------------- 2010-02-05 00:45:09.000 BioCASe protocol used. ---------------------- 2010-02-05 00:45:09.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-02-05 00:45:09.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-02-05 00:45:09.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-02-05 00:45:09.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-02-05 00:45:09.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-02-05 01:00:13.80\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-02-05 01:00:13.80\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-02-05 01:00:13.80\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-02-05 00:45:09.000 Found online debuglevel setting: 1 ---------------------- 2010-02-05 00:45:09.000 Setting debuglevel from 0 to 1 ---------------------- 2010-02-05 00:45:09.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-02-05 00:45:10.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-02-05 00:45:10.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-02-05 00:45:10.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-02-05 00:45:10.000 Pickled file is of latest revision. ---------------------- 2010-02-05 00:45:10.000 Original filter string parsed:
0.1 2010-02-05 01:00:13.80 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-02-05 00:45:10.000 Filter created: None ---------------------- 2010-02-05 00:45:10.000 Compressed filter used: None ---------------------- 2010-02-05 00:45:10.000 Counting total matched records with filter=None ---------------------- 2010-02-05 00:45:10.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-02-05 00:45:10.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-02-07 17:07:23.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-02-07 17:07:22.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString vXRXVKTNKDOsFs SKwFlQPGbUF yRagwDswmHMXeGDO Ronald E. Harris PytsTsOILsBobPoPq IAieHydcaDdrZhA QachOytVXtYsT NaePRanILPcRXeVmnx mNjDJhYjsLaIfT Ronald E. Harris
### ERROR LOG The Logging Results: ---------------------- 2010-02-07 16:07:23.000 Logging started. ---------------------- 2010-02-07 16:07:23.000 BioCASe protocol used. ---------------------- 2010-02-07 16:07:23.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-02-07 16:07:23.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-02-07 16:07:23.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-02-07 16:07:23.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-02-07 16:07:23.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-02-07 17:07:22.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n vXRXVKTNKDOsFs\n SKwFlQPGbUF\n yRagwDswmHMXeGDO\n Ronald E. Harris\n PytsTsOILsBobPoPq\n IAieHydcaDdrZhA\n QachOytVXtYsT\n NaePRanILPcRXeVmnx\n mNjDJhYjsLaIfT\n Ronald E. Harris\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-02-07 17:07:22.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n vXRXVKTNKDOsFs\n SKwFlQPGbUF\n yRagwDswmHMXeGDO\n Ronald E. Harris\n PytsTsOILsBobPoPq\n IAieHydcaDdrZhA\n QachOytVXtYsT\n NaePRanILPcRXeVmnx\n mNjDJhYjsLaIfT\n Ronald E. Harris\n\n\n\n \n
'} ---------------------- 2010-02-07 16:07:23.000 Found online debuglevel setting: 1 ---------------------- 2010-02-07 16:07:23.000 Setting debuglevel from 0 to 1 ---------------------- 2010-02-07 16:07:23.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-02-07 16:07:23.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-02-07 16:07:23.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-02-07 16:07:23.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-02-07 16:07:24.000 Pickled file is of latest revision. ---------------------- 2010-02-07 16:07:24.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-02-07 16:07:24.000 Original filter string parsed:
2.4.2 2010-02-07 17:07:22.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString vXRXVKTNKDOsFs SKwFlQPGbUF yRagwDswmHMXeGDO Ronald E. Harris PytsTsOILsBobPoPq IAieHydcaDdrZhA QachOytVXtYsT NaePRanILPcRXeVmnx mNjDJhYjsLaIfT Ronald E. Harris
---------------------- 2010-02-07 16:07:24.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE vXRXVKTNKDOsFs ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = SKwFlQPGbUF ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE yRagwDswmHMXeGDO ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Ronald E. Harris ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE PytsTsOILsBobPoPq ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE IAieHydcaDdrZhA ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE QachOytVXtYsT ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = NaePRanILPcRXeVmnx ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = mNjDJhYjsLaIfT ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Ronald E. Harris )) ---------------------- 2010-02-07 16:07:24.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE vXRXVKTNKDOsFs ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = SKwFlQPGbUF ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE yRagwDswmHMXeGDO ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Ronald E. Harris ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE PytsTsOILsBobPoPq ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE IAieHydcaDdrZhA ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE QachOytVXtYsT ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = NaePRanILPcRXeVmnx ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = mNjDJhYjsLaIfT ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Ronald E. Harris )) ---------------------- 2010-02-07 16:07:24.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE vXRXVKTNKDOsFs ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = SKwFlQPGbUF ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE yRagwDswmHMXeGDO ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Ronald E. Harris ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE PytsTsOILsBobPoPq ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE IAieHydcaDdrZhA ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE QachOytVXtYsT ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = NaePRanILPcRXeVmnx ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = mNjDJhYjsLaIfT ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Ronald E. Harris )) ---------------------- 2010-02-07 16:07:24.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE vXRXVKTNKDOsFs ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = SKwFlQPGbUF ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE yRagwDswmHMXeGDO ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Ronald E. Harris ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE PytsTsOILsBobPoPq ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE IAieHydcaDdrZhA ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE QachOytVXtYsT ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = NaePRanILPcRXeVmnx ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = mNjDJhYjsLaIfT ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Ronald E. Harris )) ---------------------- 2010-02-07 16:07:24.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-02-07 16:07:24.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'vXRXVKTNKDOsFs' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'SKwFlQPGbUF' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'yRagwDswmHMXeGDO' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Ronald E. Harris' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'PytsTsOILsBobPoPq' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'IAieHydcaDdrZhA' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'QachOytVXtYsT' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'NaePRanILPcRXeVmnx' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'mNjDJhYjsLaIfT' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Ronald E. Harris' ))' ---------------------- 2010-02-07 16:07:24.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "SKwFlQPGbUF" ---------------------- 2010-02-07 16:07:24.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-02-08 07:13:05.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2010-02-08 06:13:05.000 Logging started. ---------------------- 2010-02-08 06:13:05.000 BioCASe protocol used. ---------------------- 2010-02-08 06:13:05.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-02-08 06:13:05.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-02-08 06:13:05.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-02-08 06:13:05.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2010-02-08 06:13:05.000 Unknown request type! Default to capabilities. ---------------------- 2010-02-08 06:13:05.000 Destination hostname could not be determined ---------------------- 2010-02-08 06:13:05.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2010-02-08 06:13:05.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2010-02-08 06:13:05.000 Reset CMF convenience cache data hash. ---------------------- 2010-02-08 06:13:05.000 Loading CMF from the source XML file. ---------------------- 2010-02-08 06:13:05.000 CMF Version 2.1 detected. ---------------------- 2010-02-08 06:13:05.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2010-02-08 06:13:05.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2010-02-08 06:13:05.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-02-08 06:13:06.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-02-08 06:13:06.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-02-08 06:13:06.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-02-08 06:13:06.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-02-08 06:13:06.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-02-09 17:52:58.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-02-09 17:52:55.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString Elvcgjeu arylgq@bnhavs.com QBCcGvpzEZns lyrgtoyts USA 11488 r4bhPm arylgq@bnhavs.com arylgq@bnhavs.com lyrgtoyts
### ERROR LOG The Logging Results: ---------------------- 2010-02-09 16:52:58.000 Logging started. ---------------------- 2010-02-09 16:52:58.000 BioCASe protocol used. ---------------------- 2010-02-09 16:52:58.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-02-09 16:52:58.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-02-09 16:52:58.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-02-09 16:52:58.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-02-09 16:52:58.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-02-09 17:52:55.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n Elvcgjeu\n arylgq@bnhavs.com\n QBCcGvpzEZns\n lyrgtoyts\n USA\n 11488\n r4bhPm\n arylgq@bnhavs.com\n arylgq@bnhavs.com\n lyrgtoyts\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-02-09 17:52:55.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n Elvcgjeu\n arylgq@bnhavs.com\n QBCcGvpzEZns\n lyrgtoyts\n USA\n 11488\n r4bhPm\n arylgq@bnhavs.com\n arylgq@bnhavs.com\n lyrgtoyts\n\n\n\n \n
'} ---------------------- 2010-02-09 16:52:58.000 Found online debuglevel setting: 1 ---------------------- 2010-02-09 16:52:58.000 Setting debuglevel from 0 to 1 ---------------------- 2010-02-09 16:52:58.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-02-09 16:52:58.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-02-09 16:52:58.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-02-09 16:52:58.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-02-09 16:52:59.000 Pickled file is of latest revision. ---------------------- 2010-02-09 16:52:59.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-02-09 16:52:59.000 Original filter string parsed:
2.4.2 2010-02-09 17:52:55.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString Elvcgjeu arylgq@bnhavs.com QBCcGvpzEZns lyrgtoyts USA 11488 r4bhPm arylgq@bnhavs.com arylgq@bnhavs.com lyrgtoyts
---------------------- 2010-02-09 16:52:59.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE Elvcgjeu ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = arylgq@bnhavs.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE QBCcGvpzEZns ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE lyrgtoyts ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 11488 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE r4bhPm ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = arylgq@bnhavs.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = arylgq@bnhavs.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE lyrgtoyts )) ---------------------- 2010-02-09 16:52:59.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE Elvcgjeu ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = arylgq@bnhavs.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE QBCcGvpzEZns ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE lyrgtoyts ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 11488 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE r4bhPm ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = arylgq@bnhavs.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = arylgq@bnhavs.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE lyrgtoyts )) ---------------------- 2010-02-09 16:52:59.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE Elvcgjeu ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = arylgq@bnhavs.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE QBCcGvpzEZns ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE lyrgtoyts ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 11488 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE r4bhPm ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = arylgq@bnhavs.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = arylgq@bnhavs.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE lyrgtoyts )) ---------------------- 2010-02-09 16:52:59.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE Elvcgjeu ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = arylgq@bnhavs.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE QBCcGvpzEZns ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE lyrgtoyts ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 11488 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE r4bhPm ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = arylgq@bnhavs.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = arylgq@bnhavs.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE lyrgtoyts )) ---------------------- 2010-02-09 16:52:59.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-02-09 16:52:59.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'Elvcgjeu' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'arylgq@bnhavs.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'QBCcGvpzEZns' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'lyrgtoyts' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '11488' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'r4bhPm' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'arylgq@bnhavs.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'arylgq@bnhavs.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'lyrgtoyts' ))' ---------------------- 2010-02-09 16:52:59.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "arylgq@bnhavs.com" ---------------------- 2010-02-09 16:52:59.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-02-10 00:23:05.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-02-10 00:23:04.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString EBsbdYtKpzU ltLjWbaDwF JxCyXbwRHrYoHkoFk Sidney D. Drake SATcnChl kMoMJpKgKiCtQbtJr lKeNTjIGNKhNlPyb OromGboANyteIxXUXar IuWpUTAboCDFFAT Sidney D. Drake
### ERROR LOG The Logging Results: ---------------------- 2010-02-09 23:23:05.000 Logging started. ---------------------- 2010-02-09 23:23:05.000 BioCASe protocol used. ---------------------- 2010-02-09 23:23:05.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-02-09 23:23:05.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-02-09 23:23:05.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-02-09 23:23:05.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-02-09 23:23:05.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-02-10 00:23:04.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n EBsbdYtKpzU\n ltLjWbaDwF\n JxCyXbwRHrYoHkoFk\n Sidney D. Drake\n SATcnChl\n kMoMJpKgKiCtQbtJr\n lKeNTjIGNKhNlPyb\n OromGboANyteIxXUXar\n IuWpUTAboCDFFAT\n Sidney D. Drake\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-02-10 00:23:04.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n EBsbdYtKpzU\n ltLjWbaDwF\n JxCyXbwRHrYoHkoFk\n Sidney D. Drake\n SATcnChl\n kMoMJpKgKiCtQbtJr\n lKeNTjIGNKhNlPyb\n OromGboANyteIxXUXar\n IuWpUTAboCDFFAT\n Sidney D. Drake\n\n\n\n \n
'} ---------------------- 2010-02-09 23:23:05.000 Found online debuglevel setting: 1 ---------------------- 2010-02-09 23:23:05.000 Setting debuglevel from 0 to 1 ---------------------- 2010-02-09 23:23:05.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-02-09 23:23:05.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-02-09 23:23:05.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-02-09 23:23:05.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-02-09 23:23:06.000 Pickled file is of latest revision. ---------------------- 2010-02-09 23:23:06.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-02-09 23:23:06.000 Original filter string parsed:
2.4.2 2010-02-10 00:23:04.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString EBsbdYtKpzU ltLjWbaDwF JxCyXbwRHrYoHkoFk Sidney D. Drake SATcnChl kMoMJpKgKiCtQbtJr lKeNTjIGNKhNlPyb OromGboANyteIxXUXar IuWpUTAboCDFFAT Sidney D. Drake
---------------------- 2010-02-09 23:23:06.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE EBsbdYtKpzU ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ltLjWbaDwF ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE JxCyXbwRHrYoHkoFk ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Sidney D. Drake ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE SATcnChl ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE kMoMJpKgKiCtQbtJr ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE lKeNTjIGNKhNlPyb ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = OromGboANyteIxXUXar ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = IuWpUTAboCDFFAT ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Sidney D. Drake )) ---------------------- 2010-02-09 23:23:06.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE EBsbdYtKpzU ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ltLjWbaDwF ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE JxCyXbwRHrYoHkoFk ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Sidney D. Drake ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE SATcnChl ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE kMoMJpKgKiCtQbtJr ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE lKeNTjIGNKhNlPyb ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = OromGboANyteIxXUXar ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = IuWpUTAboCDFFAT ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Sidney D. Drake )) ---------------------- 2010-02-09 23:23:06.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE EBsbdYtKpzU ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ltLjWbaDwF ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE JxCyXbwRHrYoHkoFk ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Sidney D. Drake ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE SATcnChl ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE kMoMJpKgKiCtQbtJr ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE lKeNTjIGNKhNlPyb ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = OromGboANyteIxXUXar ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = IuWpUTAboCDFFAT ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Sidney D. Drake )) ---------------------- 2010-02-09 23:23:06.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE EBsbdYtKpzU ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ltLjWbaDwF ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE JxCyXbwRHrYoHkoFk ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Sidney D. Drake ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE SATcnChl ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE kMoMJpKgKiCtQbtJr ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE lKeNTjIGNKhNlPyb ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = OromGboANyteIxXUXar ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = IuWpUTAboCDFFAT ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Sidney D. Drake )) ---------------------- 2010-02-09 23:23:06.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-02-09 23:23:06.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'EBsbdYtKpzU' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'ltLjWbaDwF' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'JxCyXbwRHrYoHkoFk' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Sidney D. Drake' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'SATcnChl' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'kMoMJpKgKiCtQbtJr' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'lKeNTjIGNKhNlPyb' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'OromGboANyteIxXUXar' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'IuWpUTAboCDFFAT' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Sidney D. Drake' ))' ---------------------- 2010-02-09 23:23:06.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "ltLjWbaDwF" ---------------------- 2010-02-09 23:23:06.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-02-10 00:23:10.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-02-10 00:23:09.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString EBsbdYtKpzU ltLjWbaDwF JxCyXbwRHrYoHkoFk Sidney D. Drake SATcnChl kMoMJpKgKiCtQbtJr lKeNTjIGNKhNlPyb OromGboANyteIxXUXar IuWpUTAboCDFFAT Sidney D. Drake
### ERROR LOG The Logging Results: ---------------------- 2010-02-09 23:23:10.000 Logging started. ---------------------- 2010-02-09 23:23:10.000 BioCASe protocol used. ---------------------- 2010-02-09 23:23:10.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-02-09 23:23:10.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-02-09 23:23:10.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-02-09 23:23:10.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-02-09 23:23:10.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-02-10 00:23:09.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n EBsbdYtKpzU\n ltLjWbaDwF\n JxCyXbwRHrYoHkoFk\n Sidney D. Drake\n SATcnChl\n kMoMJpKgKiCtQbtJr\n lKeNTjIGNKhNlPyb\n OromGboANyteIxXUXar\n IuWpUTAboCDFFAT\n Sidney D. Drake\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-02-10 00:23:09.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n EBsbdYtKpzU\n ltLjWbaDwF\n JxCyXbwRHrYoHkoFk\n Sidney D. Drake\n SATcnChl\n kMoMJpKgKiCtQbtJr\n lKeNTjIGNKhNlPyb\n OromGboANyteIxXUXar\n IuWpUTAboCDFFAT\n Sidney D. Drake\n\n\n\n \n
'} ---------------------- 2010-02-09 23:23:10.000 Found online debuglevel setting: 1 ---------------------- 2010-02-09 23:23:10.000 Setting debuglevel from 0 to 1 ---------------------- 2010-02-09 23:23:10.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-02-09 23:23:10.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-02-09 23:23:10.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-02-09 23:23:10.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-02-09 23:23:10.000 Pickled file is of latest revision. ---------------------- 2010-02-09 23:23:10.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-02-09 23:23:10.000 Original filter string parsed:
2.4.2 2010-02-10 00:23:09.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString EBsbdYtKpzU ltLjWbaDwF JxCyXbwRHrYoHkoFk Sidney D. Drake SATcnChl kMoMJpKgKiCtQbtJr lKeNTjIGNKhNlPyb OromGboANyteIxXUXar IuWpUTAboCDFFAT Sidney D. Drake
---------------------- 2010-02-09 23:23:10.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE EBsbdYtKpzU ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ltLjWbaDwF ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE JxCyXbwRHrYoHkoFk ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Sidney D. Drake ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE SATcnChl ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE kMoMJpKgKiCtQbtJr ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE lKeNTjIGNKhNlPyb ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = OromGboANyteIxXUXar ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = IuWpUTAboCDFFAT ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Sidney D. Drake )) ---------------------- 2010-02-09 23:23:10.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE EBsbdYtKpzU ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ltLjWbaDwF ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE JxCyXbwRHrYoHkoFk ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Sidney D. Drake ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE SATcnChl ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE kMoMJpKgKiCtQbtJr ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE lKeNTjIGNKhNlPyb ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = OromGboANyteIxXUXar ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = IuWpUTAboCDFFAT ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Sidney D. Drake )) ---------------------- 2010-02-09 23:23:10.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE EBsbdYtKpzU ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ltLjWbaDwF ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE JxCyXbwRHrYoHkoFk ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Sidney D. Drake ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE SATcnChl ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE kMoMJpKgKiCtQbtJr ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE lKeNTjIGNKhNlPyb ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = OromGboANyteIxXUXar ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = IuWpUTAboCDFFAT ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Sidney D. Drake )) ---------------------- 2010-02-09 23:23:10.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE EBsbdYtKpzU ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ltLjWbaDwF ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE JxCyXbwRHrYoHkoFk ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Sidney D. Drake ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE SATcnChl ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE kMoMJpKgKiCtQbtJr ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE lKeNTjIGNKhNlPyb ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = OromGboANyteIxXUXar ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = IuWpUTAboCDFFAT ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Sidney D. Drake )) ---------------------- 2010-02-09 23:23:10.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-02-09 23:23:10.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'EBsbdYtKpzU' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'ltLjWbaDwF' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'JxCyXbwRHrYoHkoFk' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Sidney D. Drake' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'SATcnChl' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'kMoMJpKgKiCtQbtJr' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'lKeNTjIGNKhNlPyb' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'OromGboANyteIxXUXar' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'IuWpUTAboCDFFAT' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Sidney D. Drake' ))' ---------------------- 2010-02-09 23:23:10.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "ltLjWbaDwF" ---------------------- 2010-02-09 23:23:10.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-02-10 00:23:14.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-02-10 00:23:13.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString EBsbdYtKpzU ltLjWbaDwF JxCyXbwRHrYoHkoFk Sidney D. Drake SATcnChl kMoMJpKgKiCtQbtJr lKeNTjIGNKhNlPyb OromGboANyteIxXUXar IuWpUTAboCDFFAT Sidney D. Drake
### ERROR LOG The Logging Results: ---------------------- 2010-02-09 23:23:14.000 Logging started. ---------------------- 2010-02-09 23:23:14.000 BioCASe protocol used. ---------------------- 2010-02-09 23:23:14.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-02-09 23:23:14.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-02-09 23:23:14.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-02-09 23:23:14.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-02-09 23:23:14.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-02-10 00:23:13.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n EBsbdYtKpzU\n ltLjWbaDwF\n JxCyXbwRHrYoHkoFk\n Sidney D. Drake\n SATcnChl\n kMoMJpKgKiCtQbtJr\n lKeNTjIGNKhNlPyb\n OromGboANyteIxXUXar\n IuWpUTAboCDFFAT\n Sidney D. Drake\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-02-10 00:23:13.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n EBsbdYtKpzU\n ltLjWbaDwF\n JxCyXbwRHrYoHkoFk\n Sidney D. Drake\n SATcnChl\n kMoMJpKgKiCtQbtJr\n lKeNTjIGNKhNlPyb\n OromGboANyteIxXUXar\n IuWpUTAboCDFFAT\n Sidney D. Drake\n\n\n\n \n
'} ---------------------- 2010-02-09 23:23:14.000 Found online debuglevel setting: 1 ---------------------- 2010-02-09 23:23:14.000 Setting debuglevel from 0 to 1 ---------------------- 2010-02-09 23:23:14.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-02-09 23:23:14.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-02-09 23:23:14.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-02-09 23:23:14.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-02-09 23:23:14.000 Pickled file is of latest revision. ---------------------- 2010-02-09 23:23:14.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-02-09 23:23:14.000 Original filter string parsed:
2.4.2 2010-02-10 00:23:13.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString EBsbdYtKpzU ltLjWbaDwF JxCyXbwRHrYoHkoFk Sidney D. Drake SATcnChl kMoMJpKgKiCtQbtJr lKeNTjIGNKhNlPyb OromGboANyteIxXUXar IuWpUTAboCDFFAT Sidney D. Drake
---------------------- 2010-02-09 23:23:14.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE EBsbdYtKpzU ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ltLjWbaDwF ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE JxCyXbwRHrYoHkoFk ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Sidney D. Drake ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE SATcnChl ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE kMoMJpKgKiCtQbtJr ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE lKeNTjIGNKhNlPyb ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = OromGboANyteIxXUXar ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = IuWpUTAboCDFFAT ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Sidney D. Drake )) ---------------------- 2010-02-09 23:23:14.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE EBsbdYtKpzU ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ltLjWbaDwF ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE JxCyXbwRHrYoHkoFk ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Sidney D. Drake ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE SATcnChl ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE kMoMJpKgKiCtQbtJr ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE lKeNTjIGNKhNlPyb ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = OromGboANyteIxXUXar ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = IuWpUTAboCDFFAT ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Sidney D. Drake )) ---------------------- 2010-02-09 23:23:14.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE EBsbdYtKpzU ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ltLjWbaDwF ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE JxCyXbwRHrYoHkoFk ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Sidney D. Drake ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE SATcnChl ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE kMoMJpKgKiCtQbtJr ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE lKeNTjIGNKhNlPyb ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = OromGboANyteIxXUXar ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = IuWpUTAboCDFFAT ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Sidney D. Drake )) ---------------------- 2010-02-09 23:23:14.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE EBsbdYtKpzU ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ltLjWbaDwF ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE JxCyXbwRHrYoHkoFk ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Sidney D. Drake ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE SATcnChl ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE kMoMJpKgKiCtQbtJr ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE lKeNTjIGNKhNlPyb ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = OromGboANyteIxXUXar ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = IuWpUTAboCDFFAT ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Sidney D. Drake )) ---------------------- 2010-02-09 23:23:14.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-02-09 23:23:14.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'EBsbdYtKpzU' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'ltLjWbaDwF' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'JxCyXbwRHrYoHkoFk' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Sidney D. Drake' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'SATcnChl' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'kMoMJpKgKiCtQbtJr' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'lKeNTjIGNKhNlPyb' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'OromGboANyteIxXUXar' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'IuWpUTAboCDFFAT' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Sidney D. Drake' ))' ---------------------- 2010-02-09 23:23:14.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "ltLjWbaDwF" ---------------------- 2010-02-09 23:23:14.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-02-10 16:56:26.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-02-10 16:56:25.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString TEHLELII ijjgPreeQUoV aHcnmQaGomRadLOd Stacy D. Taylor uqkHESvJAOCAKiBX jeJgxCwWClC KbctthfgUgvUMNjDQR nRWdlofYjVFwMjAsgJW SblKxZBhXqKv Stacy D. Taylor
### ERROR LOG The Logging Results: ---------------------- 2010-02-10 15:56:26.000 Logging started. ---------------------- 2010-02-10 15:56:26.000 BioCASe protocol used. ---------------------- 2010-02-10 15:56:26.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-02-10 15:56:26.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-02-10 15:56:26.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-02-10 15:56:26.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-02-10 15:56:26.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-02-10 16:56:25.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n TEHLELII\n ijjgPreeQUoV\n aHcnmQaGomRadLOd\n Stacy D. Taylor\n uqkHESvJAOCAKiBX\n jeJgxCwWClC\n KbctthfgUgvUMNjDQR\n nRWdlofYjVFwMjAsgJW\n SblKxZBhXqKv\n Stacy D. Taylor\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-02-10 16:56:25.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n TEHLELII\n ijjgPreeQUoV\n aHcnmQaGomRadLOd\n Stacy D. Taylor\n uqkHESvJAOCAKiBX\n jeJgxCwWClC\n KbctthfgUgvUMNjDQR\n nRWdlofYjVFwMjAsgJW\n SblKxZBhXqKv\n Stacy D. Taylor\n\n\n\n \n
'} ---------------------- 2010-02-10 15:56:26.000 Found online debuglevel setting: 1 ---------------------- 2010-02-10 15:56:26.000 Setting debuglevel from 0 to 1 ---------------------- 2010-02-10 15:56:26.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-02-10 15:56:26.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-02-10 15:56:26.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-02-10 15:56:26.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-02-10 15:56:27.000 Pickled file is of latest revision. ---------------------- 2010-02-10 15:56:27.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-02-10 15:56:27.000 Original filter string parsed:
2.4.2 2010-02-10 16:56:25.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString TEHLELII ijjgPreeQUoV aHcnmQaGomRadLOd Stacy D. Taylor uqkHESvJAOCAKiBX jeJgxCwWClC KbctthfgUgvUMNjDQR nRWdlofYjVFwMjAsgJW SblKxZBhXqKv Stacy D. Taylor
---------------------- 2010-02-10 15:56:27.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE TEHLELII ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ijjgPreeQUoV ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE aHcnmQaGomRadLOd ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Stacy D. Taylor ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE uqkHESvJAOCAKiBX ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE jeJgxCwWClC ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE KbctthfgUgvUMNjDQR ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = nRWdlofYjVFwMjAsgJW ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = SblKxZBhXqKv ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Stacy D. Taylor )) ---------------------- 2010-02-10 15:56:27.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE TEHLELII ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ijjgPreeQUoV ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE aHcnmQaGomRadLOd ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Stacy D. Taylor ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE uqkHESvJAOCAKiBX ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE jeJgxCwWClC ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE KbctthfgUgvUMNjDQR ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = nRWdlofYjVFwMjAsgJW ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = SblKxZBhXqKv ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Stacy D. Taylor )) ---------------------- 2010-02-10 15:56:27.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE TEHLELII ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ijjgPreeQUoV ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE aHcnmQaGomRadLOd ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Stacy D. Taylor ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE uqkHESvJAOCAKiBX ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE jeJgxCwWClC ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE KbctthfgUgvUMNjDQR ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = nRWdlofYjVFwMjAsgJW ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = SblKxZBhXqKv ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Stacy D. Taylor )) ---------------------- 2010-02-10 15:56:27.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE TEHLELII ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ijjgPreeQUoV ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE aHcnmQaGomRadLOd ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Stacy D. Taylor ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE uqkHESvJAOCAKiBX ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE jeJgxCwWClC ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE KbctthfgUgvUMNjDQR ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = nRWdlofYjVFwMjAsgJW ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = SblKxZBhXqKv ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Stacy D. Taylor )) ---------------------- 2010-02-10 15:56:27.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-02-10 15:56:27.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'TEHLELII' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'ijjgPreeQUoV' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'aHcnmQaGomRadLOd' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Stacy D. Taylor' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'uqkHESvJAOCAKiBX' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'jeJgxCwWClC' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'KbctthfgUgvUMNjDQR' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'nRWdlofYjVFwMjAsgJW' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'SblKxZBhXqKv' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Stacy D. Taylor' ))' ---------------------- 2010-02-10 15:56:27.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "ijjgPreeQUoV" ---------------------- 2010-02-10 15:56:27.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-02-10 16:56:31.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-02-10 16:56:30.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString TEHLELII ijjgPreeQUoV aHcnmQaGomRadLOd Stacy D. Taylor uqkHESvJAOCAKiBX jeJgxCwWClC KbctthfgUgvUMNjDQR nRWdlofYjVFwMjAsgJW SblKxZBhXqKv Stacy D. Taylor
### ERROR LOG The Logging Results: ---------------------- 2010-02-10 15:56:31.000 Logging started. ---------------------- 2010-02-10 15:56:31.000 BioCASe protocol used. ---------------------- 2010-02-10 15:56:31.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-02-10 15:56:31.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-02-10 15:56:31.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-02-10 15:56:31.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-02-10 15:56:31.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-02-10 16:56:30.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n TEHLELII\n ijjgPreeQUoV\n aHcnmQaGomRadLOd\n Stacy D. Taylor\n uqkHESvJAOCAKiBX\n jeJgxCwWClC\n KbctthfgUgvUMNjDQR\n nRWdlofYjVFwMjAsgJW\n SblKxZBhXqKv\n Stacy D. Taylor\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-02-10 16:56:30.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n TEHLELII\n ijjgPreeQUoV\n aHcnmQaGomRadLOd\n Stacy D. Taylor\n uqkHESvJAOCAKiBX\n jeJgxCwWClC\n KbctthfgUgvUMNjDQR\n nRWdlofYjVFwMjAsgJW\n SblKxZBhXqKv\n Stacy D. Taylor\n\n\n\n \n
'} ---------------------- 2010-02-10 15:56:31.000 Found online debuglevel setting: 1 ---------------------- 2010-02-10 15:56:31.000 Setting debuglevel from 0 to 1 ---------------------- 2010-02-10 15:56:31.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-02-10 15:56:31.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-02-10 15:56:31.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-02-10 15:56:31.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-02-10 15:56:32.000 Pickled file is of latest revision. ---------------------- 2010-02-10 15:56:32.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-02-10 15:56:32.000 Original filter string parsed:
2.4.2 2010-02-10 16:56:30.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString TEHLELII ijjgPreeQUoV aHcnmQaGomRadLOd Stacy D. Taylor uqkHESvJAOCAKiBX jeJgxCwWClC KbctthfgUgvUMNjDQR nRWdlofYjVFwMjAsgJW SblKxZBhXqKv Stacy D. Taylor
---------------------- 2010-02-10 15:56:32.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE TEHLELII ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ijjgPreeQUoV ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE aHcnmQaGomRadLOd ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Stacy D. Taylor ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE uqkHESvJAOCAKiBX ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE jeJgxCwWClC ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE KbctthfgUgvUMNjDQR ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = nRWdlofYjVFwMjAsgJW ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = SblKxZBhXqKv ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Stacy D. Taylor )) ---------------------- 2010-02-10 15:56:32.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE TEHLELII ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ijjgPreeQUoV ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE aHcnmQaGomRadLOd ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Stacy D. Taylor ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE uqkHESvJAOCAKiBX ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE jeJgxCwWClC ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE KbctthfgUgvUMNjDQR ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = nRWdlofYjVFwMjAsgJW ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = SblKxZBhXqKv ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Stacy D. Taylor )) ---------------------- 2010-02-10 15:56:32.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE TEHLELII ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ijjgPreeQUoV ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE aHcnmQaGomRadLOd ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Stacy D. Taylor ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE uqkHESvJAOCAKiBX ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE jeJgxCwWClC ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE KbctthfgUgvUMNjDQR ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = nRWdlofYjVFwMjAsgJW ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = SblKxZBhXqKv ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Stacy D. Taylor )) ---------------------- 2010-02-10 15:56:32.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE TEHLELII ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ijjgPreeQUoV ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE aHcnmQaGomRadLOd ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Stacy D. Taylor ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE uqkHESvJAOCAKiBX ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE jeJgxCwWClC ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE KbctthfgUgvUMNjDQR ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = nRWdlofYjVFwMjAsgJW ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = SblKxZBhXqKv ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Stacy D. Taylor )) ---------------------- 2010-02-10 15:56:32.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-02-10 15:56:32.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'TEHLELII' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'ijjgPreeQUoV' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'aHcnmQaGomRadLOd' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Stacy D. Taylor' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'uqkHESvJAOCAKiBX' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'jeJgxCwWClC' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'KbctthfgUgvUMNjDQR' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'nRWdlofYjVFwMjAsgJW' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'SblKxZBhXqKv' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Stacy D. Taylor' ))' ---------------------- 2010-02-10 15:56:32.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "ijjgPreeQUoV" ---------------------- 2010-02-10 15:56:32.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-02-10 16:56:35.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-02-10 16:56:35.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString TEHLELII ijjgPreeQUoV aHcnmQaGomRadLOd Stacy D. Taylor uqkHESvJAOCAKiBX jeJgxCwWClC KbctthfgUgvUMNjDQR nRWdlofYjVFwMjAsgJW SblKxZBhXqKv Stacy D. Taylor
### ERROR LOG The Logging Results: ---------------------- 2010-02-10 15:56:35.000 Logging started. ---------------------- 2010-02-10 15:56:35.000 BioCASe protocol used. ---------------------- 2010-02-10 15:56:35.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-02-10 15:56:35.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-02-10 15:56:35.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-02-10 15:56:35.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-02-10 15:56:35.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-02-10 16:56:35.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n TEHLELII\n ijjgPreeQUoV\n aHcnmQaGomRadLOd\n Stacy D. Taylor\n uqkHESvJAOCAKiBX\n jeJgxCwWClC\n KbctthfgUgvUMNjDQR\n nRWdlofYjVFwMjAsgJW\n SblKxZBhXqKv\n Stacy D. Taylor\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-02-10 16:56:35.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n TEHLELII\n ijjgPreeQUoV\n aHcnmQaGomRadLOd\n Stacy D. Taylor\n uqkHESvJAOCAKiBX\n jeJgxCwWClC\n KbctthfgUgvUMNjDQR\n nRWdlofYjVFwMjAsgJW\n SblKxZBhXqKv\n Stacy D. Taylor\n\n\n\n \n
'} ---------------------- 2010-02-10 15:56:35.000 Found online debuglevel setting: 1 ---------------------- 2010-02-10 15:56:35.000 Setting debuglevel from 0 to 1 ---------------------- 2010-02-10 15:56:35.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-02-10 15:56:35.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-02-10 15:56:35.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-02-10 15:56:35.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-02-10 15:56:36.000 Pickled file is of latest revision. ---------------------- 2010-02-10 15:56:36.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-02-10 15:56:36.000 Original filter string parsed:
2.4.2 2010-02-10 16:56:35.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString TEHLELII ijjgPreeQUoV aHcnmQaGomRadLOd Stacy D. Taylor uqkHESvJAOCAKiBX jeJgxCwWClC KbctthfgUgvUMNjDQR nRWdlofYjVFwMjAsgJW SblKxZBhXqKv Stacy D. Taylor
---------------------- 2010-02-10 15:56:36.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE TEHLELII ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ijjgPreeQUoV ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE aHcnmQaGomRadLOd ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Stacy D. Taylor ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE uqkHESvJAOCAKiBX ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE jeJgxCwWClC ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE KbctthfgUgvUMNjDQR ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = nRWdlofYjVFwMjAsgJW ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = SblKxZBhXqKv ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Stacy D. Taylor )) ---------------------- 2010-02-10 15:56:36.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE TEHLELII ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ijjgPreeQUoV ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE aHcnmQaGomRadLOd ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Stacy D. Taylor ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE uqkHESvJAOCAKiBX ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE jeJgxCwWClC ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE KbctthfgUgvUMNjDQR ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = nRWdlofYjVFwMjAsgJW ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = SblKxZBhXqKv ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Stacy D. Taylor )) ---------------------- 2010-02-10 15:56:36.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE TEHLELII ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ijjgPreeQUoV ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE aHcnmQaGomRadLOd ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Stacy D. Taylor ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE uqkHESvJAOCAKiBX ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE jeJgxCwWClC ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE KbctthfgUgvUMNjDQR ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = nRWdlofYjVFwMjAsgJW ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = SblKxZBhXqKv ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Stacy D. Taylor )) ---------------------- 2010-02-10 15:56:36.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE TEHLELII ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ijjgPreeQUoV ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE aHcnmQaGomRadLOd ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Stacy D. Taylor ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE uqkHESvJAOCAKiBX ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE jeJgxCwWClC ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE KbctthfgUgvUMNjDQR ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = nRWdlofYjVFwMjAsgJW ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = SblKxZBhXqKv ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Stacy D. Taylor )) ---------------------- 2010-02-10 15:56:36.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-02-10 15:56:36.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'TEHLELII' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'ijjgPreeQUoV' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'aHcnmQaGomRadLOd' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Stacy D. Taylor' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'uqkHESvJAOCAKiBX' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'jeJgxCwWClC' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'KbctthfgUgvUMNjDQR' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'nRWdlofYjVFwMjAsgJW' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'SblKxZBhXqKv' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Stacy D. Taylor' ))' ---------------------- 2010-02-10 15:56:36.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "ijjgPreeQUoV" ---------------------- 2010-02-10 15:56:36.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-02-10 21:55:00.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2010-02-10 20:55:00.000 Logging started. ---------------------- 2010-02-10 20:55:00.000 BioCASe protocol used. ---------------------- 2010-02-10 20:55:00.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-02-10 20:55:00.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-02-10 20:55:00.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-02-10 20:55:00.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2010-02-10 20:55:00.000 Unknown request type! Default to capabilities. ---------------------- 2010-02-10 20:55:00.000 Destination hostname could not be determined ---------------------- 2010-02-10 20:55:00.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2010-02-10 20:55:00.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2010-02-10 20:55:00.000 Reset CMF convenience cache data hash. ---------------------- 2010-02-10 20:55:00.000 Loading CMF from the source XML file. ---------------------- 2010-02-10 20:55:00.000 CMF Version 2.1 detected. ---------------------- 2010-02-10 20:55:00.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2010-02-10 20:55:00.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2010-02-10 20:55:00.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-02-10 20:55:00.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-02-10 20:55:00.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-02-10 20:55:00.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-02-10 20:55:00.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-02-10 20:55:00.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-02-11 19:39:12.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-02-11 19:39:11.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString tyUUvfyPitjlASZkU waemoe@eoogms.com vdcanewAFdpnE acsyiejmqx USA 75627 UoGazq <a href="http://zcmmvlzmsaxt.com/">zcmmvlzmsaxt</a>, [url=http://yfiryzbeeaun.com/]yfiryzbeeaun[/url], [link=http://lsuwawlepsuy.com/]lsuwawlepsuy[/link], http://atgjmmhxoawe.com/ waemoe@eoogms.com waemoe@eoogms.com acsyiejmqx
### ERROR LOG The Logging Results: ---------------------- 2010-02-11 18:39:12.000 Logging started. ---------------------- 2010-02-11 18:39:12.000 BioCASe protocol used. ---------------------- 2010-02-11 18:39:12.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-02-11 18:39:12.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-02-11 18:39:12.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-02-11 18:39:12.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-02-11 18:39:12.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-02-11 19:39:11.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n tyUUvfyPitjlASZkU\n waemoe@eoogms.com\n vdcanewAFdpnE\n acsyiejmqx\n USA\n 75627\n UoGazq <a href="http://zcmmvlzmsaxt.com/">zcmmvlzmsaxt</a>, [url=http://yfiryzbeeaun.com/]yfiryzbeeaun[/url], [link=http://lsuwawlepsuy.com/]lsuwawlepsuy[/link], http://atgjmmhxoawe.com/\n waemoe@eoogms.com\n waemoe@eoogms.com\n acsyiejmqx\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-02-11 19:39:11.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n tyUUvfyPitjlASZkU\n waemoe@eoogms.com\n vdcanewAFdpnE\n acsyiejmqx\n USA\n 75627\n UoGazq <a href="http://zcmmvlzmsaxt.com/">zcmmvlzmsaxt</a>, [url=http://yfiryzbeeaun.com/]yfiryzbeeaun[/url], [link=http://lsuwawlepsuy.com/]lsuwawlepsuy[/link], http://atgjmmhxoawe.com/\n waemoe@eoogms.com\n waemoe@eoogms.com\n acsyiejmqx\n\n\n\n \n
'} ---------------------- 2010-02-11 18:39:12.000 Found online debuglevel setting: 1 ---------------------- 2010-02-11 18:39:12.000 Setting debuglevel from 0 to 1 ---------------------- 2010-02-11 18:39:12.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-02-11 18:39:12.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-02-11 18:39:12.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-02-11 18:39:12.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-02-11 18:39:13.000 Pickled file is of latest revision. ---------------------- 2010-02-11 18:39:13.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-02-11 18:39:13.000 Original filter string parsed:
2.4.2 2010-02-11 19:39:11.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString tyUUvfyPitjlASZkU waemoe@eoogms.com vdcanewAFdpnE acsyiejmqx USA 75627 UoGazq <a href="http://zcmmvlzmsaxt.com/">zcmmvlzmsaxt</a>, [url=http://yfiryzbeeaun.com/]yfiryzbeeaun[/url], [link=http://lsuwawlepsuy.com/]lsuwawlepsuy[/link], http://atgjmmhxoawe.com/ waemoe@eoogms.com waemoe@eoogms.com acsyiejmqx
---------------------- 2010-02-11 18:39:13.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE tyUUvfyPitjlASZkU ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = waemoe@eoogms.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE vdcanewAFdpnE ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE acsyiejmqx ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 75627 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE UoGazq zcmmvlzmsaxt, [url=http://yfiryzbeeaun.com/]yfiryzbeeaun[/url], [link=http://lsuwawlepsuy.com/]lsuwawlepsuy[/link], http://atgjmmhxoawe.com/ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = waemoe@eoogms.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = waemoe@eoogms.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE acsyiejmqx )) ---------------------- 2010-02-11 18:39:13.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE tyUUvfyPitjlASZkU ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = waemoe@eoogms.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE vdcanewAFdpnE ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE acsyiejmqx ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 75627 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE UoGazq zcmmvlzmsaxt, [url=http://yfiryzbeeaun.com/]yfiryzbeeaun[/url], [link=http://lsuwawlepsuy.com/]lsuwawlepsuy[/link], http://atgjmmhxoawe.com/ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = waemoe@eoogms.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = waemoe@eoogms.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE acsyiejmqx )) ---------------------- 2010-02-11 18:39:13.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE tyUUvfyPitjlASZkU ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = waemoe@eoogms.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE vdcanewAFdpnE ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE acsyiejmqx ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 75627 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE UoGazq zcmmvlzmsaxt, [url=http://yfiryzbeeaun.com/]yfiryzbeeaun[/url], [link=http://lsuwawlepsuy.com/]lsuwawlepsuy[/link], http://atgjmmhxoawe.com/ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = waemoe@eoogms.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = waemoe@eoogms.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE acsyiejmqx )) ---------------------- 2010-02-11 18:39:13.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE tyUUvfyPitjlASZkU ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = waemoe@eoogms.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE vdcanewAFdpnE ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE acsyiejmqx ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 75627 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE UoGazq zcmmvlzmsaxt, [url=http://yfiryzbeeaun.com/]yfiryzbeeaun[/url], [link=http://lsuwawlepsuy.com/]lsuwawlepsuy[/link], http://atgjmmhxoawe.com/ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = waemoe@eoogms.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = waemoe@eoogms.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE acsyiejmqx )) ---------------------- 2010-02-11 18:39:13.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-02-11 18:39:13.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'tyUUvfyPitjlASZkU' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'waemoe@eoogms.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'vdcanewAFdpnE' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'acsyiejmqx' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '75627' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'UoGazq zcmmvlzmsaxt, [url=http://yfiryzbeeaun.com/]yfiryzbeeaun[/url], [link=http://lsuwawlepsuy.com/]lsuwawlepsuy[/link], http://atgjmmhxoawe.com/' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'waemoe@eoogms.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'waemoe@eoogms.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'acsyiejmqx' ))' ---------------------- 2010-02-11 18:39:13.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "waemoe@eoogms.com" ---------------------- 2010-02-11 18:39:13.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-02-12 01:44:45.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-02-12 01:00:11.38 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-02-12 00:44:45.000 Logging started. ---------------------- 2010-02-12 00:44:45.000 BioCASe protocol used. ---------------------- 2010-02-12 00:44:45.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-02-12 00:44:45.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-02-12 00:44:45.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-02-12 00:44:46.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-02-12 00:44:46.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-02-12 01:00:11.38\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-02-12 01:00:11.38\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-02-12 01:00:11.38\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-02-12 00:44:46.000 Found online debuglevel setting: 1 ---------------------- 2010-02-12 00:44:46.000 Setting debuglevel from 0 to 1 ---------------------- 2010-02-12 00:44:46.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-02-12 00:44:46.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-02-12 00:44:46.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-02-12 00:44:46.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-02-12 00:44:46.000 Pickled file is of latest revision. ---------------------- 2010-02-12 00:44:46.000 Original filter string parsed:
0.1 2010-02-12 01:00:11.38 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-02-12 00:44:46.000 Filter created: None ---------------------- 2010-02-12 00:44:46.000 Compressed filter used: None ---------------------- 2010-02-12 00:44:46.000 Counting total matched records with filter=None ---------------------- 2010-02-12 00:44:46.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-02-12 00:44:46.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-02-12 02:08:37.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-02-12 02:08:37.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString UrgqmpoOrzAOtX JUpSIWVNGeGeGE IlGsFITQcSHb Byron L. Funkhouser HWFkMwJTuwQF DrYquGxJXPQTWQgDotO tgSmdTgLeAcNPWzxll oSFkHnPEytMH SxoDPBlRYoYUKGu Byron L. Funkhouser
### ERROR LOG The Logging Results: ---------------------- 2010-02-12 01:08:37.000 Logging started. ---------------------- 2010-02-12 01:08:37.000 BioCASe protocol used. ---------------------- 2010-02-12 01:08:37.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-02-12 01:08:38.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-02-12 01:08:38.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-02-12 01:08:38.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-02-12 01:08:38.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-02-12 02:08:37.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n UrgqmpoOrzAOtX\n JUpSIWVNGeGeGE\n IlGsFITQcSHb\n Byron L. Funkhouser\n HWFkMwJTuwQF\n DrYquGxJXPQTWQgDotO\n tgSmdTgLeAcNPWzxll\n oSFkHnPEytMH\n SxoDPBlRYoYUKGu\n Byron L. Funkhouser\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-02-12 02:08:37.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n UrgqmpoOrzAOtX\n JUpSIWVNGeGeGE\n IlGsFITQcSHb\n Byron L. Funkhouser\n HWFkMwJTuwQF\n DrYquGxJXPQTWQgDotO\n tgSmdTgLeAcNPWzxll\n oSFkHnPEytMH\n SxoDPBlRYoYUKGu\n Byron L. Funkhouser\n\n\n\n \n
'} ---------------------- 2010-02-12 01:08:38.000 Found online debuglevel setting: 1 ---------------------- 2010-02-12 01:08:38.000 Setting debuglevel from 0 to 1 ---------------------- 2010-02-12 01:08:38.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-02-12 01:08:38.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-02-12 01:08:38.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-02-12 01:08:38.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-02-12 01:08:38.000 Pickled file is of latest revision. ---------------------- 2010-02-12 01:08:38.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-02-12 01:08:38.000 Original filter string parsed:
2.4.2 2010-02-12 02:08:37.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString UrgqmpoOrzAOtX JUpSIWVNGeGeGE IlGsFITQcSHb Byron L. Funkhouser HWFkMwJTuwQF DrYquGxJXPQTWQgDotO tgSmdTgLeAcNPWzxll oSFkHnPEytMH SxoDPBlRYoYUKGu Byron L. Funkhouser
---------------------- 2010-02-12 01:08:38.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE UrgqmpoOrzAOtX ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = JUpSIWVNGeGeGE ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE IlGsFITQcSHb ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Byron L. Funkhouser ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE HWFkMwJTuwQF ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE DrYquGxJXPQTWQgDotO ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE tgSmdTgLeAcNPWzxll ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = oSFkHnPEytMH ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = SxoDPBlRYoYUKGu ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Byron L. Funkhouser )) ---------------------- 2010-02-12 01:08:38.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE UrgqmpoOrzAOtX ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = JUpSIWVNGeGeGE ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE IlGsFITQcSHb ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Byron L. Funkhouser ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE HWFkMwJTuwQF ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE DrYquGxJXPQTWQgDotO ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE tgSmdTgLeAcNPWzxll ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = oSFkHnPEytMH ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = SxoDPBlRYoYUKGu ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Byron L. Funkhouser )) ---------------------- 2010-02-12 01:08:38.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE UrgqmpoOrzAOtX ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = JUpSIWVNGeGeGE ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE IlGsFITQcSHb ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Byron L. Funkhouser ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE HWFkMwJTuwQF ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE DrYquGxJXPQTWQgDotO ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE tgSmdTgLeAcNPWzxll ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = oSFkHnPEytMH ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = SxoDPBlRYoYUKGu ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Byron L. Funkhouser )) ---------------------- 2010-02-12 01:08:38.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE UrgqmpoOrzAOtX ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = JUpSIWVNGeGeGE ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE IlGsFITQcSHb ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Byron L. Funkhouser ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE HWFkMwJTuwQF ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE DrYquGxJXPQTWQgDotO ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE tgSmdTgLeAcNPWzxll ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = oSFkHnPEytMH ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = SxoDPBlRYoYUKGu ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Byron L. Funkhouser )) ---------------------- 2010-02-12 01:08:38.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-02-12 01:08:38.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'UrgqmpoOrzAOtX' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'JUpSIWVNGeGeGE' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'IlGsFITQcSHb' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Byron L. Funkhouser' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'HWFkMwJTuwQF' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'DrYquGxJXPQTWQgDotO' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'tgSmdTgLeAcNPWzxll' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'oSFkHnPEytMH' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'SxoDPBlRYoYUKGu' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Byron L. Funkhouser' ))' ---------------------- 2010-02-12 01:08:38.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "JUpSIWVNGeGeGE" ---------------------- 2010-02-12 01:08:38.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-02-12 02:08:41.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-02-12 02:08:41.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString UrgqmpoOrzAOtX JUpSIWVNGeGeGE IlGsFITQcSHb Terrence M. Jones HWFkMwJTuwQF DrYquGxJXPQTWQgDotO tgSmdTgLeAcNPWzxll oSFkHnPEytMH SxoDPBlRYoYUKGu Terrence M. Jones
### ERROR LOG The Logging Results: ---------------------- 2010-02-12 01:08:41.000 Logging started. ---------------------- 2010-02-12 01:08:41.000 BioCASe protocol used. ---------------------- 2010-02-12 01:08:41.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-02-12 01:08:41.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-02-12 01:08:41.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-02-12 01:08:41.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-02-12 01:08:41.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-02-12 02:08:41.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n UrgqmpoOrzAOtX\n JUpSIWVNGeGeGE\n IlGsFITQcSHb\n Terrence M. Jones\n HWFkMwJTuwQF\n DrYquGxJXPQTWQgDotO\n tgSmdTgLeAcNPWzxll\n oSFkHnPEytMH\n SxoDPBlRYoYUKGu\n Terrence M. Jones\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-02-12 02:08:41.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n UrgqmpoOrzAOtX\n JUpSIWVNGeGeGE\n IlGsFITQcSHb\n Terrence M. Jones\n HWFkMwJTuwQF\n DrYquGxJXPQTWQgDotO\n tgSmdTgLeAcNPWzxll\n oSFkHnPEytMH\n SxoDPBlRYoYUKGu\n Terrence M. Jones\n\n\n\n \n
'} ---------------------- 2010-02-12 01:08:41.000 Found online debuglevel setting: 1 ---------------------- 2010-02-12 01:08:41.000 Setting debuglevel from 0 to 1 ---------------------- 2010-02-12 01:08:41.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-02-12 01:08:42.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-02-12 01:08:42.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-02-12 01:08:42.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-02-12 01:08:42.000 Pickled file is of latest revision. ---------------------- 2010-02-12 01:08:42.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-02-12 01:08:42.000 Original filter string parsed:
2.4.2 2010-02-12 02:08:41.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString UrgqmpoOrzAOtX JUpSIWVNGeGeGE IlGsFITQcSHb Terrence M. Jones HWFkMwJTuwQF DrYquGxJXPQTWQgDotO tgSmdTgLeAcNPWzxll oSFkHnPEytMH SxoDPBlRYoYUKGu Terrence M. Jones
---------------------- 2010-02-12 01:08:42.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE UrgqmpoOrzAOtX ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = JUpSIWVNGeGeGE ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE IlGsFITQcSHb ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Terrence M. Jones ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE HWFkMwJTuwQF ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE DrYquGxJXPQTWQgDotO ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE tgSmdTgLeAcNPWzxll ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = oSFkHnPEytMH ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = SxoDPBlRYoYUKGu ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Terrence M. Jones )) ---------------------- 2010-02-12 01:08:42.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE UrgqmpoOrzAOtX ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = JUpSIWVNGeGeGE ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE IlGsFITQcSHb ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Terrence M. Jones ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE HWFkMwJTuwQF ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE DrYquGxJXPQTWQgDotO ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE tgSmdTgLeAcNPWzxll ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = oSFkHnPEytMH ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = SxoDPBlRYoYUKGu ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Terrence M. Jones )) ---------------------- 2010-02-12 01:08:42.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE UrgqmpoOrzAOtX ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = JUpSIWVNGeGeGE ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE IlGsFITQcSHb ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Terrence M. Jones ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE HWFkMwJTuwQF ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE DrYquGxJXPQTWQgDotO ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE tgSmdTgLeAcNPWzxll ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = oSFkHnPEytMH ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = SxoDPBlRYoYUKGu ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Terrence M. Jones )) ---------------------- 2010-02-12 01:08:42.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE UrgqmpoOrzAOtX ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = JUpSIWVNGeGeGE ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE IlGsFITQcSHb ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Terrence M. Jones ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE HWFkMwJTuwQF ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE DrYquGxJXPQTWQgDotO ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE tgSmdTgLeAcNPWzxll ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = oSFkHnPEytMH ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = SxoDPBlRYoYUKGu ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Terrence M. Jones )) ---------------------- 2010-02-12 01:08:42.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-02-12 01:08:42.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'UrgqmpoOrzAOtX' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'JUpSIWVNGeGeGE' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'IlGsFITQcSHb' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Terrence M. Jones' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'HWFkMwJTuwQF' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'DrYquGxJXPQTWQgDotO' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'tgSmdTgLeAcNPWzxll' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'oSFkHnPEytMH' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'SxoDPBlRYoYUKGu' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Terrence M. Jones' ))' ---------------------- 2010-02-12 01:08:42.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "JUpSIWVNGeGeGE" ---------------------- 2010-02-12 01:08:42.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-02-12 02:08:45.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-02-12 02:08:45.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString UrgqmpoOrzAOtX JUpSIWVNGeGeGE IlGsFITQcSHb Robert J. Schwandt HWFkMwJTuwQF DrYquGxJXPQTWQgDotO tgSmdTgLeAcNPWzxll oSFkHnPEytMH SxoDPBlRYoYUKGu Robert J. Schwandt
### ERROR LOG The Logging Results: ---------------------- 2010-02-12 01:08:45.000 Logging started. ---------------------- 2010-02-12 01:08:45.000 BioCASe protocol used. ---------------------- 2010-02-12 01:08:45.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-02-12 01:08:45.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-02-12 01:08:45.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-02-12 01:08:45.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-02-12 01:08:45.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-02-12 02:08:45.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n UrgqmpoOrzAOtX\n JUpSIWVNGeGeGE\n IlGsFITQcSHb\n Robert J. Schwandt\n HWFkMwJTuwQF\n DrYquGxJXPQTWQgDotO\n tgSmdTgLeAcNPWzxll\n oSFkHnPEytMH\n SxoDPBlRYoYUKGu\n Robert J. Schwandt\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-02-12 02:08:45.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n UrgqmpoOrzAOtX\n JUpSIWVNGeGeGE\n IlGsFITQcSHb\n Robert J. Schwandt\n HWFkMwJTuwQF\n DrYquGxJXPQTWQgDotO\n tgSmdTgLeAcNPWzxll\n oSFkHnPEytMH\n SxoDPBlRYoYUKGu\n Robert J. Schwandt\n\n\n\n \n
'} ---------------------- 2010-02-12 01:08:45.000 Found online debuglevel setting: 1 ---------------------- 2010-02-12 01:08:45.000 Setting debuglevel from 0 to 1 ---------------------- 2010-02-12 01:08:46.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-02-12 01:08:46.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-02-12 01:08:46.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-02-12 01:08:46.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-02-12 01:08:46.000 Pickled file is of latest revision. ---------------------- 2010-02-12 01:08:46.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-02-12 01:08:46.000 Original filter string parsed:
2.4.2 2010-02-12 02:08:45.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString UrgqmpoOrzAOtX JUpSIWVNGeGeGE IlGsFITQcSHb Robert J. Schwandt HWFkMwJTuwQF DrYquGxJXPQTWQgDotO tgSmdTgLeAcNPWzxll oSFkHnPEytMH SxoDPBlRYoYUKGu Robert J. Schwandt
---------------------- 2010-02-12 01:08:46.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE UrgqmpoOrzAOtX ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = JUpSIWVNGeGeGE ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE IlGsFITQcSHb ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Robert J. Schwandt ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE HWFkMwJTuwQF ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE DrYquGxJXPQTWQgDotO ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE tgSmdTgLeAcNPWzxll ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = oSFkHnPEytMH ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = SxoDPBlRYoYUKGu ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Robert J. Schwandt )) ---------------------- 2010-02-12 01:08:46.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE UrgqmpoOrzAOtX ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = JUpSIWVNGeGeGE ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE IlGsFITQcSHb ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Robert J. Schwandt ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE HWFkMwJTuwQF ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE DrYquGxJXPQTWQgDotO ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE tgSmdTgLeAcNPWzxll ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = oSFkHnPEytMH ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = SxoDPBlRYoYUKGu ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Robert J. Schwandt )) ---------------------- 2010-02-12 01:08:46.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE UrgqmpoOrzAOtX ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = JUpSIWVNGeGeGE ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE IlGsFITQcSHb ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Robert J. Schwandt ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE HWFkMwJTuwQF ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE DrYquGxJXPQTWQgDotO ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE tgSmdTgLeAcNPWzxll ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = oSFkHnPEytMH ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = SxoDPBlRYoYUKGu ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Robert J. Schwandt )) ---------------------- 2010-02-12 01:08:46.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE UrgqmpoOrzAOtX ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = JUpSIWVNGeGeGE ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE IlGsFITQcSHb ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Robert J. Schwandt ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE HWFkMwJTuwQF ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE DrYquGxJXPQTWQgDotO ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE tgSmdTgLeAcNPWzxll ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = oSFkHnPEytMH ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = SxoDPBlRYoYUKGu ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Robert J. Schwandt )) ---------------------- 2010-02-12 01:08:46.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-02-12 01:08:46.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'UrgqmpoOrzAOtX' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'JUpSIWVNGeGeGE' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'IlGsFITQcSHb' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Robert J. Schwandt' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'HWFkMwJTuwQF' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'DrYquGxJXPQTWQgDotO' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'tgSmdTgLeAcNPWzxll' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'oSFkHnPEytMH' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'SxoDPBlRYoYUKGu' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Robert J. Schwandt' ))' ---------------------- 2010-02-12 01:08:46.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "JUpSIWVNGeGeGE" ---------------------- 2010-02-12 01:08:46.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-02-12 02:08:49.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-02-12 02:08:48.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString UrgqmpoOrzAOtX JUpSIWVNGeGeGE IlGsFITQcSHb Ryan L. Ehmann HWFkMwJTuwQF DrYquGxJXPQTWQgDotO tgSmdTgLeAcNPWzxll oSFkHnPEytMH SxoDPBlRYoYUKGu Ryan L. Ehmann
### ERROR LOG The Logging Results: ---------------------- 2010-02-12 01:08:49.000 Logging started. ---------------------- 2010-02-12 01:08:49.000 BioCASe protocol used. ---------------------- 2010-02-12 01:08:49.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-02-12 01:08:49.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-02-12 01:08:49.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-02-12 01:08:49.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-02-12 01:08:49.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-02-12 02:08:48.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n UrgqmpoOrzAOtX\n JUpSIWVNGeGeGE\n IlGsFITQcSHb\n Ryan L. Ehmann\n HWFkMwJTuwQF\n DrYquGxJXPQTWQgDotO\n tgSmdTgLeAcNPWzxll\n oSFkHnPEytMH\n SxoDPBlRYoYUKGu\n Ryan L. Ehmann\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-02-12 02:08:48.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n UrgqmpoOrzAOtX\n JUpSIWVNGeGeGE\n IlGsFITQcSHb\n Ryan L. Ehmann\n HWFkMwJTuwQF\n DrYquGxJXPQTWQgDotO\n tgSmdTgLeAcNPWzxll\n oSFkHnPEytMH\n SxoDPBlRYoYUKGu\n Ryan L. Ehmann\n\n\n\n \n
'} ---------------------- 2010-02-12 01:08:49.000 Found online debuglevel setting: 1 ---------------------- 2010-02-12 01:08:49.000 Setting debuglevel from 0 to 1 ---------------------- 2010-02-12 01:08:49.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-02-12 01:08:49.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-02-12 01:08:49.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-02-12 01:08:49.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-02-12 01:08:50.000 Pickled file is of latest revision. ---------------------- 2010-02-12 01:08:50.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-02-12 01:08:50.000 Original filter string parsed:
2.4.2 2010-02-12 02:08:48.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString UrgqmpoOrzAOtX JUpSIWVNGeGeGE IlGsFITQcSHb Ryan L. Ehmann HWFkMwJTuwQF DrYquGxJXPQTWQgDotO tgSmdTgLeAcNPWzxll oSFkHnPEytMH SxoDPBlRYoYUKGu Ryan L. Ehmann
---------------------- 2010-02-12 01:08:50.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE UrgqmpoOrzAOtX ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = JUpSIWVNGeGeGE ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE IlGsFITQcSHb ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Ryan L. Ehmann ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE HWFkMwJTuwQF ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE DrYquGxJXPQTWQgDotO ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE tgSmdTgLeAcNPWzxll ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = oSFkHnPEytMH ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = SxoDPBlRYoYUKGu ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Ryan L. Ehmann )) ---------------------- 2010-02-12 01:08:50.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE UrgqmpoOrzAOtX ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = JUpSIWVNGeGeGE ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE IlGsFITQcSHb ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Ryan L. Ehmann ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE HWFkMwJTuwQF ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE DrYquGxJXPQTWQgDotO ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE tgSmdTgLeAcNPWzxll ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = oSFkHnPEytMH ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = SxoDPBlRYoYUKGu ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Ryan L. Ehmann )) ---------------------- 2010-02-12 01:08:50.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE UrgqmpoOrzAOtX ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = JUpSIWVNGeGeGE ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE IlGsFITQcSHb ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Ryan L. Ehmann ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE HWFkMwJTuwQF ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE DrYquGxJXPQTWQgDotO ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE tgSmdTgLeAcNPWzxll ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = oSFkHnPEytMH ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = SxoDPBlRYoYUKGu ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Ryan L. Ehmann )) ---------------------- 2010-02-12 01:08:50.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE UrgqmpoOrzAOtX ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = JUpSIWVNGeGeGE ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE IlGsFITQcSHb ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Ryan L. Ehmann ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE HWFkMwJTuwQF ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE DrYquGxJXPQTWQgDotO ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE tgSmdTgLeAcNPWzxll ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = oSFkHnPEytMH ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = SxoDPBlRYoYUKGu ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Ryan L. Ehmann )) ---------------------- 2010-02-12 01:08:50.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-02-12 01:08:50.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'UrgqmpoOrzAOtX' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'JUpSIWVNGeGeGE' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'IlGsFITQcSHb' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Ryan L. Ehmann' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'HWFkMwJTuwQF' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'DrYquGxJXPQTWQgDotO' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'tgSmdTgLeAcNPWzxll' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'oSFkHnPEytMH' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'SxoDPBlRYoYUKGu' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Ryan L. Ehmann' ))' ---------------------- 2010-02-12 01:08:50.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "JUpSIWVNGeGeGE" ---------------------- 2010-02-12 01:08:50.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-02-12 14:07:27.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-02-12 14:07:26.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString kAzvWaWhzzM URWvbwMWhQUnvAdKmg oYwLbzagD Tony D. Smith PelZInuhVnXLTHUiDus FJthRJIrXnTpsHhcxH jLTfvFxer SVWtoMpXSqj wAWnSQQpRsKhFQUeVCG Tony D. Smith
### ERROR LOG The Logging Results: ---------------------- 2010-02-12 13:07:27.000 Logging started. ---------------------- 2010-02-12 13:07:27.000 BioCASe protocol used. ---------------------- 2010-02-12 13:07:27.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-02-12 13:07:27.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-02-12 13:07:27.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-02-12 13:07:27.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-02-12 13:07:27.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-02-12 14:07:26.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n kAzvWaWhzzM\n URWvbwMWhQUnvAdKmg\n oYwLbzagD\n Tony D. Smith\n PelZInuhVnXLTHUiDus\n FJthRJIrXnTpsHhcxH\n jLTfvFxer\n SVWtoMpXSqj\n wAWnSQQpRsKhFQUeVCG\n Tony D. Smith\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-02-12 14:07:26.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n kAzvWaWhzzM\n URWvbwMWhQUnvAdKmg\n oYwLbzagD\n Tony D. Smith\n PelZInuhVnXLTHUiDus\n FJthRJIrXnTpsHhcxH\n jLTfvFxer\n SVWtoMpXSqj\n wAWnSQQpRsKhFQUeVCG\n Tony D. Smith\n\n\n\n \n
'} ---------------------- 2010-02-12 13:07:27.000 Found online debuglevel setting: 1 ---------------------- 2010-02-12 13:07:27.000 Setting debuglevel from 0 to 1 ---------------------- 2010-02-12 13:07:27.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-02-12 13:07:27.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-02-12 13:07:27.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-02-12 13:07:27.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-02-12 13:07:27.000 Pickled file is of latest revision. ---------------------- 2010-02-12 13:07:27.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-02-12 13:07:27.000 Original filter string parsed:
2.4.2 2010-02-12 14:07:26.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString kAzvWaWhzzM URWvbwMWhQUnvAdKmg oYwLbzagD Tony D. Smith PelZInuhVnXLTHUiDus FJthRJIrXnTpsHhcxH jLTfvFxer SVWtoMpXSqj wAWnSQQpRsKhFQUeVCG Tony D. Smith
---------------------- 2010-02-12 13:07:27.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE kAzvWaWhzzM ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = URWvbwMWhQUnvAdKmg ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE oYwLbzagD ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Tony D. Smith ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE PelZInuhVnXLTHUiDus ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE FJthRJIrXnTpsHhcxH ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE jLTfvFxer ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = SVWtoMpXSqj ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = wAWnSQQpRsKhFQUeVCG ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Tony D. Smith )) ---------------------- 2010-02-12 13:07:27.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE kAzvWaWhzzM ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = URWvbwMWhQUnvAdKmg ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE oYwLbzagD ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Tony D. Smith ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE PelZInuhVnXLTHUiDus ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE FJthRJIrXnTpsHhcxH ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE jLTfvFxer ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = SVWtoMpXSqj ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = wAWnSQQpRsKhFQUeVCG ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Tony D. Smith )) ---------------------- 2010-02-12 13:07:27.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE kAzvWaWhzzM ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = URWvbwMWhQUnvAdKmg ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE oYwLbzagD ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Tony D. Smith ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE PelZInuhVnXLTHUiDus ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE FJthRJIrXnTpsHhcxH ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE jLTfvFxer ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = SVWtoMpXSqj ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = wAWnSQQpRsKhFQUeVCG ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Tony D. Smith )) ---------------------- 2010-02-12 13:07:27.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE kAzvWaWhzzM ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = URWvbwMWhQUnvAdKmg ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE oYwLbzagD ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Tony D. Smith ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE PelZInuhVnXLTHUiDus ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE FJthRJIrXnTpsHhcxH ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE jLTfvFxer ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = SVWtoMpXSqj ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = wAWnSQQpRsKhFQUeVCG ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Tony D. Smith )) ---------------------- 2010-02-12 13:07:27.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-02-12 13:07:27.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'kAzvWaWhzzM' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'URWvbwMWhQUnvAdKmg' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'oYwLbzagD' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Tony D. Smith' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'PelZInuhVnXLTHUiDus' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'FJthRJIrXnTpsHhcxH' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'jLTfvFxer' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'SVWtoMpXSqj' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'wAWnSQQpRsKhFQUeVCG' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Tony D. Smith' ))' ---------------------- 2010-02-12 13:07:28.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "URWvbwMWhQUnvAdKmg" ---------------------- 2010-02-12 13:07:28.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-02-12 22:19:24.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-02-12 22:19:23.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString lcsUNmPudy ggguphQKvlugLJSo YJRGWmeODyeSioOEg Duane E. Carter nbjnJOZOxgvDFi HrguagOtJuIfrqUxHUb qZYNxlVEjHueYm wbIodNEARQKeODAacUm IsLcicESDRyJUafT Duane E. Carter
### ERROR LOG The Logging Results: ---------------------- 2010-02-12 21:19:24.000 Logging started. ---------------------- 2010-02-12 21:19:24.000 BioCASe protocol used. ---------------------- 2010-02-12 21:19:24.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-02-12 21:19:24.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-02-12 21:19:24.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-02-12 21:19:24.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-02-12 21:19:24.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-02-12 22:19:23.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n lcsUNmPudy\n ggguphQKvlugLJSo\n YJRGWmeODyeSioOEg\n Duane E. Carter\n nbjnJOZOxgvDFi\n HrguagOtJuIfrqUxHUb\n qZYNxlVEjHueYm\n wbIodNEARQKeODAacUm\n IsLcicESDRyJUafT\n Duane E. Carter\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-02-12 22:19:23.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n lcsUNmPudy\n ggguphQKvlugLJSo\n YJRGWmeODyeSioOEg\n Duane E. Carter\n nbjnJOZOxgvDFi\n HrguagOtJuIfrqUxHUb\n qZYNxlVEjHueYm\n wbIodNEARQKeODAacUm\n IsLcicESDRyJUafT\n Duane E. Carter\n\n\n\n \n
'} ---------------------- 2010-02-12 21:19:24.000 Found online debuglevel setting: 1 ---------------------- 2010-02-12 21:19:24.000 Setting debuglevel from 0 to 1 ---------------------- 2010-02-12 21:19:24.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-02-12 21:19:24.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-02-12 21:19:24.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-02-12 21:19:24.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-02-12 21:19:24.000 Pickled file is of latest revision. ---------------------- 2010-02-12 21:19:24.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-02-12 21:19:24.000 Original filter string parsed:
2.4.2 2010-02-12 22:19:23.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString lcsUNmPudy ggguphQKvlugLJSo YJRGWmeODyeSioOEg Duane E. Carter nbjnJOZOxgvDFi HrguagOtJuIfrqUxHUb qZYNxlVEjHueYm wbIodNEARQKeODAacUm IsLcicESDRyJUafT Duane E. Carter
---------------------- 2010-02-12 21:19:24.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE lcsUNmPudy ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ggguphQKvlugLJSo ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE YJRGWmeODyeSioOEg ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Duane E. Carter ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE nbjnJOZOxgvDFi ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE HrguagOtJuIfrqUxHUb ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE qZYNxlVEjHueYm ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = wbIodNEARQKeODAacUm ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = IsLcicESDRyJUafT ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Duane E. Carter )) ---------------------- 2010-02-12 21:19:24.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE lcsUNmPudy ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ggguphQKvlugLJSo ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE YJRGWmeODyeSioOEg ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Duane E. Carter ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE nbjnJOZOxgvDFi ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE HrguagOtJuIfrqUxHUb ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE qZYNxlVEjHueYm ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = wbIodNEARQKeODAacUm ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = IsLcicESDRyJUafT ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Duane E. Carter )) ---------------------- 2010-02-12 21:19:24.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE lcsUNmPudy ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ggguphQKvlugLJSo ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE YJRGWmeODyeSioOEg ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Duane E. Carter ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE nbjnJOZOxgvDFi ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE HrguagOtJuIfrqUxHUb ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE qZYNxlVEjHueYm ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = wbIodNEARQKeODAacUm ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = IsLcicESDRyJUafT ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Duane E. Carter )) ---------------------- 2010-02-12 21:19:24.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE lcsUNmPudy ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ggguphQKvlugLJSo ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE YJRGWmeODyeSioOEg ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Duane E. Carter ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE nbjnJOZOxgvDFi ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE HrguagOtJuIfrqUxHUb ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE qZYNxlVEjHueYm ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = wbIodNEARQKeODAacUm ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = IsLcicESDRyJUafT ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Duane E. Carter )) ---------------------- 2010-02-12 21:19:24.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-02-12 21:19:24.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'lcsUNmPudy' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'ggguphQKvlugLJSo' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'YJRGWmeODyeSioOEg' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Duane E. Carter' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'nbjnJOZOxgvDFi' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'HrguagOtJuIfrqUxHUb' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'qZYNxlVEjHueYm' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'wbIodNEARQKeODAacUm' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'IsLcicESDRyJUafT' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Duane E. Carter' ))' ---------------------- 2010-02-12 21:19:24.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "ggguphQKvlugLJSo" ---------------------- 2010-02-12 21:19:24.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-02-12 22:27:13.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-02-12 22:27:12.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString EzNZLsXV ngprzj@cghrcm.com hPrWBKcjy sgqrhnpddp USA 23992 Rz8e8 ngprzj@cghrcm.com ngprzj@cghrcm.com yisWXSBaDRkgpisDkl
### ERROR LOG The Logging Results: ---------------------- 2010-02-12 21:27:13.000 Logging started. ---------------------- 2010-02-12 21:27:13.000 BioCASe protocol used. ---------------------- 2010-02-12 21:27:13.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-02-12 21:27:13.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-02-12 21:27:13.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-02-12 21:27:13.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-02-12 21:27:13.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-02-12 22:27:12.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n EzNZLsXV\n ngprzj@cghrcm.com\n hPrWBKcjy\n sgqrhnpddp\n USA\n 23992\n Rz8e8\n ngprzj@cghrcm.com\n ngprzj@cghrcm.com\n yisWXSBaDRkgpisDkl\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-02-12 22:27:12.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n EzNZLsXV\n ngprzj@cghrcm.com\n hPrWBKcjy\n sgqrhnpddp\n USA\n 23992\n Rz8e8\n ngprzj@cghrcm.com\n ngprzj@cghrcm.com\n yisWXSBaDRkgpisDkl\n\n\n\n \n
'} ---------------------- 2010-02-12 21:27:13.000 Found online debuglevel setting: 1 ---------------------- 2010-02-12 21:27:13.000 Setting debuglevel from 0 to 1 ---------------------- 2010-02-12 21:27:13.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-02-12 21:27:13.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-02-12 21:27:13.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-02-12 21:27:13.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-02-12 21:27:13.000 Pickled file is of latest revision. ---------------------- 2010-02-12 21:27:13.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-02-12 21:27:13.000 Original filter string parsed:
2.4.2 2010-02-12 22:27:12.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString EzNZLsXV ngprzj@cghrcm.com hPrWBKcjy sgqrhnpddp USA 23992 Rz8e8 ngprzj@cghrcm.com ngprzj@cghrcm.com yisWXSBaDRkgpisDkl
---------------------- 2010-02-12 21:27:13.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE EzNZLsXV ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ngprzj@cghrcm.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE hPrWBKcjy ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE sgqrhnpddp ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 23992 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE Rz8e8 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ngprzj@cghrcm.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ngprzj@cghrcm.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE yisWXSBaDRkgpisDkl )) ---------------------- 2010-02-12 21:27:13.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE EzNZLsXV ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ngprzj@cghrcm.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE hPrWBKcjy ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE sgqrhnpddp ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 23992 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE Rz8e8 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ngprzj@cghrcm.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ngprzj@cghrcm.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE yisWXSBaDRkgpisDkl )) ---------------------- 2010-02-12 21:27:13.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE EzNZLsXV ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ngprzj@cghrcm.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE hPrWBKcjy ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE sgqrhnpddp ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 23992 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE Rz8e8 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ngprzj@cghrcm.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ngprzj@cghrcm.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE yisWXSBaDRkgpisDkl )) ---------------------- 2010-02-12 21:27:13.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE EzNZLsXV ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ngprzj@cghrcm.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE hPrWBKcjy ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE sgqrhnpddp ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 23992 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE Rz8e8 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ngprzj@cghrcm.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ngprzj@cghrcm.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE yisWXSBaDRkgpisDkl )) ---------------------- 2010-02-12 21:27:13.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-02-12 21:27:13.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'EzNZLsXV' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'ngprzj@cghrcm.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'hPrWBKcjy' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'sgqrhnpddp' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '23992' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'Rz8e8' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'ngprzj@cghrcm.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'ngprzj@cghrcm.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'yisWXSBaDRkgpisDkl' ))' ---------------------- 2010-02-12 21:27:13.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "ngprzj@cghrcm.com" ---------------------- 2010-02-12 21:27:13.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-02-13 06:56:12.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-02-13 06:56:12.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString VJlfAZSab ESaDfsbHtgJG qEHJyTXOYk Murray M. Pfeifer sfEQZcnGUm JQCvvxZwJHSOPiXs wuIcXRYdh ajVvUCkmYDAKR SNBYBonjhCLWcxuqT Murray M. Pfeifer
### ERROR LOG The Logging Results: ---------------------- 2010-02-13 05:56:12.000 Logging started. ---------------------- 2010-02-13 05:56:12.000 BioCASe protocol used. ---------------------- 2010-02-13 05:56:12.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-02-13 05:56:12.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-02-13 05:56:12.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-02-13 05:56:12.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-02-13 05:56:12.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-02-13 06:56:12.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n VJlfAZSab\n ESaDfsbHtgJG\n qEHJyTXOYk\n Murray M. Pfeifer\n sfEQZcnGUm\n JQCvvxZwJHSOPiXs\n wuIcXRYdh\n ajVvUCkmYDAKR\n SNBYBonjhCLWcxuqT\n Murray M. Pfeifer\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-02-13 06:56:12.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n VJlfAZSab\n ESaDfsbHtgJG\n qEHJyTXOYk\n Murray M. Pfeifer\n sfEQZcnGUm\n JQCvvxZwJHSOPiXs\n wuIcXRYdh\n ajVvUCkmYDAKR\n SNBYBonjhCLWcxuqT\n Murray M. Pfeifer\n\n\n\n \n
'} ---------------------- 2010-02-13 05:56:12.000 Found online debuglevel setting: 1 ---------------------- 2010-02-13 05:56:12.000 Setting debuglevel from 0 to 1 ---------------------- 2010-02-13 05:56:12.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-02-13 05:56:13.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-02-13 05:56:13.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-02-13 05:56:13.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-02-13 05:56:13.000 Pickled file is of latest revision. ---------------------- 2010-02-13 05:56:13.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-02-13 05:56:13.000 Original filter string parsed:
2.4.2 2010-02-13 06:56:12.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString VJlfAZSab ESaDfsbHtgJG qEHJyTXOYk Murray M. Pfeifer sfEQZcnGUm JQCvvxZwJHSOPiXs wuIcXRYdh ajVvUCkmYDAKR SNBYBonjhCLWcxuqT Murray M. Pfeifer
---------------------- 2010-02-13 05:56:13.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE VJlfAZSab ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ESaDfsbHtgJG ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE qEHJyTXOYk ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Murray M. Pfeifer ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE sfEQZcnGUm ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE JQCvvxZwJHSOPiXs ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE wuIcXRYdh ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ajVvUCkmYDAKR ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = SNBYBonjhCLWcxuqT ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Murray M. Pfeifer )) ---------------------- 2010-02-13 05:56:13.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE VJlfAZSab ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ESaDfsbHtgJG ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE qEHJyTXOYk ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Murray M. Pfeifer ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE sfEQZcnGUm ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE JQCvvxZwJHSOPiXs ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE wuIcXRYdh ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ajVvUCkmYDAKR ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = SNBYBonjhCLWcxuqT ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Murray M. Pfeifer )) ---------------------- 2010-02-13 05:56:13.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE VJlfAZSab ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ESaDfsbHtgJG ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE qEHJyTXOYk ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Murray M. Pfeifer ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE sfEQZcnGUm ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE JQCvvxZwJHSOPiXs ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE wuIcXRYdh ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ajVvUCkmYDAKR ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = SNBYBonjhCLWcxuqT ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Murray M. Pfeifer )) ---------------------- 2010-02-13 05:56:13.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE VJlfAZSab ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ESaDfsbHtgJG ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE qEHJyTXOYk ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Murray M. Pfeifer ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE sfEQZcnGUm ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE JQCvvxZwJHSOPiXs ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE wuIcXRYdh ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ajVvUCkmYDAKR ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = SNBYBonjhCLWcxuqT ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Murray M. Pfeifer )) ---------------------- 2010-02-13 05:56:13.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-02-13 05:56:13.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'VJlfAZSab' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'ESaDfsbHtgJG' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'qEHJyTXOYk' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Murray M. Pfeifer' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'sfEQZcnGUm' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'JQCvvxZwJHSOPiXs' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'wuIcXRYdh' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'ajVvUCkmYDAKR' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'SNBYBonjhCLWcxuqT' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Murray M. Pfeifer' ))' ---------------------- 2010-02-13 05:56:13.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "ESaDfsbHtgJG" ---------------------- 2010-02-13 05:56:13.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-02-13 12:35:02.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-02-13 12:35:01.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString IBWetHnL ClOsYBnSNtR BntaJCCmDp Jerry M. Bowling nsDFFIdGe rBgWjWshXBmFggVHl tqLMENZBUvG AxStOknDiFZi mPMXFEhfAxqdo Jerry M. Bowling
### ERROR LOG The Logging Results: ---------------------- 2010-02-13 11:35:02.000 Logging started. ---------------------- 2010-02-13 11:35:02.000 BioCASe protocol used. ---------------------- 2010-02-13 11:35:02.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-02-13 11:35:02.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-02-13 11:35:02.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-02-13 11:35:02.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-02-13 11:35:02.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-02-13 12:35:01.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n IBWetHnL\n ClOsYBnSNtR\n BntaJCCmDp\n Jerry M. Bowling\n nsDFFIdGe\n rBgWjWshXBmFggVHl\n tqLMENZBUvG\n AxStOknDiFZi\n mPMXFEhfAxqdo\n Jerry M. Bowling\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-02-13 12:35:01.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n IBWetHnL\n ClOsYBnSNtR\n BntaJCCmDp\n Jerry M. Bowling\n nsDFFIdGe\n rBgWjWshXBmFggVHl\n tqLMENZBUvG\n AxStOknDiFZi\n mPMXFEhfAxqdo\n Jerry M. Bowling\n\n\n\n \n
'} ---------------------- 2010-02-13 11:35:02.000 Found online debuglevel setting: 1 ---------------------- 2010-02-13 11:35:02.000 Setting debuglevel from 0 to 1 ---------------------- 2010-02-13 11:35:02.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-02-13 11:35:02.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-02-13 11:35:02.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-02-13 11:35:02.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-02-13 11:35:02.000 Pickled file is of latest revision. ---------------------- 2010-02-13 11:35:02.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-02-13 11:35:02.000 Original filter string parsed:
2.4.2 2010-02-13 12:35:01.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString IBWetHnL ClOsYBnSNtR BntaJCCmDp Jerry M. Bowling nsDFFIdGe rBgWjWshXBmFggVHl tqLMENZBUvG AxStOknDiFZi mPMXFEhfAxqdo Jerry M. Bowling
---------------------- 2010-02-13 11:35:02.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE IBWetHnL ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ClOsYBnSNtR ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE BntaJCCmDp ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Jerry M. Bowling ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE nsDFFIdGe ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE rBgWjWshXBmFggVHl ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE tqLMENZBUvG ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = AxStOknDiFZi ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = mPMXFEhfAxqdo ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Jerry M. Bowling )) ---------------------- 2010-02-13 11:35:02.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE IBWetHnL ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ClOsYBnSNtR ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE BntaJCCmDp ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Jerry M. Bowling ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE nsDFFIdGe ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE rBgWjWshXBmFggVHl ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE tqLMENZBUvG ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = AxStOknDiFZi ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = mPMXFEhfAxqdo ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Jerry M. Bowling )) ---------------------- 2010-02-13 11:35:02.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE IBWetHnL ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ClOsYBnSNtR ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE BntaJCCmDp ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Jerry M. Bowling ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE nsDFFIdGe ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE rBgWjWshXBmFggVHl ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE tqLMENZBUvG ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = AxStOknDiFZi ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = mPMXFEhfAxqdo ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Jerry M. Bowling )) ---------------------- 2010-02-13 11:35:02.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE IBWetHnL ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ClOsYBnSNtR ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE BntaJCCmDp ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Jerry M. Bowling ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE nsDFFIdGe ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE rBgWjWshXBmFggVHl ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE tqLMENZBUvG ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = AxStOknDiFZi ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = mPMXFEhfAxqdo ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Jerry M. Bowling )) ---------------------- 2010-02-13 11:35:02.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-02-13 11:35:02.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'IBWetHnL' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'ClOsYBnSNtR' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'BntaJCCmDp' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Jerry M. Bowling' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'nsDFFIdGe' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'rBgWjWshXBmFggVHl' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'tqLMENZBUvG' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'AxStOknDiFZi' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'mPMXFEhfAxqdo' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Jerry M. Bowling' ))' ---------------------- 2010-02-13 11:35:02.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "ClOsYBnSNtR" ---------------------- 2010-02-13 11:35:03.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-02-13 12:35:06.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 <- to RMCA_Amphibians
2.4.2 2010-02-13 12:35:05.000 search
http://www.tdwg.org/schemas/abcd/2.06 http://www.tdwg.org/schemas/abcd/2.06 IBWetHnL ClOsYBnSNtR BntaJCCmDp Jerry M. Bowling nsDFFIdGe rBgWjWshXBmFggVHl tqLMENZBUvG AxStOknDiFZi mPMXFEhfAxqdo Jerry M. Bowling None False
### ERROR LOG The Logging Results: ---------------------- 2010-02-13 11:35:06.000 Logging started. ---------------------- 2010-02-13 11:35:06.000 BioCASe protocol used. ---------------------- 2010-02-13 11:35:06.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-02-13 11:35:06.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-02-13 11:35:06.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-02-13 11:35:06.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-02-13 11:35:06.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 2.4.2\n 2010-02-13 12:35:05.000\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n http://www.tdwg.org/schemas/abcd/2.06\n \n \n\n \n \n \n \n \n \n \n \n IBWetHnL\n ClOsYBnSNtR\n \n BntaJCCmDp\n \n Jerry M. Bowling\n \n nsDFFIdGe\n \n rBgWjWshXBmFggVHl\n \n tqLMENZBUvG\n \n AxStOknDiFZi\n \n mPMXFEhfAxqdo\n \n Jerry M. Bowling\n None\n\n \n False\n \n
\n ', 'request_string': '\n \n \n
\n 2.4.2\n 2010-02-13 12:35:05.000\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n http://www.tdwg.org/schemas/abcd/2.06\n \n \n\n \n \n \n \n \n \n \n \n IBWetHnL\n ClOsYBnSNtR\n \n BntaJCCmDp\n \n Jerry M. Bowling\n \n nsDFFIdGe\n \n rBgWjWshXBmFggVHl\n \n tqLMENZBUvG\n \n AxStOknDiFZi\n \n mPMXFEhfAxqdo\n \n Jerry M. Bowling\n None\n\n \n False\n \n
\n '} ---------------------- 2010-02-13 11:35:06.000 Found online debuglevel setting: 1 ---------------------- 2010-02-13 11:35:06.000 Setting debuglevel from 0 to 1 ---------------------- 2010-02-13 11:35:06.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-02-13 11:35:06.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-02-13 11:35:06.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-02-13 11:35:06.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-02-13 11:35:07.000 Pickled file is of latest revision. ---------------------- 2010-02-13 11:35:07.000 Original filter string parsed:
2.4.2 2010-02-13 12:35:05.000 search
http://www.tdwg.org/schemas/abcd/2.06 http://www.tdwg.org/schemas/abcd/2.06 IBWetHnL ClOsYBnSNtR BntaJCCmDp Jerry M. Bowling nsDFFIdGe rBgWjWshXBmFggVHl tqLMENZBUvG AxStOknDiFZi mPMXFEhfAxqdo Jerry M. Bowling None False
---------------------- 2010-02-13 11:35:07.000 Filter created: (((((((((("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE IBWetHnL ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ClOsYBnSNtR )) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE BntaJCCmDp )) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Jerry M. Bowling )) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE nsDFFIdGe )) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE rBgWjWshXBmFggVHl )) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE tqLMENZBUvG )) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = AxStOknDiFZi )) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = mPMXFEhfAxqdo )) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Jerry M. Bowling ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" = None )) ---------------------- 2010-02-13 11:35:07.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE IBWetHnL ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ClOsYBnSNtR ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE BntaJCCmDp ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Jerry M. Bowling ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE nsDFFIdGe ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE rBgWjWshXBmFggVHl ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE tqLMENZBUvG ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = AxStOknDiFZi ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = mPMXFEhfAxqdo ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Jerry M. Bowling ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" = None )) ---------------------- 2010-02-13 11:35:07.000 Record Identifier used: v_abcd2v06herpnet_trigger.pk(text) ---------------------- 2010-02-13 11:35:07.000 Use SQL LIMIT to limit the first result set of IDs only to the maximum of 1000 records. ---------------------- 2010-02-13 11:35:07.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06herpnet_trigger"."pk" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'IBWetHnL' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'ClOsYBnSNtR' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'BntaJCCmDp' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Jerry M. Bowling' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'nsDFFIdGe' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'rBgWjWshXBmFggVHl' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'tqLMENZBUvG' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'AxStOknDiFZi' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'mPMXFEhfAxqdo' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Jerry M. Bowling' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" = 'None' )) ORDER BY "v_abcd2v06herpnet_trigger"."pk" LIMIT 1001' ---------------------- 2010-02-13 11:35:07.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 110, in doRequest (self.resultDOM, self.resultStatus) = operationObj.search(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 205, in search (recordset, recStatus) = self._getSearchResultList() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 324, in _getSearchResultList AllIDs = [ item[0] for item in self.execSelect([recID], self.requestObj.filter, orderByList=[recID], limit=start+limit)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 73, in execSelect return self.execSQL(sql, paras) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "ClOsYBnSNtR" ---------------------- 2010-02-13 11:35:07.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2010-02-14 01:40:21.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2010-02-14 00:40:21.000 Logging started. ---------------------- 2010-02-14 00:40:21.000 BioCASe protocol used. ---------------------- 2010-02-14 00:40:21.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2010-02-14 00:40:21.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2010-02-14 00:40:21.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-02-14 00:40:21.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2010-02-14 00:40:21.000 Unknown request type! Default to capabilities. ---------------------- 2010-02-14 00:40:21.000 Destination hostname could not be determined ---------------------- 2010-02-14 00:40:21.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2010-02-14 00:40:21.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-02-14 00:40:21.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-02-14 00:40:21.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2010-02-14 00:40:21.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-02-14 00:40:21.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-02-14 00:40:21.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-02-14 23:27:42.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-02-14 23:27:41.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString HwKQaCjkhBE RcDkxxUodnheWtz DQwRXPhOEPaZthfxWo Jay S. Cox FCloTaMkNCL tsfJMDnZJGYqAzseOpS abHuHoyrPHQviNLLoX MOxrUcPokThsnGIBTOK NtAvdefnTlWaeKzJQd Jay S. Cox
### ERROR LOG The Logging Results: ---------------------- 2010-02-14 22:27:42.000 Logging started. ---------------------- 2010-02-14 22:27:42.000 BioCASe protocol used. ---------------------- 2010-02-14 22:27:42.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-02-14 22:27:42.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-02-14 22:27:42.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-02-14 22:27:42.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-02-14 22:27:42.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-02-14 23:27:41.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n HwKQaCjkhBE\n RcDkxxUodnheWtz\n DQwRXPhOEPaZthfxWo\n Jay S. Cox\n FCloTaMkNCL\n tsfJMDnZJGYqAzseOpS\n abHuHoyrPHQviNLLoX\n MOxrUcPokThsnGIBTOK\n NtAvdefnTlWaeKzJQd\n Jay S. Cox\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-02-14 23:27:41.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n HwKQaCjkhBE\n RcDkxxUodnheWtz\n DQwRXPhOEPaZthfxWo\n Jay S. Cox\n FCloTaMkNCL\n tsfJMDnZJGYqAzseOpS\n abHuHoyrPHQviNLLoX\n MOxrUcPokThsnGIBTOK\n NtAvdefnTlWaeKzJQd\n Jay S. Cox\n\n\n\n \n
'} ---------------------- 2010-02-14 22:27:42.000 Found online debuglevel setting: 1 ---------------------- 2010-02-14 22:27:42.000 Setting debuglevel from 0 to 1 ---------------------- 2010-02-14 22:27:42.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-02-14 22:27:42.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-02-14 22:27:42.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-02-14 22:27:42.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-02-14 22:27:43.000 Pickled file is of latest revision. ---------------------- 2010-02-14 22:27:43.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-02-14 22:27:43.000 Original filter string parsed:
2.4.2 2010-02-14 23:27:41.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString HwKQaCjkhBE RcDkxxUodnheWtz DQwRXPhOEPaZthfxWo Jay S. Cox FCloTaMkNCL tsfJMDnZJGYqAzseOpS abHuHoyrPHQviNLLoX MOxrUcPokThsnGIBTOK NtAvdefnTlWaeKzJQd Jay S. Cox
---------------------- 2010-02-14 22:27:43.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE HwKQaCjkhBE ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = RcDkxxUodnheWtz ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE DQwRXPhOEPaZthfxWo ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Jay S. Cox ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE FCloTaMkNCL ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE tsfJMDnZJGYqAzseOpS ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE abHuHoyrPHQviNLLoX ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = MOxrUcPokThsnGIBTOK ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = NtAvdefnTlWaeKzJQd ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Jay S. Cox )) ---------------------- 2010-02-14 22:27:43.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE HwKQaCjkhBE ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = RcDkxxUodnheWtz ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE DQwRXPhOEPaZthfxWo ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Jay S. Cox ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE FCloTaMkNCL ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE tsfJMDnZJGYqAzseOpS ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE abHuHoyrPHQviNLLoX ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = MOxrUcPokThsnGIBTOK ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = NtAvdefnTlWaeKzJQd ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Jay S. Cox )) ---------------------- 2010-02-14 22:27:43.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE HwKQaCjkhBE ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = RcDkxxUodnheWtz ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE DQwRXPhOEPaZthfxWo ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Jay S. Cox ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE FCloTaMkNCL ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE tsfJMDnZJGYqAzseOpS ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE abHuHoyrPHQviNLLoX ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = MOxrUcPokThsnGIBTOK ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = NtAvdefnTlWaeKzJQd ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Jay S. Cox )) ---------------------- 2010-02-14 22:27:43.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE HwKQaCjkhBE ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = RcDkxxUodnheWtz ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE DQwRXPhOEPaZthfxWo ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Jay S. Cox ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE FCloTaMkNCL ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE tsfJMDnZJGYqAzseOpS ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE abHuHoyrPHQviNLLoX ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = MOxrUcPokThsnGIBTOK ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = NtAvdefnTlWaeKzJQd ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Jay S. Cox )) ---------------------- 2010-02-14 22:27:43.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-02-14 22:27:43.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'HwKQaCjkhBE' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'RcDkxxUodnheWtz' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'DQwRXPhOEPaZthfxWo' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Jay S. Cox' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'FCloTaMkNCL' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'tsfJMDnZJGYqAzseOpS' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'abHuHoyrPHQviNLLoX' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'MOxrUcPokThsnGIBTOK' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'NtAvdefnTlWaeKzJQd' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Jay S. Cox' ))' ---------------------- 2010-02-14 22:27:43.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "RcDkxxUodnheWtz" ---------------------- 2010-02-14 22:27:43.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2010-02-15 16:24:47.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2010-02-15 15:24:47.000 Logging started. ---------------------- 2010-02-15 15:24:47.000 BioCASe protocol used. ---------------------- 2010-02-15 15:24:47.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2010-02-15 15:24:47.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2010-02-15 15:24:47.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-02-15 15:24:47.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2010-02-15 15:24:47.000 Unknown request type! Default to capabilities. ---------------------- 2010-02-15 15:24:47.000 Destination hostname could not be determined ---------------------- 2010-02-15 15:24:47.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2010-02-15 15:24:47.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-02-15 15:24:47.000 Pickled file is of latest revision. ---------------------- 2010-02-15 15:24:47.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2010-02-15 15:24:47.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2010-02-15 15:24:47.000 Reset CMF convenience cache data hash. ---------------------- 2010-02-15 15:24:47.000 Loading CMF from the source XML file. ---------------------- 2010-02-15 15:24:47.000 CMF Version 2.1 detected. ---------------------- 2010-02-15 15:24:47.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2010-02-15 15:24:47.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2010-02-15 15:24:47.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-02-15 15:24:47.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-02-15 15:24:47.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-02-19 01:47:29.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-02-19 01:03:16.74 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-02-19 00:47:29.000 Logging started. ---------------------- 2010-02-19 00:47:29.000 BioCASe protocol used. ---------------------- 2010-02-19 00:47:29.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-02-19 00:47:29.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-02-19 00:47:29.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-02-19 00:47:29.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-02-19 00:47:29.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-02-19 01:03:16.74\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-02-19 01:03:16.74\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-02-19 01:03:16.74\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-02-19 00:47:29.000 Found online debuglevel setting: 1 ---------------------- 2010-02-19 00:47:29.000 Setting debuglevel from 0 to 1 ---------------------- 2010-02-19 00:47:29.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-02-19 00:47:30.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-02-19 00:47:30.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-02-19 00:47:30.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-02-19 00:47:30.000 Pickled file is of latest revision. ---------------------- 2010-02-19 00:47:30.000 Original filter string parsed:
0.1 2010-02-19 01:03:16.74 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-02-19 00:47:30.000 Filter created: None ---------------------- 2010-02-19 00:47:30.000 Compressed filter used: None ---------------------- 2010-02-19 00:47:30.000 Counting total matched records with filter=None ---------------------- 2010-02-19 00:47:30.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-02-19 00:47:30.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-02-24 11:56:20.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-02-24 11:56:20.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString vRnUnxZisn vciwzz@cpuwhs.com VMqmnrVLrQfSEjNnEz jugxlsjrr USA 842771 gvzNJO vciwzz@cpuwhs.com vciwzz@cpuwhs.com jugxlsjrr
### ERROR LOG The Logging Results: ---------------------- 2010-02-24 10:56:20.000 Logging started. ---------------------- 2010-02-24 10:56:20.000 BioCASe protocol used. ---------------------- 2010-02-24 10:56:20.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-02-24 10:56:20.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-02-24 10:56:20.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-02-24 10:56:20.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-02-24 10:56:20.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-02-24 11:56:20.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n vRnUnxZisn\n vciwzz@cpuwhs.com\n VMqmnrVLrQfSEjNnEz\n jugxlsjrr\n USA\n 842771\n gvzNJO\n vciwzz@cpuwhs.com\n vciwzz@cpuwhs.com\n jugxlsjrr\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-02-24 11:56:20.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n vRnUnxZisn\n vciwzz@cpuwhs.com\n VMqmnrVLrQfSEjNnEz\n jugxlsjrr\n USA\n 842771\n gvzNJO\n vciwzz@cpuwhs.com\n vciwzz@cpuwhs.com\n jugxlsjrr\n\n\n\n \n
'} ---------------------- 2010-02-24 10:56:20.000 Found online debuglevel setting: 1 ---------------------- 2010-02-24 10:56:20.000 Setting debuglevel from 0 to 1 ---------------------- 2010-02-24 10:56:20.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-02-24 10:56:21.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-02-24 10:56:21.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-02-24 10:56:21.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-02-24 10:56:21.000 Pickled file is of latest revision. ---------------------- 2010-02-24 10:56:21.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-02-24 10:56:21.000 Original filter string parsed:
2.4.2 2010-02-24 11:56:20.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString vRnUnxZisn vciwzz@cpuwhs.com VMqmnrVLrQfSEjNnEz jugxlsjrr USA 842771 gvzNJO vciwzz@cpuwhs.com vciwzz@cpuwhs.com jugxlsjrr
---------------------- 2010-02-24 10:56:21.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE vRnUnxZisn ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = vciwzz@cpuwhs.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE VMqmnrVLrQfSEjNnEz ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE jugxlsjrr ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 842771 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE gvzNJO ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = vciwzz@cpuwhs.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = vciwzz@cpuwhs.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jugxlsjrr )) ---------------------- 2010-02-24 10:56:21.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE vRnUnxZisn ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = vciwzz@cpuwhs.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE VMqmnrVLrQfSEjNnEz ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE jugxlsjrr ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 842771 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE gvzNJO ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = vciwzz@cpuwhs.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = vciwzz@cpuwhs.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jugxlsjrr )) ---------------------- 2010-02-24 10:56:21.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE vRnUnxZisn ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = vciwzz@cpuwhs.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE VMqmnrVLrQfSEjNnEz ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE jugxlsjrr ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 842771 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE gvzNJO ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = vciwzz@cpuwhs.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = vciwzz@cpuwhs.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jugxlsjrr )) ---------------------- 2010-02-24 10:56:21.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE vRnUnxZisn ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = vciwzz@cpuwhs.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE VMqmnrVLrQfSEjNnEz ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE jugxlsjrr ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 842771 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE gvzNJO ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = vciwzz@cpuwhs.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = vciwzz@cpuwhs.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jugxlsjrr )) ---------------------- 2010-02-24 10:56:21.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-02-24 10:56:21.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'vRnUnxZisn' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'vciwzz@cpuwhs.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'VMqmnrVLrQfSEjNnEz' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'jugxlsjrr' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '842771' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'gvzNJO' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'vciwzz@cpuwhs.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'vciwzz@cpuwhs.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'jugxlsjrr' ))' ---------------------- 2010-02-24 10:56:21.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "vciwzz@cpuwhs.com" ---------------------- 2010-02-24 10:56:21.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-02-25 22:20:46.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-02-25 22:20:45.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString knXiehPODcyZFSCzri DCnpVmgGLJ CliUsgktprZMspm Edward E. Harrell PsrRBQPmhMPCfQxzIFf YtRyMJYJnUqbUKe GaASOEll ucRRMRbFCWTmWRQGnmC NtBTmsMQBEgtHgnvO Edward E. Harrell
### ERROR LOG The Logging Results: ---------------------- 2010-02-25 21:20:46.000 Logging started. ---------------------- 2010-02-25 21:20:46.000 BioCASe protocol used. ---------------------- 2010-02-25 21:20:46.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-02-25 21:20:46.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-02-25 21:20:46.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-02-25 21:20:46.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-02-25 21:20:46.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-02-25 22:20:45.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n knXiehPODcyZFSCzri\n DCnpVmgGLJ\n CliUsgktprZMspm\n Edward E. Harrell\n PsrRBQPmhMPCfQxzIFf\n YtRyMJYJnUqbUKe\n GaASOEll\n ucRRMRbFCWTmWRQGnmC\n NtBTmsMQBEgtHgnvO\n Edward E. Harrell\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-02-25 22:20:45.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n knXiehPODcyZFSCzri\n DCnpVmgGLJ\n CliUsgktprZMspm\n Edward E. Harrell\n PsrRBQPmhMPCfQxzIFf\n YtRyMJYJnUqbUKe\n GaASOEll\n ucRRMRbFCWTmWRQGnmC\n NtBTmsMQBEgtHgnvO\n Edward E. Harrell\n\n\n\n \n
'} ---------------------- 2010-02-25 21:20:46.000 Found online debuglevel setting: 1 ---------------------- 2010-02-25 21:20:46.000 Setting debuglevel from 0 to 1 ---------------------- 2010-02-25 21:20:46.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-02-25 21:20:46.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-02-25 21:20:46.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-02-25 21:20:46.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-02-25 21:20:46.000 Pickled file is of latest revision. ---------------------- 2010-02-25 21:20:46.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-02-25 21:20:46.000 Original filter string parsed:
2.4.2 2010-02-25 22:20:45.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString knXiehPODcyZFSCzri DCnpVmgGLJ CliUsgktprZMspm Edward E. Harrell PsrRBQPmhMPCfQxzIFf YtRyMJYJnUqbUKe GaASOEll ucRRMRbFCWTmWRQGnmC NtBTmsMQBEgtHgnvO Edward E. Harrell
---------------------- 2010-02-25 21:20:46.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE knXiehPODcyZFSCzri ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = DCnpVmgGLJ ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE CliUsgktprZMspm ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Edward E. Harrell ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE PsrRBQPmhMPCfQxzIFf ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE YtRyMJYJnUqbUKe ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE GaASOEll ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ucRRMRbFCWTmWRQGnmC ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = NtBTmsMQBEgtHgnvO ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Edward E. Harrell )) ---------------------- 2010-02-25 21:20:46.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE knXiehPODcyZFSCzri ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = DCnpVmgGLJ ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE CliUsgktprZMspm ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Edward E. Harrell ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE PsrRBQPmhMPCfQxzIFf ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE YtRyMJYJnUqbUKe ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE GaASOEll ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ucRRMRbFCWTmWRQGnmC ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = NtBTmsMQBEgtHgnvO ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Edward E. Harrell )) ---------------------- 2010-02-25 21:20:46.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE knXiehPODcyZFSCzri ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = DCnpVmgGLJ ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE CliUsgktprZMspm ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Edward E. Harrell ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE PsrRBQPmhMPCfQxzIFf ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE YtRyMJYJnUqbUKe ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE GaASOEll ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ucRRMRbFCWTmWRQGnmC ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = NtBTmsMQBEgtHgnvO ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Edward E. Harrell )) ---------------------- 2010-02-25 21:20:46.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE knXiehPODcyZFSCzri ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = DCnpVmgGLJ ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE CliUsgktprZMspm ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Edward E. Harrell ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE PsrRBQPmhMPCfQxzIFf ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE YtRyMJYJnUqbUKe ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE GaASOEll ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ucRRMRbFCWTmWRQGnmC ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = NtBTmsMQBEgtHgnvO ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Edward E. Harrell )) ---------------------- 2010-02-25 21:20:46.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-02-25 21:20:46.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'knXiehPODcyZFSCzri' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'DCnpVmgGLJ' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'CliUsgktprZMspm' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Edward E. Harrell' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'PsrRBQPmhMPCfQxzIFf' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'YtRyMJYJnUqbUKe' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'GaASOEll' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'ucRRMRbFCWTmWRQGnmC' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'NtBTmsMQBEgtHgnvO' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Edward E. Harrell' ))' ---------------------- 2010-02-25 21:20:46.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "DCnpVmgGLJ" ---------------------- 2010-02-25 21:20:46.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-02-26 01:44:03.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-02-26 01:00:11.79 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-02-26 00:44:03.000 Logging started. ---------------------- 2010-02-26 00:44:03.000 BioCASe protocol used. ---------------------- 2010-02-26 00:44:03.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-02-26 00:44:03.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-02-26 00:44:03.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-02-26 00:44:03.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-02-26 00:44:03.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-02-26 01:00:11.79\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-02-26 01:00:11.79\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-02-26 01:00:11.79\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-02-26 00:44:03.000 Found online debuglevel setting: 1 ---------------------- 2010-02-26 00:44:03.000 Setting debuglevel from 0 to 1 ---------------------- 2010-02-26 00:44:03.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-02-26 00:44:03.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-02-26 00:44:03.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-02-26 00:44:03.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-02-26 00:44:03.000 Pickled file is of latest revision. ---------------------- 2010-02-26 00:44:03.000 Original filter string parsed:
0.1 2010-02-26 01:00:11.79 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-02-26 00:44:03.000 Filter created: None ---------------------- 2010-02-26 00:44:03.000 Compressed filter used: None ---------------------- 2010-02-26 00:44:03.000 Counting total matched records with filter=None ---------------------- 2010-02-26 00:44:03.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-02-26 00:44:03.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-02-26 09:18:16.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-02-26 09:18:16.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString xnetbmzoovJX BsKMQWCECmOhG PUPwtZeqccDjbhNY Enrique M. May UQolajSvLPbtPpXkize zDrEJPSOaUwQBMH htgVnlLvzYNtphvsgYv aDYXcdouSQaUiDSH xyScZCSifDeItuNspa Enrique M. May
### ERROR LOG The Logging Results: ---------------------- 2010-02-26 08:18:16.000 Logging started. ---------------------- 2010-02-26 08:18:16.000 BioCASe protocol used. ---------------------- 2010-02-26 08:18:16.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-02-26 08:18:16.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-02-26 08:18:16.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-02-26 08:18:17.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-02-26 08:18:17.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-02-26 09:18:16.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n xnetbmzoovJX\n BsKMQWCECmOhG\n PUPwtZeqccDjbhNY\n Enrique M. May\n UQolajSvLPbtPpXkize\n zDrEJPSOaUwQBMH\n htgVnlLvzYNtphvsgYv\n aDYXcdouSQaUiDSH\n xyScZCSifDeItuNspa\n Enrique M. May\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-02-26 09:18:16.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n xnetbmzoovJX\n BsKMQWCECmOhG\n PUPwtZeqccDjbhNY\n Enrique M. May\n UQolajSvLPbtPpXkize\n zDrEJPSOaUwQBMH\n htgVnlLvzYNtphvsgYv\n aDYXcdouSQaUiDSH\n xyScZCSifDeItuNspa\n Enrique M. May\n\n\n\n \n
'} ---------------------- 2010-02-26 08:18:17.000 Found online debuglevel setting: 1 ---------------------- 2010-02-26 08:18:17.000 Setting debuglevel from 0 to 1 ---------------------- 2010-02-26 08:18:17.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-02-26 08:18:17.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-02-26 08:18:17.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-02-26 08:18:17.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-02-26 08:18:17.000 Pickled file is of latest revision. ---------------------- 2010-02-26 08:18:17.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-02-26 08:18:17.000 Original filter string parsed:
2.4.2 2010-02-26 09:18:16.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString xnetbmzoovJX BsKMQWCECmOhG PUPwtZeqccDjbhNY Enrique M. May UQolajSvLPbtPpXkize zDrEJPSOaUwQBMH htgVnlLvzYNtphvsgYv aDYXcdouSQaUiDSH xyScZCSifDeItuNspa Enrique M. May
---------------------- 2010-02-26 08:18:17.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE xnetbmzoovJX ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = BsKMQWCECmOhG ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE PUPwtZeqccDjbhNY ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Enrique M. May ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE UQolajSvLPbtPpXkize ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE zDrEJPSOaUwQBMH ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE htgVnlLvzYNtphvsgYv ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = aDYXcdouSQaUiDSH ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = xyScZCSifDeItuNspa ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Enrique M. May )) ---------------------- 2010-02-26 08:18:17.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE xnetbmzoovJX ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = BsKMQWCECmOhG ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE PUPwtZeqccDjbhNY ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Enrique M. May ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE UQolajSvLPbtPpXkize ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE zDrEJPSOaUwQBMH ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE htgVnlLvzYNtphvsgYv ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = aDYXcdouSQaUiDSH ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = xyScZCSifDeItuNspa ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Enrique M. May )) ---------------------- 2010-02-26 08:18:17.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE xnetbmzoovJX ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = BsKMQWCECmOhG ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE PUPwtZeqccDjbhNY ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Enrique M. May ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE UQolajSvLPbtPpXkize ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE zDrEJPSOaUwQBMH ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE htgVnlLvzYNtphvsgYv ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = aDYXcdouSQaUiDSH ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = xyScZCSifDeItuNspa ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Enrique M. May )) ---------------------- 2010-02-26 08:18:17.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE xnetbmzoovJX ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = BsKMQWCECmOhG ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE PUPwtZeqccDjbhNY ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Enrique M. May ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE UQolajSvLPbtPpXkize ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE zDrEJPSOaUwQBMH ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE htgVnlLvzYNtphvsgYv ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = aDYXcdouSQaUiDSH ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = xyScZCSifDeItuNspa ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Enrique M. May )) ---------------------- 2010-02-26 08:18:17.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-02-26 08:18:17.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'xnetbmzoovJX' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'BsKMQWCECmOhG' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'PUPwtZeqccDjbhNY' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Enrique M. May' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'UQolajSvLPbtPpXkize' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'zDrEJPSOaUwQBMH' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'htgVnlLvzYNtphvsgYv' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'aDYXcdouSQaUiDSH' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'xyScZCSifDeItuNspa' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Enrique M. May' ))' ---------------------- 2010-02-26 08:18:17.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "BsKMQWCECmOhG" ---------------------- 2010-02-26 08:18:17.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-02-26 19:02:00.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-02-26 19:02:00.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString IjkdyvPrkaAvvsRme FGhxyrNqeiqWFWnKPP ndqlRkDkgusZol Junior R. Wright JwLMxVPFEdGzeiwW ByFqLKlUOxLjMKqkGqq qBuzyLsOfJonS CnzGsJHIsEXf PTwEpaHGQjhrjk Junior R. Wright
### ERROR LOG The Logging Results: ---------------------- 2010-02-26 18:02:00.000 Logging started. ---------------------- 2010-02-26 18:02:00.000 BioCASe protocol used. ---------------------- 2010-02-26 18:02:00.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-02-26 18:02:00.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-02-26 18:02:00.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-02-26 18:02:00.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-02-26 18:02:00.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-02-26 19:02:00.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n IjkdyvPrkaAvvsRme\n FGhxyrNqeiqWFWnKPP\n ndqlRkDkgusZol\n Junior R. Wright\n JwLMxVPFEdGzeiwW\n ByFqLKlUOxLjMKqkGqq\n qBuzyLsOfJonS\n CnzGsJHIsEXf\n PTwEpaHGQjhrjk\n Junior R. Wright\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-02-26 19:02:00.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n IjkdyvPrkaAvvsRme\n FGhxyrNqeiqWFWnKPP\n ndqlRkDkgusZol\n Junior R. Wright\n JwLMxVPFEdGzeiwW\n ByFqLKlUOxLjMKqkGqq\n qBuzyLsOfJonS\n CnzGsJHIsEXf\n PTwEpaHGQjhrjk\n Junior R. Wright\n\n\n\n \n
'} ---------------------- 2010-02-26 18:02:00.000 Found online debuglevel setting: 1 ---------------------- 2010-02-26 18:02:00.000 Setting debuglevel from 0 to 1 ---------------------- 2010-02-26 18:02:00.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-02-26 18:02:00.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-02-26 18:02:00.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-02-26 18:02:00.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-02-26 18:02:01.000 Pickled file is of latest revision. ---------------------- 2010-02-26 18:02:01.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-02-26 18:02:01.000 Original filter string parsed:
2.4.2 2010-02-26 19:02:00.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString IjkdyvPrkaAvvsRme FGhxyrNqeiqWFWnKPP ndqlRkDkgusZol Junior R. Wright JwLMxVPFEdGzeiwW ByFqLKlUOxLjMKqkGqq qBuzyLsOfJonS CnzGsJHIsEXf PTwEpaHGQjhrjk Junior R. Wright
---------------------- 2010-02-26 18:02:01.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE IjkdyvPrkaAvvsRme ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = FGhxyrNqeiqWFWnKPP ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE ndqlRkDkgusZol ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Junior R. Wright ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE JwLMxVPFEdGzeiwW ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE ByFqLKlUOxLjMKqkGqq ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE qBuzyLsOfJonS ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = CnzGsJHIsEXf ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = PTwEpaHGQjhrjk ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Junior R. Wright )) ---------------------- 2010-02-26 18:02:01.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE IjkdyvPrkaAvvsRme ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = FGhxyrNqeiqWFWnKPP ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE ndqlRkDkgusZol ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Junior R. Wright ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE JwLMxVPFEdGzeiwW ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE ByFqLKlUOxLjMKqkGqq ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE qBuzyLsOfJonS ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = CnzGsJHIsEXf ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = PTwEpaHGQjhrjk ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Junior R. Wright )) ---------------------- 2010-02-26 18:02:01.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE IjkdyvPrkaAvvsRme ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = FGhxyrNqeiqWFWnKPP ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE ndqlRkDkgusZol ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Junior R. Wright ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE JwLMxVPFEdGzeiwW ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE ByFqLKlUOxLjMKqkGqq ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE qBuzyLsOfJonS ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = CnzGsJHIsEXf ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = PTwEpaHGQjhrjk ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Junior R. Wright )) ---------------------- 2010-02-26 18:02:01.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE IjkdyvPrkaAvvsRme ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = FGhxyrNqeiqWFWnKPP ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE ndqlRkDkgusZol ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Junior R. Wright ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE JwLMxVPFEdGzeiwW ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE ByFqLKlUOxLjMKqkGqq ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE qBuzyLsOfJonS ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = CnzGsJHIsEXf ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = PTwEpaHGQjhrjk ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Junior R. Wright )) ---------------------- 2010-02-26 18:02:01.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-02-26 18:02:01.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'IjkdyvPrkaAvvsRme' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'FGhxyrNqeiqWFWnKPP' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'ndqlRkDkgusZol' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Junior R. Wright' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'JwLMxVPFEdGzeiwW' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'ByFqLKlUOxLjMKqkGqq' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'qBuzyLsOfJonS' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'CnzGsJHIsEXf' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'PTwEpaHGQjhrjk' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Junior R. Wright' ))' ---------------------- 2010-02-26 18:02:01.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "FGhxyrNqeiqWFWnKPP" ---------------------- 2010-02-26 18:02:01.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-02-27 04:54:59.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-02-27 04:54:58.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString daweegzSZXfUHzx ACPXewJlweE vUtDUkaRv Kenneth G. Sparks BKxnkDJwQICPuSMIC yTcCEEXWXAgrHchI fAUJlkzHYoxG prThdghwOKFDqL xGNfJeJpN Kenneth G. Sparks
### ERROR LOG The Logging Results: ---------------------- 2010-02-27 03:54:59.000 Logging started. ---------------------- 2010-02-27 03:54:59.000 BioCASe protocol used. ---------------------- 2010-02-27 03:54:59.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-02-27 03:54:59.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-02-27 03:54:59.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-02-27 03:54:59.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-02-27 03:54:59.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-02-27 04:54:58.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n daweegzSZXfUHzx\n ACPXewJlweE\n vUtDUkaRv\n Kenneth G. Sparks\n BKxnkDJwQICPuSMIC\n yTcCEEXWXAgrHchI\n fAUJlkzHYoxG\n prThdghwOKFDqL\n xGNfJeJpN\n Kenneth G. Sparks\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-02-27 04:54:58.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n daweegzSZXfUHzx\n ACPXewJlweE\n vUtDUkaRv\n Kenneth G. Sparks\n BKxnkDJwQICPuSMIC\n yTcCEEXWXAgrHchI\n fAUJlkzHYoxG\n prThdghwOKFDqL\n xGNfJeJpN\n Kenneth G. Sparks\n\n\n\n \n
'} ---------------------- 2010-02-27 03:54:59.000 Found online debuglevel setting: 1 ---------------------- 2010-02-27 03:54:59.000 Setting debuglevel from 0 to 1 ---------------------- 2010-02-27 03:54:59.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-02-27 03:54:59.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-02-27 03:54:59.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-02-27 03:54:59.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-02-27 03:55:00.000 Pickled file is of latest revision. ---------------------- 2010-02-27 03:55:00.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-02-27 03:55:00.000 Original filter string parsed:
2.4.2 2010-02-27 04:54:58.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString daweegzSZXfUHzx ACPXewJlweE vUtDUkaRv Kenneth G. Sparks BKxnkDJwQICPuSMIC yTcCEEXWXAgrHchI fAUJlkzHYoxG prThdghwOKFDqL xGNfJeJpN Kenneth G. Sparks
---------------------- 2010-02-27 03:55:00.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE daweegzSZXfUHzx ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ACPXewJlweE ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE vUtDUkaRv ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Kenneth G. Sparks ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE BKxnkDJwQICPuSMIC ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE yTcCEEXWXAgrHchI ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE fAUJlkzHYoxG ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = prThdghwOKFDqL ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = xGNfJeJpN ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Kenneth G. Sparks )) ---------------------- 2010-02-27 03:55:00.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE daweegzSZXfUHzx ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ACPXewJlweE ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE vUtDUkaRv ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Kenneth G. Sparks ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE BKxnkDJwQICPuSMIC ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE yTcCEEXWXAgrHchI ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE fAUJlkzHYoxG ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = prThdghwOKFDqL ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = xGNfJeJpN ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Kenneth G. Sparks )) ---------------------- 2010-02-27 03:55:00.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE daweegzSZXfUHzx ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ACPXewJlweE ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE vUtDUkaRv ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Kenneth G. Sparks ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE BKxnkDJwQICPuSMIC ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE yTcCEEXWXAgrHchI ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE fAUJlkzHYoxG ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = prThdghwOKFDqL ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = xGNfJeJpN ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Kenneth G. Sparks )) ---------------------- 2010-02-27 03:55:00.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE daweegzSZXfUHzx ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ACPXewJlweE ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE vUtDUkaRv ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Kenneth G. Sparks ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE BKxnkDJwQICPuSMIC ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE yTcCEEXWXAgrHchI ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE fAUJlkzHYoxG ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = prThdghwOKFDqL ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = xGNfJeJpN ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Kenneth G. Sparks )) ---------------------- 2010-02-27 03:55:00.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-02-27 03:55:00.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'daweegzSZXfUHzx' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'ACPXewJlweE' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'vUtDUkaRv' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Kenneth G. Sparks' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'BKxnkDJwQICPuSMIC' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'yTcCEEXWXAgrHchI' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'fAUJlkzHYoxG' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'prThdghwOKFDqL' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'xGNfJeJpN' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Kenneth G. Sparks' ))' ---------------------- 2010-02-27 03:55:00.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "ACPXewJlweE" ---------------------- 2010-02-27 03:55:00.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-02-27 20:03:59.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2010-02-27 19:03:59.000 Logging started. ---------------------- 2010-02-27 19:03:59.000 BioCASe protocol used. ---------------------- 2010-02-27 19:03:59.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-02-27 19:03:59.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-02-27 19:03:59.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-02-27 19:03:59.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2010-02-27 19:03:59.000 Unknown request type! Default to capabilities. ---------------------- 2010-02-27 19:03:59.000 Destination hostname could not be determined ---------------------- 2010-02-27 19:03:59.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2010-02-27 19:03:59.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2010-02-27 19:03:59.000 Reset CMF convenience cache data hash. ---------------------- 2010-02-27 19:03:59.000 Loading CMF from the source XML file. ---------------------- 2010-02-27 19:03:59.000 CMF Version 2.1 detected. ---------------------- 2010-02-27 19:04:00.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2010-02-27 19:04:00.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2010-02-27 19:04:00.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-02-27 19:04:00.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-02-27 19:04:00.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-02-27 19:04:00.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-02-27 19:04:00.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-02-27 19:04:00.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2010-03-02 07:27:55.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2010-03-02 06:27:55.000 Logging started. ---------------------- 2010-03-02 06:27:55.000 BioCASe protocol used. ---------------------- 2010-03-02 06:27:55.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2010-03-02 06:27:55.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2010-03-02 06:27:55.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-03-02 06:27:55.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2010-03-02 06:27:55.000 Unknown request type! Default to capabilities. ---------------------- 2010-03-02 06:27:55.000 Destination hostname could not be determined ---------------------- 2010-03-02 06:27:55.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2010-03-02 06:27:55.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-03-02 06:27:55.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-03-02 06:27:55.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2010-03-02 06:27:55.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-03-02 06:27:55.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-03-02 06:27:55.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-03-02 23:15:06.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-03-02 23:15:05.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString gQNhKrcydpDj AGbkIFCTZFiem rJcOyrNuL Steven J. Heiden eEmvrcTkxv ClnyBcUQFQnyeUKHY wWWnCUkifuaFk XquhErAdNWnnZvckzv LjfzpIjcrKxLMDvDo Steven J. Heiden
### ERROR LOG The Logging Results: ---------------------- 2010-03-02 22:15:06.000 Logging started. ---------------------- 2010-03-02 22:15:06.000 BioCASe protocol used. ---------------------- 2010-03-02 22:15:06.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-03-02 22:15:06.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-03-02 22:15:06.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-03-02 22:15:06.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-03-02 22:15:06.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-03-02 23:15:05.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n gQNhKrcydpDj\n AGbkIFCTZFiem\n rJcOyrNuL\n Steven J. Heiden\n eEmvrcTkxv\n ClnyBcUQFQnyeUKHY\n wWWnCUkifuaFk\n XquhErAdNWnnZvckzv\n LjfzpIjcrKxLMDvDo\n Steven J. Heiden\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-03-02 23:15:05.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n gQNhKrcydpDj\n AGbkIFCTZFiem\n rJcOyrNuL\n Steven J. Heiden\n eEmvrcTkxv\n ClnyBcUQFQnyeUKHY\n wWWnCUkifuaFk\n XquhErAdNWnnZvckzv\n LjfzpIjcrKxLMDvDo\n Steven J. Heiden\n\n\n\n \n
'} ---------------------- 2010-03-02 22:15:06.000 Found online debuglevel setting: 1 ---------------------- 2010-03-02 22:15:06.000 Setting debuglevel from 0 to 1 ---------------------- 2010-03-02 22:15:06.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-03-02 22:15:07.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-03-02 22:15:07.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-03-02 22:15:07.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-03-02 22:15:07.000 Pickled file is of latest revision. ---------------------- 2010-03-02 22:15:07.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-03-02 22:15:07.000 Original filter string parsed:
2.4.2 2010-03-02 23:15:05.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString gQNhKrcydpDj AGbkIFCTZFiem rJcOyrNuL Steven J. Heiden eEmvrcTkxv ClnyBcUQFQnyeUKHY wWWnCUkifuaFk XquhErAdNWnnZvckzv LjfzpIjcrKxLMDvDo Steven J. Heiden
---------------------- 2010-03-02 22:15:07.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE gQNhKrcydpDj ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = AGbkIFCTZFiem ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE rJcOyrNuL ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Steven J. Heiden ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE eEmvrcTkxv ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE ClnyBcUQFQnyeUKHY ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE wWWnCUkifuaFk ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = XquhErAdNWnnZvckzv ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = LjfzpIjcrKxLMDvDo ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Steven J. Heiden )) ---------------------- 2010-03-02 22:15:07.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE gQNhKrcydpDj ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = AGbkIFCTZFiem ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE rJcOyrNuL ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Steven J. Heiden ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE eEmvrcTkxv ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE ClnyBcUQFQnyeUKHY ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE wWWnCUkifuaFk ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = XquhErAdNWnnZvckzv ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = LjfzpIjcrKxLMDvDo ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Steven J. Heiden )) ---------------------- 2010-03-02 22:15:07.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE gQNhKrcydpDj ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = AGbkIFCTZFiem ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE rJcOyrNuL ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Steven J. Heiden ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE eEmvrcTkxv ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE ClnyBcUQFQnyeUKHY ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE wWWnCUkifuaFk ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = XquhErAdNWnnZvckzv ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = LjfzpIjcrKxLMDvDo ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Steven J. Heiden )) ---------------------- 2010-03-02 22:15:07.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE gQNhKrcydpDj ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = AGbkIFCTZFiem ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE rJcOyrNuL ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Steven J. Heiden ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE eEmvrcTkxv ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE ClnyBcUQFQnyeUKHY ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE wWWnCUkifuaFk ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = XquhErAdNWnnZvckzv ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = LjfzpIjcrKxLMDvDo ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Steven J. Heiden )) ---------------------- 2010-03-02 22:15:07.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-03-02 22:15:07.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'gQNhKrcydpDj' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'AGbkIFCTZFiem' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'rJcOyrNuL' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Steven J. Heiden' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'eEmvrcTkxv' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'ClnyBcUQFQnyeUKHY' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'wWWnCUkifuaFk' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'XquhErAdNWnnZvckzv' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'LjfzpIjcrKxLMDvDo' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Steven J. Heiden' ))' ---------------------- 2010-03-02 22:15:07.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "AGbkIFCTZFiem" ---------------------- 2010-03-02 22:15:07.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2010-03-03 21:04:42.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2010-03-03 20:04:42.000 Logging started. ---------------------- 2010-03-03 20:04:42.000 BioCASe protocol used. ---------------------- 2010-03-03 20:04:42.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2010-03-03 20:04:42.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2010-03-03 20:04:42.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-03-03 20:04:42.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2010-03-03 20:04:42.000 Unknown request type! Default to capabilities. ---------------------- 2010-03-03 20:04:42.000 Destination hostname could not be determined ---------------------- 2010-03-03 20:04:42.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2010-03-03 20:04:42.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-03-03 20:04:42.000 Pickled file is of latest revision. ---------------------- 2010-03-03 20:04:42.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2010-03-03 20:04:42.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2010-03-03 20:04:42.000 Reset CMF convenience cache data hash. ---------------------- 2010-03-03 20:04:42.000 Loading CMF from the source XML file. ---------------------- 2010-03-03 20:04:42.000 CMF Version 2.1 detected. ---------------------- 2010-03-03 20:04:43.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2010-03-03 20:04:43.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2010-03-03 20:04:43.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-03-03 20:04:43.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-03-03 20:04:43.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-03-05 01:43:38.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-03-05 01:00:08.90 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-03-05 00:43:38.000 Logging started. ---------------------- 2010-03-05 00:43:38.000 BioCASe protocol used. ---------------------- 2010-03-05 00:43:38.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-03-05 00:43:38.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-03-05 00:43:38.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-03-05 00:43:38.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-03-05 00:43:38.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-03-05 01:00:08.90\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-03-05 01:00:08.90\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-03-05 01:00:08.90\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-03-05 00:43:38.000 Found online debuglevel setting: 1 ---------------------- 2010-03-05 00:43:38.000 Setting debuglevel from 0 to 1 ---------------------- 2010-03-05 00:43:38.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-03-05 00:43:38.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-03-05 00:43:38.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-03-05 00:43:38.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-03-05 00:43:39.000 Pickled file is of latest revision. ---------------------- 2010-03-05 00:43:39.000 Original filter string parsed:
0.1 2010-03-05 01:00:08.90 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-03-05 00:43:39.000 Filter created: None ---------------------- 2010-03-05 00:43:39.000 Compressed filter used: None ---------------------- 2010-03-05 00:43:39.000 Counting total matched records with filter=None ---------------------- 2010-03-05 00:43:39.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-03-05 00:43:39.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-03-07 23:40:25.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-03-07 23:40:24.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString TjzTTVsqb CQgxNBLLLhKvAcCeA MroQzDfvESCeivkk Francis J. Livingstone CktWLHCPA OZRBESGNobhLrC zUdxGNlTkImah GpEYMsIkvszMkyIZTZ SxJxgWYoywugOlLgt Francis J. Livingstone
### ERROR LOG The Logging Results: ---------------------- 2010-03-07 22:40:25.000 Logging started. ---------------------- 2010-03-07 22:40:25.000 BioCASe protocol used. ---------------------- 2010-03-07 22:40:25.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-03-07 22:40:25.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-03-07 22:40:25.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-03-07 22:40:25.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-03-07 22:40:25.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-03-07 23:40:24.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n TjzTTVsqb\n CQgxNBLLLhKvAcCeA\n MroQzDfvESCeivkk\n Francis J. Livingstone\n CktWLHCPA\n OZRBESGNobhLrC\n zUdxGNlTkImah\n GpEYMsIkvszMkyIZTZ\n SxJxgWYoywugOlLgt\n Francis J. Livingstone\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-03-07 23:40:24.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n TjzTTVsqb\n CQgxNBLLLhKvAcCeA\n MroQzDfvESCeivkk\n Francis J. Livingstone\n CktWLHCPA\n OZRBESGNobhLrC\n zUdxGNlTkImah\n GpEYMsIkvszMkyIZTZ\n SxJxgWYoywugOlLgt\n Francis J. Livingstone\n\n\n\n \n
'} ---------------------- 2010-03-07 22:40:25.000 Found online debuglevel setting: 1 ---------------------- 2010-03-07 22:40:25.000 Setting debuglevel from 0 to 1 ---------------------- 2010-03-07 22:40:25.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-03-07 22:40:25.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-03-07 22:40:25.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-03-07 22:40:25.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-03-07 22:40:26.000 Pickled file is of latest revision. ---------------------- 2010-03-07 22:40:26.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-03-07 22:40:26.000 Original filter string parsed:
2.4.2 2010-03-07 23:40:24.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString TjzTTVsqb CQgxNBLLLhKvAcCeA MroQzDfvESCeivkk Francis J. Livingstone CktWLHCPA OZRBESGNobhLrC zUdxGNlTkImah GpEYMsIkvszMkyIZTZ SxJxgWYoywugOlLgt Francis J. Livingstone
---------------------- 2010-03-07 22:40:26.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE TjzTTVsqb ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = CQgxNBLLLhKvAcCeA ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE MroQzDfvESCeivkk ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Francis J. Livingstone ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE CktWLHCPA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE OZRBESGNobhLrC ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE zUdxGNlTkImah ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = GpEYMsIkvszMkyIZTZ ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = SxJxgWYoywugOlLgt ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Francis J. Livingstone )) ---------------------- 2010-03-07 22:40:26.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE TjzTTVsqb ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = CQgxNBLLLhKvAcCeA ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE MroQzDfvESCeivkk ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Francis J. Livingstone ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE CktWLHCPA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE OZRBESGNobhLrC ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE zUdxGNlTkImah ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = GpEYMsIkvszMkyIZTZ ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = SxJxgWYoywugOlLgt ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Francis J. Livingstone )) ---------------------- 2010-03-07 22:40:26.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE TjzTTVsqb ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = CQgxNBLLLhKvAcCeA ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE MroQzDfvESCeivkk ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Francis J. Livingstone ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE CktWLHCPA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE OZRBESGNobhLrC ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE zUdxGNlTkImah ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = GpEYMsIkvszMkyIZTZ ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = SxJxgWYoywugOlLgt ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Francis J. Livingstone )) ---------------------- 2010-03-07 22:40:26.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE TjzTTVsqb ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = CQgxNBLLLhKvAcCeA ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE MroQzDfvESCeivkk ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Francis J. Livingstone ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE CktWLHCPA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE OZRBESGNobhLrC ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE zUdxGNlTkImah ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = GpEYMsIkvszMkyIZTZ ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = SxJxgWYoywugOlLgt ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Francis J. Livingstone )) ---------------------- 2010-03-07 22:40:26.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-03-07 22:40:26.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'TjzTTVsqb' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'CQgxNBLLLhKvAcCeA' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'MroQzDfvESCeivkk' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Francis J. Livingstone' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'CktWLHCPA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'OZRBESGNobhLrC' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'zUdxGNlTkImah' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'GpEYMsIkvszMkyIZTZ' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'SxJxgWYoywugOlLgt' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Francis J. Livingstone' ))' ---------------------- 2010-03-07 22:40:26.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "CQgxNBLLLhKvAcCeA" ---------------------- 2010-03-07 22:40:26.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-03-08 19:07:58.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-03-08 19:07:58.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString qzlDouZlYuzVGrjGST HtrkPyDj HXVkzGcAQbzzYQqoGkw Andrew D. Barrett XQDwKcQPaaNQk WgnJjguuFNhkx IKNpNykWpJOIg IQZgqyPYFoOLDas UtRxlBaMvotOq Andrew D. Barrett
### ERROR LOG The Logging Results: ---------------------- 2010-03-08 18:07:58.000 Logging started. ---------------------- 2010-03-08 18:07:58.000 BioCASe protocol used. ---------------------- 2010-03-08 18:07:58.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-03-08 18:07:58.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-03-08 18:07:58.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-03-08 18:07:58.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-03-08 18:07:58.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-03-08 19:07:58.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n qzlDouZlYuzVGrjGST\n HtrkPyDj\n HXVkzGcAQbzzYQqoGkw\n Andrew D. Barrett\n XQDwKcQPaaNQk\n WgnJjguuFNhkx\n IKNpNykWpJOIg\n IQZgqyPYFoOLDas\n UtRxlBaMvotOq\n Andrew D. Barrett\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-03-08 19:07:58.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n qzlDouZlYuzVGrjGST\n HtrkPyDj\n HXVkzGcAQbzzYQqoGkw\n Andrew D. Barrett\n XQDwKcQPaaNQk\n WgnJjguuFNhkx\n IKNpNykWpJOIg\n IQZgqyPYFoOLDas\n UtRxlBaMvotOq\n Andrew D. Barrett\n\n\n\n \n
'} ---------------------- 2010-03-08 18:07:58.000 Found online debuglevel setting: 1 ---------------------- 2010-03-08 18:07:58.000 Setting debuglevel from 0 to 1 ---------------------- 2010-03-08 18:07:58.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-03-08 18:07:58.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-03-08 18:07:58.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-03-08 18:07:58.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-03-08 18:07:59.000 Pickled file is of latest revision. ---------------------- 2010-03-08 18:07:59.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-03-08 18:07:59.000 Original filter string parsed:
2.4.2 2010-03-08 19:07:58.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString qzlDouZlYuzVGrjGST HtrkPyDj HXVkzGcAQbzzYQqoGkw Andrew D. Barrett XQDwKcQPaaNQk WgnJjguuFNhkx IKNpNykWpJOIg IQZgqyPYFoOLDas UtRxlBaMvotOq Andrew D. Barrett
---------------------- 2010-03-08 18:07:59.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE qzlDouZlYuzVGrjGST ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = HtrkPyDj ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE HXVkzGcAQbzzYQqoGkw ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Andrew D. Barrett ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE XQDwKcQPaaNQk ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE WgnJjguuFNhkx ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE IKNpNykWpJOIg ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = IQZgqyPYFoOLDas ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = UtRxlBaMvotOq ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Andrew D. Barrett )) ---------------------- 2010-03-08 18:07:59.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE qzlDouZlYuzVGrjGST ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = HtrkPyDj ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE HXVkzGcAQbzzYQqoGkw ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Andrew D. Barrett ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE XQDwKcQPaaNQk ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE WgnJjguuFNhkx ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE IKNpNykWpJOIg ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = IQZgqyPYFoOLDas ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = UtRxlBaMvotOq ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Andrew D. Barrett )) ---------------------- 2010-03-08 18:07:59.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE qzlDouZlYuzVGrjGST ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = HtrkPyDj ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE HXVkzGcAQbzzYQqoGkw ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Andrew D. Barrett ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE XQDwKcQPaaNQk ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE WgnJjguuFNhkx ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE IKNpNykWpJOIg ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = IQZgqyPYFoOLDas ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = UtRxlBaMvotOq ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Andrew D. Barrett )) ---------------------- 2010-03-08 18:07:59.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE qzlDouZlYuzVGrjGST ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = HtrkPyDj ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE HXVkzGcAQbzzYQqoGkw ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Andrew D. Barrett ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE XQDwKcQPaaNQk ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE WgnJjguuFNhkx ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE IKNpNykWpJOIg ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = IQZgqyPYFoOLDas ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = UtRxlBaMvotOq ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Andrew D. Barrett )) ---------------------- 2010-03-08 18:07:59.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-03-08 18:07:59.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'qzlDouZlYuzVGrjGST' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'HtrkPyDj' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'HXVkzGcAQbzzYQqoGkw' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Andrew D. Barrett' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'XQDwKcQPaaNQk' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'WgnJjguuFNhkx' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'IKNpNykWpJOIg' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'IQZgqyPYFoOLDas' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'UtRxlBaMvotOq' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Andrew D. Barrett' ))' ---------------------- 2010-03-08 18:07:59.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "HtrkPyDj" ---------------------- 2010-03-08 18:07:59.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-03-09 13:01:39.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-03-09 13:01:39.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString yCLgBQaHQYH RDLBxWstJByibvuPaq okGXukXxOpJvGWXfBNB John L. Harrington HKWzHAFkpRFZMwq kQKcyrCNmFfqZfbgR tKSWgPotogS LPGuhaxkpNREtNG cavsmicfgOHwycNgnn John L. Harrington
### ERROR LOG The Logging Results: ---------------------- 2010-03-09 12:01:39.000 Logging started. ---------------------- 2010-03-09 12:01:39.000 BioCASe protocol used. ---------------------- 2010-03-09 12:01:39.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-03-09 12:01:39.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-03-09 12:01:39.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-03-09 12:01:39.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-03-09 12:01:39.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-03-09 13:01:39.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n yCLgBQaHQYH\n RDLBxWstJByibvuPaq\n okGXukXxOpJvGWXfBNB\n John L. Harrington\n HKWzHAFkpRFZMwq\n kQKcyrCNmFfqZfbgR\n tKSWgPotogS\n LPGuhaxkpNREtNG\n cavsmicfgOHwycNgnn\n John L. Harrington\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-03-09 13:01:39.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n yCLgBQaHQYH\n RDLBxWstJByibvuPaq\n okGXukXxOpJvGWXfBNB\n John L. Harrington\n HKWzHAFkpRFZMwq\n kQKcyrCNmFfqZfbgR\n tKSWgPotogS\n LPGuhaxkpNREtNG\n cavsmicfgOHwycNgnn\n John L. Harrington\n\n\n\n \n
'} ---------------------- 2010-03-09 12:01:39.000 Found online debuglevel setting: 1 ---------------------- 2010-03-09 12:01:39.000 Setting debuglevel from 0 to 1 ---------------------- 2010-03-09 12:01:39.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-03-09 12:01:39.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-03-09 12:01:39.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-03-09 12:01:39.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-03-09 12:01:40.000 Pickled file is of latest revision. ---------------------- 2010-03-09 12:01:40.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-03-09 12:01:40.000 Original filter string parsed:
2.4.2 2010-03-09 13:01:39.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString yCLgBQaHQYH RDLBxWstJByibvuPaq okGXukXxOpJvGWXfBNB John L. Harrington HKWzHAFkpRFZMwq kQKcyrCNmFfqZfbgR tKSWgPotogS LPGuhaxkpNREtNG cavsmicfgOHwycNgnn John L. Harrington
---------------------- 2010-03-09 12:01:40.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE yCLgBQaHQYH ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = RDLBxWstJByibvuPaq ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE okGXukXxOpJvGWXfBNB ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE John L. Harrington ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE HKWzHAFkpRFZMwq ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE kQKcyrCNmFfqZfbgR ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE tKSWgPotogS ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = LPGuhaxkpNREtNG ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = cavsmicfgOHwycNgnn ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE John L. Harrington )) ---------------------- 2010-03-09 12:01:40.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE yCLgBQaHQYH ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = RDLBxWstJByibvuPaq ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE okGXukXxOpJvGWXfBNB ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE John L. Harrington ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE HKWzHAFkpRFZMwq ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE kQKcyrCNmFfqZfbgR ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE tKSWgPotogS ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = LPGuhaxkpNREtNG ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = cavsmicfgOHwycNgnn ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE John L. Harrington )) ---------------------- 2010-03-09 12:01:40.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE yCLgBQaHQYH ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = RDLBxWstJByibvuPaq ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE okGXukXxOpJvGWXfBNB ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE John L. Harrington ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE HKWzHAFkpRFZMwq ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE kQKcyrCNmFfqZfbgR ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE tKSWgPotogS ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = LPGuhaxkpNREtNG ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = cavsmicfgOHwycNgnn ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE John L. Harrington )) ---------------------- 2010-03-09 12:01:40.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE yCLgBQaHQYH ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = RDLBxWstJByibvuPaq ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE okGXukXxOpJvGWXfBNB ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE John L. Harrington ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE HKWzHAFkpRFZMwq ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE kQKcyrCNmFfqZfbgR ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE tKSWgPotogS ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = LPGuhaxkpNREtNG ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = cavsmicfgOHwycNgnn ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE John L. Harrington )) ---------------------- 2010-03-09 12:01:40.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-03-09 12:01:40.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'yCLgBQaHQYH' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'RDLBxWstJByibvuPaq' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'okGXukXxOpJvGWXfBNB' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'John L. Harrington' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'HKWzHAFkpRFZMwq' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'kQKcyrCNmFfqZfbgR' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'tKSWgPotogS' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'LPGuhaxkpNREtNG' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'cavsmicfgOHwycNgnn' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'John L. Harrington' ))' ---------------------- 2010-03-09 12:01:40.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "RDLBxWstJByibvuPaq" ---------------------- 2010-03-09 12:01:40.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-03-09 19:27:45.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-03-09 19:27:45.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString xsfrgGUZNevBFMGyy ilQouXwCwHBsrW HmGQgEtuySvTvSzyJGv John A. Shaughnessy MwIiLbHVjX MKrKegcHhuWjPsNCJ WZbsdpRhdzZJo lTtxiElqbjjgC uiIVNvqxdR John A. Shaughnessy
### ERROR LOG The Logging Results: ---------------------- 2010-03-09 18:27:45.000 Logging started. ---------------------- 2010-03-09 18:27:45.000 BioCASe protocol used. ---------------------- 2010-03-09 18:27:45.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-03-09 18:27:45.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-03-09 18:27:45.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-03-09 18:27:46.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-03-09 18:27:46.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-03-09 19:27:45.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n xsfrgGUZNevBFMGyy\n ilQouXwCwHBsrW\n HmGQgEtuySvTvSzyJGv\n John A. Shaughnessy\n MwIiLbHVjX\n MKrKegcHhuWjPsNCJ\n WZbsdpRhdzZJo\n lTtxiElqbjjgC\n uiIVNvqxdR\n John A. Shaughnessy\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-03-09 19:27:45.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n xsfrgGUZNevBFMGyy\n ilQouXwCwHBsrW\n HmGQgEtuySvTvSzyJGv\n John A. Shaughnessy\n MwIiLbHVjX\n MKrKegcHhuWjPsNCJ\n WZbsdpRhdzZJo\n lTtxiElqbjjgC\n uiIVNvqxdR\n John A. Shaughnessy\n\n\n\n \n
'} ---------------------- 2010-03-09 18:27:46.000 Found online debuglevel setting: 1 ---------------------- 2010-03-09 18:27:46.000 Setting debuglevel from 0 to 1 ---------------------- 2010-03-09 18:27:46.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-03-09 18:27:46.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-03-09 18:27:46.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-03-09 18:27:46.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-03-09 18:27:46.000 Pickled file is of latest revision. ---------------------- 2010-03-09 18:27:46.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-03-09 18:27:46.000 Original filter string parsed:
2.4.2 2010-03-09 19:27:45.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString xsfrgGUZNevBFMGyy ilQouXwCwHBsrW HmGQgEtuySvTvSzyJGv John A. Shaughnessy MwIiLbHVjX MKrKegcHhuWjPsNCJ WZbsdpRhdzZJo lTtxiElqbjjgC uiIVNvqxdR John A. Shaughnessy
---------------------- 2010-03-09 18:27:46.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE xsfrgGUZNevBFMGyy ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ilQouXwCwHBsrW ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE HmGQgEtuySvTvSzyJGv ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE John A. Shaughnessy ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE MwIiLbHVjX ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE MKrKegcHhuWjPsNCJ ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE WZbsdpRhdzZJo ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = lTtxiElqbjjgC ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = uiIVNvqxdR ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE John A. Shaughnessy )) ---------------------- 2010-03-09 18:27:46.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE xsfrgGUZNevBFMGyy ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ilQouXwCwHBsrW ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE HmGQgEtuySvTvSzyJGv ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE John A. Shaughnessy ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE MwIiLbHVjX ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE MKrKegcHhuWjPsNCJ ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE WZbsdpRhdzZJo ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = lTtxiElqbjjgC ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = uiIVNvqxdR ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE John A. Shaughnessy )) ---------------------- 2010-03-09 18:27:46.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE xsfrgGUZNevBFMGyy ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ilQouXwCwHBsrW ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE HmGQgEtuySvTvSzyJGv ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE John A. Shaughnessy ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE MwIiLbHVjX ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE MKrKegcHhuWjPsNCJ ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE WZbsdpRhdzZJo ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = lTtxiElqbjjgC ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = uiIVNvqxdR ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE John A. Shaughnessy )) ---------------------- 2010-03-09 18:27:46.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE xsfrgGUZNevBFMGyy ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ilQouXwCwHBsrW ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE HmGQgEtuySvTvSzyJGv ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE John A. Shaughnessy ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE MwIiLbHVjX ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE MKrKegcHhuWjPsNCJ ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE WZbsdpRhdzZJo ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = lTtxiElqbjjgC ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = uiIVNvqxdR ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE John A. Shaughnessy )) ---------------------- 2010-03-09 18:27:46.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-03-09 18:27:46.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'xsfrgGUZNevBFMGyy' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'ilQouXwCwHBsrW' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'HmGQgEtuySvTvSzyJGv' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'John A. Shaughnessy' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'MwIiLbHVjX' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'MKrKegcHhuWjPsNCJ' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'WZbsdpRhdzZJo' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'lTtxiElqbjjgC' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'uiIVNvqxdR' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'John A. Shaughnessy' ))' ---------------------- 2010-03-09 18:27:46.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "ilQouXwCwHBsrW" ---------------------- 2010-03-09 18:27:46.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-03-10 16:06:16.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- 209.45.106.154 to RMCA_Amphibians
2010-03-10T03:16:40+01:00209.45.106.154search
http://www.tdwg.org/schemas/abcd/1.2http://www.tdwg.org/schemas/abcd/1.2*bufo*false
### ERROR LOG The Logging Results: ---------------------- 2010-03-10 15:06:16.000 Logging started. ---------------------- 2010-03-10 15:06:16.000 BioCASe protocol used. ---------------------- 2010-03-10 15:06:16.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-03-10 15:06:16.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-03-10 15:06:16.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-03-10 15:06:16.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-03-10 15:06:16.000 All parameters found in the request: {'query': '
2010-03-10T03:16:40+01:00209.45.106.154search
http://www.tdwg.org/schemas/abcd/1.2http://www.tdwg.org/schemas/abcd/1.2*bufo*false
', 'request_string': '
2010-03-10T03:16:40+01:00209.45.106.154search
http://www.tdwg.org/schemas/abcd/1.2http://www.tdwg.org/schemas/abcd/1.2*bufo*false
'} ---------------------- 2010-03-10 15:06:16.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-03-10 15:06:16.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-03-10 15:06:16.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_1.20.xml' ---------------------- 2010-03-10 15:06:16.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-03-10 15:06:16.000 Pickled file is of latest revision. ---------------------- 2010-03-10 15:06:16.000 Original filter string parsed:
2010-03-10T03:16:40+01:00209.45.106.154search
http://www.tdwg.org/schemas/abcd/1.2http://www.tdwg.org/schemas/abcd/1.2*bufo*false
---------------------- 2010-03-10 15:06:16.000 Filter created: ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE *bufo* ) ---------------------- 2010-03-10 15:06:16.000 Compressed filter used: ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE *bufo* ) ---------------------- 2010-03-10 15:06:16.000 Record Identifier used: v_abcd2v06herpnet_trigger.pk(text) ---------------------- 2010-03-10 15:06:16.000 Use SQL LIMIT to limit the first result set of IDs only to the maximum of 10 records. ---------------------- 2010-03-10 15:06:16.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06herpnet_trigger"."pk" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") WHERE ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE '%bufo%' ) ORDER BY "v_abcd2v06herpnet_trigger"."pk" LIMIT 11' ---------------------- 2010-03-10 15:06:17.000 Hits: 11 ---------------------- 2010-03-10 15:06:17.000 Resulting Recordset: [[446899], [446900], [446901], [446902], [446925], [446926], [446927], [446928], [446929], [446930], [446931]] ---------------------- 2010-03-10 15:06:17.000 All RecIDs retrieved from DB: [446899, 446900, 446901, 446902, 446925, 446926, 446927, 446928, 446929, 446930, 446931] ---------------------- 2010-03-10 15:06:17.000 Executing SQL: 'SELECT "v_abcd2v06herpnet_trigger"."pk", "v_abcd2v06herpnet_trigger"."institutioncode", "v_abcd2v06herpnet_trigger"."collectioncode", "v_abcd2v06contactstechnical"."fullname", "v_abcd2v06contactstechnical"."mail", "datasetname"."statistics", "v_abcd2v06herpnet_trigger"."catalognumbertext", "v_abcd2v06herpnet_trigger"."datelastmodified", "v_abcd2v06manytomanyidentifications"."preferredflag", "v_abcd2v06higherrankbymanyidentifications"."rank", "v_abcd2v06higherrankbymanyidentifications"."taxonname", "v_abcd2v06manytomanyidentifications"."fullscientificnamestring", "v_abcd2v06manytomanyidentifications"."genus", "v_abcd2v06manytomanyidentifications"."species", "v_abcd2v06manytomanyidentifications"."subspecies", "v_abcd2v06manytomanyidentifications"."authorwithoutparenthesis", "v_abcd2v06manytomanyidentifications"."authorparenthesis", "v_abcd2v06herpnet_trigger"."identifiedby", "v_abcd2v06herpnet_trigger"."dateidentificationiso", "v_abcd2v06herpnet_trigger"."remarks", "v_abcd2v06herpnet_trigger"."identificationhistory", "v_abcd2v06herpnet_trigger"."ageclass", "v_abcd2v06herpnet_trigger"."sex", "v_abcd2v06herpnet_trigger"."preparations", "v_abcd2v06herpnet_trigger"."typestatus", "v_abcd2v06herpnet_trigger"."verbatimcollectingdate", "v_abcd2v06herpnet_trigger"."dateisobegin", "v_abcd2v06herpnet_trigger"."dateisoend", "v_abcd2v06herpnet_trigger"."collector", "v_abcd2v06herpnet_trigger"."locality", "v_abcd2v06herpnet_trigger"."country", "v_abcd2v06herpnet_trigger"."countryiso3166", "v_abcd2v06herpnet_trigger"."decimallongitude", "v_abcd2v06herpnet_trigger"."decimallatitude", "v_abcd2v06herpnet_trigger"."datum", "v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters", "v_abcd2v06herpnet_trigger"."georefmethod", "v_abcd2v06herpnet_trigger"."minimumelevationinmeters", "v_abcd2v06herpnet_trigger"."maximumelevationinmeters", "v_abcd2v06herpnet_trigger"."verbatimelevation", "v_abcd2v06herpnet_trigger"."fieldnotes", "v_abcd2v06herpnet_trigger"."individualcount", "v_abcd2v06herpnet_trigger"."pk", "v_abcd2v06contactstechnical"."id", "datasetname"."datasetname", "v_abcd2v06manytomanyidentifications"."pk", "v_abcd2v06higherrankbymanyidentifications"."pk" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE ("v_abcd2v06herpnet_trigger"."pk" IN ('446899', '446900', '446901', '446902', '446925', '446926', '446927', '446928', '446929', '446930')) ORDER BY "v_abcd2v06herpnet_trigger"."pk"' ---------------------- 2010-03-10 15:06:17.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 110, in doRequest (self.resultDOM, self.resultStatus) = operationObj.search(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 205, in search (recordset, recStatus) = self._getSearchResultList() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 344, in _getSearchResultList rs = self.execSelect( [recID] + self.CMFObject.allDBAttr, comparisonOperator('in', recID, IDs), orderByList=[recID]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 73, in execSelect return self.execSQL(sql, paras) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: missing FROM-clause entry for table "v_abcd2v06contactstechnical" ---------------------- 2010-03-10 15:06:17.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-03-12 01:43:17.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-03-12 01:00:09.50 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-03-12 00:43:17.000 Logging started. ---------------------- 2010-03-12 00:43:17.000 BioCASe protocol used. ---------------------- 2010-03-12 00:43:17.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-03-12 00:43:17.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-03-12 00:43:17.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-03-12 00:43:17.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-03-12 00:43:17.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-03-12 01:00:09.50\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-03-12 01:00:09.50\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-03-12 01:00:09.50\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-03-12 00:43:17.000 Found online debuglevel setting: 1 ---------------------- 2010-03-12 00:43:17.000 Setting debuglevel from 0 to 1 ---------------------- 2010-03-12 00:43:17.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-03-12 00:43:17.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-03-12 00:43:17.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-03-12 00:43:17.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-03-12 00:43:17.000 Pickled file is of latest revision. ---------------------- 2010-03-12 00:43:17.000 Original filter string parsed:
0.1 2010-03-12 01:00:09.50 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-03-12 00:43:17.000 Filter created: None ---------------------- 2010-03-12 00:43:17.000 Compressed filter used: None ---------------------- 2010-03-12 00:43:17.000 Counting total matched records with filter=None ---------------------- 2010-03-12 00:43:18.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-03-12 00:43:18.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-03-12 21:42:56.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2010-03-12 20:42:56.000 Logging started. ---------------------- 2010-03-12 20:42:56.000 BioCASe protocol used. ---------------------- 2010-03-12 20:42:56.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-03-12 20:42:56.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-03-12 20:42:56.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-03-12 20:42:56.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2010-03-12 20:42:56.000 Unknown request type! Default to capabilities. ---------------------- 2010-03-12 20:42:56.000 Destination hostname could not be determined ---------------------- 2010-03-12 20:42:56.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2010-03-12 20:42:56.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2010-03-12 20:42:56.000 Reset CMF convenience cache data hash. ---------------------- 2010-03-12 20:42:56.000 Loading CMF from the source XML file. ---------------------- 2010-03-12 20:42:56.000 CMF Version 2.1 detected. ---------------------- 2010-03-12 20:42:57.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2010-03-12 20:42:57.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2010-03-12 20:42:57.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-03-12 20:42:57.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-03-12 20:42:57.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-03-12 20:42:57.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-03-12 20:42:57.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-03-12 20:42:57.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2010-03-12 21:44:04.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2010-03-12 20:44:04.000 Logging started. ---------------------- 2010-03-12 20:44:05.000 BioCASe protocol used. ---------------------- 2010-03-12 20:44:05.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2010-03-12 20:44:05.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2010-03-12 20:44:05.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-03-12 20:44:05.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2010-03-12 20:44:05.000 Unknown request type! Default to capabilities. ---------------------- 2010-03-12 20:44:05.000 Destination hostname could not be determined ---------------------- 2010-03-12 20:44:05.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2010-03-12 20:44:05.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-03-12 20:44:05.000 Pickled file is of latest revision. ---------------------- 2010-03-12 20:44:05.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2010-03-12 20:44:05.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2010-03-12 20:44:05.000 Reset CMF convenience cache data hash. ---------------------- 2010-03-12 20:44:05.000 Loading CMF from the source XML file. ---------------------- 2010-03-12 20:44:05.000 CMF Version 2.1 detected. ---------------------- 2010-03-12 20:44:05.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2010-03-12 20:44:05.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2010-03-12 20:44:05.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-03-12 20:44:05.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-03-12 20:44:05.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-03-13 19:51:09.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-03-13 19:51:09.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString edcZcktN hSNvKIUDkDThVCH IDxxWpeHR John R. Iliff GpPIdezWPHqNrXcU BKKCcwsE fnMmcbAFxwmUZ ZqeQfrDfrUoZfNmwue iLiJFDulBNNorAS John R. Iliff
### ERROR LOG The Logging Results: ---------------------- 2010-03-13 18:51:09.000 Logging started. ---------------------- 2010-03-13 18:51:09.000 BioCASe protocol used. ---------------------- 2010-03-13 18:51:09.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-03-13 18:51:09.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-03-13 18:51:09.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-03-13 18:51:09.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-03-13 18:51:09.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-03-13 19:51:09.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n edcZcktN\n hSNvKIUDkDThVCH\n IDxxWpeHR\n John R. Iliff\n GpPIdezWPHqNrXcU\n BKKCcwsE\n fnMmcbAFxwmUZ\n ZqeQfrDfrUoZfNmwue\n iLiJFDulBNNorAS\n John R. Iliff\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-03-13 19:51:09.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n edcZcktN\n hSNvKIUDkDThVCH\n IDxxWpeHR\n John R. Iliff\n GpPIdezWPHqNrXcU\n BKKCcwsE\n fnMmcbAFxwmUZ\n ZqeQfrDfrUoZfNmwue\n iLiJFDulBNNorAS\n John R. Iliff\n\n\n\n \n
'} ---------------------- 2010-03-13 18:51:09.000 Found online debuglevel setting: 1 ---------------------- 2010-03-13 18:51:09.000 Setting debuglevel from 0 to 1 ---------------------- 2010-03-13 18:51:09.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-03-13 18:51:10.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-03-13 18:51:10.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-03-13 18:51:10.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-03-13 18:51:10.000 Pickled file is of latest revision. ---------------------- 2010-03-13 18:51:10.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-03-13 18:51:10.000 Original filter string parsed:
2.4.2 2010-03-13 19:51:09.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString edcZcktN hSNvKIUDkDThVCH IDxxWpeHR John R. Iliff GpPIdezWPHqNrXcU BKKCcwsE fnMmcbAFxwmUZ ZqeQfrDfrUoZfNmwue iLiJFDulBNNorAS John R. Iliff
---------------------- 2010-03-13 18:51:10.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE edcZcktN ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = hSNvKIUDkDThVCH ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE IDxxWpeHR ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE John R. Iliff ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE GpPIdezWPHqNrXcU ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE BKKCcwsE ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE fnMmcbAFxwmUZ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ZqeQfrDfrUoZfNmwue ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = iLiJFDulBNNorAS ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE John R. Iliff )) ---------------------- 2010-03-13 18:51:10.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE edcZcktN ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = hSNvKIUDkDThVCH ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE IDxxWpeHR ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE John R. Iliff ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE GpPIdezWPHqNrXcU ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE BKKCcwsE ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE fnMmcbAFxwmUZ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ZqeQfrDfrUoZfNmwue ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = iLiJFDulBNNorAS ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE John R. Iliff )) ---------------------- 2010-03-13 18:51:10.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE edcZcktN ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = hSNvKIUDkDThVCH ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE IDxxWpeHR ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE John R. Iliff ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE GpPIdezWPHqNrXcU ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE BKKCcwsE ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE fnMmcbAFxwmUZ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ZqeQfrDfrUoZfNmwue ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = iLiJFDulBNNorAS ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE John R. Iliff )) ---------------------- 2010-03-13 18:51:10.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE edcZcktN ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = hSNvKIUDkDThVCH ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE IDxxWpeHR ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE John R. Iliff ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE GpPIdezWPHqNrXcU ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE BKKCcwsE ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE fnMmcbAFxwmUZ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ZqeQfrDfrUoZfNmwue ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = iLiJFDulBNNorAS ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE John R. Iliff )) ---------------------- 2010-03-13 18:51:10.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-03-13 18:51:10.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'edcZcktN' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'hSNvKIUDkDThVCH' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'IDxxWpeHR' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'John R. Iliff' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'GpPIdezWPHqNrXcU' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'BKKCcwsE' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'fnMmcbAFxwmUZ' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'ZqeQfrDfrUoZfNmwue' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'iLiJFDulBNNorAS' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'John R. Iliff' ))' ---------------------- 2010-03-13 18:51:10.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "hSNvKIUDkDThVCH" ---------------------- 2010-03-13 18:51:10.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-03-14 05:08:00.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-03-14 05:07:59.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString iSbqoWmrNXeBgREVM bikFORKWaxfu zRruKRIiOdEbQWFLE Joshua J. Erickson kmHuzeMmnXJZIREkgiR McFGtHNlpetoIyHqa NywylCjxJoXOf DfFFoIRADRhpwbzguF FHiToapGrZAVCjTV Joshua J. Erickson
### ERROR LOG The Logging Results: ---------------------- 2010-03-14 04:08:00.000 Logging started. ---------------------- 2010-03-14 04:08:00.000 BioCASe protocol used. ---------------------- 2010-03-14 04:08:00.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-03-14 04:08:00.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-03-14 04:08:00.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-03-14 04:08:00.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-03-14 04:08:00.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-03-14 05:07:59.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n iSbqoWmrNXeBgREVM\n bikFORKWaxfu\n zRruKRIiOdEbQWFLE\n Joshua J. Erickson\n kmHuzeMmnXJZIREkgiR\n McFGtHNlpetoIyHqa\n NywylCjxJoXOf\n DfFFoIRADRhpwbzguF\n FHiToapGrZAVCjTV\n Joshua J. Erickson\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-03-14 05:07:59.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n iSbqoWmrNXeBgREVM\n bikFORKWaxfu\n zRruKRIiOdEbQWFLE\n Joshua J. Erickson\n kmHuzeMmnXJZIREkgiR\n McFGtHNlpetoIyHqa\n NywylCjxJoXOf\n DfFFoIRADRhpwbzguF\n FHiToapGrZAVCjTV\n Joshua J. Erickson\n\n\n\n \n
'} ---------------------- 2010-03-14 04:08:00.000 Found online debuglevel setting: 1 ---------------------- 2010-03-14 04:08:00.000 Setting debuglevel from 0 to 1 ---------------------- 2010-03-14 04:08:00.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-03-14 04:08:00.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-03-14 04:08:00.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-03-14 04:08:00.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-03-14 04:08:01.000 Pickled file is of latest revision. ---------------------- 2010-03-14 04:08:01.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-03-14 04:08:01.000 Original filter string parsed:
2.4.2 2010-03-14 05:07:59.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString iSbqoWmrNXeBgREVM bikFORKWaxfu zRruKRIiOdEbQWFLE Joshua J. Erickson kmHuzeMmnXJZIREkgiR McFGtHNlpetoIyHqa NywylCjxJoXOf DfFFoIRADRhpwbzguF FHiToapGrZAVCjTV Joshua J. Erickson
---------------------- 2010-03-14 04:08:01.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE iSbqoWmrNXeBgREVM ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = bikFORKWaxfu ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE zRruKRIiOdEbQWFLE ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Joshua J. Erickson ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE kmHuzeMmnXJZIREkgiR ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE McFGtHNlpetoIyHqa ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE NywylCjxJoXOf ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = DfFFoIRADRhpwbzguF ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = FHiToapGrZAVCjTV ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Joshua J. Erickson )) ---------------------- 2010-03-14 04:08:01.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE iSbqoWmrNXeBgREVM ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = bikFORKWaxfu ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE zRruKRIiOdEbQWFLE ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Joshua J. Erickson ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE kmHuzeMmnXJZIREkgiR ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE McFGtHNlpetoIyHqa ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE NywylCjxJoXOf ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = DfFFoIRADRhpwbzguF ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = FHiToapGrZAVCjTV ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Joshua J. Erickson )) ---------------------- 2010-03-14 04:08:01.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE iSbqoWmrNXeBgREVM ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = bikFORKWaxfu ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE zRruKRIiOdEbQWFLE ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Joshua J. Erickson ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE kmHuzeMmnXJZIREkgiR ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE McFGtHNlpetoIyHqa ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE NywylCjxJoXOf ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = DfFFoIRADRhpwbzguF ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = FHiToapGrZAVCjTV ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Joshua J. Erickson )) ---------------------- 2010-03-14 04:08:01.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE iSbqoWmrNXeBgREVM ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = bikFORKWaxfu ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE zRruKRIiOdEbQWFLE ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Joshua J. Erickson ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE kmHuzeMmnXJZIREkgiR ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE McFGtHNlpetoIyHqa ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE NywylCjxJoXOf ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = DfFFoIRADRhpwbzguF ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = FHiToapGrZAVCjTV ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Joshua J. Erickson )) ---------------------- 2010-03-14 04:08:01.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-03-14 04:08:01.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'iSbqoWmrNXeBgREVM' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'bikFORKWaxfu' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'zRruKRIiOdEbQWFLE' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Joshua J. Erickson' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'kmHuzeMmnXJZIREkgiR' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'McFGtHNlpetoIyHqa' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'NywylCjxJoXOf' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'DfFFoIRADRhpwbzguF' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'FHiToapGrZAVCjTV' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Joshua J. Erickson' ))' ---------------------- 2010-03-14 04:08:01.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "bikFORKWaxfu" ---------------------- 2010-03-14 04:08:01.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-03-14 15:04:07.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-03-14 15:04:06.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString ZfhwVvrjrgUqXgYUn AaAKFJwMAFWQmncJ fqtlfxrFpRhzCEIqSU Frank W. Mercado svxzwPZh wDUxlwjOonz wJwZBtYwUvpGmViQt uuGkYSKAS MWlfUmYOrOWJzt Frank W. Mercado
### ERROR LOG The Logging Results: ---------------------- 2010-03-14 14:04:07.000 Logging started. ---------------------- 2010-03-14 14:04:07.000 BioCASe protocol used. ---------------------- 2010-03-14 14:04:07.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-03-14 14:04:07.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-03-14 14:04:07.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-03-14 14:04:07.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-03-14 14:04:07.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-03-14 15:04:06.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n ZfhwVvrjrgUqXgYUn\n AaAKFJwMAFWQmncJ\n fqtlfxrFpRhzCEIqSU\n Frank W. Mercado\n svxzwPZh\n wDUxlwjOonz\n wJwZBtYwUvpGmViQt\n uuGkYSKAS\n MWlfUmYOrOWJzt\n Frank W. Mercado\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-03-14 15:04:06.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n ZfhwVvrjrgUqXgYUn\n AaAKFJwMAFWQmncJ\n fqtlfxrFpRhzCEIqSU\n Frank W. Mercado\n svxzwPZh\n wDUxlwjOonz\n wJwZBtYwUvpGmViQt\n uuGkYSKAS\n MWlfUmYOrOWJzt\n Frank W. Mercado\n\n\n\n \n
'} ---------------------- 2010-03-14 14:04:07.000 Found online debuglevel setting: 1 ---------------------- 2010-03-14 14:04:07.000 Setting debuglevel from 0 to 1 ---------------------- 2010-03-14 14:04:07.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-03-14 14:04:07.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-03-14 14:04:07.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-03-14 14:04:07.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-03-14 14:04:07.000 Pickled file is of latest revision. ---------------------- 2010-03-14 14:04:07.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-03-14 14:04:08.000 Original filter string parsed:
2.4.2 2010-03-14 15:04:06.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString ZfhwVvrjrgUqXgYUn AaAKFJwMAFWQmncJ fqtlfxrFpRhzCEIqSU Frank W. Mercado svxzwPZh wDUxlwjOonz wJwZBtYwUvpGmViQt uuGkYSKAS MWlfUmYOrOWJzt Frank W. Mercado
---------------------- 2010-03-14 14:04:08.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE ZfhwVvrjrgUqXgYUn ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = AaAKFJwMAFWQmncJ ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE fqtlfxrFpRhzCEIqSU ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Frank W. Mercado ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE svxzwPZh ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE wDUxlwjOonz ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE wJwZBtYwUvpGmViQt ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = uuGkYSKAS ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = MWlfUmYOrOWJzt ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Frank W. Mercado )) ---------------------- 2010-03-14 14:04:08.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE ZfhwVvrjrgUqXgYUn ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = AaAKFJwMAFWQmncJ ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE fqtlfxrFpRhzCEIqSU ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Frank W. Mercado ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE svxzwPZh ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE wDUxlwjOonz ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE wJwZBtYwUvpGmViQt ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = uuGkYSKAS ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = MWlfUmYOrOWJzt ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Frank W. Mercado )) ---------------------- 2010-03-14 14:04:08.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE ZfhwVvrjrgUqXgYUn ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = AaAKFJwMAFWQmncJ ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE fqtlfxrFpRhzCEIqSU ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Frank W. Mercado ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE svxzwPZh ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE wDUxlwjOonz ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE wJwZBtYwUvpGmViQt ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = uuGkYSKAS ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = MWlfUmYOrOWJzt ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Frank W. Mercado )) ---------------------- 2010-03-14 14:04:08.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE ZfhwVvrjrgUqXgYUn ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = AaAKFJwMAFWQmncJ ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE fqtlfxrFpRhzCEIqSU ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Frank W. Mercado ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE svxzwPZh ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE wDUxlwjOonz ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE wJwZBtYwUvpGmViQt ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = uuGkYSKAS ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = MWlfUmYOrOWJzt ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Frank W. Mercado )) ---------------------- 2010-03-14 14:04:08.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-03-14 14:04:08.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'ZfhwVvrjrgUqXgYUn' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'AaAKFJwMAFWQmncJ' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'fqtlfxrFpRhzCEIqSU' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Frank W. Mercado' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'svxzwPZh' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'wDUxlwjOonz' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'wJwZBtYwUvpGmViQt' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'uuGkYSKAS' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'MWlfUmYOrOWJzt' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Frank W. Mercado' ))' ---------------------- 2010-03-14 14:04:08.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "AaAKFJwMAFWQmncJ" ---------------------- 2010-03-14 14:04:08.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-03-15 01:42:22.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-03-15 01:42:21.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString mdMzlbzYTKF dDbaBaDZKERyeSpJf FwoHYGobhbwuHoLM Darren G. Henry wxdBkGstIlfM efuiaYRqg aIQQolPJXXwl iBetKeyDQzs BOVbXQSwCSkAlfxdK Darren G. Henry
### ERROR LOG The Logging Results: ---------------------- 2010-03-15 00:42:22.000 Logging started. ---------------------- 2010-03-15 00:42:22.000 BioCASe protocol used. ---------------------- 2010-03-15 00:42:22.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-03-15 00:42:22.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-03-15 00:42:22.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-03-15 00:42:22.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-03-15 00:42:22.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-03-15 01:42:21.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n mdMzlbzYTKF\n dDbaBaDZKERyeSpJf\n FwoHYGobhbwuHoLM\n Darren G. Henry\n wxdBkGstIlfM\n efuiaYRqg\n aIQQolPJXXwl\n iBetKeyDQzs\n BOVbXQSwCSkAlfxdK\n Darren G. Henry\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-03-15 01:42:21.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n mdMzlbzYTKF\n dDbaBaDZKERyeSpJf\n FwoHYGobhbwuHoLM\n Darren G. Henry\n wxdBkGstIlfM\n efuiaYRqg\n aIQQolPJXXwl\n iBetKeyDQzs\n BOVbXQSwCSkAlfxdK\n Darren G. Henry\n\n\n\n \n
'} ---------------------- 2010-03-15 00:42:22.000 Found online debuglevel setting: 1 ---------------------- 2010-03-15 00:42:22.000 Setting debuglevel from 0 to 1 ---------------------- 2010-03-15 00:42:22.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-03-15 00:42:22.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-03-15 00:42:22.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-03-15 00:42:22.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-03-15 00:42:23.000 Pickled file is of latest revision. ---------------------- 2010-03-15 00:42:23.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-03-15 00:42:23.000 Original filter string parsed:
2.4.2 2010-03-15 01:42:21.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString mdMzlbzYTKF dDbaBaDZKERyeSpJf FwoHYGobhbwuHoLM Darren G. Henry wxdBkGstIlfM efuiaYRqg aIQQolPJXXwl iBetKeyDQzs BOVbXQSwCSkAlfxdK Darren G. Henry
---------------------- 2010-03-15 00:42:23.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE mdMzlbzYTKF ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = dDbaBaDZKERyeSpJf ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE FwoHYGobhbwuHoLM ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Darren G. Henry ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE wxdBkGstIlfM ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE efuiaYRqg ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE aIQQolPJXXwl ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = iBetKeyDQzs ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = BOVbXQSwCSkAlfxdK ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Darren G. Henry )) ---------------------- 2010-03-15 00:42:23.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE mdMzlbzYTKF ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = dDbaBaDZKERyeSpJf ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE FwoHYGobhbwuHoLM ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Darren G. Henry ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE wxdBkGstIlfM ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE efuiaYRqg ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE aIQQolPJXXwl ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = iBetKeyDQzs ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = BOVbXQSwCSkAlfxdK ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Darren G. Henry )) ---------------------- 2010-03-15 00:42:23.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE mdMzlbzYTKF ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = dDbaBaDZKERyeSpJf ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE FwoHYGobhbwuHoLM ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Darren G. Henry ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE wxdBkGstIlfM ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE efuiaYRqg ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE aIQQolPJXXwl ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = iBetKeyDQzs ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = BOVbXQSwCSkAlfxdK ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Darren G. Henry )) ---------------------- 2010-03-15 00:42:23.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE mdMzlbzYTKF ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = dDbaBaDZKERyeSpJf ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE FwoHYGobhbwuHoLM ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Darren G. Henry ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE wxdBkGstIlfM ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE efuiaYRqg ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE aIQQolPJXXwl ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = iBetKeyDQzs ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = BOVbXQSwCSkAlfxdK ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Darren G. Henry )) ---------------------- 2010-03-15 00:42:23.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-03-15 00:42:23.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'mdMzlbzYTKF' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'dDbaBaDZKERyeSpJf' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'FwoHYGobhbwuHoLM' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Darren G. Henry' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'wxdBkGstIlfM' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'efuiaYRqg' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'aIQQolPJXXwl' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'iBetKeyDQzs' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'BOVbXQSwCSkAlfxdK' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Darren G. Henry' ))' ---------------------- 2010-03-15 00:42:23.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "dDbaBaDZKERyeSpJf" ---------------------- 2010-03-15 00:42:23.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-03-15 11:43:42.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-03-15 11:43:41.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString EqzMmPlW KuRnlsJniIPpVCjvWo qieglivtpdGj Lester V. Travers WhpqoMAgGBsE XXTqIDMofpUpkNqLL xNutpfnuBtOzEyn wbuzZorDlDtKk kTZzYbEW Lester V. Travers
### ERROR LOG The Logging Results: ---------------------- 2010-03-15 10:43:42.000 Logging started. ---------------------- 2010-03-15 10:43:42.000 BioCASe protocol used. ---------------------- 2010-03-15 10:43:42.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-03-15 10:43:42.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-03-15 10:43:42.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-03-15 10:43:42.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-03-15 10:43:42.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-03-15 11:43:41.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n EqzMmPlW\n KuRnlsJniIPpVCjvWo\n qieglivtpdGj\n Lester V. Travers\n WhpqoMAgGBsE\n XXTqIDMofpUpkNqLL\n xNutpfnuBtOzEyn\n wbuzZorDlDtKk\n kTZzYbEW\n Lester V. Travers\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-03-15 11:43:41.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n EqzMmPlW\n KuRnlsJniIPpVCjvWo\n qieglivtpdGj\n Lester V. Travers\n WhpqoMAgGBsE\n XXTqIDMofpUpkNqLL\n xNutpfnuBtOzEyn\n wbuzZorDlDtKk\n kTZzYbEW\n Lester V. Travers\n\n\n\n \n
'} ---------------------- 2010-03-15 10:43:42.000 Found online debuglevel setting: 1 ---------------------- 2010-03-15 10:43:42.000 Setting debuglevel from 0 to 1 ---------------------- 2010-03-15 10:43:42.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-03-15 10:43:42.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-03-15 10:43:42.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-03-15 10:43:42.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-03-15 10:43:42.000 Pickled file is of latest revision. ---------------------- 2010-03-15 10:43:42.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-03-15 10:43:42.000 Original filter string parsed:
2.4.2 2010-03-15 11:43:41.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString EqzMmPlW KuRnlsJniIPpVCjvWo qieglivtpdGj Lester V. Travers WhpqoMAgGBsE XXTqIDMofpUpkNqLL xNutpfnuBtOzEyn wbuzZorDlDtKk kTZzYbEW Lester V. Travers
---------------------- 2010-03-15 10:43:42.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE EqzMmPlW ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = KuRnlsJniIPpVCjvWo ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE qieglivtpdGj ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Lester V. Travers ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE WhpqoMAgGBsE ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE XXTqIDMofpUpkNqLL ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE xNutpfnuBtOzEyn ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = wbuzZorDlDtKk ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = kTZzYbEW ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Lester V. Travers )) ---------------------- 2010-03-15 10:43:42.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE EqzMmPlW ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = KuRnlsJniIPpVCjvWo ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE qieglivtpdGj ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Lester V. Travers ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE WhpqoMAgGBsE ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE XXTqIDMofpUpkNqLL ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE xNutpfnuBtOzEyn ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = wbuzZorDlDtKk ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = kTZzYbEW ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Lester V. Travers )) ---------------------- 2010-03-15 10:43:42.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE EqzMmPlW ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = KuRnlsJniIPpVCjvWo ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE qieglivtpdGj ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Lester V. Travers ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE WhpqoMAgGBsE ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE XXTqIDMofpUpkNqLL ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE xNutpfnuBtOzEyn ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = wbuzZorDlDtKk ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = kTZzYbEW ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Lester V. Travers )) ---------------------- 2010-03-15 10:43:42.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE EqzMmPlW ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = KuRnlsJniIPpVCjvWo ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE qieglivtpdGj ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Lester V. Travers ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE WhpqoMAgGBsE ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE XXTqIDMofpUpkNqLL ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE xNutpfnuBtOzEyn ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = wbuzZorDlDtKk ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = kTZzYbEW ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Lester V. Travers )) ---------------------- 2010-03-15 10:43:42.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-03-15 10:43:42.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'EqzMmPlW' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'KuRnlsJniIPpVCjvWo' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'qieglivtpdGj' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Lester V. Travers' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'WhpqoMAgGBsE' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'XXTqIDMofpUpkNqLL' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'xNutpfnuBtOzEyn' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'wbuzZorDlDtKk' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'kTZzYbEW' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Lester V. Travers' ))' ---------------------- 2010-03-15 10:43:42.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "KuRnlsJniIPpVCjvWo" ---------------------- 2010-03-15 10:43:43.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-03-16 01:30:14.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2010-03-16 00:30:14.000 Logging started. ---------------------- 2010-03-16 00:30:14.000 BioCASe protocol used. ---------------------- 2010-03-16 00:30:14.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-03-16 00:30:14.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-03-16 00:30:14.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-03-16 00:30:14.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2010-03-16 00:30:14.000 Unknown request type! Default to capabilities. ---------------------- 2010-03-16 00:30:14.000 Destination hostname could not be determined ---------------------- 2010-03-16 00:30:14.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2010-03-16 00:30:14.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2010-03-16 00:30:14.000 Reset CMF convenience cache data hash. ---------------------- 2010-03-16 00:30:14.000 Loading CMF from the source XML file. ---------------------- 2010-03-16 00:30:14.000 CMF Version 2.1 detected. ---------------------- 2010-03-16 00:30:15.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2010-03-16 00:30:15.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2010-03-16 00:30:15.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-03-16 00:30:15.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-03-16 00:30:15.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-03-16 00:30:15.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-03-16 00:30:15.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-03-16 00:30:15.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-03-16 13:56:14.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-03-16 13:56:14.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString AHMANIHzcIqHfc vscyomlg@twiuisjl.com ZoQhHIoDmvXTpAk cheap female sexual oil Europe cheap female sexual oil CtORMS Aloha! and <a href="http://duprost-fda.socialgo.com">cheap duprost</a> and http://duprost-fda.socialgo.com cheap duprost and :-[[ and vscyomlg@twiuisjl.com vscyomlg@twiuisjl.com cheap female sexual oil
### ERROR LOG The Logging Results: ---------------------- 2010-03-16 12:56:14.000 Logging started. ---------------------- 2010-03-16 12:56:14.000 BioCASe protocol used. ---------------------- 2010-03-16 12:56:14.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-03-16 12:56:14.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-03-16 12:56:14.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-03-16 12:56:15.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-03-16 12:56:15.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-03-16 13:56:14.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n AHMANIHzcIqHfc\n vscyomlg@twiuisjl.com\n ZoQhHIoDmvXTpAk\n cheap female sexual oil\n Europe\n cheap female sexual oil\n CtORMS Aloha! and <a href="http://duprost-fda.socialgo.com">cheap duprost</a> and http://duprost-fda.socialgo.com cheap duprost and :-[[ and \n vscyomlg@twiuisjl.com\n vscyomlg@twiuisjl.com\n cheap female sexual oil\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-03-16 13:56:14.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n AHMANIHzcIqHfc\n vscyomlg@twiuisjl.com\n ZoQhHIoDmvXTpAk\n cheap female sexual oil\n Europe\n cheap female sexual oil\n CtORMS Aloha! and <a href="http://duprost-fda.socialgo.com">cheap duprost</a> and http://duprost-fda.socialgo.com cheap duprost and :-[[ and \n vscyomlg@twiuisjl.com\n vscyomlg@twiuisjl.com\n cheap female sexual oil\n\n\n\n \n
'} ---------------------- 2010-03-16 12:56:15.000 Found online debuglevel setting: 1 ---------------------- 2010-03-16 12:56:15.000 Setting debuglevel from 0 to 1 ---------------------- 2010-03-16 12:56:15.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-03-16 12:56:15.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-03-16 12:56:15.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-03-16 12:56:15.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-03-16 12:56:15.000 Pickled file is of latest revision. ---------------------- 2010-03-16 12:56:15.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-03-16 12:56:15.000 Original filter string parsed:
2.4.2 2010-03-16 13:56:14.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString AHMANIHzcIqHfc vscyomlg@twiuisjl.com ZoQhHIoDmvXTpAk cheap female sexual oil Europe cheap female sexual oil CtORMS Aloha! and <a href="http://duprost-fda.socialgo.com">cheap duprost</a> and http://duprost-fda.socialgo.com cheap duprost and :-[[ and vscyomlg@twiuisjl.com vscyomlg@twiuisjl.com cheap female sexual oil
---------------------- 2010-03-16 12:56:15.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE AHMANIHzcIqHfc ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = vscyomlg@twiuisjl.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE ZoQhHIoDmvXTpAk ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE cheap female sexual oil ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE Europe ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE cheap female sexual oil ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE CtORMS Aloha! and cheap duprost and http://duprost-fda.socialgo.com cheap duprost and :-[[ and ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = vscyomlg@twiuisjl.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = vscyomlg@twiuisjl.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE cheap female sexual oil )) ---------------------- 2010-03-16 12:56:15.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE AHMANIHzcIqHfc ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = vscyomlg@twiuisjl.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE ZoQhHIoDmvXTpAk ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE cheap female sexual oil ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE Europe ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE cheap female sexual oil ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE CtORMS Aloha! and cheap duprost and http://duprost-fda.socialgo.com cheap duprost and :-[[ and ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = vscyomlg@twiuisjl.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = vscyomlg@twiuisjl.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE cheap female sexual oil )) ---------------------- 2010-03-16 12:56:15.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE AHMANIHzcIqHfc ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = vscyomlg@twiuisjl.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE ZoQhHIoDmvXTpAk ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE cheap female sexual oil ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE Europe ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE cheap female sexual oil ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE CtORMS Aloha! and cheap duprost and http://duprost-fda.socialgo.com cheap duprost and :-[[ and ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = vscyomlg@twiuisjl.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = vscyomlg@twiuisjl.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE cheap female sexual oil )) ---------------------- 2010-03-16 12:56:15.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE AHMANIHzcIqHfc ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = vscyomlg@twiuisjl.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE ZoQhHIoDmvXTpAk ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE cheap female sexual oil ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE Europe ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE cheap female sexual oil ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE CtORMS Aloha! and cheap duprost and http://duprost-fda.socialgo.com cheap duprost and :-[[ and ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = vscyomlg@twiuisjl.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = vscyomlg@twiuisjl.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE cheap female sexual oil )) ---------------------- 2010-03-16 12:56:15.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-03-16 12:56:15.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'AHMANIHzcIqHfc' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'vscyomlg@twiuisjl.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'ZoQhHIoDmvXTpAk' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'cheap female sexual oil' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'Europe' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'cheap female sexual oil' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'CtORMS Aloha! and cheap duprost and http://duprost-fda.socialgo.com cheap duprost and :-[[ and' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'vscyomlg@twiuisjl.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'vscyomlg@twiuisjl.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'cheap female sexual oil' ))' ---------------------- 2010-03-16 12:56:15.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "vscyomlg@twiuisjl.com" ---------------------- 2010-03-16 12:56:15.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-03-16 21:02:01.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-03-16 21:02:00.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString vFWOReOMSXXo xYZMDYelhm GkwrjoEyOBjPauHS buy clomid oqnAXkpBFyar wbzuJhYyOqTHRPrLpq sLayVlhfqW HesKmSVnckhhnQk MZfQABuAZlobhUBja buy clomid
### ERROR LOG The Logging Results: ---------------------- 2010-03-16 20:02:01.000 Logging started. ---------------------- 2010-03-16 20:02:01.000 BioCASe protocol used. ---------------------- 2010-03-16 20:02:01.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-03-16 20:02:01.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-03-16 20:02:01.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-03-16 20:02:01.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-03-16 20:02:01.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-03-16 21:02:00.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n vFWOReOMSXXo\n xYZMDYelhm\n GkwrjoEyOBjPauHS\n buy clomid\n oqnAXkpBFyar\n wbzuJhYyOqTHRPrLpq\n sLayVlhfqW\n HesKmSVnckhhnQk\n MZfQABuAZlobhUBja\n buy clomid\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-03-16 21:02:00.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n vFWOReOMSXXo\n xYZMDYelhm\n GkwrjoEyOBjPauHS\n buy clomid\n oqnAXkpBFyar\n wbzuJhYyOqTHRPrLpq\n sLayVlhfqW\n HesKmSVnckhhnQk\n MZfQABuAZlobhUBja\n buy clomid\n\n\n\n \n
'} ---------------------- 2010-03-16 20:02:01.000 Found online debuglevel setting: 1 ---------------------- 2010-03-16 20:02:01.000 Setting debuglevel from 0 to 1 ---------------------- 2010-03-16 20:02:01.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-03-16 20:02:01.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-03-16 20:02:01.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-03-16 20:02:01.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-03-16 20:02:02.000 Pickled file is of latest revision. ---------------------- 2010-03-16 20:02:02.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-03-16 20:02:02.000 Original filter string parsed:
2.4.2 2010-03-16 21:02:00.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString vFWOReOMSXXo xYZMDYelhm GkwrjoEyOBjPauHS buy clomid oqnAXkpBFyar wbzuJhYyOqTHRPrLpq sLayVlhfqW HesKmSVnckhhnQk MZfQABuAZlobhUBja buy clomid
---------------------- 2010-03-16 20:02:02.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE vFWOReOMSXXo ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = xYZMDYelhm ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE GkwrjoEyOBjPauHS ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE buy clomid ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE oqnAXkpBFyar ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE wbzuJhYyOqTHRPrLpq ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE sLayVlhfqW ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = HesKmSVnckhhnQk ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = MZfQABuAZlobhUBja ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE buy clomid )) ---------------------- 2010-03-16 20:02:02.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE vFWOReOMSXXo ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = xYZMDYelhm ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE GkwrjoEyOBjPauHS ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE buy clomid ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE oqnAXkpBFyar ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE wbzuJhYyOqTHRPrLpq ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE sLayVlhfqW ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = HesKmSVnckhhnQk ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = MZfQABuAZlobhUBja ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE buy clomid )) ---------------------- 2010-03-16 20:02:02.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE vFWOReOMSXXo ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = xYZMDYelhm ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE GkwrjoEyOBjPauHS ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE buy clomid ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE oqnAXkpBFyar ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE wbzuJhYyOqTHRPrLpq ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE sLayVlhfqW ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = HesKmSVnckhhnQk ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = MZfQABuAZlobhUBja ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE buy clomid )) ---------------------- 2010-03-16 20:02:02.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE vFWOReOMSXXo ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = xYZMDYelhm ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE GkwrjoEyOBjPauHS ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE buy clomid ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE oqnAXkpBFyar ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE wbzuJhYyOqTHRPrLpq ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE sLayVlhfqW ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = HesKmSVnckhhnQk ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = MZfQABuAZlobhUBja ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE buy clomid )) ---------------------- 2010-03-16 20:02:02.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-03-16 20:02:02.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'vFWOReOMSXXo' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'xYZMDYelhm' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'GkwrjoEyOBjPauHS' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'buy clomid' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'oqnAXkpBFyar' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'wbzuJhYyOqTHRPrLpq' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'sLayVlhfqW' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'HesKmSVnckhhnQk' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'MZfQABuAZlobhUBja' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'buy clomid' ))' ---------------------- 2010-03-16 20:02:02.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "xYZMDYelhm" ---------------------- 2010-03-16 20:02:02.000 Setting debuglevel from 1 to 3 **************************************** PONTAURUS **************************************** ### ERROR TIME 2010-03-17 09:06:15.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to pontaurus MyTaPJ vlgfnxvhhgxo, [url=http://jmaatbcyznrl.com/]jmaatbcyznrl[/url], [link=http://ycfhpkdmdwpk.com/]ycfhpkdmdwpk[/link], http://opwlmosrompl.com/ ### ERROR LOG The Logging Results: ---------------------- 2010-03-17 08:06:15.000 Logging started. ---------------------- 2010-03-17 08:06:15.000 BioCASe protocol used. ---------------------- 2010-03-17 08:06:15.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['pontaurus']} ---------------------- 2010-03-17 08:06:15.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/pontaurus/provider_setup_file.xml ---------------------- 2010-03-17 08:06:15.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-03-17 08:06:15.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-03-17 08:06:15.000 All parameters found in the request: {'debug': '1', 'query': 'MyTaPJ vlgfnxvhhgxo, [url=http://jmaatbcyznrl.com/]jmaatbcyznrl[/url], [link=http://ycfhpkdmdwpk.com/]ycfhpkdmdwpk[/link], http://opwlmosrompl.com/', 'request_string': 'MyTaPJ vlgfnxvhhgxo, [url=http://jmaatbcyznrl.com/]jmaatbcyznrl[/url], [link=http://ycfhpkdmdwpk.com/]ycfhpkdmdwpk[/link], http://opwlmosrompl.com/'} ---------------------- 2010-03-17 08:06:15.000 Found online debuglevel setting: 1 ---------------------- 2010-03-17 08:06:15.000 Setting debuglevel from 0 to 1 ---------------------- 2010-03-17 08:06:15.000 REQ_PARSING_ERROR: The request could not be parsed. Please check if it is a valid XML document. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 87, in parseRequestString parseString(RequestString, handler) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/__init__.py", line 47, in parseString parser.parse(inpsrc) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 109, in parse xmlreader.IncrementalParser.parse(self, source) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/xmlreader.py", line 123, in parse self.feed(buffer) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 220, in feed self._err_handler.fatalError(exc) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/handler.py", line 38, in fatalError raise exception SAXParseException: :1:0: syntax error ---------------------- 2010-03-17 08:06:15.000 Serious PyWrapper instance crash Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/www/pywrapper.cgi", line 55, in ? pywInstance.setRequest() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 136, in setRequest self.protocolObj.setRequest(args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 37, in setRequest ProtocolBaseClass.setRequest(self, RequestClass, args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/base_protocol.py", line 41, in setRequest self.requestObj.setRequest(args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 48, in setRequest self.parseRequestString(args['request_string']) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 89, in parseRequestString raise RequestParseError(self.logObj) RequestParseError: ---------------------- 2010-03-17 08:06:15.000 Unknown Request-type : None ---------------------- 2010-03-17 08:06:15.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS_INTERNALQUERY **************************************** ### ERROR TIME 2010-03-17 10:11:23.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians_InternalQuery pjuap6 gymfyzjnzhml, [url=http://mbzjcrqjvmlr.com/]mbzjcrqjvmlr[/url], [link=http://iehjzmdvzjim.com/]iehjzmdvzjim[/link], http://ubyazovafzkz.com/ ### ERROR LOG The Logging Results: ---------------------- 2010-03-17 09:11:23.000 Logging started. ---------------------- 2010-03-17 09:11:23.000 BioCASe protocol used. ---------------------- 2010-03-17 09:11:23.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians_InternalQuery']} ---------------------- 2010-03-17 09:11:23.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians_InternalQuery/provider_setup_file.xml ---------------------- 2010-03-17 09:11:23.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-03-17 09:11:23.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-03-17 09:11:23.000 All parameters found in the request: {'debug': '1', 'query': 'pjuap6 gymfyzjnzhml, [url=http://mbzjcrqjvmlr.com/]mbzjcrqjvmlr[/url], [link=http://iehjzmdvzjim.com/]iehjzmdvzjim[/link], http://ubyazovafzkz.com/', 'request_string': 'pjuap6 gymfyzjnzhml, [url=http://mbzjcrqjvmlr.com/]mbzjcrqjvmlr[/url], [link=http://iehjzmdvzjim.com/]iehjzmdvzjim[/link], http://ubyazovafzkz.com/'} ---------------------- 2010-03-17 09:11:23.000 Found online debuglevel setting: 1 ---------------------- 2010-03-17 09:11:23.000 Setting debuglevel from 0 to 1 ---------------------- 2010-03-17 09:11:23.000 REQ_PARSING_ERROR: The request could not be parsed. Please check if it is a valid XML document. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 87, in parseRequestString parseString(RequestString, handler) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/__init__.py", line 47, in parseString parser.parse(inpsrc) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 109, in parse xmlreader.IncrementalParser.parse(self, source) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/xmlreader.py", line 123, in parse self.feed(buffer) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 220, in feed self._err_handler.fatalError(exc) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/handler.py", line 38, in fatalError raise exception SAXParseException: :1:0: syntax error ---------------------- 2010-03-17 09:11:23.000 Serious PyWrapper instance crash Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/www/pywrapper.cgi", line 55, in ? pywInstance.setRequest() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 136, in setRequest self.protocolObj.setRequest(args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 37, in setRequest ProtocolBaseClass.setRequest(self, RequestClass, args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/base_protocol.py", line 41, in setRequest self.requestObj.setRequest(args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 48, in setRequest self.parseRequestString(args['request_string']) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 89, in parseRequestString raise RequestParseError(self.logObj) RequestParseError: ---------------------- 2010-03-17 09:11:23.000 Unknown Request-type : None ---------------------- 2010-03-17 09:11:23.000 Setting debuglevel from 1 to 3 **************************************** DEMOBIOCASE **************************************** ### ERROR TIME 2010-03-17 11:37:58.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to DemoBiocase Wwg9II ddrcekmzlbmq, [url=http://onsjpjxjfwai.com/]onsjpjxjfwai[/url], [link=http://wgoiimstbazg.com/]wgoiimstbazg[/link], http://bmroeyolkggr.com/ ### ERROR LOG The Logging Results: ---------------------- 2010-03-17 10:37:58.000 Logging started. ---------------------- 2010-03-17 10:37:58.000 BioCASe protocol used. ---------------------- 2010-03-17 10:37:58.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['DemoBiocase']} ---------------------- 2010-03-17 10:37:58.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/DemoBiocase/provider_setup_file.xml ---------------------- 2010-03-17 10:37:58.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-03-17 10:37:58.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-03-17 10:37:58.000 All parameters found in the request: {'debug': '1', 'query': 'Wwg9II ddrcekmzlbmq, [url=http://onsjpjxjfwai.com/]onsjpjxjfwai[/url], [link=http://wgoiimstbazg.com/]wgoiimstbazg[/link], http://bmroeyolkggr.com/', 'request_string': 'Wwg9II ddrcekmzlbmq, [url=http://onsjpjxjfwai.com/]onsjpjxjfwai[/url], [link=http://wgoiimstbazg.com/]wgoiimstbazg[/link], http://bmroeyolkggr.com/'} ---------------------- 2010-03-17 10:37:58.000 Found online debuglevel setting: 1 ---------------------- 2010-03-17 10:37:58.000 Setting debuglevel from 0 to 1 ---------------------- 2010-03-17 10:37:58.000 REQ_PARSING_ERROR: The request could not be parsed. Please check if it is a valid XML document. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 87, in parseRequestString parseString(RequestString, handler) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/__init__.py", line 47, in parseString parser.parse(inpsrc) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 109, in parse xmlreader.IncrementalParser.parse(self, source) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/xmlreader.py", line 123, in parse self.feed(buffer) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 220, in feed self._err_handler.fatalError(exc) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/handler.py", line 38, in fatalError raise exception SAXParseException: :1:0: syntax error ---------------------- 2010-03-17 10:37:58.000 Serious PyWrapper instance crash Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/www/pywrapper.cgi", line 55, in ? pywInstance.setRequest() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 136, in setRequest self.protocolObj.setRequest(args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 37, in setRequest ProtocolBaseClass.setRequest(self, RequestClass, args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/base_protocol.py", line 41, in setRequest self.requestObj.setRequest(args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 48, in setRequest self.parseRequestString(args['request_string']) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 89, in parseRequestString raise RequestParseError(self.logObj) RequestParseError: ---------------------- 2010-03-17 10:37:58.000 Unknown Request-type : None ---------------------- 2010-03-17 10:37:58.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-03-17 11:54:48.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-03-17 11:54:48.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString YKbJbWvYWnqgMf nSapqlPzK oSGLtJeYp buy lasix drug qmxEgKsQvLfclobca yIbuCYKCCuclp vMyVisnwIzIVGvhk EfNFJhWmnEcsYW evwlmAolakX buy lasix drug
### ERROR LOG The Logging Results: ---------------------- 2010-03-17 10:54:48.000 Logging started. ---------------------- 2010-03-17 10:54:48.000 BioCASe protocol used. ---------------------- 2010-03-17 10:54:48.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-03-17 10:54:48.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-03-17 10:54:48.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-03-17 10:54:48.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-03-17 10:54:48.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-03-17 11:54:48.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n YKbJbWvYWnqgMf\n nSapqlPzK\n oSGLtJeYp\n buy lasix drug\n qmxEgKsQvLfclobca\n yIbuCYKCCuclp\n vMyVisnwIzIVGvhk\n EfNFJhWmnEcsYW\n evwlmAolakX\n buy lasix drug\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-03-17 11:54:48.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n YKbJbWvYWnqgMf\n nSapqlPzK\n oSGLtJeYp\n buy lasix drug\n qmxEgKsQvLfclobca\n yIbuCYKCCuclp\n vMyVisnwIzIVGvhk\n EfNFJhWmnEcsYW\n evwlmAolakX\n buy lasix drug\n\n\n\n \n
'} ---------------------- 2010-03-17 10:54:48.000 Found online debuglevel setting: 1 ---------------------- 2010-03-17 10:54:48.000 Setting debuglevel from 0 to 1 ---------------------- 2010-03-17 10:54:48.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-03-17 10:54:49.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-03-17 10:54:49.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-03-17 10:54:49.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-03-17 10:54:49.000 Pickled file is of latest revision. ---------------------- 2010-03-17 10:54:49.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-03-17 10:54:49.000 Original filter string parsed:
2.4.2 2010-03-17 11:54:48.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString YKbJbWvYWnqgMf nSapqlPzK oSGLtJeYp buy lasix drug qmxEgKsQvLfclobca yIbuCYKCCuclp vMyVisnwIzIVGvhk EfNFJhWmnEcsYW evwlmAolakX buy lasix drug
---------------------- 2010-03-17 10:54:49.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE YKbJbWvYWnqgMf ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = nSapqlPzK ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE oSGLtJeYp ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE buy lasix drug ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE qmxEgKsQvLfclobca ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE yIbuCYKCCuclp ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE vMyVisnwIzIVGvhk ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = EfNFJhWmnEcsYW ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = evwlmAolakX ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE buy lasix drug )) ---------------------- 2010-03-17 10:54:49.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE YKbJbWvYWnqgMf ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = nSapqlPzK ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE oSGLtJeYp ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE buy lasix drug ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE qmxEgKsQvLfclobca ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE yIbuCYKCCuclp ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE vMyVisnwIzIVGvhk ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = EfNFJhWmnEcsYW ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = evwlmAolakX ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE buy lasix drug )) ---------------------- 2010-03-17 10:54:49.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE YKbJbWvYWnqgMf ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = nSapqlPzK ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE oSGLtJeYp ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE buy lasix drug ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE qmxEgKsQvLfclobca ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE yIbuCYKCCuclp ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE vMyVisnwIzIVGvhk ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = EfNFJhWmnEcsYW ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = evwlmAolakX ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE buy lasix drug )) ---------------------- 2010-03-17 10:54:49.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE YKbJbWvYWnqgMf ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = nSapqlPzK ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE oSGLtJeYp ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE buy lasix drug ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE qmxEgKsQvLfclobca ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE yIbuCYKCCuclp ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE vMyVisnwIzIVGvhk ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = EfNFJhWmnEcsYW ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = evwlmAolakX ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE buy lasix drug )) ---------------------- 2010-03-17 10:54:49.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-03-17 10:54:49.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'YKbJbWvYWnqgMf' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'nSapqlPzK' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'oSGLtJeYp' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'buy lasix drug' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'qmxEgKsQvLfclobca' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'yIbuCYKCCuclp' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'vMyVisnwIzIVGvhk' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'EfNFJhWmnEcsYW' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'evwlmAolakX' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'buy lasix drug' ))' ---------------------- 2010-03-17 10:54:49.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "nSapqlPzK" ---------------------- 2010-03-17 10:54:49.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-03-17 12:01:50.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians a8UaYi vhurdjybrkey, [url=http://tysfexbfkkpp.com/]tysfexbfkkpp[/url], [link=http://hxujgcyebclx.com/]hxujgcyebclx[/link], http://axqleokhibwp.com/ ### ERROR LOG The Logging Results: ---------------------- 2010-03-17 11:01:50.000 Logging started. ---------------------- 2010-03-17 11:01:50.000 BioCASe protocol used. ---------------------- 2010-03-17 11:01:50.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-03-17 11:01:50.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-03-17 11:01:50.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-03-17 11:01:50.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-03-17 11:01:50.000 All parameters found in the request: {'debug': '1', 'query': 'a8UaYi vhurdjybrkey, [url=http://tysfexbfkkpp.com/]tysfexbfkkpp[/url], [link=http://hxujgcyebclx.com/]hxujgcyebclx[/link], http://axqleokhibwp.com/', 'request_string': 'a8UaYi vhurdjybrkey, [url=http://tysfexbfkkpp.com/]tysfexbfkkpp[/url], [link=http://hxujgcyebclx.com/]hxujgcyebclx[/link], http://axqleokhibwp.com/'} ---------------------- 2010-03-17 11:01:50.000 Found online debuglevel setting: 1 ---------------------- 2010-03-17 11:01:50.000 Setting debuglevel from 0 to 1 ---------------------- 2010-03-17 11:01:50.000 REQ_PARSING_ERROR: The request could not be parsed. Please check if it is a valid XML document. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 87, in parseRequestString parseString(RequestString, handler) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/__init__.py", line 47, in parseString parser.parse(inpsrc) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 109, in parse xmlreader.IncrementalParser.parse(self, source) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/xmlreader.py", line 123, in parse self.feed(buffer) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 220, in feed self._err_handler.fatalError(exc) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/handler.py", line 38, in fatalError raise exception SAXParseException: :1:0: syntax error ---------------------- 2010-03-17 11:01:50.000 Serious PyWrapper instance crash Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/www/pywrapper.cgi", line 55, in ? pywInstance.setRequest() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 136, in setRequest self.protocolObj.setRequest(args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 37, in setRequest ProtocolBaseClass.setRequest(self, RequestClass, args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/base_protocol.py", line 41, in setRequest self.requestObj.setRequest(args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 48, in setRequest self.parseRequestString(args['request_string']) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 89, in parseRequestString raise RequestParseError(self.logObj) RequestParseError: ---------------------- 2010-03-17 11:01:50.000 Unknown Request-type : None ---------------------- 2010-03-17 11:01:50.000 Setting debuglevel from 1 to 3 **************************************** TRAINING **************************************** ### ERROR TIME 2010-03-17 17:17:42.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to training Dv5DcJ caquvctyumlh, [url=http://zyjdnmyobbfu.com/]zyjdnmyobbfu[/url], [link=http://pcyldyzyimha.com/]pcyldyzyimha[/link], http://agmtmvjzxjsx.com/ ### ERROR LOG The Logging Results: ---------------------- 2010-03-17 16:17:42.000 Logging started. ---------------------- 2010-03-17 16:17:42.000 BioCASe protocol used. ---------------------- 2010-03-17 16:17:42.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['training']} ---------------------- 2010-03-17 16:17:42.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/training/provider_setup_file.xml ---------------------- 2010-03-17 16:17:42.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-03-17 16:17:42.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-03-17 16:17:42.000 All parameters found in the request: {'debug': '1', 'query': 'Dv5DcJ caquvctyumlh, [url=http://zyjdnmyobbfu.com/]zyjdnmyobbfu[/url], [link=http://pcyldyzyimha.com/]pcyldyzyimha[/link], http://agmtmvjzxjsx.com/', 'request_string': 'Dv5DcJ caquvctyumlh, [url=http://zyjdnmyobbfu.com/]zyjdnmyobbfu[/url], [link=http://pcyldyzyimha.com/]pcyldyzyimha[/link], http://agmtmvjzxjsx.com/'} ---------------------- 2010-03-17 16:17:42.000 Found online debuglevel setting: 1 ---------------------- 2010-03-17 16:17:42.000 Setting debuglevel from 0 to 1 ---------------------- 2010-03-17 16:17:42.000 REQ_PARSING_ERROR: The request could not be parsed. Please check if it is a valid XML document. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 87, in parseRequestString parseString(RequestString, handler) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/__init__.py", line 47, in parseString parser.parse(inpsrc) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 109, in parse xmlreader.IncrementalParser.parse(self, source) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/xmlreader.py", line 123, in parse self.feed(buffer) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 220, in feed self._err_handler.fatalError(exc) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/handler.py", line 38, in fatalError raise exception SAXParseException: :1:0: syntax error ---------------------- 2010-03-17 16:17:42.000 Serious PyWrapper instance crash Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/www/pywrapper.cgi", line 55, in ? pywInstance.setRequest() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 136, in setRequest self.protocolObj.setRequest(args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 37, in setRequest ProtocolBaseClass.setRequest(self, RequestClass, args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/base_protocol.py", line 41, in setRequest self.requestObj.setRequest(args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 48, in setRequest self.parseRequestString(args['request_string']) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 89, in parseRequestString raise RequestParseError(self.logObj) RequestParseError: ---------------------- 2010-03-17 16:17:42.000 Unknown Request-type : None ---------------------- 2010-03-17 16:17:42.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-03-17 17:33:19.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians roapW6 qumieovcdoik, [url=http://rmnecxnrvptz.com/]rmnecxnrvptz[/url], [link=http://aiwldgflkuwv.com/]aiwldgflkuwv[/link], http://nrohlfuwzrfj.com/ ### ERROR LOG The Logging Results: ---------------------- 2010-03-17 16:33:19.000 Logging started. ---------------------- 2010-03-17 16:33:19.000 BioCASe protocol used. ---------------------- 2010-03-17 16:33:19.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-03-17 16:33:19.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-03-17 16:33:19.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-03-17 16:33:19.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-03-17 16:33:19.000 All parameters found in the request: {'debug': '1', 'query': 'roapW6 qumieovcdoik, [url=http://rmnecxnrvptz.com/]rmnecxnrvptz[/url], [link=http://aiwldgflkuwv.com/]aiwldgflkuwv[/link], http://nrohlfuwzrfj.com/', 'request_string': 'roapW6 qumieovcdoik, [url=http://rmnecxnrvptz.com/]rmnecxnrvptz[/url], [link=http://aiwldgflkuwv.com/]aiwldgflkuwv[/link], http://nrohlfuwzrfj.com/'} ---------------------- 2010-03-17 16:33:19.000 Found online debuglevel setting: 1 ---------------------- 2010-03-17 16:33:19.000 Setting debuglevel from 0 to 1 ---------------------- 2010-03-17 16:33:19.000 REQ_PARSING_ERROR: The request could not be parsed. Please check if it is a valid XML document. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 87, in parseRequestString parseString(RequestString, handler) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/__init__.py", line 47, in parseString parser.parse(inpsrc) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 109, in parse xmlreader.IncrementalParser.parse(self, source) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/xmlreader.py", line 123, in parse self.feed(buffer) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 220, in feed self._err_handler.fatalError(exc) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/handler.py", line 38, in fatalError raise exception SAXParseException: :1:0: syntax error ---------------------- 2010-03-17 16:33:19.000 Serious PyWrapper instance crash Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/www/pywrapper.cgi", line 55, in ? pywInstance.setRequest() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 136, in setRequest self.protocolObj.setRequest(args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 37, in setRequest ProtocolBaseClass.setRequest(self, RequestClass, args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/base_protocol.py", line 41, in setRequest self.requestObj.setRequest(args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 48, in setRequest self.parseRequestString(args['request_string']) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 89, in parseRequestString raise RequestParseError(self.logObj) RequestParseError: ---------------------- 2010-03-17 16:33:19.000 Unknown Request-type : None ---------------------- 2010-03-17 16:33:19.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-03-17 18:08:16.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIF YGdwiE iunybkfsmmdx, [url=http://qwmobdscvrcm.com/]qwmobdscvrcm[/url], [link=http://loyfrhcmmilc.com/]loyfrhcmmilc[/link], http://qvbrmxxdsken.com/ ### ERROR LOG The Logging Results: ---------------------- 2010-03-17 17:08:16.000 Logging started. ---------------------- 2010-03-17 17:08:16.000 BioCASe protocol used. ---------------------- 2010-03-17 17:08:16.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-03-17 17:08:16.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-03-17 17:08:16.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-03-17 17:08:16.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-03-17 17:08:16.000 All parameters found in the request: {'debug': '1', 'query': 'YGdwiE iunybkfsmmdx, [url=http://qwmobdscvrcm.com/]qwmobdscvrcm[/url], [link=http://loyfrhcmmilc.com/]loyfrhcmmilc[/link], http://qvbrmxxdsken.com/', 'request_string': 'YGdwiE iunybkfsmmdx, [url=http://qwmobdscvrcm.com/]qwmobdscvrcm[/url], [link=http://loyfrhcmmilc.com/]loyfrhcmmilc[/link], http://qvbrmxxdsken.com/'} ---------------------- 2010-03-17 17:08:16.000 Found online debuglevel setting: 1 ---------------------- 2010-03-17 17:08:16.000 Setting debuglevel from 0 to 1 ---------------------- 2010-03-17 17:08:16.000 REQ_PARSING_ERROR: The request could not be parsed. Please check if it is a valid XML document. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 87, in parseRequestString parseString(RequestString, handler) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/__init__.py", line 47, in parseString parser.parse(inpsrc) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 109, in parse xmlreader.IncrementalParser.parse(self, source) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/xmlreader.py", line 123, in parse self.feed(buffer) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 220, in feed self._err_handler.fatalError(exc) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/handler.py", line 38, in fatalError raise exception SAXParseException: :1:0: syntax error ---------------------- 2010-03-17 17:08:16.000 Serious PyWrapper instance crash Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/www/pywrapper.cgi", line 55, in ? pywInstance.setRequest() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 136, in setRequest self.protocolObj.setRequest(args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 37, in setRequest ProtocolBaseClass.setRequest(self, RequestClass, args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/base_protocol.py", line 41, in setRequest self.requestObj.setRequest(args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 48, in setRequest self.parseRequestString(args['request_string']) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 89, in parseRequestString raise RequestParseError(self.logObj) RequestParseError: ---------------------- 2010-03-17 17:08:16.000 Unknown Request-type : None ---------------------- 2010-03-17 17:08:16.000 Setting debuglevel from 1 to 3 **************************************** HERPNETRMCA **************************************** ### ERROR TIME 2010-03-18 02:11:01.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to herpNETRMCA lp2cBo pezqitcjpmfl, [url=http://vmzqgxchoqjm.com/]vmzqgxchoqjm[/url], [link=http://qmdjqvdaokwr.com/]qmdjqvdaokwr[/link], http://gdssxyqxzqma.com/ ### ERROR LOG The Logging Results: ---------------------- 2010-03-18 01:11:01.000 Logging started. ---------------------- 2010-03-18 01:11:01.000 BioCASe protocol used. ---------------------- 2010-03-18 01:11:01.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['herpNETRMCA']} ---------------------- 2010-03-18 01:11:01.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/herpNETRMCA/provider_setup_file.xml ---------------------- 2010-03-18 01:11:01.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-03-18 01:11:01.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-03-18 01:11:01.000 All parameters found in the request: {'debug': '1', 'query': 'lp2cBo pezqitcjpmfl, [url=http://vmzqgxchoqjm.com/]vmzqgxchoqjm[/url], [link=http://qmdjqvdaokwr.com/]qmdjqvdaokwr[/link], http://gdssxyqxzqma.com/', 'request_string': 'lp2cBo pezqitcjpmfl, [url=http://vmzqgxchoqjm.com/]vmzqgxchoqjm[/url], [link=http://qmdjqvdaokwr.com/]qmdjqvdaokwr[/link], http://gdssxyqxzqma.com/'} ---------------------- 2010-03-18 01:11:01.000 Found online debuglevel setting: 1 ---------------------- 2010-03-18 01:11:01.000 Setting debuglevel from 0 to 1 ---------------------- 2010-03-18 01:11:01.000 REQ_PARSING_ERROR: The request could not be parsed. Please check if it is a valid XML document. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 87, in parseRequestString parseString(RequestString, handler) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/__init__.py", line 47, in parseString parser.parse(inpsrc) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 109, in parse xmlreader.IncrementalParser.parse(self, source) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/xmlreader.py", line 123, in parse self.feed(buffer) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 220, in feed self._err_handler.fatalError(exc) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/handler.py", line 38, in fatalError raise exception SAXParseException: :1:0: syntax error ---------------------- 2010-03-18 01:11:01.000 Serious PyWrapper instance crash Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/www/pywrapper.cgi", line 55, in ? pywInstance.setRequest() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 136, in setRequest self.protocolObj.setRequest(args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 37, in setRequest ProtocolBaseClass.setRequest(self, RequestClass, args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/base_protocol.py", line 41, in setRequest self.requestObj.setRequest(args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 48, in setRequest self.parseRequestString(args['request_string']) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 89, in parseRequestString raise RequestParseError(self.logObj) RequestParseError: ---------------------- 2010-03-18 01:11:01.000 Unknown Request-type : None ---------------------- 2010-03-18 01:11:01.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINA **************************************** ### ERROR TIME 2010-03-18 03:08:46.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertina AeAY7p iyybkrqayllx, [url=http://ronhrfgvxbmc.com/]ronhrfgvxbmc[/url], [link=http://agduqobckisj.com/]agduqobckisj[/link], http://ibxxaugdoate.com/ ### ERROR LOG The Logging Results: ---------------------- 2010-03-18 02:08:46.000 Logging started. ---------------------- 2010-03-18 02:08:47.000 BioCASe protocol used. ---------------------- 2010-03-18 02:08:47.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertina']} ---------------------- 2010-03-18 02:08:47.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertina/provider_setup_file.xml ---------------------- 2010-03-18 02:08:47.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-03-18 02:08:47.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-03-18 02:08:47.000 All parameters found in the request: {'debug': '1', 'query': 'AeAY7p iyybkrqayllx, [url=http://ronhrfgvxbmc.com/]ronhrfgvxbmc[/url], [link=http://agduqobckisj.com/]agduqobckisj[/link], http://ibxxaugdoate.com/', 'request_string': 'AeAY7p iyybkrqayllx, [url=http://ronhrfgvxbmc.com/]ronhrfgvxbmc[/url], [link=http://agduqobckisj.com/]agduqobckisj[/link], http://ibxxaugdoate.com/'} ---------------------- 2010-03-18 02:08:47.000 Found online debuglevel setting: 1 ---------------------- 2010-03-18 02:08:47.000 Setting debuglevel from 0 to 1 ---------------------- 2010-03-18 02:08:47.000 REQ_PARSING_ERROR: The request could not be parsed. Please check if it is a valid XML document. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 87, in parseRequestString parseString(RequestString, handler) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/__init__.py", line 47, in parseString parser.parse(inpsrc) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 109, in parse xmlreader.IncrementalParser.parse(self, source) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/xmlreader.py", line 123, in parse self.feed(buffer) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 220, in feed self._err_handler.fatalError(exc) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/handler.py", line 38, in fatalError raise exception SAXParseException: :1:0: syntax error ---------------------- 2010-03-18 02:08:47.000 Serious PyWrapper instance crash Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/www/pywrapper.cgi", line 55, in ? pywInstance.setRequest() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 136, in setRequest self.protocolObj.setRequest(args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 37, in setRequest ProtocolBaseClass.setRequest(self, RequestClass, args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/base_protocol.py", line 41, in setRequest self.requestObj.setRequest(args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 48, in setRequest self.parseRequestString(args['request_string']) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 89, in parseRequestString raise RequestParseError(self.logObj) RequestParseError: ---------------------- 2010-03-18 02:08:47.000 Unknown Request-type : None ---------------------- 2010-03-18 02:08:47.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-03-18 03:09:32.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 jils4x xlzwxlztaorz, [url=http://eomdujhesmfz.com/]eomdujhesmfz[/url], [link=http://rrggglcmizqz.com/]rrggglcmizqz[/link], http://lndyqjtjwlfo.com/ ### ERROR LOG The Logging Results: ---------------------- 2010-03-18 02:09:32.000 Logging started. ---------------------- 2010-03-18 02:09:32.000 BioCASe protocol used. ---------------------- 2010-03-18 02:09:32.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-03-18 02:09:32.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-03-18 02:09:32.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-03-18 02:09:32.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-03-18 02:09:32.000 All parameters found in the request: {'debug': '1', 'query': 'jils4x xlzwxlztaorz, [url=http://eomdujhesmfz.com/]eomdujhesmfz[/url], [link=http://rrggglcmizqz.com/]rrggglcmizqz[/link], http://lndyqjtjwlfo.com/', 'request_string': 'jils4x xlzwxlztaorz, [url=http://eomdujhesmfz.com/]eomdujhesmfz[/url], [link=http://rrggglcmizqz.com/]rrggglcmizqz[/link], http://lndyqjtjwlfo.com/'} ---------------------- 2010-03-18 02:09:32.000 Found online debuglevel setting: 1 ---------------------- 2010-03-18 02:09:32.000 Setting debuglevel from 0 to 1 ---------------------- 2010-03-18 02:09:32.000 REQ_PARSING_ERROR: The request could not be parsed. Please check if it is a valid XML document. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 87, in parseRequestString parseString(RequestString, handler) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/__init__.py", line 47, in parseString parser.parse(inpsrc) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 109, in parse xmlreader.IncrementalParser.parse(self, source) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/xmlreader.py", line 123, in parse self.feed(buffer) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 220, in feed self._err_handler.fatalError(exc) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/handler.py", line 38, in fatalError raise exception SAXParseException: :1:0: syntax error ---------------------- 2010-03-18 02:09:32.000 Serious PyWrapper instance crash Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/www/pywrapper.cgi", line 55, in ? pywInstance.setRequest() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 136, in setRequest self.protocolObj.setRequest(args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 37, in setRequest ProtocolBaseClass.setRequest(self, RequestClass, args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/base_protocol.py", line 41, in setRequest self.requestObj.setRequest(args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 48, in setRequest self.parseRequestString(args['request_string']) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 89, in parseRequestString raise RequestParseError(self.logObj) RequestParseError: ---------------------- 2010-03-18 02:09:32.000 Unknown Request-type : None ---------------------- 2010-03-18 02:09:32.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-03-18 03:09:39.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2010-03-18 02:09:39.000 Logging started. ---------------------- 2010-03-18 02:09:39.000 BioCASe protocol used. ---------------------- 2010-03-18 02:09:39.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-03-18 02:09:39.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-03-18 02:09:39.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-03-18 02:09:39.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2010-03-18 02:09:39.000 Unknown request type! Default to capabilities. ---------------------- 2010-03-18 02:09:39.000 Destination hostname could not be determined ---------------------- 2010-03-18 02:09:39.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2010-03-18 02:09:39.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2010-03-18 02:09:39.000 Reset CMF convenience cache data hash. ---------------------- 2010-03-18 02:09:39.000 Loading CMF from the source XML file. ---------------------- 2010-03-18 02:09:39.000 CMF Version 2.1 detected. ---------------------- 2010-03-18 02:09:39.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2010-03-18 02:09:39.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2010-03-18 02:09:39.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-03-18 02:09:39.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-03-18 02:09:39.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-03-18 02:09:39.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-03-18 02:09:39.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-03-18 02:09:39.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2010-03-18 03:14:39.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck phU1q7 nrziwqidrnex, [url=http://puiapsrlmnke.com/]puiapsrlmnke[/url], [link=http://gdbbkkmrhocq.com/]gdbbkkmrhocq[/link], http://thsanoaqfoyj.com/ ### ERROR LOG The Logging Results: ---------------------- 2010-03-18 02:14:39.000 Logging started. ---------------------- 2010-03-18 02:14:39.000 BioCASe protocol used. ---------------------- 2010-03-18 02:14:39.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2010-03-18 02:14:39.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2010-03-18 02:14:39.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-03-18 02:14:39.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-03-18 02:14:39.000 All parameters found in the request: {'debug': '1', 'query': 'phU1q7 nrziwqidrnex, [url=http://puiapsrlmnke.com/]puiapsrlmnke[/url], [link=http://gdbbkkmrhocq.com/]gdbbkkmrhocq[/link], http://thsanoaqfoyj.com/', 'request_string': 'phU1q7 nrziwqidrnex, [url=http://puiapsrlmnke.com/]puiapsrlmnke[/url], [link=http://gdbbkkmrhocq.com/]gdbbkkmrhocq[/link], http://thsanoaqfoyj.com/'} ---------------------- 2010-03-18 02:14:39.000 Found online debuglevel setting: 1 ---------------------- 2010-03-18 02:14:39.000 Setting debuglevel from 0 to 1 ---------------------- 2010-03-18 02:14:39.000 REQ_PARSING_ERROR: The request could not be parsed. Please check if it is a valid XML document. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 87, in parseRequestString parseString(RequestString, handler) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/__init__.py", line 47, in parseString parser.parse(inpsrc) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 109, in parse xmlreader.IncrementalParser.parse(self, source) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/xmlreader.py", line 123, in parse self.feed(buffer) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 220, in feed self._err_handler.fatalError(exc) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/handler.py", line 38, in fatalError raise exception SAXParseException: :1:0: syntax error ---------------------- 2010-03-18 02:14:39.000 Serious PyWrapper instance crash Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/www/pywrapper.cgi", line 55, in ? pywInstance.setRequest() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 136, in setRequest self.protocolObj.setRequest(args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 37, in setRequest ProtocolBaseClass.setRequest(self, RequestClass, args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/base_protocol.py", line 41, in setRequest self.requestObj.setRequest(args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 48, in setRequest self.parseRequestString(args['request_string']) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 89, in parseRequestString raise RequestParseError(self.logObj) RequestParseError: ---------------------- 2010-03-18 02:14:39.000 Unknown Request-type : None ---------------------- 2010-03-18 02:14:39.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2010-03-18 03:14:59.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2010-03-18 02:14:59.000 Logging started. ---------------------- 2010-03-18 02:14:59.000 BioCASe protocol used. ---------------------- 2010-03-18 02:14:59.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2010-03-18 02:14:59.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2010-03-18 02:14:59.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-03-18 02:14:59.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2010-03-18 02:14:59.000 Unknown request type! Default to capabilities. ---------------------- 2010-03-18 02:14:59.000 Destination hostname could not be determined ---------------------- 2010-03-18 02:14:59.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2010-03-18 02:14:59.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-03-18 02:15:00.000 Pickled file is of latest revision. ---------------------- 2010-03-18 02:15:00.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2010-03-18 02:15:00.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2010-03-18 02:15:00.000 Reset CMF convenience cache data hash. ---------------------- 2010-03-18 02:15:00.000 Loading CMF from the source XML file. ---------------------- 2010-03-18 02:15:00.000 CMF Version 2.1 detected. ---------------------- 2010-03-18 02:15:00.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2010-03-18 02:15:00.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2010-03-18 02:15:00.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-03-18 02:15:00.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-03-18 02:15:00.000 Setting debuglevel from 0 to 3 **************************************** PONTAURUS **************************************** ### ERROR TIME 2010-03-18 04:26:12.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to pontaurus QzMHha wzhrfimuorii, [url=http://sqsvwapcsjvj.com/]sqsvwapcsjvj[/url], [link=http://xlzscmonoznb.com/]xlzscmonoznb[/link], http://tiprplcgwhlt.com/ ### ERROR LOG The Logging Results: ---------------------- 2010-03-18 03:26:12.000 Logging started. ---------------------- 2010-03-18 03:26:12.000 BioCASe protocol used. ---------------------- 2010-03-18 03:26:12.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['pontaurus']} ---------------------- 2010-03-18 03:26:12.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/pontaurus/provider_setup_file.xml ---------------------- 2010-03-18 03:26:12.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-03-18 03:26:12.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-03-18 03:26:12.000 All parameters found in the request: {'debug': '1', 'query': 'QzMHha wzhrfimuorii, [url=http://sqsvwapcsjvj.com/]sqsvwapcsjvj[/url], [link=http://xlzscmonoznb.com/]xlzscmonoznb[/link], http://tiprplcgwhlt.com/', 'request_string': 'QzMHha wzhrfimuorii, [url=http://sqsvwapcsjvj.com/]sqsvwapcsjvj[/url], [link=http://xlzscmonoznb.com/]xlzscmonoznb[/link], http://tiprplcgwhlt.com/'} ---------------------- 2010-03-18 03:26:12.000 Found online debuglevel setting: 1 ---------------------- 2010-03-18 03:26:12.000 Setting debuglevel from 0 to 1 ---------------------- 2010-03-18 03:26:12.000 REQ_PARSING_ERROR: The request could not be parsed. Please check if it is a valid XML document. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 87, in parseRequestString parseString(RequestString, handler) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/__init__.py", line 47, in parseString parser.parse(inpsrc) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 109, in parse xmlreader.IncrementalParser.parse(self, source) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/xmlreader.py", line 123, in parse self.feed(buffer) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 220, in feed self._err_handler.fatalError(exc) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/handler.py", line 38, in fatalError raise exception SAXParseException: :1:0: syntax error ---------------------- 2010-03-18 03:26:12.000 Serious PyWrapper instance crash Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/www/pywrapper.cgi", line 55, in ? pywInstance.setRequest() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 136, in setRequest self.protocolObj.setRequest(args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 37, in setRequest ProtocolBaseClass.setRequest(self, RequestClass, args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/base_protocol.py", line 41, in setRequest self.requestObj.setRequest(args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 48, in setRequest self.parseRequestString(args['request_string']) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 89, in parseRequestString raise RequestParseError(self.logObj) RequestParseError: ---------------------- 2010-03-18 03:26:12.000 Unknown Request-type : None ---------------------- 2010-03-18 03:26:12.000 Setting debuglevel from 1 to 3 **************************************** TESTRMCA **************************************** ### ERROR TIME 2010-03-18 04:50:40.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to testRMCA mAmCSO yyzuhuubkvxe, [url=http://gajaljknqcll.com/]gajaljknqcll[/url], [link=http://iqvkxlwuxcyb.com/]iqvkxlwuxcyb[/link], http://nmjovzslqrwm.com/ ### ERROR LOG The Logging Results: ---------------------- 2010-03-18 03:50:40.000 Logging started. ---------------------- 2010-03-18 03:50:40.000 BioCASe protocol used. ---------------------- 2010-03-18 03:50:40.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['testRMCA']} ---------------------- 2010-03-18 03:50:40.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/testRMCA/provider_setup_file.xml ---------------------- 2010-03-18 03:50:40.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-03-18 03:50:40.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-03-18 03:50:40.000 All parameters found in the request: {'debug': '1', 'query': 'mAmCSO yyzuhuubkvxe, [url=http://gajaljknqcll.com/]gajaljknqcll[/url], [link=http://iqvkxlwuxcyb.com/]iqvkxlwuxcyb[/link], http://nmjovzslqrwm.com/', 'request_string': 'mAmCSO yyzuhuubkvxe, [url=http://gajaljknqcll.com/]gajaljknqcll[/url], [link=http://iqvkxlwuxcyb.com/]iqvkxlwuxcyb[/link], http://nmjovzslqrwm.com/'} ---------------------- 2010-03-18 03:50:40.000 Found online debuglevel setting: 1 ---------------------- 2010-03-18 03:50:40.000 Setting debuglevel from 0 to 1 ---------------------- 2010-03-18 03:50:40.000 REQ_PARSING_ERROR: The request could not be parsed. Please check if it is a valid XML document. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 87, in parseRequestString parseString(RequestString, handler) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/__init__.py", line 47, in parseString parser.parse(inpsrc) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 109, in parse xmlreader.IncrementalParser.parse(self, source) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/xmlreader.py", line 123, in parse self.feed(buffer) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 220, in feed self._err_handler.fatalError(exc) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/handler.py", line 38, in fatalError raise exception SAXParseException: :1:0: syntax error ---------------------- 2010-03-18 03:50:40.000 Serious PyWrapper instance crash Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/www/pywrapper.cgi", line 55, in ? pywInstance.setRequest() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 136, in setRequest self.protocolObj.setRequest(args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 37, in setRequest ProtocolBaseClass.setRequest(self, RequestClass, args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/base_protocol.py", line 41, in setRequest self.requestObj.setRequest(args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 48, in setRequest self.parseRequestString(args['request_string']) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 89, in parseRequestString raise RequestParseError(self.logObj) RequestParseError: ---------------------- 2010-03-18 03:50:40.000 Unknown Request-type : None ---------------------- 2010-03-18 03:50:40.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAZOOMIFY **************************************** ### ERROR TIME 2010-03-18 08:12:15.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaZoomify Hi0PfB jlblyloppzed, [url=http://qyzeehcynfnl.com/]qyzeehcynfnl[/url], [link=http://hguqnpiheypy.com/]hguqnpiheypy[/link], http://foquapdxhiad.com/ ### ERROR LOG The Logging Results: ---------------------- 2010-03-18 07:12:15.000 Logging started. ---------------------- 2010-03-18 07:12:15.000 BioCASe protocol used. ---------------------- 2010-03-18 07:12:15.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaZoomify']} ---------------------- 2010-03-18 07:12:15.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaZoomify/provider_setup_file.xml ---------------------- 2010-03-18 07:12:15.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-03-18 07:12:15.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-03-18 07:12:15.000 All parameters found in the request: {'debug': '1', 'query': 'Hi0PfB jlblyloppzed, [url=http://qyzeehcynfnl.com/]qyzeehcynfnl[/url], [link=http://hguqnpiheypy.com/]hguqnpiheypy[/link], http://foquapdxhiad.com/', 'request_string': 'Hi0PfB jlblyloppzed, [url=http://qyzeehcynfnl.com/]qyzeehcynfnl[/url], [link=http://hguqnpiheypy.com/]hguqnpiheypy[/link], http://foquapdxhiad.com/'} ---------------------- 2010-03-18 07:12:15.000 Found online debuglevel setting: 1 ---------------------- 2010-03-18 07:12:15.000 Setting debuglevel from 0 to 1 ---------------------- 2010-03-18 07:12:15.000 REQ_PARSING_ERROR: The request could not be parsed. Please check if it is a valid XML document. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 87, in parseRequestString parseString(RequestString, handler) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/__init__.py", line 47, in parseString parser.parse(inpsrc) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 109, in parse xmlreader.IncrementalParser.parse(self, source) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/xmlreader.py", line 123, in parse self.feed(buffer) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 220, in feed self._err_handler.fatalError(exc) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/handler.py", line 38, in fatalError raise exception SAXParseException: :1:0: syntax error ---------------------- 2010-03-18 07:12:15.000 Serious PyWrapper instance crash Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/www/pywrapper.cgi", line 55, in ? pywInstance.setRequest() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 136, in setRequest self.protocolObj.setRequest(args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 37, in setRequest ProtocolBaseClass.setRequest(self, RequestClass, args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/base_protocol.py", line 41, in setRequest self.requestObj.setRequest(args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 48, in setRequest self.parseRequestString(args['request_string']) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 89, in parseRequestString raise RequestParseError(self.logObj) RequestParseError: ---------------------- 2010-03-18 07:12:15.000 Unknown Request-type : None ---------------------- 2010-03-18 07:12:15.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2010-03-18 19:52:56.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2010-03-18 18:52:56.000 Logging started. ---------------------- 2010-03-18 18:52:56.000 BioCASe protocol used. ---------------------- 2010-03-18 18:52:56.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2010-03-18 18:52:56.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2010-03-18 18:52:56.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-03-18 18:52:56.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2010-03-18 18:52:56.000 Unknown request type! Default to capabilities. ---------------------- 2010-03-18 18:52:56.000 Destination hostname could not be determined ---------------------- 2010-03-18 18:52:56.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2010-03-18 18:52:56.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-03-18 18:52:56.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-03-18 18:52:56.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2010-03-18 18:52:56.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-03-18 18:52:56.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-03-18 18:52:56.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-03-19 01:43:08.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-03-19 01:00:22.33 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-03-19 00:43:08.000 Logging started. ---------------------- 2010-03-19 00:43:08.000 BioCASe protocol used. ---------------------- 2010-03-19 00:43:08.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-03-19 00:43:08.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-03-19 00:43:08.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-03-19 00:43:09.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-03-19 00:43:09.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-03-19 01:00:22.33\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-03-19 01:00:22.33\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-03-19 01:00:22.33\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-03-19 00:43:09.000 Found online debuglevel setting: 1 ---------------------- 2010-03-19 00:43:09.000 Setting debuglevel from 0 to 1 ---------------------- 2010-03-19 00:43:09.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-03-19 00:43:09.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-03-19 00:43:09.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-03-19 00:43:09.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-03-19 00:43:09.000 Pickled file is of latest revision. ---------------------- 2010-03-19 00:43:09.000 Original filter string parsed:
0.1 2010-03-19 01:00:22.33 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-03-19 00:43:09.000 Filter created: None ---------------------- 2010-03-19 00:43:09.000 Compressed filter used: None ---------------------- 2010-03-19 00:43:09.000 Counting total matched records with filter=None ---------------------- 2010-03-19 00:43:09.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-03-19 00:43:09.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2010-03-20 12:23:33.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2010-03-20 11:23:33.000 Logging started. ---------------------- 2010-03-20 11:23:33.000 BioCASe protocol used. ---------------------- 2010-03-20 11:23:33.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2010-03-20 11:23:33.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2010-03-20 11:23:33.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-03-20 11:23:33.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2010-03-20 11:23:33.000 Unknown request type! Default to capabilities. ---------------------- 2010-03-20 11:23:33.000 Destination hostname could not be determined ---------------------- 2010-03-20 11:23:33.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2010-03-20 11:23:33.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-03-20 11:23:33.000 Pickled file is of latest revision. ---------------------- 2010-03-20 11:23:33.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2010-03-20 11:23:33.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2010-03-20 11:23:33.000 Reset CMF convenience cache data hash. ---------------------- 2010-03-20 11:23:33.000 Loading CMF from the source XML file. ---------------------- 2010-03-20 11:23:33.000 CMF Version 2.1 detected. ---------------------- 2010-03-20 11:23:34.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2010-03-20 11:23:34.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2010-03-20 11:23:34.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-03-20 11:23:34.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-03-20 11:23:34.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-03-20 23:26:54.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-03-20 23:26:53.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString FPLQDgnhFgudnLhDRW XaNUABxJbezk DhaiuhLGNdTNIxXccj name ufOJlQgldy moCuElvylfBsAO AUjehLHVkNnEbBSk HLGeNOOrzRStDB irpQBuozMhyNz name
### ERROR LOG The Logging Results: ---------------------- 2010-03-20 22:26:54.000 Logging started. ---------------------- 2010-03-20 22:26:54.000 BioCASe protocol used. ---------------------- 2010-03-20 22:26:54.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-03-20 22:26:54.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-03-20 22:26:54.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-03-20 22:26:54.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-03-20 22:26:54.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-03-20 23:26:53.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n FPLQDgnhFgudnLhDRW\n XaNUABxJbezk\n DhaiuhLGNdTNIxXccj\n name\n ufOJlQgldy\n moCuElvylfBsAO\n AUjehLHVkNnEbBSk\n HLGeNOOrzRStDB\n irpQBuozMhyNz\n name\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-03-20 23:26:53.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n FPLQDgnhFgudnLhDRW\n XaNUABxJbezk\n DhaiuhLGNdTNIxXccj\n name\n ufOJlQgldy\n moCuElvylfBsAO\n AUjehLHVkNnEbBSk\n HLGeNOOrzRStDB\n irpQBuozMhyNz\n name\n\n\n\n \n
'} ---------------------- 2010-03-20 22:26:54.000 Found online debuglevel setting: 1 ---------------------- 2010-03-20 22:26:54.000 Setting debuglevel from 0 to 1 ---------------------- 2010-03-20 22:26:54.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-03-20 22:26:54.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-03-20 22:26:54.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-03-20 22:26:54.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-03-20 22:26:54.000 Pickled file is of latest revision. ---------------------- 2010-03-20 22:26:54.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-03-20 22:26:54.000 Original filter string parsed:
2.4.2 2010-03-20 23:26:53.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString FPLQDgnhFgudnLhDRW XaNUABxJbezk DhaiuhLGNdTNIxXccj name ufOJlQgldy moCuElvylfBsAO AUjehLHVkNnEbBSk HLGeNOOrzRStDB irpQBuozMhyNz name
---------------------- 2010-03-20 22:26:54.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE FPLQDgnhFgudnLhDRW ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = XaNUABxJbezk ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE DhaiuhLGNdTNIxXccj ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE name ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE ufOJlQgldy ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE moCuElvylfBsAO ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE AUjehLHVkNnEbBSk ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = HLGeNOOrzRStDB ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = irpQBuozMhyNz ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE name )) ---------------------- 2010-03-20 22:26:54.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE FPLQDgnhFgudnLhDRW ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = XaNUABxJbezk ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE DhaiuhLGNdTNIxXccj ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE name ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE ufOJlQgldy ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE moCuElvylfBsAO ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE AUjehLHVkNnEbBSk ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = HLGeNOOrzRStDB ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = irpQBuozMhyNz ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE name )) ---------------------- 2010-03-20 22:26:54.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE FPLQDgnhFgudnLhDRW ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = XaNUABxJbezk ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE DhaiuhLGNdTNIxXccj ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE name ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE ufOJlQgldy ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE moCuElvylfBsAO ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE AUjehLHVkNnEbBSk ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = HLGeNOOrzRStDB ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = irpQBuozMhyNz ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE name )) ---------------------- 2010-03-20 22:26:54.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE FPLQDgnhFgudnLhDRW ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = XaNUABxJbezk ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE DhaiuhLGNdTNIxXccj ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE name ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE ufOJlQgldy ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE moCuElvylfBsAO ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE AUjehLHVkNnEbBSk ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = HLGeNOOrzRStDB ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = irpQBuozMhyNz ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE name )) ---------------------- 2010-03-20 22:26:54.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-03-20 22:26:54.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'FPLQDgnhFgudnLhDRW' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'XaNUABxJbezk' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'DhaiuhLGNdTNIxXccj' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'name' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'ufOJlQgldy' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'moCuElvylfBsAO' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'AUjehLHVkNnEbBSk' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'HLGeNOOrzRStDB' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'irpQBuozMhyNz' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'name' ))' ---------------------- 2010-03-20 22:26:55.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "XaNUABxJbezk" ---------------------- 2010-03-20 22:26:55.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-03-21 03:18:52.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2010-03-21 02:18:52.000 Logging started. ---------------------- 2010-03-21 02:18:52.000 BioCASe protocol used. ---------------------- 2010-03-21 02:18:52.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-03-21 02:18:52.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-03-21 02:18:52.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-03-21 02:18:52.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2010-03-21 02:18:52.000 Unknown request type! Default to capabilities. ---------------------- 2010-03-21 02:18:52.000 Destination hostname could not be determined ---------------------- 2010-03-21 02:18:52.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2010-03-21 02:18:52.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2010-03-21 02:18:52.000 Reset CMF convenience cache data hash. ---------------------- 2010-03-21 02:18:52.000 Loading CMF from the source XML file. ---------------------- 2010-03-21 02:18:52.000 CMF Version 2.1 detected. ---------------------- 2010-03-21 02:18:53.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2010-03-21 02:18:53.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2010-03-21 02:18:53.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-03-21 02:18:53.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-03-21 02:18:53.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-03-21 02:18:53.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-03-21 02:18:53.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-03-21 02:18:53.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-03-21 07:25:18.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2010-03-21 06:25:18.000 Logging started. ---------------------- 2010-03-21 06:25:18.000 BioCASe protocol used. ---------------------- 2010-03-21 06:25:18.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-03-21 06:25:18.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-03-21 06:25:18.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-03-21 06:25:18.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2010-03-21 06:25:18.000 Unknown request type! Default to capabilities. ---------------------- 2010-03-21 06:25:18.000 Destination hostname could not be determined ---------------------- 2010-03-21 06:25:18.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2010-03-21 06:25:18.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2010-03-21 06:25:18.000 Reset CMF convenience cache data hash. ---------------------- 2010-03-21 06:25:18.000 Loading CMF from the source XML file. ---------------------- 2010-03-21 06:25:18.000 CMF Version 2.1 detected. ---------------------- 2010-03-21 06:25:19.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2010-03-21 06:25:19.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2010-03-21 06:25:19.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-03-21 06:25:19.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-03-21 06:25:19.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-03-21 06:25:19.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-03-21 06:25:19.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-03-21 06:25:19.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-03-21 08:22:50.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-03-21 08:22:49.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString mqATObCqHFN WoNmHQIFOb KCSzCxuUy buy nexium 40 mg SFqhbCRgMy ukiMKcJGl xzXyjtxVRXAVwY jMZlwUwsPQA ugSJaNlkhzjwXdD buy nexium 40 mg
### ERROR LOG The Logging Results: ---------------------- 2010-03-21 07:22:50.000 Logging started. ---------------------- 2010-03-21 07:22:50.000 BioCASe protocol used. ---------------------- 2010-03-21 07:22:50.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-03-21 07:22:50.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-03-21 07:22:50.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-03-21 07:22:50.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-03-21 07:22:50.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-03-21 08:22:49.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n mqATObCqHFN\n WoNmHQIFOb\n KCSzCxuUy\n buy nexium 40 mg\n SFqhbCRgMy\n ukiMKcJGl\n xzXyjtxVRXAVwY\n jMZlwUwsPQA\n ugSJaNlkhzjwXdD\n buy nexium 40 mg\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-03-21 08:22:49.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n mqATObCqHFN\n WoNmHQIFOb\n KCSzCxuUy\n buy nexium 40 mg\n SFqhbCRgMy\n ukiMKcJGl\n xzXyjtxVRXAVwY\n jMZlwUwsPQA\n ugSJaNlkhzjwXdD\n buy nexium 40 mg\n\n\n\n \n
'} ---------------------- 2010-03-21 07:22:50.000 Found online debuglevel setting: 1 ---------------------- 2010-03-21 07:22:50.000 Setting debuglevel from 0 to 1 ---------------------- 2010-03-21 07:22:50.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-03-21 07:22:50.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-03-21 07:22:50.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-03-21 07:22:50.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-03-21 07:22:50.000 Pickled file is of latest revision. ---------------------- 2010-03-21 07:22:50.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-03-21 07:22:50.000 Original filter string parsed:
2.4.2 2010-03-21 08:22:49.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString mqATObCqHFN WoNmHQIFOb KCSzCxuUy buy nexium 40 mg SFqhbCRgMy ukiMKcJGl xzXyjtxVRXAVwY jMZlwUwsPQA ugSJaNlkhzjwXdD buy nexium 40 mg
---------------------- 2010-03-21 07:22:50.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE mqATObCqHFN ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = WoNmHQIFOb ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE KCSzCxuUy ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE buy nexium 40 mg ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE SFqhbCRgMy ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE ukiMKcJGl ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE xzXyjtxVRXAVwY ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = jMZlwUwsPQA ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ugSJaNlkhzjwXdD ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE buy nexium 40 mg )) ---------------------- 2010-03-21 07:22:50.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE mqATObCqHFN ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = WoNmHQIFOb ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE KCSzCxuUy ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE buy nexium 40 mg ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE SFqhbCRgMy ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE ukiMKcJGl ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE xzXyjtxVRXAVwY ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = jMZlwUwsPQA ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ugSJaNlkhzjwXdD ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE buy nexium 40 mg )) ---------------------- 2010-03-21 07:22:50.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE mqATObCqHFN ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = WoNmHQIFOb ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE KCSzCxuUy ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE buy nexium 40 mg ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE SFqhbCRgMy ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE ukiMKcJGl ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE xzXyjtxVRXAVwY ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = jMZlwUwsPQA ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ugSJaNlkhzjwXdD ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE buy nexium 40 mg )) ---------------------- 2010-03-21 07:22:50.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE mqATObCqHFN ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = WoNmHQIFOb ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE KCSzCxuUy ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE buy nexium 40 mg ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE SFqhbCRgMy ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE ukiMKcJGl ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE xzXyjtxVRXAVwY ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = jMZlwUwsPQA ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ugSJaNlkhzjwXdD ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE buy nexium 40 mg )) ---------------------- 2010-03-21 07:22:50.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-03-21 07:22:50.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'mqATObCqHFN' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'WoNmHQIFOb' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'KCSzCxuUy' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'buy nexium 40 mg' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'SFqhbCRgMy' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'ukiMKcJGl' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'xzXyjtxVRXAVwY' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'jMZlwUwsPQA' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'ugSJaNlkhzjwXdD' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'buy nexium 40 mg' ))' ---------------------- 2010-03-21 07:22:50.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "WoNmHQIFOb" ---------------------- 2010-03-21 07:22:51.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-03-21 12:04:02.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-03-21 12:04:01.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString XCbuDGGcNKj cGzkrmGxc LZKtKnVfLqiyHqQE ocldfsengul GbanCpcZvfNDV lrmeCEiPxUdorzb gQIzTDAhG UTSzQDIP AjRxPwoJdtGhHvWV ocldfsengul
### ERROR LOG The Logging Results: ---------------------- 2010-03-21 11:04:02.000 Logging started. ---------------------- 2010-03-21 11:04:02.000 BioCASe protocol used. ---------------------- 2010-03-21 11:04:02.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-03-21 11:04:02.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-03-21 11:04:02.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-03-21 11:04:02.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-03-21 11:04:02.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-03-21 12:04:01.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n XCbuDGGcNKj\n cGzkrmGxc\n LZKtKnVfLqiyHqQE\n ocldfsengul\n GbanCpcZvfNDV\n lrmeCEiPxUdorzb\n gQIzTDAhG\n UTSzQDIP\n AjRxPwoJdtGhHvWV\n ocldfsengul\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-03-21 12:04:01.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n XCbuDGGcNKj\n cGzkrmGxc\n LZKtKnVfLqiyHqQE\n ocldfsengul\n GbanCpcZvfNDV\n lrmeCEiPxUdorzb\n gQIzTDAhG\n UTSzQDIP\n AjRxPwoJdtGhHvWV\n ocldfsengul\n\n\n\n \n
'} ---------------------- 2010-03-21 11:04:02.000 Found online debuglevel setting: 1 ---------------------- 2010-03-21 11:04:02.000 Setting debuglevel from 0 to 1 ---------------------- 2010-03-21 11:04:02.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-03-21 11:04:02.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-03-21 11:04:02.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-03-21 11:04:02.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-03-21 11:04:03.000 Pickled file is of latest revision. ---------------------- 2010-03-21 11:04:03.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-03-21 11:04:03.000 Original filter string parsed:
2.4.2 2010-03-21 12:04:01.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString XCbuDGGcNKj cGzkrmGxc LZKtKnVfLqiyHqQE ocldfsengul GbanCpcZvfNDV lrmeCEiPxUdorzb gQIzTDAhG UTSzQDIP AjRxPwoJdtGhHvWV ocldfsengul
---------------------- 2010-03-21 11:04:03.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE XCbuDGGcNKj ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = cGzkrmGxc ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE LZKtKnVfLqiyHqQE ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE ocldfsengul ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE GbanCpcZvfNDV ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE lrmeCEiPxUdorzb ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE gQIzTDAhG ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = UTSzQDIP ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = AjRxPwoJdtGhHvWV ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE ocldfsengul )) ---------------------- 2010-03-21 11:04:03.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE XCbuDGGcNKj ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = cGzkrmGxc ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE LZKtKnVfLqiyHqQE ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE ocldfsengul ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE GbanCpcZvfNDV ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE lrmeCEiPxUdorzb ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE gQIzTDAhG ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = UTSzQDIP ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = AjRxPwoJdtGhHvWV ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE ocldfsengul )) ---------------------- 2010-03-21 11:04:03.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE XCbuDGGcNKj ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = cGzkrmGxc ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE LZKtKnVfLqiyHqQE ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE ocldfsengul ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE GbanCpcZvfNDV ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE lrmeCEiPxUdorzb ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE gQIzTDAhG ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = UTSzQDIP ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = AjRxPwoJdtGhHvWV ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE ocldfsengul )) ---------------------- 2010-03-21 11:04:03.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE XCbuDGGcNKj ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = cGzkrmGxc ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE LZKtKnVfLqiyHqQE ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE ocldfsengul ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE GbanCpcZvfNDV ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE lrmeCEiPxUdorzb ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE gQIzTDAhG ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = UTSzQDIP ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = AjRxPwoJdtGhHvWV ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE ocldfsengul )) ---------------------- 2010-03-21 11:04:03.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-03-21 11:04:03.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'XCbuDGGcNKj' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'cGzkrmGxc' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'LZKtKnVfLqiyHqQE' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'ocldfsengul' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'GbanCpcZvfNDV' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'lrmeCEiPxUdorzb' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'gQIzTDAhG' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'UTSzQDIP' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'AjRxPwoJdtGhHvWV' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'ocldfsengul' ))' ---------------------- 2010-03-21 11:04:03.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "cGzkrmGxc" ---------------------- 2010-03-21 11:04:03.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-03-21 17:59:56.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-03-21 17:59:55.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString kwfqBkbQfn XGRZpIeKdKuqVJu vPEQFfoflrEYvc buy paxil from mexico CTfqXmlsFNPj KnobfniRNbvUc QrwjHZsWl LGYfEYDhwNX VhPAQazaejdz buy paxil from mexico
### ERROR LOG The Logging Results: ---------------------- 2010-03-21 16:59:56.000 Logging started. ---------------------- 2010-03-21 16:59:56.000 BioCASe protocol used. ---------------------- 2010-03-21 16:59:56.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-03-21 16:59:56.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-03-21 16:59:56.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-03-21 16:59:56.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-03-21 16:59:56.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-03-21 17:59:55.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n kwfqBkbQfn\n XGRZpIeKdKuqVJu\n vPEQFfoflrEYvc\n buy paxil from mexico\n CTfqXmlsFNPj\n KnobfniRNbvUc\n QrwjHZsWl\n LGYfEYDhwNX\n VhPAQazaejdz\n buy paxil from mexico\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-03-21 17:59:55.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n kwfqBkbQfn\n XGRZpIeKdKuqVJu\n vPEQFfoflrEYvc\n buy paxil from mexico\n CTfqXmlsFNPj\n KnobfniRNbvUc\n QrwjHZsWl\n LGYfEYDhwNX\n VhPAQazaejdz\n buy paxil from mexico\n\n\n\n \n
'} ---------------------- 2010-03-21 16:59:56.000 Found online debuglevel setting: 1 ---------------------- 2010-03-21 16:59:56.000 Setting debuglevel from 0 to 1 ---------------------- 2010-03-21 16:59:56.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-03-21 16:59:56.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-03-21 16:59:56.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-03-21 16:59:56.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-03-21 16:59:56.000 Pickled file is of latest revision. ---------------------- 2010-03-21 16:59:56.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-03-21 16:59:56.000 Original filter string parsed:
2.4.2 2010-03-21 17:59:55.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString kwfqBkbQfn XGRZpIeKdKuqVJu vPEQFfoflrEYvc buy paxil from mexico CTfqXmlsFNPj KnobfniRNbvUc QrwjHZsWl LGYfEYDhwNX VhPAQazaejdz buy paxil from mexico
---------------------- 2010-03-21 16:59:56.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE kwfqBkbQfn ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = XGRZpIeKdKuqVJu ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE vPEQFfoflrEYvc ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE buy paxil from mexico ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE CTfqXmlsFNPj ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE KnobfniRNbvUc ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE QrwjHZsWl ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = LGYfEYDhwNX ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = VhPAQazaejdz ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE buy paxil from mexico )) ---------------------- 2010-03-21 16:59:56.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE kwfqBkbQfn ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = XGRZpIeKdKuqVJu ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE vPEQFfoflrEYvc ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE buy paxil from mexico ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE CTfqXmlsFNPj ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE KnobfniRNbvUc ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE QrwjHZsWl ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = LGYfEYDhwNX ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = VhPAQazaejdz ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE buy paxil from mexico )) ---------------------- 2010-03-21 16:59:56.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE kwfqBkbQfn ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = XGRZpIeKdKuqVJu ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE vPEQFfoflrEYvc ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE buy paxil from mexico ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE CTfqXmlsFNPj ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE KnobfniRNbvUc ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE QrwjHZsWl ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = LGYfEYDhwNX ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = VhPAQazaejdz ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE buy paxil from mexico )) ---------------------- 2010-03-21 16:59:56.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE kwfqBkbQfn ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = XGRZpIeKdKuqVJu ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE vPEQFfoflrEYvc ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE buy paxil from mexico ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE CTfqXmlsFNPj ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE KnobfniRNbvUc ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE QrwjHZsWl ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = LGYfEYDhwNX ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = VhPAQazaejdz ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE buy paxil from mexico )) ---------------------- 2010-03-21 16:59:56.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-03-21 16:59:56.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'kwfqBkbQfn' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'XGRZpIeKdKuqVJu' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'vPEQFfoflrEYvc' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'buy paxil from mexico' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'CTfqXmlsFNPj' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'KnobfniRNbvUc' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'QrwjHZsWl' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'LGYfEYDhwNX' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'VhPAQazaejdz' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'buy paxil from mexico' ))' ---------------------- 2010-03-21 16:59:56.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "XGRZpIeKdKuqVJu" ---------------------- 2010-03-21 16:59:56.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-03-26 01:42:37.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-03-26 01:00:11.86 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-03-26 00:42:37.000 Logging started. ---------------------- 2010-03-26 00:42:37.000 BioCASe protocol used. ---------------------- 2010-03-26 00:42:37.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-03-26 00:42:37.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-03-26 00:42:37.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-03-26 00:42:37.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-03-26 00:42:37.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-03-26 01:00:11.86\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-03-26 01:00:11.86\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-03-26 01:00:11.86\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-03-26 00:42:37.000 Found online debuglevel setting: 1 ---------------------- 2010-03-26 00:42:37.000 Setting debuglevel from 0 to 1 ---------------------- 2010-03-26 00:42:37.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-03-26 00:42:37.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-03-26 00:42:37.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-03-26 00:42:37.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-03-26 00:42:37.000 Pickled file is of latest revision. ---------------------- 2010-03-26 00:42:37.000 Original filter string parsed:
0.1 2010-03-26 01:00:11.86 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-03-26 00:42:37.000 Filter created: None ---------------------- 2010-03-26 00:42:37.000 Compressed filter used: None ---------------------- 2010-03-26 00:42:37.000 Counting total matched records with filter=None ---------------------- 2010-03-26 00:42:37.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-03-26 00:42:37.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-04-02 01:43:18.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-04-02 01:01:15.18 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-04-01 23:43:18.000 Logging started. ---------------------- 2010-04-01 23:43:18.000 BioCASe protocol used. ---------------------- 2010-04-01 23:43:18.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-04-01 23:43:18.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-04-01 23:43:18.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-04-01 23:43:19.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-04-01 23:43:19.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-04-02 01:01:15.18\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-04-02 01:01:15.18\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-04-02 01:01:15.18\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-04-01 23:43:19.000 Found online debuglevel setting: 1 ---------------------- 2010-04-01 23:43:19.000 Setting debuglevel from 0 to 1 ---------------------- 2010-04-01 23:43:19.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-04-01 23:43:19.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-04-01 23:43:19.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-04-01 23:43:19.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-04-01 23:43:19.000 Pickled file is of latest revision. ---------------------- 2010-04-01 23:43:19.000 Original filter string parsed:
0.1 2010-04-02 01:01:15.18 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-04-01 23:43:19.000 Filter created: None ---------------------- 2010-04-01 23:43:19.000 Compressed filter used: None ---------------------- 2010-04-01 23:43:19.000 Counting total matched records with filter=None ---------------------- 2010-04-01 23:43:19.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-04-01 23:43:19.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-04-02 13:40:12.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2010-04-02 11:40:12.000 Logging started. ---------------------- 2010-04-02 11:40:12.000 BioCASe protocol used. ---------------------- 2010-04-02 11:40:12.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-04-02 11:40:12.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-04-02 11:40:12.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-04-02 11:40:12.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2010-04-02 11:40:12.000 Unknown request type! Default to capabilities. ---------------------- 2010-04-02 11:40:12.000 Destination hostname could not be determined ---------------------- 2010-04-02 11:40:12.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2010-04-02 11:40:12.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2010-04-02 11:40:12.000 Reset CMF convenience cache data hash. ---------------------- 2010-04-02 11:40:12.000 Loading CMF from the source XML file. ---------------------- 2010-04-02 11:40:12.000 CMF Version 2.1 detected. ---------------------- 2010-04-02 11:40:12.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2010-04-02 11:40:12.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2010-04-02 11:40:12.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-04-02 11:40:12.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-04-02 11:40:12.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-04-02 11:40:12.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-04-02 11:40:12.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-04-02 11:40:12.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-04-02 14:35:06.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-04-02 14:35:06.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString sMBkmeqjR BDQjQsXddLUvjfMzmzf BaGPvbGhwjsMeTtzjs wvccmm nPvdoYRYmzpgMuZT qgrzWzqnM AFCrmagSLNG YTWDcrzPvDkW sDuegxvshalIwbZY wvccmm
### ERROR LOG The Logging Results: ---------------------- 2010-04-02 12:35:06.000 Logging started. ---------------------- 2010-04-02 12:35:06.000 BioCASe protocol used. ---------------------- 2010-04-02 12:35:06.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-04-02 12:35:06.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-04-02 12:35:06.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-04-02 12:35:06.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-04-02 12:35:06.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-04-02 14:35:06.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n sMBkmeqjR\n BDQjQsXddLUvjfMzmzf\n BaGPvbGhwjsMeTtzjs\n wvccmm\n nPvdoYRYmzpgMuZT\n qgrzWzqnM\n AFCrmagSLNG\n YTWDcrzPvDkW\n sDuegxvshalIwbZY\n wvccmm\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-04-02 14:35:06.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n sMBkmeqjR\n BDQjQsXddLUvjfMzmzf\n BaGPvbGhwjsMeTtzjs\n wvccmm\n nPvdoYRYmzpgMuZT\n qgrzWzqnM\n AFCrmagSLNG\n YTWDcrzPvDkW\n sDuegxvshalIwbZY\n wvccmm\n\n\n\n \n
'} ---------------------- 2010-04-02 12:35:06.000 Found online debuglevel setting: 1 ---------------------- 2010-04-02 12:35:06.000 Setting debuglevel from 0 to 1 ---------------------- 2010-04-02 12:35:06.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-04-02 12:35:07.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-04-02 12:35:07.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-04-02 12:35:07.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-04-02 12:35:07.000 Pickled file is of latest revision. ---------------------- 2010-04-02 12:35:07.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-04-02 12:35:07.000 Original filter string parsed:
2.4.2 2010-04-02 14:35:06.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString sMBkmeqjR BDQjQsXddLUvjfMzmzf BaGPvbGhwjsMeTtzjs wvccmm nPvdoYRYmzpgMuZT qgrzWzqnM AFCrmagSLNG YTWDcrzPvDkW sDuegxvshalIwbZY wvccmm
---------------------- 2010-04-02 12:35:07.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE sMBkmeqjR ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = BDQjQsXddLUvjfMzmzf ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE BaGPvbGhwjsMeTtzjs ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE wvccmm ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE nPvdoYRYmzpgMuZT ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE qgrzWzqnM ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE AFCrmagSLNG ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = YTWDcrzPvDkW ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = sDuegxvshalIwbZY ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE wvccmm )) ---------------------- 2010-04-02 12:35:07.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE sMBkmeqjR ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = BDQjQsXddLUvjfMzmzf ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE BaGPvbGhwjsMeTtzjs ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE wvccmm ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE nPvdoYRYmzpgMuZT ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE qgrzWzqnM ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE AFCrmagSLNG ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = YTWDcrzPvDkW ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = sDuegxvshalIwbZY ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE wvccmm )) ---------------------- 2010-04-02 12:35:07.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE sMBkmeqjR ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = BDQjQsXddLUvjfMzmzf ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE BaGPvbGhwjsMeTtzjs ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE wvccmm ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE nPvdoYRYmzpgMuZT ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE qgrzWzqnM ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE AFCrmagSLNG ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = YTWDcrzPvDkW ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = sDuegxvshalIwbZY ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE wvccmm )) ---------------------- 2010-04-02 12:35:07.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE sMBkmeqjR ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = BDQjQsXddLUvjfMzmzf ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE BaGPvbGhwjsMeTtzjs ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE wvccmm ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE nPvdoYRYmzpgMuZT ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE qgrzWzqnM ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE AFCrmagSLNG ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = YTWDcrzPvDkW ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = sDuegxvshalIwbZY ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE wvccmm )) ---------------------- 2010-04-02 12:35:07.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-04-02 12:35:07.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'sMBkmeqjR' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'BDQjQsXddLUvjfMzmzf' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'BaGPvbGhwjsMeTtzjs' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'wvccmm' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'nPvdoYRYmzpgMuZT' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'qgrzWzqnM' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'AFCrmagSLNG' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'YTWDcrzPvDkW' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'sDuegxvshalIwbZY' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'wvccmm' ))' ---------------------- 2010-04-02 12:35:07.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "BDQjQsXddLUvjfMzmzf" ---------------------- 2010-04-02 12:35:07.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2010-04-04 22:08:02.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2010-04-04 20:08:02.000 Logging started. ---------------------- 2010-04-04 20:08:02.000 BioCASe protocol used. ---------------------- 2010-04-04 20:08:02.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2010-04-04 20:08:02.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2010-04-04 20:08:02.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-04-04 20:08:02.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2010-04-04 20:08:02.000 Unknown request type! Default to capabilities. ---------------------- 2010-04-04 20:08:02.000 Destination hostname could not be determined ---------------------- 2010-04-04 20:08:02.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2010-04-04 20:08:02.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-04-04 20:08:02.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-04-04 20:08:02.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2010-04-04 20:08:02.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-04-04 20:08:02.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-04-04 20:08:02.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2010-04-06 11:19:40.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2010-04-06 09:19:40.000 Logging started. ---------------------- 2010-04-06 09:19:41.000 BioCASe protocol used. ---------------------- 2010-04-06 09:19:41.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2010-04-06 09:19:41.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2010-04-06 09:19:41.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-04-06 09:19:41.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2010-04-06 09:19:41.000 Unknown request type! Default to capabilities. ---------------------- 2010-04-06 09:19:41.000 Destination hostname could not be determined ---------------------- 2010-04-06 09:19:41.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2010-04-06 09:19:41.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-04-06 09:19:41.000 Pickled file is of latest revision. ---------------------- 2010-04-06 09:19:41.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2010-04-06 09:19:41.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2010-04-06 09:19:41.000 Reset CMF convenience cache data hash. ---------------------- 2010-04-06 09:19:41.000 Loading CMF from the source XML file. ---------------------- 2010-04-06 09:19:41.000 CMF Version 2.1 detected. ---------------------- 2010-04-06 09:19:41.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2010-04-06 09:19:41.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2010-04-06 09:19:41.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-04-06 09:19:41.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-04-06 09:19:41.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-04-07 06:25:16.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-04-07 06:25:15.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString PoJtmfbJzZTCLC zfogoz@zxhzop.com LhWBjRMWXB nwppfdceg USA 18164 9Q16th zfogoz@zxhzop.com zfogoz@zxhzop.com nwppfdceg
### ERROR LOG The Logging Results: ---------------------- 2010-04-07 04:25:16.000 Logging started. ---------------------- 2010-04-07 04:25:16.000 BioCASe protocol used. ---------------------- 2010-04-07 04:25:16.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-04-07 04:25:16.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-04-07 04:25:16.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-04-07 04:25:16.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-04-07 04:25:16.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-04-07 06:25:15.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n PoJtmfbJzZTCLC\n zfogoz@zxhzop.com\n LhWBjRMWXB\n nwppfdceg\n USA\n 18164\n 9Q16th\n zfogoz@zxhzop.com\n zfogoz@zxhzop.com\n nwppfdceg\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-04-07 06:25:15.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n PoJtmfbJzZTCLC\n zfogoz@zxhzop.com\n LhWBjRMWXB\n nwppfdceg\n USA\n 18164\n 9Q16th\n zfogoz@zxhzop.com\n zfogoz@zxhzop.com\n nwppfdceg\n\n\n\n \n
'} ---------------------- 2010-04-07 04:25:16.000 Found online debuglevel setting: 1 ---------------------- 2010-04-07 04:25:16.000 Setting debuglevel from 0 to 1 ---------------------- 2010-04-07 04:25:16.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-04-07 04:25:16.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-04-07 04:25:16.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-04-07 04:25:16.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-04-07 04:25:16.000 Pickled file is of latest revision. ---------------------- 2010-04-07 04:25:16.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-04-07 04:25:16.000 Original filter string parsed:
2.4.2 2010-04-07 06:25:15.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString PoJtmfbJzZTCLC zfogoz@zxhzop.com LhWBjRMWXB nwppfdceg USA 18164 9Q16th zfogoz@zxhzop.com zfogoz@zxhzop.com nwppfdceg
---------------------- 2010-04-07 04:25:16.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE PoJtmfbJzZTCLC ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = zfogoz@zxhzop.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE LhWBjRMWXB ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE nwppfdceg ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 18164 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 9Q16th ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = zfogoz@zxhzop.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = zfogoz@zxhzop.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE nwppfdceg )) ---------------------- 2010-04-07 04:25:16.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE PoJtmfbJzZTCLC ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = zfogoz@zxhzop.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE LhWBjRMWXB ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE nwppfdceg ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 18164 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 9Q16th ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = zfogoz@zxhzop.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = zfogoz@zxhzop.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE nwppfdceg )) ---------------------- 2010-04-07 04:25:16.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE PoJtmfbJzZTCLC ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = zfogoz@zxhzop.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE LhWBjRMWXB ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE nwppfdceg ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 18164 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 9Q16th ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = zfogoz@zxhzop.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = zfogoz@zxhzop.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE nwppfdceg )) ---------------------- 2010-04-07 04:25:16.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE PoJtmfbJzZTCLC ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = zfogoz@zxhzop.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE LhWBjRMWXB ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE nwppfdceg ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 18164 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 9Q16th ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = zfogoz@zxhzop.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = zfogoz@zxhzop.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE nwppfdceg )) ---------------------- 2010-04-07 04:25:16.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-04-07 04:25:16.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'PoJtmfbJzZTCLC' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'zfogoz@zxhzop.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'LhWBjRMWXB' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'nwppfdceg' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '18164' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE '9Q16th' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'zfogoz@zxhzop.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'zfogoz@zxhzop.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'nwppfdceg' ))' ---------------------- 2010-04-07 04:25:16.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "zfogoz@zxhzop.com" ---------------------- 2010-04-07 04:25:16.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-04-08 00:37:53.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-04-08 00:37:52.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString DrzpNLextAfyzJYneNg dopriu@xeutjq.com OWakgbqWly loajoj USA 32871 rMcOCh <a href="http://dvlgivurhoec.com/">dvlgivurhoec</a>, [url=http://guixifomfybc.com/]guixifomfybc[/url], [link=http://ngdywhzlocke.com/]ngdywhzlocke[/link], http://swfjcuravwru.com/ dopriu@xeutjq.com dopriu@xeutjq.com loajoj
### ERROR LOG The Logging Results: ---------------------- 2010-04-07 22:37:53.000 Logging started. ---------------------- 2010-04-07 22:37:53.000 BioCASe protocol used. ---------------------- 2010-04-07 22:37:53.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-04-07 22:37:53.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-04-07 22:37:53.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-04-07 22:37:53.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-04-07 22:37:53.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-04-08 00:37:52.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n DrzpNLextAfyzJYneNg\n dopriu@xeutjq.com\n OWakgbqWly\n loajoj\n USA\n 32871\n rMcOCh <a href="http://dvlgivurhoec.com/">dvlgivurhoec</a>, [url=http://guixifomfybc.com/]guixifomfybc[/url], [link=http://ngdywhzlocke.com/]ngdywhzlocke[/link], http://swfjcuravwru.com/\n dopriu@xeutjq.com\n dopriu@xeutjq.com\n loajoj\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-04-08 00:37:52.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n DrzpNLextAfyzJYneNg\n dopriu@xeutjq.com\n OWakgbqWly\n loajoj\n USA\n 32871\n rMcOCh <a href="http://dvlgivurhoec.com/">dvlgivurhoec</a>, [url=http://guixifomfybc.com/]guixifomfybc[/url], [link=http://ngdywhzlocke.com/]ngdywhzlocke[/link], http://swfjcuravwru.com/\n dopriu@xeutjq.com\n dopriu@xeutjq.com\n loajoj\n\n\n\n \n
'} ---------------------- 2010-04-07 22:37:53.000 Found online debuglevel setting: 1 ---------------------- 2010-04-07 22:37:53.000 Setting debuglevel from 0 to 1 ---------------------- 2010-04-07 22:37:53.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-04-07 22:37:53.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-04-07 22:37:53.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-04-07 22:37:53.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-04-07 22:37:54.000 Pickled file is of latest revision. ---------------------- 2010-04-07 22:37:54.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-04-07 22:37:54.000 Original filter string parsed:
2.4.2 2010-04-08 00:37:52.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString DrzpNLextAfyzJYneNg dopriu@xeutjq.com OWakgbqWly loajoj USA 32871 rMcOCh <a href="http://dvlgivurhoec.com/">dvlgivurhoec</a>, [url=http://guixifomfybc.com/]guixifomfybc[/url], [link=http://ngdywhzlocke.com/]ngdywhzlocke[/link], http://swfjcuravwru.com/ dopriu@xeutjq.com dopriu@xeutjq.com loajoj
---------------------- 2010-04-07 22:37:54.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE DrzpNLextAfyzJYneNg ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = dopriu@xeutjq.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE OWakgbqWly ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE loajoj ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 32871 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE rMcOCh dvlgivurhoec, [url=http://guixifomfybc.com/]guixifomfybc[/url], [link=http://ngdywhzlocke.com/]ngdywhzlocke[/link], http://swfjcuravwru.com/ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = dopriu@xeutjq.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = dopriu@xeutjq.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE loajoj )) ---------------------- 2010-04-07 22:37:54.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE DrzpNLextAfyzJYneNg ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = dopriu@xeutjq.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE OWakgbqWly ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE loajoj ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 32871 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE rMcOCh dvlgivurhoec, [url=http://guixifomfybc.com/]guixifomfybc[/url], [link=http://ngdywhzlocke.com/]ngdywhzlocke[/link], http://swfjcuravwru.com/ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = dopriu@xeutjq.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = dopriu@xeutjq.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE loajoj )) ---------------------- 2010-04-07 22:37:54.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE DrzpNLextAfyzJYneNg ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = dopriu@xeutjq.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE OWakgbqWly ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE loajoj ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 32871 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE rMcOCh dvlgivurhoec, [url=http://guixifomfybc.com/]guixifomfybc[/url], [link=http://ngdywhzlocke.com/]ngdywhzlocke[/link], http://swfjcuravwru.com/ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = dopriu@xeutjq.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = dopriu@xeutjq.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE loajoj )) ---------------------- 2010-04-07 22:37:54.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE DrzpNLextAfyzJYneNg ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = dopriu@xeutjq.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE OWakgbqWly ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE loajoj ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 32871 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE rMcOCh dvlgivurhoec, [url=http://guixifomfybc.com/]guixifomfybc[/url], [link=http://ngdywhzlocke.com/]ngdywhzlocke[/link], http://swfjcuravwru.com/ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = dopriu@xeutjq.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = dopriu@xeutjq.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE loajoj )) ---------------------- 2010-04-07 22:37:54.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-04-07 22:37:54.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'DrzpNLextAfyzJYneNg' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'dopriu@xeutjq.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'OWakgbqWly' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'loajoj' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '32871' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'rMcOCh dvlgivurhoec, [url=http://guixifomfybc.com/]guixifomfybc[/url], [link=http://ngdywhzlocke.com/]ngdywhzlocke[/link], http://swfjcuravwru.com/' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'dopriu@xeutjq.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'dopriu@xeutjq.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'loajoj' ))' ---------------------- 2010-04-07 22:37:54.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "dopriu@xeutjq.com" ---------------------- 2010-04-07 22:37:54.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-04-09 01:42:51.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-04-09 01:01:09.48 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-04-08 23:42:51.000 Logging started. ---------------------- 2010-04-08 23:42:51.000 BioCASe protocol used. ---------------------- 2010-04-08 23:42:51.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-04-08 23:42:51.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-04-08 23:42:51.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-04-08 23:42:51.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-04-08 23:42:51.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-04-09 01:01:09.48\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-04-09 01:01:09.48\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-04-09 01:01:09.48\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-04-08 23:42:51.000 Found online debuglevel setting: 1 ---------------------- 2010-04-08 23:42:51.000 Setting debuglevel from 0 to 1 ---------------------- 2010-04-08 23:42:51.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-04-08 23:42:51.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-04-08 23:42:51.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-04-08 23:42:51.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-04-08 23:42:52.000 Pickled file is of latest revision. ---------------------- 2010-04-08 23:42:52.000 Original filter string parsed:
0.1 2010-04-09 01:01:09.48 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-04-08 23:42:52.000 Filter created: None ---------------------- 2010-04-08 23:42:52.000 Compressed filter used: None ---------------------- 2010-04-08 23:42:52.000 Counting total matched records with filter=None ---------------------- 2010-04-08 23:42:52.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-04-08 23:42:52.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-04-16 01:43:10.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-04-16 01:01:49.79 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-04-15 23:43:10.000 Logging started. ---------------------- 2010-04-15 23:43:10.000 BioCASe protocol used. ---------------------- 2010-04-15 23:43:10.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-04-15 23:43:10.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-04-15 23:43:10.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-04-15 23:43:10.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-04-15 23:43:10.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-04-16 01:01:49.79\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-04-16 01:01:49.79\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-04-16 01:01:49.79\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-04-15 23:43:10.000 Found online debuglevel setting: 1 ---------------------- 2010-04-15 23:43:10.000 Setting debuglevel from 0 to 1 ---------------------- 2010-04-15 23:43:10.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-04-15 23:43:10.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-04-15 23:43:10.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-04-15 23:43:10.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-04-15 23:43:10.000 Pickled file is of latest revision. ---------------------- 2010-04-15 23:43:10.000 Original filter string parsed:
0.1 2010-04-16 01:01:49.79 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-04-15 23:43:10.000 Filter created: None ---------------------- 2010-04-15 23:43:10.000 Compressed filter used: None ---------------------- 2010-04-15 23:43:10.000 Counting total matched records with filter=None ---------------------- 2010-04-15 23:43:10.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-04-15 23:43:10.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-04-18 03:35:14.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2010-04-18 01:35:14.000 Logging started. ---------------------- 2010-04-18 01:35:14.000 BioCASe protocol used. ---------------------- 2010-04-18 01:35:14.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-04-18 01:35:14.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-04-18 01:35:14.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-04-18 01:35:15.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2010-04-18 01:35:15.000 Unknown request type! Default to capabilities. ---------------------- 2010-04-18 01:35:15.000 Destination hostname could not be determined ---------------------- 2010-04-18 01:35:15.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2010-04-18 01:35:15.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2010-04-18 01:35:15.000 Reset CMF convenience cache data hash. ---------------------- 2010-04-18 01:35:15.000 Loading CMF from the source XML file. ---------------------- 2010-04-18 01:35:15.000 CMF Version 2.1 detected. ---------------------- 2010-04-18 01:35:15.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2010-04-18 01:35:15.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2010-04-18 01:35:15.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-04-18 01:35:15.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-04-18 01:35:15.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-04-18 01:35:15.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-04-18 01:35:15.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-04-18 01:35:15.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2010-04-20 21:26:35.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2010-04-20 19:26:35.000 Logging started. ---------------------- 2010-04-20 19:26:35.000 BioCASe protocol used. ---------------------- 2010-04-20 19:26:35.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2010-04-20 19:26:35.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2010-04-20 19:26:35.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-04-20 19:26:35.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2010-04-20 19:26:35.000 Unknown request type! Default to capabilities. ---------------------- 2010-04-20 19:26:35.000 Destination hostname could not be determined ---------------------- 2010-04-20 19:26:35.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2010-04-20 19:26:35.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-04-20 19:26:35.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-04-20 19:26:35.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2010-04-20 19:26:35.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-04-20 19:26:35.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-04-20 19:26:35.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-04-23 01:44:58.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-04-23 01:03:59.33 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-04-22 23:44:58.000 Logging started. ---------------------- 2010-04-22 23:44:58.000 BioCASe protocol used. ---------------------- 2010-04-22 23:44:58.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-04-22 23:44:58.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-04-22 23:44:58.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-04-22 23:44:58.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-04-22 23:44:58.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-04-23 01:03:59.33\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-04-23 01:03:59.33\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-04-23 01:03:59.33\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-04-22 23:44:58.000 Found online debuglevel setting: 1 ---------------------- 2010-04-22 23:44:58.000 Setting debuglevel from 0 to 1 ---------------------- 2010-04-22 23:44:58.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-04-22 23:44:58.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-04-22 23:44:58.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-04-22 23:44:58.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-04-22 23:44:58.000 Pickled file is of latest revision. ---------------------- 2010-04-22 23:44:58.000 Original filter string parsed:
0.1 2010-04-23 01:03:59.33 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-04-22 23:44:58.000 Filter created: None ---------------------- 2010-04-22 23:44:58.000 Compressed filter used: None ---------------------- 2010-04-22 23:44:58.000 Counting total matched records with filter=None ---------------------- 2010-04-22 23:44:58.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-04-22 23:44:58.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-04-30 01:38:24.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-04-30 00:57:46.68 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-04-29 23:38:24.000 Logging started. ---------------------- 2010-04-29 23:38:24.000 BioCASe protocol used. ---------------------- 2010-04-29 23:38:24.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-04-29 23:38:24.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-04-29 23:38:24.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-04-29 23:38:24.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-04-29 23:38:24.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-04-30 00:57:46.68\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-04-30 00:57:46.68\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-04-30 00:57:46.68\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-04-29 23:38:24.000 Found online debuglevel setting: 1 ---------------------- 2010-04-29 23:38:24.000 Setting debuglevel from 0 to 1 ---------------------- 2010-04-29 23:38:24.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-04-29 23:38:24.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-04-29 23:38:24.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-04-29 23:38:24.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-04-29 23:38:24.000 Pickled file is of latest revision. ---------------------- 2010-04-29 23:38:24.000 Original filter string parsed:
0.1 2010-04-30 00:57:46.68 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-04-29 23:38:24.000 Filter created: None ---------------------- 2010-04-29 23:38:24.000 Compressed filter used: None ---------------------- 2010-04-29 23:38:24.000 Counting total matched records with filter=None ---------------------- 2010-04-29 23:38:24.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-04-29 23:38:24.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-05-01 15:27:07.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-05-01 15:27:07.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString nDeIRerwwIyIYW SJPmXdytUmMbMzOQX vVaHCYuI znakomstva mDNAHtzxpvQoqaA LpYqmumJQBSEJsF USJRWVBLNwjmth sRoGkeBBGA VNaWZFiBBiQ znakomstva
### ERROR LOG The Logging Results: ---------------------- 2010-05-01 13:27:07.000 Logging started. ---------------------- 2010-05-01 13:27:07.000 BioCASe protocol used. ---------------------- 2010-05-01 13:27:07.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-05-01 13:27:07.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-05-01 13:27:07.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-05-01 13:27:07.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-05-01 13:27:07.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-05-01 15:27:07.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n nDeIRerwwIyIYW\n SJPmXdytUmMbMzOQX\n vVaHCYuI\n znakomstva\n mDNAHtzxpvQoqaA\n LpYqmumJQBSEJsF\n USJRWVBLNwjmth\n sRoGkeBBGA\n VNaWZFiBBiQ\n znakomstva\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-05-01 15:27:07.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n nDeIRerwwIyIYW\n SJPmXdytUmMbMzOQX\n vVaHCYuI\n znakomstva\n mDNAHtzxpvQoqaA\n LpYqmumJQBSEJsF\n USJRWVBLNwjmth\n sRoGkeBBGA\n VNaWZFiBBiQ\n znakomstva\n\n\n\n \n
'} ---------------------- 2010-05-01 13:27:07.000 Found online debuglevel setting: 1 ---------------------- 2010-05-01 13:27:07.000 Setting debuglevel from 0 to 1 ---------------------- 2010-05-01 13:27:07.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-05-01 13:27:07.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-05-01 13:27:07.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-05-01 13:27:07.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-05-01 13:27:08.000 Pickled file is of latest revision. ---------------------- 2010-05-01 13:27:08.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-05-01 13:27:08.000 Original filter string parsed:
2.4.2 2010-05-01 15:27:07.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString nDeIRerwwIyIYW SJPmXdytUmMbMzOQX vVaHCYuI znakomstva mDNAHtzxpvQoqaA LpYqmumJQBSEJsF USJRWVBLNwjmth sRoGkeBBGA VNaWZFiBBiQ znakomstva
---------------------- 2010-05-01 13:27:08.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE nDeIRerwwIyIYW ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = SJPmXdytUmMbMzOQX ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE vVaHCYuI ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE znakomstva ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE mDNAHtzxpvQoqaA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE LpYqmumJQBSEJsF ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USJRWVBLNwjmth ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = sRoGkeBBGA ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = VNaWZFiBBiQ ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE znakomstva )) ---------------------- 2010-05-01 13:27:08.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE nDeIRerwwIyIYW ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = SJPmXdytUmMbMzOQX ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE vVaHCYuI ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE znakomstva ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE mDNAHtzxpvQoqaA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE LpYqmumJQBSEJsF ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USJRWVBLNwjmth ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = sRoGkeBBGA ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = VNaWZFiBBiQ ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE znakomstva )) ---------------------- 2010-05-01 13:27:08.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE nDeIRerwwIyIYW ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = SJPmXdytUmMbMzOQX ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE vVaHCYuI ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE znakomstva ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE mDNAHtzxpvQoqaA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE LpYqmumJQBSEJsF ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USJRWVBLNwjmth ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = sRoGkeBBGA ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = VNaWZFiBBiQ ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE znakomstva )) ---------------------- 2010-05-01 13:27:08.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE nDeIRerwwIyIYW ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = SJPmXdytUmMbMzOQX ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE vVaHCYuI ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE znakomstva ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE mDNAHtzxpvQoqaA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE LpYqmumJQBSEJsF ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USJRWVBLNwjmth ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = sRoGkeBBGA ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = VNaWZFiBBiQ ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE znakomstva )) ---------------------- 2010-05-01 13:27:08.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-05-01 13:27:08.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'nDeIRerwwIyIYW' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'SJPmXdytUmMbMzOQX' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'vVaHCYuI' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'znakomstva' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'mDNAHtzxpvQoqaA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'LpYqmumJQBSEJsF' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'USJRWVBLNwjmth' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'sRoGkeBBGA' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'VNaWZFiBBiQ' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'znakomstva' ))' ---------------------- 2010-05-01 13:27:08.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "SJPmXdytUmMbMzOQX" ---------------------- 2010-05-01 13:27:08.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-05-03 23:09:07.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-05-03 23:09:06.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString cZOWkuEwWCakHZh efhlbtFQ alrkqPOhWuJJn qaqcozhzkb PRNSSlAVpBjPwVyqfT ARENNbSvm DNyKFYEGG TyZoeFiyUwIP kDMgglxftClNcUBZ qaqcozhzkb
### ERROR LOG The Logging Results: ---------------------- 2010-05-03 21:09:07.000 Logging started. ---------------------- 2010-05-03 21:09:07.000 BioCASe protocol used. ---------------------- 2010-05-03 21:09:07.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-05-03 21:09:07.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-05-03 21:09:07.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-05-03 21:09:07.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-05-03 21:09:07.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-05-03 23:09:06.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n cZOWkuEwWCakHZh\n efhlbtFQ\n alrkqPOhWuJJn\n qaqcozhzkb\n PRNSSlAVpBjPwVyqfT\n ARENNbSvm\n DNyKFYEGG\n TyZoeFiyUwIP\n kDMgglxftClNcUBZ\n qaqcozhzkb\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-05-03 23:09:06.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n cZOWkuEwWCakHZh\n efhlbtFQ\n alrkqPOhWuJJn\n qaqcozhzkb\n PRNSSlAVpBjPwVyqfT\n ARENNbSvm\n DNyKFYEGG\n TyZoeFiyUwIP\n kDMgglxftClNcUBZ\n qaqcozhzkb\n\n\n\n \n
'} ---------------------- 2010-05-03 21:09:07.000 Found online debuglevel setting: 1 ---------------------- 2010-05-03 21:09:07.000 Setting debuglevel from 0 to 1 ---------------------- 2010-05-03 21:09:07.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-05-03 21:09:07.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-05-03 21:09:07.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-05-03 21:09:07.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-05-03 21:09:08.000 Pickled file is of latest revision. ---------------------- 2010-05-03 21:09:08.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-05-03 21:09:08.000 Original filter string parsed:
2.4.2 2010-05-03 23:09:06.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString cZOWkuEwWCakHZh efhlbtFQ alrkqPOhWuJJn qaqcozhzkb PRNSSlAVpBjPwVyqfT ARENNbSvm DNyKFYEGG TyZoeFiyUwIP kDMgglxftClNcUBZ qaqcozhzkb
---------------------- 2010-05-03 21:09:08.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE cZOWkuEwWCakHZh ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = efhlbtFQ ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE alrkqPOhWuJJn ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE qaqcozhzkb ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE PRNSSlAVpBjPwVyqfT ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE ARENNbSvm ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE DNyKFYEGG ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = TyZoeFiyUwIP ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = kDMgglxftClNcUBZ ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE qaqcozhzkb )) ---------------------- 2010-05-03 21:09:08.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE cZOWkuEwWCakHZh ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = efhlbtFQ ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE alrkqPOhWuJJn ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE qaqcozhzkb ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE PRNSSlAVpBjPwVyqfT ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE ARENNbSvm ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE DNyKFYEGG ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = TyZoeFiyUwIP ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = kDMgglxftClNcUBZ ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE qaqcozhzkb )) ---------------------- 2010-05-03 21:09:08.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE cZOWkuEwWCakHZh ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = efhlbtFQ ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE alrkqPOhWuJJn ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE qaqcozhzkb ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE PRNSSlAVpBjPwVyqfT ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE ARENNbSvm ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE DNyKFYEGG ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = TyZoeFiyUwIP ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = kDMgglxftClNcUBZ ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE qaqcozhzkb )) ---------------------- 2010-05-03 21:09:08.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE cZOWkuEwWCakHZh ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = efhlbtFQ ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE alrkqPOhWuJJn ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE qaqcozhzkb ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE PRNSSlAVpBjPwVyqfT ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE ARENNbSvm ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE DNyKFYEGG ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = TyZoeFiyUwIP ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = kDMgglxftClNcUBZ ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE qaqcozhzkb )) ---------------------- 2010-05-03 21:09:08.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-05-03 21:09:08.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'cZOWkuEwWCakHZh' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'efhlbtFQ' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'alrkqPOhWuJJn' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'qaqcozhzkb' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'PRNSSlAVpBjPwVyqfT' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'ARENNbSvm' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'DNyKFYEGG' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'TyZoeFiyUwIP' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'kDMgglxftClNcUBZ' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'qaqcozhzkb' ))' ---------------------- 2010-05-03 21:09:08.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "efhlbtFQ" ---------------------- 2010-05-03 21:09:08.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-05-05 15:32:22.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-05-05 15:32:22.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString nQupvpfeAcuhogSbUW xutruim@fhum46.com zNwyQbimaPBmVzLvOFi znakomstva USA 190801 a1HG4 xutruim@fhum46.com xutruim@fhum46.com znakomstva
### ERROR LOG The Logging Results: ---------------------- 2010-05-05 13:32:22.000 Logging started. ---------------------- 2010-05-05 13:32:22.000 BioCASe protocol used. ---------------------- 2010-05-05 13:32:22.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-05-05 13:32:22.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-05-05 13:32:22.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-05-05 13:32:22.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-05-05 13:32:22.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-05-05 15:32:22.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n nQupvpfeAcuhogSbUW\n xutruim@fhum46.com\n zNwyQbimaPBmVzLvOFi\n znakomstva\n USA\n 190801\n a1HG4\n xutruim@fhum46.com\n xutruim@fhum46.com\n znakomstva\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-05-05 15:32:22.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n nQupvpfeAcuhogSbUW\n xutruim@fhum46.com\n zNwyQbimaPBmVzLvOFi\n znakomstva\n USA\n 190801\n a1HG4\n xutruim@fhum46.com\n xutruim@fhum46.com\n znakomstva\n\n\n\n \n
'} ---------------------- 2010-05-05 13:32:22.000 Found online debuglevel setting: 1 ---------------------- 2010-05-05 13:32:22.000 Setting debuglevel from 0 to 1 ---------------------- 2010-05-05 13:32:22.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-05-05 13:32:22.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-05-05 13:32:22.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-05-05 13:32:22.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-05-05 13:32:23.000 Pickled file is of latest revision. ---------------------- 2010-05-05 13:32:23.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-05-05 13:32:23.000 Original filter string parsed:
2.4.2 2010-05-05 15:32:22.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString nQupvpfeAcuhogSbUW xutruim@fhum46.com zNwyQbimaPBmVzLvOFi znakomstva USA 190801 a1HG4 xutruim@fhum46.com xutruim@fhum46.com znakomstva
---------------------- 2010-05-05 13:32:23.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE nQupvpfeAcuhogSbUW ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = xutruim@fhum46.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE zNwyQbimaPBmVzLvOFi ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE znakomstva ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 190801 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE a1HG4 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = xutruim@fhum46.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = xutruim@fhum46.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE znakomstva )) ---------------------- 2010-05-05 13:32:23.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE nQupvpfeAcuhogSbUW ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = xutruim@fhum46.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE zNwyQbimaPBmVzLvOFi ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE znakomstva ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 190801 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE a1HG4 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = xutruim@fhum46.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = xutruim@fhum46.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE znakomstva )) ---------------------- 2010-05-05 13:32:23.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE nQupvpfeAcuhogSbUW ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = xutruim@fhum46.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE zNwyQbimaPBmVzLvOFi ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE znakomstva ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 190801 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE a1HG4 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = xutruim@fhum46.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = xutruim@fhum46.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE znakomstva )) ---------------------- 2010-05-05 13:32:23.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE nQupvpfeAcuhogSbUW ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = xutruim@fhum46.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE zNwyQbimaPBmVzLvOFi ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE znakomstva ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 190801 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE a1HG4 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = xutruim@fhum46.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = xutruim@fhum46.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE znakomstva )) ---------------------- 2010-05-05 13:32:23.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-05-05 13:32:23.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'nQupvpfeAcuhogSbUW' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'xutruim@fhum46.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'zNwyQbimaPBmVzLvOFi' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'znakomstva' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '190801' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'a1HG4' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'xutruim@fhum46.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'xutruim@fhum46.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'znakomstva' ))' ---------------------- 2010-05-05 13:32:23.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "xutruim@fhum46.com" ---------------------- 2010-05-05 13:32:23.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-05-06 02:12:49.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-05-06 02:12:48.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA zoqapk@gcbqeu.com USA nzjlfe USA 2625 uEINA zoqapk@gcbqeu.com nzjlfe nzjlfe
### ERROR LOG The Logging Results: ---------------------- 2010-05-06 00:12:49.000 Logging started. ---------------------- 2010-05-06 00:12:49.000 BioCASe protocol used. ---------------------- 2010-05-06 00:12:49.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-05-06 00:12:49.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-05-06 00:12:49.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-05-06 00:12:49.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-05-06 00:12:49.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-05-06 02:12:48.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n zoqapk@gcbqeu.com\n USA\n nzjlfe\n USA\n 2625\n uEINA\n zoqapk@gcbqeu.com\n nzjlfe\n nzjlfe\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-05-06 02:12:48.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n zoqapk@gcbqeu.com\n USA\n nzjlfe\n USA\n 2625\n uEINA\n zoqapk@gcbqeu.com\n nzjlfe\n nzjlfe\n\n\n\n \n
'} ---------------------- 2010-05-06 00:12:49.000 Found online debuglevel setting: 1 ---------------------- 2010-05-06 00:12:49.000 Setting debuglevel from 0 to 1 ---------------------- 2010-05-06 00:12:49.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-05-06 00:12:49.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-05-06 00:12:49.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-05-06 00:12:49.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-05-06 00:12:49.000 Pickled file is of latest revision. ---------------------- 2010-05-06 00:12:49.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-05-06 00:12:49.000 Original filter string parsed:
2.4.2 2010-05-06 02:12:48.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA zoqapk@gcbqeu.com USA nzjlfe USA 2625 uEINA zoqapk@gcbqeu.com nzjlfe nzjlfe
---------------------- 2010-05-06 00:12:49.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = zoqapk@gcbqeu.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE nzjlfe ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 2625 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE uEINA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = zoqapk@gcbqeu.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = nzjlfe ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE nzjlfe )) ---------------------- 2010-05-06 00:12:49.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = zoqapk@gcbqeu.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE nzjlfe ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 2625 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE uEINA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = zoqapk@gcbqeu.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = nzjlfe ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE nzjlfe )) ---------------------- 2010-05-06 00:12:49.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = zoqapk@gcbqeu.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE nzjlfe ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 2625 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE uEINA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = zoqapk@gcbqeu.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = nzjlfe ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE nzjlfe )) ---------------------- 2010-05-06 00:12:49.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = zoqapk@gcbqeu.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE nzjlfe ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 2625 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE uEINA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = zoqapk@gcbqeu.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = nzjlfe ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE nzjlfe )) ---------------------- 2010-05-06 00:12:49.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-05-06 00:12:49.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'zoqapk@gcbqeu.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'nzjlfe' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '2625' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'uEINA' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'zoqapk@gcbqeu.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'nzjlfe' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'nzjlfe' ))' ---------------------- 2010-05-06 00:12:49.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "zoqapk@gcbqeu.com" ---------------------- 2010-05-06 00:12:50.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-05-07 01:38:31.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-05-07 00:58:15.58 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-05-06 23:38:31.000 Logging started. ---------------------- 2010-05-06 23:38:31.000 BioCASe protocol used. ---------------------- 2010-05-06 23:38:31.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-05-06 23:38:31.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-05-06 23:38:31.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-05-06 23:38:31.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-05-06 23:38:31.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-05-07 00:58:15.58\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-05-07 00:58:15.58\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-05-07 00:58:15.58\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-05-06 23:38:31.000 Found online debuglevel setting: 1 ---------------------- 2010-05-06 23:38:31.000 Setting debuglevel from 0 to 1 ---------------------- 2010-05-06 23:38:31.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-05-06 23:38:31.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-05-06 23:38:31.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-05-06 23:38:31.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-05-06 23:38:32.000 Pickled file is of latest revision. ---------------------- 2010-05-06 23:38:32.000 Original filter string parsed:
0.1 2010-05-07 00:58:15.58 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-05-06 23:38:32.000 Filter created: None ---------------------- 2010-05-06 23:38:32.000 Compressed filter used: None ---------------------- 2010-05-06 23:38:32.000 Counting total matched records with filter=None ---------------------- 2010-05-06 23:38:32.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-05-06 23:38:32.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2010-05-09 02:00:06.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2010-05-09 00:00:06.000 Logging started. ---------------------- 2010-05-09 00:00:06.000 BioCASe protocol used. ---------------------- 2010-05-09 00:00:06.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2010-05-09 00:00:06.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2010-05-09 00:00:06.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-05-09 00:00:06.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2010-05-09 00:00:06.000 Unknown request type! Default to capabilities. ---------------------- 2010-05-09 00:00:06.000 Destination hostname could not be determined ---------------------- 2010-05-09 00:00:06.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2010-05-09 00:00:06.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-05-09 00:00:06.000 Pickled file is of latest revision. ---------------------- 2010-05-09 00:00:06.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2010-05-09 00:00:06.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2010-05-09 00:00:06.000 Reset CMF convenience cache data hash. ---------------------- 2010-05-09 00:00:06.000 Loading CMF from the source XML file. ---------------------- 2010-05-09 00:00:06.000 CMF Version 2.1 detected. ---------------------- 2010-05-09 00:00:06.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2010-05-09 00:00:06.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2010-05-09 00:00:06.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-05-09 00:00:06.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-05-09 00:00:06.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-05-14 01:37:47.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-05-14 00:57:53.83 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-05-13 23:37:47.000 Logging started. ---------------------- 2010-05-13 23:37:47.000 BioCASe protocol used. ---------------------- 2010-05-13 23:37:47.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-05-13 23:37:47.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-05-13 23:37:47.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-05-13 23:37:48.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-05-13 23:37:48.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-05-14 00:57:53.83\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-05-14 00:57:53.83\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-05-14 00:57:53.83\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-05-13 23:37:48.000 Found online debuglevel setting: 1 ---------------------- 2010-05-13 23:37:48.000 Setting debuglevel from 0 to 1 ---------------------- 2010-05-13 23:37:48.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-05-13 23:37:48.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-05-13 23:37:48.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-05-13 23:37:48.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-05-13 23:37:48.000 Pickled file is of latest revision. ---------------------- 2010-05-13 23:37:48.000 Original filter string parsed:
0.1 2010-05-14 00:57:53.83 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-05-13 23:37:48.000 Filter created: None ---------------------- 2010-05-13 23:37:48.000 Compressed filter used: None ---------------------- 2010-05-13 23:37:48.000 Counting total matched records with filter=None ---------------------- 2010-05-13 23:37:48.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-05-13 23:37:48.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-05-20 20:19:23.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2010-05-20 18:19:23.000 Logging started. ---------------------- 2010-05-20 18:19:23.000 BioCASe protocol used. ---------------------- 2010-05-20 18:19:23.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-05-20 18:19:23.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-05-20 18:19:23.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-05-20 18:19:24.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2010-05-20 18:19:24.000 Unknown request type! Default to capabilities. ---------------------- 2010-05-20 18:19:24.000 Destination hostname could not be determined ---------------------- 2010-05-20 18:19:24.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2010-05-20 18:19:24.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2010-05-20 18:19:24.000 Reset CMF convenience cache data hash. ---------------------- 2010-05-20 18:19:24.000 Loading CMF from the source XML file. ---------------------- 2010-05-20 18:19:24.000 CMF Version 2.1 detected. ---------------------- 2010-05-20 18:19:24.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2010-05-20 18:19:24.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2010-05-20 18:19:24.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-05-20 18:19:24.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-05-20 18:19:24.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-05-20 18:19:24.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-05-20 18:19:24.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-05-20 18:19:24.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-05-21 01:37:26.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-05-21 00:57:54.38 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-05-20 23:37:26.000 Logging started. ---------------------- 2010-05-20 23:37:26.000 BioCASe protocol used. ---------------------- 2010-05-20 23:37:26.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-05-20 23:37:26.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-05-20 23:37:26.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-05-20 23:37:26.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-05-20 23:37:26.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-05-21 00:57:54.38\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-05-21 00:57:54.38\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-05-21 00:57:54.38\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-05-20 23:37:26.000 Found online debuglevel setting: 1 ---------------------- 2010-05-20 23:37:26.000 Setting debuglevel from 0 to 1 ---------------------- 2010-05-20 23:37:26.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-05-20 23:37:26.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-05-20 23:37:26.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-05-20 23:37:26.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-05-20 23:37:26.000 Pickled file is of latest revision. ---------------------- 2010-05-20 23:37:26.000 Original filter string parsed:
0.1 2010-05-21 00:57:54.38 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-05-20 23:37:26.000 Filter created: None ---------------------- 2010-05-20 23:37:26.000 Compressed filter used: None ---------------------- 2010-05-20 23:37:26.000 Counting total matched records with filter=None ---------------------- 2010-05-20 23:37:27.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-05-20 23:37:27.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2010-05-21 22:28:34.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2010-05-21 20:28:34.000 Logging started. ---------------------- 2010-05-21 20:28:35.000 BioCASe protocol used. ---------------------- 2010-05-21 20:28:35.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2010-05-21 20:28:35.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2010-05-21 20:28:35.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-05-21 20:28:35.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2010-05-21 20:28:35.000 Unknown request type! Default to capabilities. ---------------------- 2010-05-21 20:28:35.000 Destination hostname could not be determined ---------------------- 2010-05-21 20:28:35.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2010-05-21 20:28:35.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-05-21 20:28:35.000 Pickled file is of latest revision. ---------------------- 2010-05-21 20:28:35.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2010-05-21 20:28:35.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2010-05-21 20:28:35.000 Reset CMF convenience cache data hash. ---------------------- 2010-05-21 20:28:35.000 Loading CMF from the source XML file. ---------------------- 2010-05-21 20:28:35.000 CMF Version 2.1 detected. ---------------------- 2010-05-21 20:28:35.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2010-05-21 20:28:35.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2010-05-21 20:28:35.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-05-21 20:28:35.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-05-21 20:28:35.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2010-05-21 23:01:33.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2010-05-21 21:01:33.000 Logging started. ---------------------- 2010-05-21 21:01:33.000 BioCASe protocol used. ---------------------- 2010-05-21 21:01:33.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2010-05-21 21:01:33.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2010-05-21 21:01:33.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-05-21 21:01:34.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2010-05-21 21:01:34.000 Unknown request type! Default to capabilities. ---------------------- 2010-05-21 21:01:34.000 Destination hostname could not be determined ---------------------- 2010-05-21 21:01:34.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2010-05-21 21:01:34.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-05-21 21:01:34.000 Pickled file is of latest revision. ---------------------- 2010-05-21 21:01:34.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2010-05-21 21:01:34.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2010-05-21 21:01:34.000 Reset CMF convenience cache data hash. ---------------------- 2010-05-21 21:01:34.000 Loading CMF from the source XML file. ---------------------- 2010-05-21 21:01:34.000 CMF Version 2.1 detected. ---------------------- 2010-05-21 21:01:34.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2010-05-21 21:01:34.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2010-05-21 21:01:34.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-05-21 21:01:34.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-05-21 21:01:34.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2010-05-21 23:07:48.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2010-05-21 21:07:48.000 Logging started. ---------------------- 2010-05-21 21:07:48.000 BioCASe protocol used. ---------------------- 2010-05-21 21:07:48.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2010-05-21 21:07:48.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2010-05-21 21:07:48.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-05-21 21:07:48.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2010-05-21 21:07:48.000 Unknown request type! Default to capabilities. ---------------------- 2010-05-21 21:07:48.000 Destination hostname could not be determined ---------------------- 2010-05-21 21:07:48.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2010-05-21 21:07:48.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-05-21 21:07:48.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-05-21 21:07:48.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2010-05-21 21:07:48.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-05-21 21:07:48.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-05-21 21:07:48.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-05-21 23:10:26.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2010-05-21 21:10:26.000 Logging started. ---------------------- 2010-05-21 21:10:26.000 BioCASe protocol used. ---------------------- 2010-05-21 21:10:26.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-05-21 21:10:26.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-05-21 21:10:26.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-05-21 21:10:26.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2010-05-21 21:10:26.000 Unknown request type! Default to capabilities. ---------------------- 2010-05-21 21:10:26.000 Destination hostname could not be determined ---------------------- 2010-05-21 21:10:26.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2010-05-21 21:10:26.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2010-05-21 21:10:26.000 Reset CMF convenience cache data hash. ---------------------- 2010-05-21 21:10:26.000 Loading CMF from the source XML file. ---------------------- 2010-05-21 21:10:26.000 CMF Version 2.1 detected. ---------------------- 2010-05-21 21:10:26.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2010-05-21 21:10:26.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2010-05-21 21:10:26.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-05-21 21:10:26.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-05-21 21:10:26.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-05-21 21:10:26.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-05-21 21:10:26.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-05-21 21:10:26.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2010-05-21 23:24:55.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2010-05-21 21:24:55.000 Logging started. ---------------------- 2010-05-21 21:24:55.000 BioCASe protocol used. ---------------------- 2010-05-21 21:24:55.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2010-05-21 21:24:55.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2010-05-21 21:24:55.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-05-21 21:24:55.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2010-05-21 21:24:55.000 Unknown request type! Default to capabilities. ---------------------- 2010-05-21 21:24:55.000 Destination hostname could not be determined ---------------------- 2010-05-21 21:24:55.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2010-05-21 21:24:55.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-05-21 21:24:55.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-05-21 21:24:55.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2010-05-21 21:24:55.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-05-21 21:24:55.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-05-21 21:24:55.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-05-21 23:28:52.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2010-05-21 21:28:52.000 Logging started. ---------------------- 2010-05-21 21:28:52.000 BioCASe protocol used. ---------------------- 2010-05-21 21:28:52.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-05-21 21:28:52.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-05-21 21:28:52.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-05-21 21:28:52.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2010-05-21 21:28:52.000 Unknown request type! Default to capabilities. ---------------------- 2010-05-21 21:28:52.000 Destination hostname could not be determined ---------------------- 2010-05-21 21:28:52.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2010-05-21 21:28:52.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2010-05-21 21:28:52.000 Reset CMF convenience cache data hash. ---------------------- 2010-05-21 21:28:52.000 Loading CMF from the source XML file. ---------------------- 2010-05-21 21:28:52.000 CMF Version 2.1 detected. ---------------------- 2010-05-21 21:28:53.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2010-05-21 21:28:53.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2010-05-21 21:28:53.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-05-21 21:28:53.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-05-21 21:28:53.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-05-21 21:28:53.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-05-21 21:28:53.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-05-21 21:28:53.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2010-05-22 20:36:47.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2010-05-22 18:36:47.000 Logging started. ---------------------- 2010-05-22 18:36:47.000 BioCASe protocol used. ---------------------- 2010-05-22 18:36:47.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2010-05-22 18:36:47.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2010-05-22 18:36:47.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-05-22 18:36:47.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2010-05-22 18:36:47.000 Unknown request type! Default to capabilities. ---------------------- 2010-05-22 18:36:47.000 Destination hostname could not be determined ---------------------- 2010-05-22 18:36:47.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2010-05-22 18:36:47.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-05-22 18:36:47.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-05-22 18:36:47.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2010-05-22 18:36:47.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-05-22 18:36:47.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-05-22 18:36:47.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-05-24 05:53:35.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2010-05-24 03:53:35.000 Logging started. ---------------------- 2010-05-24 03:53:35.000 BioCASe protocol used. ---------------------- 2010-05-24 03:53:35.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-05-24 03:53:35.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-05-24 03:53:35.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-05-24 03:53:35.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2010-05-24 03:53:35.000 Unknown request type! Default to capabilities. ---------------------- 2010-05-24 03:53:35.000 Destination hostname could not be determined ---------------------- 2010-05-24 03:53:35.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2010-05-24 03:53:35.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2010-05-24 03:53:35.000 Reset CMF convenience cache data hash. ---------------------- 2010-05-24 03:53:35.000 Loading CMF from the source XML file. ---------------------- 2010-05-24 03:53:35.000 CMF Version 2.1 detected. ---------------------- 2010-05-24 03:53:35.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2010-05-24 03:53:35.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2010-05-24 03:53:35.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-05-24 03:53:35.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-05-24 03:53:35.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-05-24 03:53:35.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-05-24 03:53:35.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-05-24 03:53:35.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2010-05-24 06:39:56.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2010-05-24 04:39:56.000 Logging started. ---------------------- 2010-05-24 04:39:56.000 BioCASe protocol used. ---------------------- 2010-05-24 04:39:56.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2010-05-24 04:39:56.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2010-05-24 04:39:56.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-05-24 04:39:57.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2010-05-24 04:39:57.000 Unknown request type! Default to capabilities. ---------------------- 2010-05-24 04:39:57.000 Destination hostname could not be determined ---------------------- 2010-05-24 04:39:57.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2010-05-24 04:39:57.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-05-24 04:39:57.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-05-24 04:39:57.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2010-05-24 04:39:57.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-05-24 04:39:57.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-05-24 04:39:57.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2010-05-24 13:37:04.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2010-05-24 11:37:04.000 Logging started. ---------------------- 2010-05-24 11:37:04.000 BioCASe protocol used. ---------------------- 2010-05-24 11:37:04.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2010-05-24 11:37:04.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2010-05-24 11:37:04.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-05-24 11:37:04.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2010-05-24 11:37:04.000 Unknown request type! Default to capabilities. ---------------------- 2010-05-24 11:37:04.000 Destination hostname could not be determined ---------------------- 2010-05-24 11:37:04.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2010-05-24 11:37:04.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-05-24 11:37:04.000 Pickled file is of latest revision. ---------------------- 2010-05-24 11:37:04.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2010-05-24 11:37:04.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2010-05-24 11:37:04.000 Reset CMF convenience cache data hash. ---------------------- 2010-05-24 11:37:04.000 Loading CMF from the source XML file. ---------------------- 2010-05-24 11:37:04.000 CMF Version 2.1 detected. ---------------------- 2010-05-24 11:37:04.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2010-05-24 11:37:04.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2010-05-24 11:37:04.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-05-24 11:37:04.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-05-24 11:37:04.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-05-28 01:37:09.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-05-28 00:57:58.77 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-05-27 23:37:09.000 Logging started. ---------------------- 2010-05-27 23:37:09.000 BioCASe protocol used. ---------------------- 2010-05-27 23:37:09.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-05-27 23:37:09.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-05-27 23:37:09.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-05-27 23:37:09.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-05-27 23:37:09.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-05-28 00:57:58.77\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-05-28 00:57:58.77\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-05-28 00:57:58.77\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-05-27 23:37:09.000 Found online debuglevel setting: 1 ---------------------- 2010-05-27 23:37:09.000 Setting debuglevel from 0 to 1 ---------------------- 2010-05-27 23:37:09.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-05-27 23:37:09.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-05-27 23:37:09.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-05-27 23:37:09.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-05-27 23:37:09.000 Pickled file is of latest revision. ---------------------- 2010-05-27 23:37:09.000 Original filter string parsed:
0.1 2010-05-28 00:57:58.77 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-05-27 23:37:09.000 Filter created: None ---------------------- 2010-05-27 23:37:09.000 Compressed filter used: None ---------------------- 2010-05-27 23:37:09.000 Counting total matched records with filter=None ---------------------- 2010-05-27 23:37:09.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-05-27 23:37:09.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2010-05-28 10:23:18.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2010-05-28 08:23:18.000 Logging started. ---------------------- 2010-05-28 08:23:18.000 BioCASe protocol used. ---------------------- 2010-05-28 08:23:18.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2010-05-28 08:23:18.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2010-05-28 08:23:18.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-05-28 08:23:18.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2010-05-28 08:23:18.000 Unknown request type! Default to capabilities. ---------------------- 2010-05-28 08:23:18.000 Destination hostname could not be determined ---------------------- 2010-05-28 08:23:18.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2010-05-28 08:23:18.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-05-28 08:23:18.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-05-28 08:23:18.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2010-05-28 08:23:18.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-05-28 08:23:18.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-05-28 08:23:18.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2010-05-28 14:23:14.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2010-05-28 12:23:14.000 Logging started. ---------------------- 2010-05-28 12:23:14.000 BioCASe protocol used. ---------------------- 2010-05-28 12:23:14.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2010-05-28 12:23:14.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2010-05-28 12:23:14.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-05-28 12:23:14.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2010-05-28 12:23:14.000 Unknown request type! Default to capabilities. ---------------------- 2010-05-28 12:23:14.000 Destination hostname could not be determined ---------------------- 2010-05-28 12:23:14.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2010-05-28 12:23:14.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-05-28 12:23:15.000 Pickled file is of latest revision. ---------------------- 2010-05-28 12:23:15.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2010-05-28 12:23:15.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2010-05-28 12:23:15.000 Reset CMF convenience cache data hash. ---------------------- 2010-05-28 12:23:15.000 Loading CMF from the source XML file. ---------------------- 2010-05-28 12:23:15.000 CMF Version 2.1 detected. ---------------------- 2010-05-28 12:23:15.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2010-05-28 12:23:15.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2010-05-28 12:23:15.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-05-28 12:23:15.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-05-28 12:23:15.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-05-28 18:23:11.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2010-05-28 16:23:11.000 Logging started. ---------------------- 2010-05-28 16:23:11.000 BioCASe protocol used. ---------------------- 2010-05-28 16:23:11.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-05-28 16:23:11.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-05-28 16:23:11.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-05-28 16:23:11.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2010-05-28 16:23:11.000 Unknown request type! Default to capabilities. ---------------------- 2010-05-28 16:23:11.000 Destination hostname could not be determined ---------------------- 2010-05-28 16:23:11.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2010-05-28 16:23:11.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2010-05-28 16:23:11.000 Reset CMF convenience cache data hash. ---------------------- 2010-05-28 16:23:11.000 Loading CMF from the source XML file. ---------------------- 2010-05-28 16:23:11.000 CMF Version 2.1 detected. ---------------------- 2010-05-28 16:23:11.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2010-05-28 16:23:11.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2010-05-28 16:23:11.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-05-28 16:23:11.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-05-28 16:23:11.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-05-28 16:23:11.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-05-28 16:23:11.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-05-28 16:23:11.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-05-29 00:08:08.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-05-29 00:08:07.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString iGDjOKofGnfDbwT liiiingop@gmail7.com nYncKOzJsHwDBPqxU pelengator7 USA 974219 khmWy3 liiiingop@gmail7.com liiiingop@gmail7.com pelengator7
### ERROR LOG The Logging Results: ---------------------- 2010-05-28 22:08:08.000 Logging started. ---------------------- 2010-05-28 22:08:08.000 BioCASe protocol used. ---------------------- 2010-05-28 22:08:08.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-05-28 22:08:08.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-05-28 22:08:08.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-05-28 22:08:08.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-05-28 22:08:08.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-05-29 00:08:07.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n iGDjOKofGnfDbwT\n liiiingop@gmail7.com\n nYncKOzJsHwDBPqxU\n pelengator7\n USA\n 974219\n khmWy3\n liiiingop@gmail7.com\n liiiingop@gmail7.com\n pelengator7\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-05-29 00:08:07.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n iGDjOKofGnfDbwT\n liiiingop@gmail7.com\n nYncKOzJsHwDBPqxU\n pelengator7\n USA\n 974219\n khmWy3\n liiiingop@gmail7.com\n liiiingop@gmail7.com\n pelengator7\n\n\n\n \n
'} ---------------------- 2010-05-28 22:08:08.000 Found online debuglevel setting: 1 ---------------------- 2010-05-28 22:08:08.000 Setting debuglevel from 0 to 1 ---------------------- 2010-05-28 22:08:08.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-05-28 22:08:08.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-05-28 22:08:08.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-05-28 22:08:08.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-05-28 22:08:09.000 Pickled file is of latest revision. ---------------------- 2010-05-28 22:08:09.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-05-28 22:08:09.000 Original filter string parsed:
2.4.2 2010-05-29 00:08:07.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString iGDjOKofGnfDbwT liiiingop@gmail7.com nYncKOzJsHwDBPqxU pelengator7 USA 974219 khmWy3 liiiingop@gmail7.com liiiingop@gmail7.com pelengator7
---------------------- 2010-05-28 22:08:09.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE iGDjOKofGnfDbwT ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = liiiingop@gmail7.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE nYncKOzJsHwDBPqxU ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE pelengator7 ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 974219 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE khmWy3 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = liiiingop@gmail7.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = liiiingop@gmail7.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE pelengator7 )) ---------------------- 2010-05-28 22:08:09.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE iGDjOKofGnfDbwT ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = liiiingop@gmail7.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE nYncKOzJsHwDBPqxU ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE pelengator7 ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 974219 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE khmWy3 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = liiiingop@gmail7.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = liiiingop@gmail7.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE pelengator7 )) ---------------------- 2010-05-28 22:08:09.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE iGDjOKofGnfDbwT ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = liiiingop@gmail7.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE nYncKOzJsHwDBPqxU ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE pelengator7 ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 974219 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE khmWy3 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = liiiingop@gmail7.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = liiiingop@gmail7.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE pelengator7 )) ---------------------- 2010-05-28 22:08:09.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE iGDjOKofGnfDbwT ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = liiiingop@gmail7.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE nYncKOzJsHwDBPqxU ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE pelengator7 ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 974219 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE khmWy3 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = liiiingop@gmail7.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = liiiingop@gmail7.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE pelengator7 )) ---------------------- 2010-05-28 22:08:09.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-05-28 22:08:09.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'iGDjOKofGnfDbwT' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'liiiingop@gmail7.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'nYncKOzJsHwDBPqxU' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'pelengator7' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '974219' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'khmWy3' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'liiiingop@gmail7.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'liiiingop@gmail7.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'pelengator7' ))' ---------------------- 2010-05-28 22:08:09.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "liiiingop@gmail7.com" ---------------------- 2010-05-28 22:08:09.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-06-01 08:17:16.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2010-06-01 06:17:16.000 Logging started. ---------------------- 2010-06-01 06:17:16.000 BioCASe protocol used. ---------------------- 2010-06-01 06:17:16.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-06-01 06:17:16.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-06-01 06:17:16.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-06-01 06:17:16.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2010-06-01 06:17:16.000 Unknown request type! Default to capabilities. ---------------------- 2010-06-01 06:17:16.000 Destination hostname could not be determined ---------------------- 2010-06-01 06:17:16.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2010-06-01 06:17:16.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2010-06-01 06:17:16.000 Reset CMF convenience cache data hash. ---------------------- 2010-06-01 06:17:16.000 Loading CMF from the source XML file. ---------------------- 2010-06-01 06:17:16.000 CMF Version 2.1 detected. ---------------------- 2010-06-01 06:17:16.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2010-06-01 06:17:16.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2010-06-01 06:17:16.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-06-01 06:17:16.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-06-01 06:17:16.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-06-01 06:17:16.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-06-01 06:17:16.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-06-01 06:17:16.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2010-06-01 11:15:14.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2010-06-01 09:15:14.000 Logging started. ---------------------- 2010-06-01 09:15:14.000 BioCASe protocol used. ---------------------- 2010-06-01 09:15:14.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2010-06-01 09:15:14.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2010-06-01 09:15:14.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-06-01 09:15:14.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2010-06-01 09:15:14.000 Unknown request type! Default to capabilities. ---------------------- 2010-06-01 09:15:14.000 Destination hostname could not be determined ---------------------- 2010-06-01 09:15:14.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2010-06-01 09:15:14.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-06-01 09:15:14.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-06-01 09:15:14.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2010-06-01 09:15:14.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-06-01 09:15:14.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-06-01 09:15:14.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2010-06-01 17:11:09.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2010-06-01 15:11:09.000 Logging started. ---------------------- 2010-06-01 15:11:09.000 BioCASe protocol used. ---------------------- 2010-06-01 15:11:09.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2010-06-01 15:11:09.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2010-06-01 15:11:09.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-06-01 15:11:09.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2010-06-01 15:11:09.000 Unknown request type! Default to capabilities. ---------------------- 2010-06-01 15:11:09.000 Destination hostname could not be determined ---------------------- 2010-06-01 15:11:09.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2010-06-01 15:11:09.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-06-01 15:11:09.000 Pickled file is of latest revision. ---------------------- 2010-06-01 15:11:09.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2010-06-01 15:11:09.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2010-06-01 15:11:09.000 Reset CMF convenience cache data hash. ---------------------- 2010-06-01 15:11:09.000 Loading CMF from the source XML file. ---------------------- 2010-06-01 15:11:09.000 CMF Version 2.1 detected. ---------------------- 2010-06-01 15:11:10.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2010-06-01 15:11:10.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2010-06-01 15:11:10.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-06-01 15:11:10.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-06-01 15:11:10.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-06-02 14:38:53.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-06-02 14:38:52.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString wUtxGyTYdFiegoSZz znakomstva@jpluu.com vAYPPmqkSwpIwtXBY sexznakomstva USA 1361 KafrnA znakomstva@jpluu.com znakomstva@jpluu.com sexznakomstva
### ERROR LOG The Logging Results: ---------------------- 2010-06-02 12:38:53.000 Logging started. ---------------------- 2010-06-02 12:38:53.000 BioCASe protocol used. ---------------------- 2010-06-02 12:38:53.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-06-02 12:38:53.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-06-02 12:38:53.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-06-02 12:38:53.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-06-02 12:38:53.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-06-02 14:38:52.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n wUtxGyTYdFiegoSZz\n znakomstva@jpluu.com\n vAYPPmqkSwpIwtXBY\n sexznakomstva\n USA\n 1361\n KafrnA\n znakomstva@jpluu.com\n znakomstva@jpluu.com\n sexznakomstva\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-06-02 14:38:52.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n wUtxGyTYdFiegoSZz\n znakomstva@jpluu.com\n vAYPPmqkSwpIwtXBY\n sexznakomstva\n USA\n 1361\n KafrnA\n znakomstva@jpluu.com\n znakomstva@jpluu.com\n sexznakomstva\n\n\n\n \n
'} ---------------------- 2010-06-02 12:38:53.000 Found online debuglevel setting: 1 ---------------------- 2010-06-02 12:38:53.000 Setting debuglevel from 0 to 1 ---------------------- 2010-06-02 12:38:53.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-06-02 12:38:53.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-06-02 12:38:53.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-06-02 12:38:53.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-06-02 12:38:54.000 Pickled file is of latest revision. ---------------------- 2010-06-02 12:38:54.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-06-02 12:38:54.000 Original filter string parsed:
2.4.2 2010-06-02 14:38:52.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString wUtxGyTYdFiegoSZz znakomstva@jpluu.com vAYPPmqkSwpIwtXBY sexznakomstva USA 1361 KafrnA znakomstva@jpluu.com znakomstva@jpluu.com sexznakomstva
---------------------- 2010-06-02 12:38:54.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE wUtxGyTYdFiegoSZz ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = znakomstva@jpluu.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE vAYPPmqkSwpIwtXBY ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE sexznakomstva ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 1361 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE KafrnA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = znakomstva@jpluu.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = znakomstva@jpluu.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE sexznakomstva )) ---------------------- 2010-06-02 12:38:54.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE wUtxGyTYdFiegoSZz ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = znakomstva@jpluu.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE vAYPPmqkSwpIwtXBY ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE sexznakomstva ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 1361 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE KafrnA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = znakomstva@jpluu.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = znakomstva@jpluu.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE sexznakomstva )) ---------------------- 2010-06-02 12:38:54.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE wUtxGyTYdFiegoSZz ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = znakomstva@jpluu.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE vAYPPmqkSwpIwtXBY ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE sexznakomstva ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 1361 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE KafrnA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = znakomstva@jpluu.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = znakomstva@jpluu.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE sexznakomstva )) ---------------------- 2010-06-02 12:38:54.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE wUtxGyTYdFiegoSZz ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = znakomstva@jpluu.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE vAYPPmqkSwpIwtXBY ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE sexznakomstva ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 1361 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE KafrnA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = znakomstva@jpluu.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = znakomstva@jpluu.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE sexznakomstva )) ---------------------- 2010-06-02 12:38:54.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-06-02 12:38:54.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'wUtxGyTYdFiegoSZz' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'znakomstva@jpluu.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'vAYPPmqkSwpIwtXBY' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'sexznakomstva' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '1361' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'KafrnA' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'znakomstva@jpluu.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'znakomstva@jpluu.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'sexznakomstva' ))' ---------------------- 2010-06-02 12:38:54.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "znakomstva@jpluu.com" ---------------------- 2010-06-02 12:38:54.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-06-03 04:19:59.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-06-03 04:19:58.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString ZDXcINgiFQZILTTIcnD sex-znakolk@koiplki.com KYZwVPQvYbztNglgRO sex-znakomstva USA 8136 v0HidL sex-znakolk@koiplki.com sex-znakolk@koiplki.com sex-znakomstva
### ERROR LOG The Logging Results: ---------------------- 2010-06-03 02:19:59.000 Logging started. ---------------------- 2010-06-03 02:19:59.000 BioCASe protocol used. ---------------------- 2010-06-03 02:19:59.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-06-03 02:19:59.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-06-03 02:19:59.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-06-03 02:19:59.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-06-03 02:19:59.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-06-03 04:19:58.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n ZDXcINgiFQZILTTIcnD\n sex-znakolk@koiplki.com\n KYZwVPQvYbztNglgRO\n sex-znakomstva\n USA\n 8136\n v0HidL\n sex-znakolk@koiplki.com\n sex-znakolk@koiplki.com\n sex-znakomstva\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-06-03 04:19:58.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n ZDXcINgiFQZILTTIcnD\n sex-znakolk@koiplki.com\n KYZwVPQvYbztNglgRO\n sex-znakomstva\n USA\n 8136\n v0HidL\n sex-znakolk@koiplki.com\n sex-znakolk@koiplki.com\n sex-znakomstva\n\n\n\n \n
'} ---------------------- 2010-06-03 02:19:59.000 Found online debuglevel setting: 1 ---------------------- 2010-06-03 02:19:59.000 Setting debuglevel from 0 to 1 ---------------------- 2010-06-03 02:19:59.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-06-03 02:19:59.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-06-03 02:19:59.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-06-03 02:19:59.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-06-03 02:19:59.000 Pickled file is of latest revision. ---------------------- 2010-06-03 02:19:59.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-06-03 02:19:59.000 Original filter string parsed:
2.4.2 2010-06-03 04:19:58.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString ZDXcINgiFQZILTTIcnD sex-znakolk@koiplki.com KYZwVPQvYbztNglgRO sex-znakomstva USA 8136 v0HidL sex-znakolk@koiplki.com sex-znakolk@koiplki.com sex-znakomstva
---------------------- 2010-06-03 02:19:59.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE ZDXcINgiFQZILTTIcnD ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = sex-znakolk@koiplki.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE KYZwVPQvYbztNglgRO ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE sex-znakomstva ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 8136 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE v0HidL ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = sex-znakolk@koiplki.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = sex-znakolk@koiplki.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE sex-znakomstva )) ---------------------- 2010-06-03 02:19:59.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE ZDXcINgiFQZILTTIcnD ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = sex-znakolk@koiplki.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE KYZwVPQvYbztNglgRO ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE sex-znakomstva ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 8136 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE v0HidL ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = sex-znakolk@koiplki.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = sex-znakolk@koiplki.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE sex-znakomstva )) ---------------------- 2010-06-03 02:19:59.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE ZDXcINgiFQZILTTIcnD ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = sex-znakolk@koiplki.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE KYZwVPQvYbztNglgRO ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE sex-znakomstva ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 8136 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE v0HidL ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = sex-znakolk@koiplki.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = sex-znakolk@koiplki.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE sex-znakomstva )) ---------------------- 2010-06-03 02:19:59.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE ZDXcINgiFQZILTTIcnD ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = sex-znakolk@koiplki.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE KYZwVPQvYbztNglgRO ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE sex-znakomstva ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 8136 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE v0HidL ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = sex-znakolk@koiplki.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = sex-znakolk@koiplki.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE sex-znakomstva )) ---------------------- 2010-06-03 02:19:59.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-06-03 02:19:59.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'ZDXcINgiFQZILTTIcnD' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'sex-znakolk@koiplki.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'KYZwVPQvYbztNglgRO' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'sex-znakomstva' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '8136' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'v0HidL' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'sex-znakolk@koiplki.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'sex-znakolk@koiplki.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'sex-znakomstva' ))' ---------------------- 2010-06-03 02:19:59.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "sex-znakolk@koiplki.com" ---------------------- 2010-06-03 02:19:59.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-06-03 04:20:01.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 <- to RMCA_Amphibians
2.4.2 2010-06-03 04:20:01.000 search
http://www.tdwg.org/schemas/abcd/2.06 http://www.tdwg.org/schemas/abcd/2.06 ZDXcINgiFQZILTTIcnD sex-znakolk@koiplki.com KYZwVPQvYbztNglgRO sex-znakomstva USA 8136 v0HidL sex-znakolk@koiplki.com sex-znakolk@koiplki.com sex-znakomstva None False
### ERROR LOG The Logging Results: ---------------------- 2010-06-03 02:20:01.000 Logging started. ---------------------- 2010-06-03 02:20:01.000 BioCASe protocol used. ---------------------- 2010-06-03 02:20:01.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-06-03 02:20:01.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-06-03 02:20:01.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-06-03 02:20:01.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-06-03 02:20:01.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 2.4.2\n 2010-06-03 04:20:01.000\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n http://www.tdwg.org/schemas/abcd/2.06\n \n \n\n \n \n \n \n \n \n \n \n ZDXcINgiFQZILTTIcnD\n sex-znakolk@koiplki.com\n \n KYZwVPQvYbztNglgRO\n \n sex-znakomstva\n \n USA\n \n 8136\n \n v0HidL\n \n sex-znakolk@koiplki.com\n \n sex-znakolk@koiplki.com\n \n sex-znakomstva\n None\n\n \n False\n \n
\n ', 'request_string': '\n \n \n
\n 2.4.2\n 2010-06-03 04:20:01.000\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n http://www.tdwg.org/schemas/abcd/2.06\n \n \n\n \n \n \n \n \n \n \n \n ZDXcINgiFQZILTTIcnD\n sex-znakolk@koiplki.com\n \n KYZwVPQvYbztNglgRO\n \n sex-znakomstva\n \n USA\n \n 8136\n \n v0HidL\n \n sex-znakolk@koiplki.com\n \n sex-znakolk@koiplki.com\n \n sex-znakomstva\n None\n\n \n False\n \n
\n '} ---------------------- 2010-06-03 02:20:01.000 Found online debuglevel setting: 1 ---------------------- 2010-06-03 02:20:01.000 Setting debuglevel from 0 to 1 ---------------------- 2010-06-03 02:20:01.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-06-03 02:20:02.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-06-03 02:20:02.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-06-03 02:20:02.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-06-03 02:20:02.000 Pickled file is of latest revision. ---------------------- 2010-06-03 02:20:02.000 Original filter string parsed:
2.4.2 2010-06-03 04:20:01.000 search
http://www.tdwg.org/schemas/abcd/2.06 http://www.tdwg.org/schemas/abcd/2.06 ZDXcINgiFQZILTTIcnD sex-znakolk@koiplki.com KYZwVPQvYbztNglgRO sex-znakomstva USA 8136 v0HidL sex-znakolk@koiplki.com sex-znakolk@koiplki.com sex-znakomstva None False
---------------------- 2010-06-03 02:20:02.000 Filter created: (((((((((("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE ZDXcINgiFQZILTTIcnD ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = sex-znakolk@koiplki.com )) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE KYZwVPQvYbztNglgRO )) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE sex-znakomstva )) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA )) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 8136 )) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE v0HidL )) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = sex-znakolk@koiplki.com )) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = sex-znakolk@koiplki.com )) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE sex-znakomstva ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" = None )) ---------------------- 2010-06-03 02:20:02.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE ZDXcINgiFQZILTTIcnD ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = sex-znakolk@koiplki.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE KYZwVPQvYbztNglgRO ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE sex-znakomstva ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 8136 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE v0HidL ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = sex-znakolk@koiplki.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = sex-znakolk@koiplki.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE sex-znakomstva ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" = None )) ---------------------- 2010-06-03 02:20:02.000 Record Identifier used: v_abcd2v06herpnet_trigger.pk(text) ---------------------- 2010-06-03 02:20:02.000 Use SQL LIMIT to limit the first result set of IDs only to the maximum of 1000 records. ---------------------- 2010-06-03 02:20:02.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06herpnet_trigger"."pk" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'ZDXcINgiFQZILTTIcnD' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'sex-znakolk@koiplki.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'KYZwVPQvYbztNglgRO' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'sex-znakomstva' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '8136' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'v0HidL' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'sex-znakolk@koiplki.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'sex-znakolk@koiplki.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'sex-znakomstva' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" = 'None' )) ORDER BY "v_abcd2v06herpnet_trigger"."pk" LIMIT 1001' ---------------------- 2010-06-03 02:20:02.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 110, in doRequest (self.resultDOM, self.resultStatus) = operationObj.search(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 205, in search (recordset, recStatus) = self._getSearchResultList() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 324, in _getSearchResultList AllIDs = [ item[0] for item in self.execSelect([recID], self.requestObj.filter, orderByList=[recID], limit=start+limit)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 73, in execSelect return self.execSQL(sql, paras) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "sex-znakolk@koiplki.com" ---------------------- 2010-06-03 02:20:02.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-06-03 18:24:15.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-06-03 18:24:14.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString TPNxQHnf vin@mailgfrgr.com MmVqNCsXzdvuxYhw vin code USA 147582 KlHJw vin@mailgfrgr.com vin@mailgfrgr.com vin code
### ERROR LOG The Logging Results: ---------------------- 2010-06-03 16:24:15.000 Logging started. ---------------------- 2010-06-03 16:24:15.000 BioCASe protocol used. ---------------------- 2010-06-03 16:24:15.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-06-03 16:24:15.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-06-03 16:24:15.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-06-03 16:24:15.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-06-03 16:24:15.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-06-03 18:24:14.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n TPNxQHnf\n vin@mailgfrgr.com\n MmVqNCsXzdvuxYhw\n vin code\n USA\n 147582\n KlHJw\n vin@mailgfrgr.com\n vin@mailgfrgr.com\n vin code\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-06-03 18:24:14.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n TPNxQHnf\n vin@mailgfrgr.com\n MmVqNCsXzdvuxYhw\n vin code\n USA\n 147582\n KlHJw\n vin@mailgfrgr.com\n vin@mailgfrgr.com\n vin code\n\n\n\n \n
'} ---------------------- 2010-06-03 16:24:15.000 Found online debuglevel setting: 1 ---------------------- 2010-06-03 16:24:15.000 Setting debuglevel from 0 to 1 ---------------------- 2010-06-03 16:24:15.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-06-03 16:24:15.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-06-03 16:24:15.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-06-03 16:24:15.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-06-03 16:24:15.000 Pickled file is of latest revision. ---------------------- 2010-06-03 16:24:15.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-06-03 16:24:15.000 Original filter string parsed:
2.4.2 2010-06-03 18:24:14.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString TPNxQHnf vin@mailgfrgr.com MmVqNCsXzdvuxYhw vin code USA 147582 KlHJw vin@mailgfrgr.com vin@mailgfrgr.com vin code
---------------------- 2010-06-03 16:24:15.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE TPNxQHnf ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = vin@mailgfrgr.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE MmVqNCsXzdvuxYhw ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE vin code ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 147582 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE KlHJw ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = vin@mailgfrgr.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = vin@mailgfrgr.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE vin code )) ---------------------- 2010-06-03 16:24:15.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE TPNxQHnf ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = vin@mailgfrgr.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE MmVqNCsXzdvuxYhw ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE vin code ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 147582 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE KlHJw ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = vin@mailgfrgr.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = vin@mailgfrgr.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE vin code )) ---------------------- 2010-06-03 16:24:15.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE TPNxQHnf ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = vin@mailgfrgr.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE MmVqNCsXzdvuxYhw ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE vin code ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 147582 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE KlHJw ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = vin@mailgfrgr.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = vin@mailgfrgr.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE vin code )) ---------------------- 2010-06-03 16:24:15.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE TPNxQHnf ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = vin@mailgfrgr.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE MmVqNCsXzdvuxYhw ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE vin code ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 147582 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE KlHJw ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = vin@mailgfrgr.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = vin@mailgfrgr.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE vin code )) ---------------------- 2010-06-03 16:24:15.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-06-03 16:24:15.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'TPNxQHnf' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'vin@mailgfrgr.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'MmVqNCsXzdvuxYhw' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'vin code' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '147582' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'KlHJw' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'vin@mailgfrgr.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'vin@mailgfrgr.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'vin code' ))' ---------------------- 2010-06-03 16:24:15.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "vin@mailgfrgr.com" ---------------------- 2010-06-03 16:24:15.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-06-04 01:37:44.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-06-04 00:58:55.47 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-06-03 23:37:44.000 Logging started. ---------------------- 2010-06-03 23:37:44.000 BioCASe protocol used. ---------------------- 2010-06-03 23:37:44.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-06-03 23:37:44.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-06-03 23:37:44.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-06-03 23:37:44.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-06-03 23:37:44.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-06-04 00:58:55.47\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-06-04 00:58:55.47\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-06-04 00:58:55.47\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-06-03 23:37:44.000 Found online debuglevel setting: 1 ---------------------- 2010-06-03 23:37:44.000 Setting debuglevel from 0 to 1 ---------------------- 2010-06-03 23:37:44.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-06-03 23:37:44.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-06-03 23:37:44.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-06-03 23:37:44.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-06-03 23:37:44.000 Pickled file is of latest revision. ---------------------- 2010-06-03 23:37:44.000 Original filter string parsed:
0.1 2010-06-04 00:58:55.47 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-06-03 23:37:44.000 Filter created: None ---------------------- 2010-06-03 23:37:44.000 Compressed filter used: None ---------------------- 2010-06-03 23:37:44.000 Counting total matched records with filter=None ---------------------- 2010-06-03 23:37:44.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-06-03 23:37:44.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2010-06-04 06:55:38.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2010-06-04 04:55:38.000 Logging started. ---------------------- 2010-06-04 04:55:38.000 BioCASe protocol used. ---------------------- 2010-06-04 04:55:38.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2010-06-04 04:55:38.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2010-06-04 04:55:38.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-06-04 04:55:39.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2010-06-04 04:55:39.000 Unknown request type! Default to capabilities. ---------------------- 2010-06-04 04:55:39.000 Destination hostname could not be determined ---------------------- 2010-06-04 04:55:39.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2010-06-04 04:55:39.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-06-04 04:55:39.000 Pickled file is of latest revision. ---------------------- 2010-06-04 04:55:39.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2010-06-04 04:55:39.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2010-06-04 04:55:39.000 Reset CMF convenience cache data hash. ---------------------- 2010-06-04 04:55:39.000 Loading CMF from the source XML file. ---------------------- 2010-06-04 04:55:39.000 CMF Version 2.1 detected. ---------------------- 2010-06-04 04:55:39.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2010-06-04 04:55:39.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2010-06-04 04:55:39.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-06-04 04:55:39.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-06-04 04:55:39.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-06-04 13:55:07.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2010-06-04 11:55:07.000 Logging started. ---------------------- 2010-06-04 11:55:07.000 BioCASe protocol used. ---------------------- 2010-06-04 11:55:07.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-06-04 11:55:07.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-06-04 11:55:07.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-06-04 11:55:07.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2010-06-04 11:55:07.000 Unknown request type! Default to capabilities. ---------------------- 2010-06-04 11:55:07.000 Destination hostname could not be determined ---------------------- 2010-06-04 11:55:07.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2010-06-04 11:55:08.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2010-06-04 11:55:08.000 Reset CMF convenience cache data hash. ---------------------- 2010-06-04 11:55:08.000 Loading CMF from the source XML file. ---------------------- 2010-06-04 11:55:08.000 CMF Version 2.1 detected. ---------------------- 2010-06-04 11:55:08.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2010-06-04 11:55:08.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2010-06-04 11:55:08.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-06-04 11:55:08.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-06-04 11:55:08.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-06-04 11:55:08.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-06-04 11:55:08.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-06-04 11:55:08.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2010-06-04 14:37:03.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2010-06-04 12:37:03.000 Logging started. ---------------------- 2010-06-04 12:37:03.000 BioCASe protocol used. ---------------------- 2010-06-04 12:37:03.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2010-06-04 12:37:03.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2010-06-04 12:37:03.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-06-04 12:37:03.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2010-06-04 12:37:03.000 Unknown request type! Default to capabilities. ---------------------- 2010-06-04 12:37:03.000 Destination hostname could not be determined ---------------------- 2010-06-04 12:37:03.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2010-06-04 12:37:03.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-06-04 12:37:03.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-06-04 12:37:03.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2010-06-04 12:37:03.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-06-04 12:37:03.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-06-04 12:37:03.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-06-04 22:50:51.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-06-04 22:50:50.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString weBRXVtAluT viacom@cialikfioes.com BISARfJZOGxBjnaLP cialis c5 USA 55537 GYxfw viacom@cialikfioes.com viacom@cialikfioes.com cialis c5
### ERROR LOG The Logging Results: ---------------------- 2010-06-04 20:50:51.000 Logging started. ---------------------- 2010-06-04 20:50:51.000 BioCASe protocol used. ---------------------- 2010-06-04 20:50:51.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-06-04 20:50:51.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-06-04 20:50:51.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-06-04 20:50:51.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-06-04 20:50:51.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-06-04 22:50:50.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n weBRXVtAluT\n viacom@cialikfioes.com\n BISARfJZOGxBjnaLP\n cialis c5\n USA\n 55537\n GYxfw\n viacom@cialikfioes.com\n viacom@cialikfioes.com\n cialis c5\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-06-04 22:50:50.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n weBRXVtAluT\n viacom@cialikfioes.com\n BISARfJZOGxBjnaLP\n cialis c5\n USA\n 55537\n GYxfw\n viacom@cialikfioes.com\n viacom@cialikfioes.com\n cialis c5\n\n\n\n \n
'} ---------------------- 2010-06-04 20:50:51.000 Found online debuglevel setting: 1 ---------------------- 2010-06-04 20:50:51.000 Setting debuglevel from 0 to 1 ---------------------- 2010-06-04 20:50:51.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-06-04 20:50:51.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-06-04 20:50:51.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-06-04 20:50:51.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-06-04 20:50:52.000 Pickled file is of latest revision. ---------------------- 2010-06-04 20:50:52.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-06-04 20:50:52.000 Original filter string parsed:
2.4.2 2010-06-04 22:50:50.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString weBRXVtAluT viacom@cialikfioes.com BISARfJZOGxBjnaLP cialis c5 USA 55537 GYxfw viacom@cialikfioes.com viacom@cialikfioes.com cialis c5
---------------------- 2010-06-04 20:50:52.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE weBRXVtAluT ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = viacom@cialikfioes.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE BISARfJZOGxBjnaLP ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE cialis c5 ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 55537 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE GYxfw ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = viacom@cialikfioes.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = viacom@cialikfioes.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE cialis c5 )) ---------------------- 2010-06-04 20:50:52.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE weBRXVtAluT ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = viacom@cialikfioes.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE BISARfJZOGxBjnaLP ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE cialis c5 ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 55537 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE GYxfw ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = viacom@cialikfioes.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = viacom@cialikfioes.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE cialis c5 )) ---------------------- 2010-06-04 20:50:52.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE weBRXVtAluT ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = viacom@cialikfioes.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE BISARfJZOGxBjnaLP ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE cialis c5 ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 55537 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE GYxfw ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = viacom@cialikfioes.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = viacom@cialikfioes.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE cialis c5 )) ---------------------- 2010-06-04 20:50:52.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE weBRXVtAluT ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = viacom@cialikfioes.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE BISARfJZOGxBjnaLP ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE cialis c5 ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 55537 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE GYxfw ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = viacom@cialikfioes.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = viacom@cialikfioes.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE cialis c5 )) ---------------------- 2010-06-04 20:50:52.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-06-04 20:50:52.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'weBRXVtAluT' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'viacom@cialikfioes.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'BISARfJZOGxBjnaLP' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'cialis c5' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '55537' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'GYxfw' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'viacom@cialikfioes.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'viacom@cialikfioes.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'cialis c5' ))' ---------------------- 2010-06-04 20:50:52.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "viacom@cialikfioes.com" ---------------------- 2010-06-04 20:50:52.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-06-05 12:28:54.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-06-05 12:28:54.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString VIpKvXIGd lostinparadise@viagrasdomentos.com xQvmazFYz viagraboy USA 7798 zwEX9p lostinparadise@viagrasdomentos.com lostinparadise@viagrasdomentos.com viagraboy
### ERROR LOG The Logging Results: ---------------------- 2010-06-05 10:28:54.000 Logging started. ---------------------- 2010-06-05 10:28:54.000 BioCASe protocol used. ---------------------- 2010-06-05 10:28:54.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-06-05 10:28:54.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-06-05 10:28:54.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-06-05 10:28:54.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-06-05 10:28:54.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-06-05 12:28:54.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n VIpKvXIGd\n lostinparadise@viagrasdomentos.com\n xQvmazFYz\n viagraboy\n USA\n 7798\n zwEX9p\n lostinparadise@viagrasdomentos.com\n lostinparadise@viagrasdomentos.com\n viagraboy\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-06-05 12:28:54.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n VIpKvXIGd\n lostinparadise@viagrasdomentos.com\n xQvmazFYz\n viagraboy\n USA\n 7798\n zwEX9p\n lostinparadise@viagrasdomentos.com\n lostinparadise@viagrasdomentos.com\n viagraboy\n\n\n\n \n
'} ---------------------- 2010-06-05 10:28:54.000 Found online debuglevel setting: 1 ---------------------- 2010-06-05 10:28:54.000 Setting debuglevel from 0 to 1 ---------------------- 2010-06-05 10:28:54.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-06-05 10:28:54.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-06-05 10:28:54.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-06-05 10:28:54.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-06-05 10:28:55.000 Pickled file is of latest revision. ---------------------- 2010-06-05 10:28:55.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-06-05 10:28:55.000 Original filter string parsed:
2.4.2 2010-06-05 12:28:54.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString VIpKvXIGd lostinparadise@viagrasdomentos.com xQvmazFYz viagraboy USA 7798 zwEX9p lostinparadise@viagrasdomentos.com lostinparadise@viagrasdomentos.com viagraboy
---------------------- 2010-06-05 10:28:55.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE VIpKvXIGd ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = lostinparadise@viagrasdomentos.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE xQvmazFYz ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE viagraboy ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 7798 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE zwEX9p ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = lostinparadise@viagrasdomentos.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = lostinparadise@viagrasdomentos.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE viagraboy )) ---------------------- 2010-06-05 10:28:55.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE VIpKvXIGd ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = lostinparadise@viagrasdomentos.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE xQvmazFYz ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE viagraboy ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 7798 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE zwEX9p ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = lostinparadise@viagrasdomentos.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = lostinparadise@viagrasdomentos.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE viagraboy )) ---------------------- 2010-06-05 10:28:55.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE VIpKvXIGd ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = lostinparadise@viagrasdomentos.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE xQvmazFYz ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE viagraboy ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 7798 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE zwEX9p ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = lostinparadise@viagrasdomentos.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = lostinparadise@viagrasdomentos.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE viagraboy )) ---------------------- 2010-06-05 10:28:55.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE VIpKvXIGd ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = lostinparadise@viagrasdomentos.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE xQvmazFYz ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE viagraboy ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 7798 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE zwEX9p ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = lostinparadise@viagrasdomentos.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = lostinparadise@viagrasdomentos.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE viagraboy )) ---------------------- 2010-06-05 10:28:55.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-06-05 10:28:55.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'VIpKvXIGd' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'lostinparadise@viagrasdomentos.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'xQvmazFYz' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'viagraboy' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '7798' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'zwEX9p' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'lostinparadise@viagrasdomentos.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'lostinparadise@viagrasdomentos.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'viagraboy' ))' ---------------------- 2010-06-05 10:28:55.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "lostinparadise@viagrasdomentos.com" ---------------------- 2010-06-05 10:28:55.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2010-06-06 10:34:48.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2010-06-06 08:34:48.000 Logging started. ---------------------- 2010-06-06 08:34:48.000 BioCASe protocol used. ---------------------- 2010-06-06 08:34:48.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2010-06-06 08:34:48.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2010-06-06 08:34:48.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-06-06 08:34:48.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2010-06-06 08:34:48.000 Unknown request type! Default to capabilities. ---------------------- 2010-06-06 08:34:48.000 Destination hostname could not be determined ---------------------- 2010-06-06 08:34:48.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2010-06-06 08:34:48.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-06-06 08:34:48.000 Pickled file is of latest revision. ---------------------- 2010-06-06 08:34:48.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2010-06-06 08:34:48.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2010-06-06 08:34:48.000 Reset CMF convenience cache data hash. ---------------------- 2010-06-06 08:34:48.000 Loading CMF from the source XML file. ---------------------- 2010-06-06 08:34:48.000 CMF Version 2.1 detected. ---------------------- 2010-06-06 08:34:48.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2010-06-06 08:34:48.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2010-06-06 08:34:48.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-06-06 08:34:48.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-06-06 08:34:48.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2010-06-09 02:38:10.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2010-06-09 00:38:10.000 Logging started. ---------------------- 2010-06-09 00:38:10.000 BioCASe protocol used. ---------------------- 2010-06-09 00:38:10.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2010-06-09 00:38:11.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2010-06-09 00:38:11.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-06-09 00:38:11.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2010-06-09 00:38:11.000 Unknown request type! Default to capabilities. ---------------------- 2010-06-09 00:38:11.000 Destination hostname could not be determined ---------------------- 2010-06-09 00:38:11.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2010-06-09 00:38:11.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-06-09 00:38:11.000 Pickled file is of latest revision. ---------------------- 2010-06-09 00:38:11.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2010-06-09 00:38:11.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2010-06-09 00:38:11.000 Reset CMF convenience cache data hash. ---------------------- 2010-06-09 00:38:11.000 Loading CMF from the source XML file. ---------------------- 2010-06-09 00:38:11.000 CMF Version 2.1 detected. ---------------------- 2010-06-09 00:38:11.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2010-06-09 00:38:11.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2010-06-09 00:38:11.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-06-09 00:38:11.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-06-09 00:38:11.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-06-11 01:36:18.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-06-11 00:57:50.97 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-06-10 23:36:18.000 Logging started. ---------------------- 2010-06-10 23:36:18.000 BioCASe protocol used. ---------------------- 2010-06-10 23:36:18.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-06-10 23:36:18.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-06-10 23:36:18.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-06-10 23:36:18.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-06-10 23:36:18.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-06-11 00:57:50.97\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-06-11 00:57:50.97\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-06-11 00:57:50.97\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-06-10 23:36:18.000 Found online debuglevel setting: 1 ---------------------- 2010-06-10 23:36:18.000 Setting debuglevel from 0 to 1 ---------------------- 2010-06-10 23:36:18.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-06-10 23:36:18.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-06-10 23:36:18.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-06-10 23:36:18.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-06-10 23:36:18.000 Pickled file is of latest revision. ---------------------- 2010-06-10 23:36:18.000 Original filter string parsed:
0.1 2010-06-11 00:57:50.97 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-06-10 23:36:18.000 Filter created: None ---------------------- 2010-06-10 23:36:18.000 Compressed filter used: None ---------------------- 2010-06-10 23:36:18.000 Counting total matched records with filter=None ---------------------- 2010-06-10 23:36:18.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-06-10 23:36:18.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-06-11 01:44:43.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-06-11 01:44:43.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString ZfkdJDTHwTrqEeFE gijuroe585rt@fkjhiroerigjd5346.co.uk ZLLhUIxLEmpvV viagra cheap USA 618003 23vJO gijuroe585rt@fkjhiroerigjd5346.co.uk gijuroe585rt@fkjhiroerigjd5346.co.uk viagra cheap
### ERROR LOG The Logging Results: ---------------------- 2010-06-10 23:44:43.000 Logging started. ---------------------- 2010-06-10 23:44:43.000 BioCASe protocol used. ---------------------- 2010-06-10 23:44:43.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-06-10 23:44:43.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-06-10 23:44:43.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-06-10 23:44:44.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-06-10 23:44:44.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-06-11 01:44:43.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n ZfkdJDTHwTrqEeFE\n gijuroe585rt@fkjhiroerigjd5346.co.uk\n ZLLhUIxLEmpvV\n viagra cheap\n USA\n 618003\n 23vJO\n gijuroe585rt@fkjhiroerigjd5346.co.uk\n gijuroe585rt@fkjhiroerigjd5346.co.uk\n viagra cheap\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-06-11 01:44:43.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n ZfkdJDTHwTrqEeFE\n gijuroe585rt@fkjhiroerigjd5346.co.uk\n ZLLhUIxLEmpvV\n viagra cheap\n USA\n 618003\n 23vJO\n gijuroe585rt@fkjhiroerigjd5346.co.uk\n gijuroe585rt@fkjhiroerigjd5346.co.uk\n viagra cheap\n\n\n\n \n
'} ---------------------- 2010-06-10 23:44:44.000 Found online debuglevel setting: 1 ---------------------- 2010-06-10 23:44:44.000 Setting debuglevel from 0 to 1 ---------------------- 2010-06-10 23:44:44.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-06-10 23:44:44.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-06-10 23:44:44.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-06-10 23:44:44.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-06-10 23:44:44.000 Pickled file is of latest revision. ---------------------- 2010-06-10 23:44:44.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-06-10 23:44:44.000 Original filter string parsed:
2.4.2 2010-06-11 01:44:43.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString ZfkdJDTHwTrqEeFE gijuroe585rt@fkjhiroerigjd5346.co.uk ZLLhUIxLEmpvV viagra cheap USA 618003 23vJO gijuroe585rt@fkjhiroerigjd5346.co.uk gijuroe585rt@fkjhiroerigjd5346.co.uk viagra cheap
---------------------- 2010-06-10 23:44:44.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE ZfkdJDTHwTrqEeFE ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = gijuroe585rt@fkjhiroerigjd5346.co.uk ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE ZLLhUIxLEmpvV ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE viagra cheap ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 618003 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 23vJO ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = gijuroe585rt@fkjhiroerigjd5346.co.uk ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = gijuroe585rt@fkjhiroerigjd5346.co.uk ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE viagra cheap )) ---------------------- 2010-06-10 23:44:44.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE ZfkdJDTHwTrqEeFE ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = gijuroe585rt@fkjhiroerigjd5346.co.uk ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE ZLLhUIxLEmpvV ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE viagra cheap ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 618003 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 23vJO ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = gijuroe585rt@fkjhiroerigjd5346.co.uk ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = gijuroe585rt@fkjhiroerigjd5346.co.uk ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE viagra cheap )) ---------------------- 2010-06-10 23:44:44.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE ZfkdJDTHwTrqEeFE ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = gijuroe585rt@fkjhiroerigjd5346.co.uk ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE ZLLhUIxLEmpvV ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE viagra cheap ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 618003 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 23vJO ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = gijuroe585rt@fkjhiroerigjd5346.co.uk ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = gijuroe585rt@fkjhiroerigjd5346.co.uk ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE viagra cheap )) ---------------------- 2010-06-10 23:44:44.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE ZfkdJDTHwTrqEeFE ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = gijuroe585rt@fkjhiroerigjd5346.co.uk ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE ZLLhUIxLEmpvV ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE viagra cheap ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 618003 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 23vJO ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = gijuroe585rt@fkjhiroerigjd5346.co.uk ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = gijuroe585rt@fkjhiroerigjd5346.co.uk ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE viagra cheap )) ---------------------- 2010-06-10 23:44:44.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-06-10 23:44:44.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'ZfkdJDTHwTrqEeFE' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'gijuroe585rt@fkjhiroerigjd5346.co.uk' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'ZLLhUIxLEmpvV' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'viagra cheap' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '618003' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE '23vJO' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'gijuroe585rt@fkjhiroerigjd5346.co.uk' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'gijuroe585rt@fkjhiroerigjd5346.co.uk' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'viagra cheap' ))' ---------------------- 2010-06-10 23:44:44.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "gijuroe585rt@fkjhiroerigjd5346.co.uk" ---------------------- 2010-06-10 23:44:44.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2010-06-11 16:03:20.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2010-06-11 14:03:20.000 Logging started. ---------------------- 2010-06-11 14:03:20.000 BioCASe protocol used. ---------------------- 2010-06-11 14:03:20.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2010-06-11 14:03:20.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2010-06-11 14:03:20.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-06-11 14:03:20.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2010-06-11 14:03:20.000 Unknown request type! Default to capabilities. ---------------------- 2010-06-11 14:03:20.000 Destination hostname could not be determined ---------------------- 2010-06-11 14:03:20.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2010-06-11 14:03:20.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-06-11 14:03:20.000 Pickled file is of latest revision. ---------------------- 2010-06-11 14:03:20.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2010-06-11 14:03:20.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2010-06-11 14:03:20.000 Reset CMF convenience cache data hash. ---------------------- 2010-06-11 14:03:20.000 Loading CMF from the source XML file. ---------------------- 2010-06-11 14:03:20.000 CMF Version 2.1 detected. ---------------------- 2010-06-11 14:03:20.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2010-06-11 14:03:20.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2010-06-11 14:03:20.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-06-11 14:03:20.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-06-11 14:03:20.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2010-06-12 00:18:00.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2010-06-11 22:18:00.000 Logging started. ---------------------- 2010-06-11 22:18:00.000 BioCASe protocol used. ---------------------- 2010-06-11 22:18:00.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2010-06-11 22:18:00.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2010-06-11 22:18:00.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-06-11 22:18:00.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2010-06-11 22:18:00.000 Unknown request type! Default to capabilities. ---------------------- 2010-06-11 22:18:00.000 Destination hostname could not be determined ---------------------- 2010-06-11 22:18:00.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2010-06-11 22:18:00.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-06-11 22:18:00.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-06-11 22:18:00.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2010-06-11 22:18:00.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-06-11 22:18:00.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-06-11 22:18:00.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-06-12 07:20:15.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2010-06-12 05:20:15.000 Logging started. ---------------------- 2010-06-12 05:20:15.000 BioCASe protocol used. ---------------------- 2010-06-12 05:20:15.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-06-12 05:20:15.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-06-12 05:20:15.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-06-12 05:20:15.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2010-06-12 05:20:15.000 Unknown request type! Default to capabilities. ---------------------- 2010-06-12 05:20:15.000 Destination hostname could not be determined ---------------------- 2010-06-12 05:20:15.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2010-06-12 05:20:15.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2010-06-12 05:20:15.000 Reset CMF convenience cache data hash. ---------------------- 2010-06-12 05:20:15.000 Loading CMF from the source XML file. ---------------------- 2010-06-12 05:20:15.000 CMF Version 2.1 detected. ---------------------- 2010-06-12 05:20:15.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2010-06-12 05:20:15.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2010-06-12 05:20:15.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-06-12 05:20:16.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-06-12 05:20:16.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-06-12 05:20:16.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-06-12 05:20:16.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-06-12 05:20:16.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2010-06-13 00:18:41.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2010-06-12 22:18:41.000 Logging started. ---------------------- 2010-06-12 22:18:41.000 BioCASe protocol used. ---------------------- 2010-06-12 22:18:41.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2010-06-12 22:18:41.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2010-06-12 22:18:41.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-06-12 22:18:41.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2010-06-12 22:18:41.000 Unknown request type! Default to capabilities. ---------------------- 2010-06-12 22:18:41.000 Destination hostname could not be determined ---------------------- 2010-06-12 22:18:41.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2010-06-12 22:18:41.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-06-12 22:18:41.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-06-12 22:18:41.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2010-06-12 22:18:41.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-06-12 22:18:41.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-06-12 22:18:41.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-06-13 07:42:38.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2010-06-13 05:42:38.000 Logging started. ---------------------- 2010-06-13 05:42:38.000 BioCASe protocol used. ---------------------- 2010-06-13 05:42:38.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-06-13 05:42:38.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-06-13 05:42:38.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-06-13 05:42:39.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2010-06-13 05:42:39.000 Unknown request type! Default to capabilities. ---------------------- 2010-06-13 05:42:39.000 Destination hostname could not be determined ---------------------- 2010-06-13 05:42:39.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2010-06-13 05:42:39.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2010-06-13 05:42:39.000 Reset CMF convenience cache data hash. ---------------------- 2010-06-13 05:42:39.000 Loading CMF from the source XML file. ---------------------- 2010-06-13 05:42:39.000 CMF Version 2.1 detected. ---------------------- 2010-06-13 05:42:39.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2010-06-13 05:42:39.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2010-06-13 05:42:39.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-06-13 05:42:39.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-06-13 05:42:39.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-06-13 05:42:39.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-06-13 05:42:39.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-06-13 05:42:39.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-06-14 09:35:22.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- 87.168.211.88 to RMCA_Amphibians
2010-06-14T08:48:50+01:0087.168.211.88search
http://www.tdwg.org/schemas/abcd/1.2http://www.tdwg.org/schemas/abcd/1.2*Kenyafalse
### ERROR LOG The Logging Results: ---------------------- 2010-06-14 07:35:22.000 Logging started. ---------------------- 2010-06-14 07:35:22.000 BioCASe protocol used. ---------------------- 2010-06-14 07:35:22.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-06-14 07:35:22.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-06-14 07:35:22.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-06-14 07:35:22.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-06-14 07:35:22.000 All parameters found in the request: {'query': '
2010-06-14T08:48:50+01:0087.168.211.88search
http://www.tdwg.org/schemas/abcd/1.2http://www.tdwg.org/schemas/abcd/1.2*Kenyafalse
', 'request_string': '
2010-06-14T08:48:50+01:0087.168.211.88search
http://www.tdwg.org/schemas/abcd/1.2http://www.tdwg.org/schemas/abcd/1.2*Kenyafalse
'} ---------------------- 2010-06-14 07:35:22.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-06-14 07:35:22.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-06-14 07:35:22.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_1.20.xml' ---------------------- 2010-06-14 07:35:22.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-06-14 07:35:23.000 Pickled file is of latest revision. ---------------------- 2010-06-14 07:35:23.000 Original filter string parsed:
2010-06-14T08:48:50+01:0087.168.211.88search
http://www.tdwg.org/schemas/abcd/1.2http://www.tdwg.org/schemas/abcd/1.2*Kenyafalse
---------------------- 2010-06-14 07:35:23.000 Filter created: ("v_abcd2v06herpnet_trigger"."country" ILIKE *Kenya ) ---------------------- 2010-06-14 07:35:23.000 Compressed filter used: ("v_abcd2v06herpnet_trigger"."country" ILIKE *Kenya ) ---------------------- 2010-06-14 07:35:23.000 Record Identifier used: v_abcd2v06herpnet_trigger.pk(text) ---------------------- 2010-06-14 07:35:23.000 Use SQL LIMIT to limit the first result set of IDs only to the maximum of 100 records. ---------------------- 2010-06-14 07:35:23.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06herpnet_trigger"."pk" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" WHERE ("v_abcd2v06herpnet_trigger"."country" ILIKE '%Kenya' ) ORDER BY "v_abcd2v06herpnet_trigger"."pk" LIMIT 101' ---------------------- 2010-06-14 07:35:23.000 Hits: 11 ---------------------- 2010-06-14 07:35:23.000 Resulting Recordset: [[489516], [489517], [489989], [491938], [491939], [492716], [493261], [493276], [493377], [495603], [501054]] ---------------------- 2010-06-14 07:35:23.000 All RecIDs retrieved from DB: [489516, 489517, 489989, 491938, 491939, 492716, 493261, 493276, 493377, 495603, 501054] ---------------------- 2010-06-14 07:35:23.000 Executing SQL: 'SELECT "v_abcd2v06herpnet_trigger"."pk", "v_abcd2v06herpnet_trigger"."institutioncode", "v_abcd2v06herpnet_trigger"."collectioncode", "v_abcd2v06contactstechnical"."fullname", "v_abcd2v06contactstechnical"."mail", "datasetname"."statistics", "v_abcd2v06herpnet_trigger"."catalognumbertext", "v_abcd2v06herpnet_trigger"."datelastmodified", "v_abcd2v06manytomanyidentifications"."preferredflag", "v_abcd2v06higherrankbymanyidentifications"."rank", "v_abcd2v06higherrankbymanyidentifications"."taxonname", "v_abcd2v06manytomanyidentifications"."fullscientificnamestring", "v_abcd2v06manytomanyidentifications"."genus", "v_abcd2v06manytomanyidentifications"."species", "v_abcd2v06manytomanyidentifications"."subspecies", "v_abcd2v06manytomanyidentifications"."authorwithoutparenthesis", "v_abcd2v06manytomanyidentifications"."authorparenthesis", "v_abcd2v06herpnet_trigger"."identifiedby", "v_abcd2v06herpnet_trigger"."dateidentificationiso", "v_abcd2v06herpnet_trigger"."remarks", "v_abcd2v06herpnet_trigger"."identificationhistory", "v_abcd2v06herpnet_trigger"."ageclass", "v_abcd2v06herpnet_trigger"."sex", "v_abcd2v06herpnet_trigger"."preparations", "v_abcd2v06herpnet_trigger"."typestatus", "v_abcd2v06herpnet_trigger"."verbatimcollectingdate", "v_abcd2v06herpnet_trigger"."dateisobegin", "v_abcd2v06herpnet_trigger"."dateisoend", "v_abcd2v06herpnet_trigger"."collector", "v_abcd2v06herpnet_trigger"."locality", "v_abcd2v06herpnet_trigger"."country", "v_abcd2v06herpnet_trigger"."countryiso3166", "v_abcd2v06herpnet_trigger"."decimallongitude", "v_abcd2v06herpnet_trigger"."decimallatitude", "v_abcd2v06herpnet_trigger"."datum", "v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters", "v_abcd2v06herpnet_trigger"."georefmethod", "v_abcd2v06herpnet_trigger"."minimumelevationinmeters", "v_abcd2v06herpnet_trigger"."maximumelevationinmeters", "v_abcd2v06herpnet_trigger"."verbatimelevation", "v_abcd2v06herpnet_trigger"."fieldnotes", "v_abcd2v06herpnet_trigger"."individualcount", "v_abcd2v06herpnet_trigger"."pk", "v_abcd2v06contactstechnical"."id", "datasetname"."datasetname", "v_abcd2v06manytomanyidentifications"."pk", "v_abcd2v06higherrankbymanyidentifications"."pk" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE ("v_abcd2v06herpnet_trigger"."pk" IN ('489516', '489517', '489989', '491938', '491939', '492716', '493261', '493276', '493377', '495603', '501054')) ORDER BY "v_abcd2v06herpnet_trigger"."pk"' ---------------------- 2010-06-14 07:35:23.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 110, in doRequest (self.resultDOM, self.resultStatus) = operationObj.search(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 205, in search (recordset, recStatus) = self._getSearchResultList() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 344, in _getSearchResultList rs = self.execSelect( [recID] + self.CMFObject.allDBAttr, comparisonOperator('in', recID, IDs), orderByList=[recID]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 73, in execSelect return self.execSQL(sql, paras) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: missing FROM-clause entry for table "v_abcd2v06contactstechnical" ---------------------- 2010-06-14 07:35:23.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2010-06-14 18:49:45.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2010-06-14 16:49:45.000 Logging started. ---------------------- 2010-06-14 16:49:45.000 BioCASe protocol used. ---------------------- 2010-06-14 16:49:45.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2010-06-14 16:49:45.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2010-06-14 16:49:45.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-06-14 16:49:45.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2010-06-14 16:49:45.000 Unknown request type! Default to capabilities. ---------------------- 2010-06-14 16:49:45.000 Destination hostname could not be determined ---------------------- 2010-06-14 16:49:45.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2010-06-14 16:49:45.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-06-14 16:49:46.000 Pickled file is of latest revision. ---------------------- 2010-06-14 16:49:46.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2010-06-14 16:49:46.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2010-06-14 16:49:46.000 Reset CMF convenience cache data hash. ---------------------- 2010-06-14 16:49:46.000 Loading CMF from the source XML file. ---------------------- 2010-06-14 16:49:46.000 CMF Version 2.1 detected. ---------------------- 2010-06-14 16:49:46.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2010-06-14 16:49:46.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2010-06-14 16:49:46.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-06-14 16:49:46.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-06-14 16:49:46.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-06-18 01:35:54.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-06-18 00:57:48.97 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-06-17 23:35:54.000 Logging started. ---------------------- 2010-06-17 23:35:54.000 BioCASe protocol used. ---------------------- 2010-06-17 23:35:54.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-06-17 23:35:54.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-06-17 23:35:54.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-06-17 23:35:54.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-06-17 23:35:54.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-06-18 00:57:48.97\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-06-18 00:57:48.97\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-06-18 00:57:48.97\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-06-17 23:35:54.000 Found online debuglevel setting: 1 ---------------------- 2010-06-17 23:35:54.000 Setting debuglevel from 0 to 1 ---------------------- 2010-06-17 23:35:54.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-06-17 23:35:54.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-06-17 23:35:54.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-06-17 23:35:54.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-06-17 23:35:54.000 Pickled file is of latest revision. ---------------------- 2010-06-17 23:35:54.000 Original filter string parsed:
0.1 2010-06-18 00:57:48.97 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-06-17 23:35:54.000 Filter created: None ---------------------- 2010-06-17 23:35:54.000 Compressed filter used: None ---------------------- 2010-06-17 23:35:54.000 Counting total matched records with filter=None ---------------------- 2010-06-17 23:35:54.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-06-17 23:35:55.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-06-18 03:57:25.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2010-06-18 01:57:25.000 Logging started. ---------------------- 2010-06-18 01:57:25.000 BioCASe protocol used. ---------------------- 2010-06-18 01:57:25.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-06-18 01:57:25.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-06-18 01:57:25.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-06-18 01:57:25.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2010-06-18 01:57:25.000 Unknown request type! Default to capabilities. ---------------------- 2010-06-18 01:57:25.000 Destination hostname could not be determined ---------------------- 2010-06-18 01:57:25.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2010-06-18 01:57:25.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2010-06-18 01:57:25.000 Reset CMF convenience cache data hash. ---------------------- 2010-06-18 01:57:25.000 Loading CMF from the source XML file. ---------------------- 2010-06-18 01:57:25.000 CMF Version 2.1 detected. ---------------------- 2010-06-18 01:57:26.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2010-06-18 01:57:26.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2010-06-18 01:57:26.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-06-18 01:57:26.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-06-18 01:57:26.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-06-18 01:57:26.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-06-18 01:57:26.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-06-18 01:57:26.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2010-06-20 10:21:05.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2010-06-20 08:21:05.000 Logging started. ---------------------- 2010-06-20 08:21:05.000 BioCASe protocol used. ---------------------- 2010-06-20 08:21:05.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2010-06-20 08:21:05.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2010-06-20 08:21:05.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-06-20 08:21:05.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2010-06-20 08:21:05.000 Unknown request type! Default to capabilities. ---------------------- 2010-06-20 08:21:05.000 Destination hostname could not be determined ---------------------- 2010-06-20 08:21:05.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2010-06-20 08:21:05.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-06-20 08:21:05.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-06-20 08:21:05.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2010-06-20 08:21:05.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-06-20 08:21:05.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-06-20 08:21:05.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2010-06-21 13:02:05.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2010-06-21 11:02:05.000 Logging started. ---------------------- 2010-06-21 11:02:05.000 BioCASe protocol used. ---------------------- 2010-06-21 11:02:05.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2010-06-21 11:02:05.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2010-06-21 11:02:05.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-06-21 11:02:05.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2010-06-21 11:02:05.000 Unknown request type! Default to capabilities. ---------------------- 2010-06-21 11:02:05.000 Destination hostname could not be determined ---------------------- 2010-06-21 11:02:05.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2010-06-21 11:02:05.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-06-21 11:02:05.000 Pickled file is of latest revision. ---------------------- 2010-06-21 11:02:05.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2010-06-21 11:02:05.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2010-06-21 11:02:05.000 Reset CMF convenience cache data hash. ---------------------- 2010-06-21 11:02:05.000 Loading CMF from the source XML file. ---------------------- 2010-06-21 11:02:05.000 CMF Version 2.1 detected. ---------------------- 2010-06-21 11:02:05.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2010-06-21 11:02:05.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2010-06-21 11:02:05.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-06-21 11:02:05.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-06-21 11:02:05.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-06-25 01:35:36.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-06-25 00:57:52.51 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-06-24 23:35:36.000 Logging started. ---------------------- 2010-06-24 23:35:36.000 BioCASe protocol used. ---------------------- 2010-06-24 23:35:36.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-06-24 23:35:36.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-06-24 23:35:36.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-06-24 23:35:36.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-06-24 23:35:36.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-06-25 00:57:52.51\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-06-25 00:57:52.51\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-06-25 00:57:52.51\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-06-24 23:35:36.000 Found online debuglevel setting: 1 ---------------------- 2010-06-24 23:35:36.000 Setting debuglevel from 0 to 1 ---------------------- 2010-06-24 23:35:36.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-06-24 23:35:36.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-06-24 23:35:36.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-06-24 23:35:36.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-06-24 23:35:36.000 Pickled file is of latest revision. ---------------------- 2010-06-24 23:35:36.000 Original filter string parsed:
0.1 2010-06-25 00:57:52.51 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-06-24 23:35:36.000 Filter created: None ---------------------- 2010-06-24 23:35:36.000 Compressed filter used: None ---------------------- 2010-06-24 23:35:36.000 Counting total matched records with filter=None ---------------------- 2010-06-24 23:35:36.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-06-24 23:35:36.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-06-29 07:51:50.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-06-29 07:51:49.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA ryreyx@vvxndx.com USA egcoarj mzvpdb 73455 UW9js ryreyx@vvxndx.com ryreyx@vvxndx.com egcoarj
### ERROR LOG The Logging Results: ---------------------- 2010-06-29 05:51:50.000 Logging started. ---------------------- 2010-06-29 05:51:50.000 BioCASe protocol used. ---------------------- 2010-06-29 05:51:50.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-06-29 05:51:50.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-06-29 05:51:50.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-06-29 05:51:50.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-06-29 05:51:50.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-06-29 07:51:49.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n ryreyx@vvxndx.com\n USA\n egcoarj\n mzvpdb\n 73455\n UW9js\n ryreyx@vvxndx.com\n ryreyx@vvxndx.com\n egcoarj\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-06-29 07:51:49.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n ryreyx@vvxndx.com\n USA\n egcoarj\n mzvpdb\n 73455\n UW9js\n ryreyx@vvxndx.com\n ryreyx@vvxndx.com\n egcoarj\n\n\n\n \n
'} ---------------------- 2010-06-29 05:51:50.000 Found online debuglevel setting: 1 ---------------------- 2010-06-29 05:51:50.000 Setting debuglevel from 0 to 1 ---------------------- 2010-06-29 05:51:50.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-06-29 05:51:50.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-06-29 05:51:50.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-06-29 05:51:50.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-06-29 05:51:50.000 Pickled file is of latest revision. ---------------------- 2010-06-29 05:51:50.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-06-29 05:51:50.000 Original filter string parsed:
2.4.2 2010-06-29 07:51:49.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA ryreyx@vvxndx.com USA egcoarj mzvpdb 73455 UW9js ryreyx@vvxndx.com ryreyx@vvxndx.com egcoarj
---------------------- 2010-06-29 05:51:50.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ryreyx@vvxndx.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE egcoarj ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE mzvpdb ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 73455 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE UW9js ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ryreyx@vvxndx.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ryreyx@vvxndx.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE egcoarj )) ---------------------- 2010-06-29 05:51:50.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ryreyx@vvxndx.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE egcoarj ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE mzvpdb ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 73455 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE UW9js ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ryreyx@vvxndx.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ryreyx@vvxndx.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE egcoarj )) ---------------------- 2010-06-29 05:51:50.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ryreyx@vvxndx.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE egcoarj ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE mzvpdb ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 73455 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE UW9js ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ryreyx@vvxndx.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ryreyx@vvxndx.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE egcoarj )) ---------------------- 2010-06-29 05:51:50.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ryreyx@vvxndx.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE egcoarj ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE mzvpdb ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 73455 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE UW9js ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ryreyx@vvxndx.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ryreyx@vvxndx.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE egcoarj )) ---------------------- 2010-06-29 05:51:50.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-06-29 05:51:50.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'ryreyx@vvxndx.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'egcoarj' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'mzvpdb' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '73455' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'UW9js' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'ryreyx@vvxndx.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'ryreyx@vvxndx.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'egcoarj' ))' ---------------------- 2010-06-29 05:51:51.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "ryreyx@vvxndx.com" ---------------------- 2010-06-29 05:51:51.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-06-30 18:19:06.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-06-30 18:19:06.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA ogskuu@ekhncs.com USA ibwccla sibltiv 953454 PcT01 ogskuu@ekhncs.com ogskuu@ekhncs.com ibwccla
### ERROR LOG The Logging Results: ---------------------- 2010-06-30 16:19:06.000 Logging started. ---------------------- 2010-06-30 16:19:07.000 BioCASe protocol used. ---------------------- 2010-06-30 16:19:07.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-06-30 16:19:07.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-06-30 16:19:07.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-06-30 16:19:07.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-06-30 16:19:07.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-06-30 18:19:06.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n ogskuu@ekhncs.com\n USA\n ibwccla\n sibltiv\n 953454\n PcT01\n ogskuu@ekhncs.com\n ogskuu@ekhncs.com\n ibwccla\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-06-30 18:19:06.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n ogskuu@ekhncs.com\n USA\n ibwccla\n sibltiv\n 953454\n PcT01\n ogskuu@ekhncs.com\n ogskuu@ekhncs.com\n ibwccla\n\n\n\n \n
'} ---------------------- 2010-06-30 16:19:07.000 Found online debuglevel setting: 1 ---------------------- 2010-06-30 16:19:07.000 Setting debuglevel from 0 to 1 ---------------------- 2010-06-30 16:19:07.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-06-30 16:19:07.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-06-30 16:19:07.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-06-30 16:19:07.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-06-30 16:19:07.000 Pickled file is of latest revision. ---------------------- 2010-06-30 16:19:07.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-06-30 16:19:07.000 Original filter string parsed:
2.4.2 2010-06-30 18:19:06.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA ogskuu@ekhncs.com USA ibwccla sibltiv 953454 PcT01 ogskuu@ekhncs.com ogskuu@ekhncs.com ibwccla
---------------------- 2010-06-30 16:19:07.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ogskuu@ekhncs.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE ibwccla ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE sibltiv ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 953454 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE PcT01 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ogskuu@ekhncs.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ogskuu@ekhncs.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE ibwccla )) ---------------------- 2010-06-30 16:19:07.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ogskuu@ekhncs.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE ibwccla ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE sibltiv ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 953454 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE PcT01 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ogskuu@ekhncs.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ogskuu@ekhncs.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE ibwccla )) ---------------------- 2010-06-30 16:19:07.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ogskuu@ekhncs.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE ibwccla ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE sibltiv ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 953454 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE PcT01 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ogskuu@ekhncs.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ogskuu@ekhncs.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE ibwccla )) ---------------------- 2010-06-30 16:19:07.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ogskuu@ekhncs.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE ibwccla ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE sibltiv ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 953454 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE PcT01 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ogskuu@ekhncs.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ogskuu@ekhncs.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE ibwccla )) ---------------------- 2010-06-30 16:19:07.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-06-30 16:19:07.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'ogskuu@ekhncs.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'ibwccla' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'sibltiv' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '953454' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'PcT01' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'ogskuu@ekhncs.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'ogskuu@ekhncs.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'ibwccla' ))' ---------------------- 2010-06-30 16:19:07.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "ogskuu@ekhncs.com" ---------------------- 2010-06-30 16:19:07.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-07-01 13:49:52.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-07-01 13:49:52.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA rkwssw@hbhjwh.com USA zssmor ejcvfyoo 816376 r0xLQ rkwssw@hbhjwh.com rkwssw@hbhjwh.com zssmor
### ERROR LOG The Logging Results: ---------------------- 2010-07-01 11:49:52.000 Logging started. ---------------------- 2010-07-01 11:49:52.000 BioCASe protocol used. ---------------------- 2010-07-01 11:49:52.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-07-01 11:49:52.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-07-01 11:49:52.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-07-01 11:49:52.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-07-01 11:49:52.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-07-01 13:49:52.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n rkwssw@hbhjwh.com\n USA\n zssmor\n ejcvfyoo\n 816376\n r0xLQ\n rkwssw@hbhjwh.com\n rkwssw@hbhjwh.com\n zssmor\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-07-01 13:49:52.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n rkwssw@hbhjwh.com\n USA\n zssmor\n ejcvfyoo\n 816376\n r0xLQ\n rkwssw@hbhjwh.com\n rkwssw@hbhjwh.com\n zssmor\n\n\n\n \n
'} ---------------------- 2010-07-01 11:49:52.000 Found online debuglevel setting: 1 ---------------------- 2010-07-01 11:49:52.000 Setting debuglevel from 0 to 1 ---------------------- 2010-07-01 11:49:52.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-07-01 11:49:52.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-07-01 11:49:52.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-07-01 11:49:52.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-07-01 11:49:53.000 Pickled file is of latest revision. ---------------------- 2010-07-01 11:49:53.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-07-01 11:49:53.000 Original filter string parsed:
2.4.2 2010-07-01 13:49:52.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA rkwssw@hbhjwh.com USA zssmor ejcvfyoo 816376 r0xLQ rkwssw@hbhjwh.com rkwssw@hbhjwh.com zssmor
---------------------- 2010-07-01 11:49:53.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = rkwssw@hbhjwh.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE zssmor ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE ejcvfyoo ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 816376 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE r0xLQ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = rkwssw@hbhjwh.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = rkwssw@hbhjwh.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE zssmor )) ---------------------- 2010-07-01 11:49:53.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = rkwssw@hbhjwh.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE zssmor ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE ejcvfyoo ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 816376 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE r0xLQ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = rkwssw@hbhjwh.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = rkwssw@hbhjwh.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE zssmor )) ---------------------- 2010-07-01 11:49:53.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = rkwssw@hbhjwh.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE zssmor ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE ejcvfyoo ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 816376 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE r0xLQ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = rkwssw@hbhjwh.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = rkwssw@hbhjwh.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE zssmor )) ---------------------- 2010-07-01 11:49:53.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = rkwssw@hbhjwh.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE zssmor ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE ejcvfyoo ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 816376 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE r0xLQ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = rkwssw@hbhjwh.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = rkwssw@hbhjwh.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE zssmor )) ---------------------- 2010-07-01 11:49:53.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-07-01 11:49:53.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'rkwssw@hbhjwh.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'zssmor' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'ejcvfyoo' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '816376' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'r0xLQ' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'rkwssw@hbhjwh.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'rkwssw@hbhjwh.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'zssmor' ))' ---------------------- 2010-07-01 11:49:53.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "rkwssw@hbhjwh.com" ---------------------- 2010-07-01 11:49:53.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-07-02 01:35:45.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-07-02 00:58:23.16 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-07-01 23:35:45.000 Logging started. ---------------------- 2010-07-01 23:35:45.000 BioCASe protocol used. ---------------------- 2010-07-01 23:35:45.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-07-01 23:35:45.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-07-01 23:35:45.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-07-01 23:35:45.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-07-01 23:35:45.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-07-02 00:58:23.16\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-07-02 00:58:23.16\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-07-02 00:58:23.16\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-07-01 23:35:45.000 Found online debuglevel setting: 1 ---------------------- 2010-07-01 23:35:45.000 Setting debuglevel from 0 to 1 ---------------------- 2010-07-01 23:35:45.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-07-01 23:35:45.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-07-01 23:35:45.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-07-01 23:35:45.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-07-01 23:35:45.000 Pickled file is of latest revision. ---------------------- 2010-07-01 23:35:45.000 Original filter string parsed:
0.1 2010-07-02 00:58:23.16 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-07-01 23:35:45.000 Filter created: None ---------------------- 2010-07-01 23:35:45.000 Compressed filter used: None ---------------------- 2010-07-01 23:35:45.000 Counting total matched records with filter=None ---------------------- 2010-07-01 23:35:45.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-07-01 23:35:45.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-07-03 14:13:22.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians20070608
2.4.2 2010-07-03 14:13:22.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA khtjjd@netsnv.com USA ispmyvdci USA 859086 cA8FbT khtjjd@netsnv.com khtjjd@netsnv.com ispmyvdci
### ERROR LOG The Logging Results: ---------------------- 2010-07-03 12:13:22.000 Logging started. ---------------------- 2010-07-03 12:13:22.000 BioCASe protocol used. ---------------------- 2010-07-03 12:13:22.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-07-03 12:13:22.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-07-03 12:13:22.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-07-03 12:13:22.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-07-03 12:13:22.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-07-03 14:13:22.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n khtjjd@netsnv.com\n USA\n ispmyvdci\n USA\n 859086\n cA8FbT\n khtjjd@netsnv.com\n khtjjd@netsnv.com\n ispmyvdci\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-07-03 14:13:22.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n khtjjd@netsnv.com\n USA\n ispmyvdci\n USA\n 859086\n cA8FbT\n khtjjd@netsnv.com\n khtjjd@netsnv.com\n ispmyvdci\n\n\n\n \n
'} ---------------------- 2010-07-03 12:13:22.000 Found online debuglevel setting: 1 ---------------------- 2010-07-03 12:13:22.000 Setting debuglevel from 0 to 1 ---------------------- 2010-07-03 12:13:23.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-07-03 12:13:23.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-07-03 12:13:23.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-07-03 12:13:23.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-07-03 12:13:23.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 231, in getCMFobject CMFObject.loadCMFdata(self.psfObj.getCMFfilename(namespace), psfObj=self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-07-03 12:13:23.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 118, in scan self.CMFObject = self.getCMFobject(self.requestObj.reqSchema, altRootTableKey=self.altRootTableAlias) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 237, in getCMFobject raise CMFError(log=self.logObj, cmf=namespace) CMFError: ---------------------- 2010-07-03 12:13:23.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-07-09 01:41:15.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-07-09 01:04:14.74 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-07-08 23:41:15.000 Logging started. ---------------------- 2010-07-08 23:41:15.000 BioCASe protocol used. ---------------------- 2010-07-08 23:41:15.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-07-08 23:41:15.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-07-08 23:41:15.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-07-08 23:41:15.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-07-08 23:41:15.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-07-09 01:04:14.74\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-07-09 01:04:14.74\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-07-09 01:04:14.74\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-07-08 23:41:15.000 Found online debuglevel setting: 1 ---------------------- 2010-07-08 23:41:15.000 Setting debuglevel from 0 to 1 ---------------------- 2010-07-08 23:41:15.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-07-08 23:41:15.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-07-08 23:41:15.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-07-08 23:41:15.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-07-08 23:41:15.000 Pickled file is of latest revision. ---------------------- 2010-07-08 23:41:15.000 Original filter string parsed:
0.1 2010-07-09 01:04:14.74 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-07-08 23:41:15.000 Filter created: None ---------------------- 2010-07-08 23:41:15.000 Compressed filter used: None ---------------------- 2010-07-08 23:41:15.000 Counting total matched records with filter=None ---------------------- 2010-07-08 23:41:15.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-07-08 23:41:16.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-07-10 04:27:14.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-07-10 04:27:14.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA goefss@vpmrkt.com USA jdziawrf kxbywe 7541 YTX2mj goefss@vpmrkt.com goefss@vpmrkt.com jdziawrf
### ERROR LOG The Logging Results: ---------------------- 2010-07-10 02:27:14.000 Logging started. ---------------------- 2010-07-10 02:27:14.000 BioCASe protocol used. ---------------------- 2010-07-10 02:27:14.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-07-10 02:27:14.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-07-10 02:27:14.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-07-10 02:27:15.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-07-10 02:27:15.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-07-10 04:27:14.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n goefss@vpmrkt.com\n USA\n jdziawrf\n kxbywe\n 7541\n YTX2mj\n goefss@vpmrkt.com\n goefss@vpmrkt.com\n jdziawrf\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-07-10 04:27:14.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n goefss@vpmrkt.com\n USA\n jdziawrf\n kxbywe\n 7541\n YTX2mj\n goefss@vpmrkt.com\n goefss@vpmrkt.com\n jdziawrf\n\n\n\n \n
'} ---------------------- 2010-07-10 02:27:15.000 Found online debuglevel setting: 1 ---------------------- 2010-07-10 02:27:15.000 Setting debuglevel from 0 to 1 ---------------------- 2010-07-10 02:27:15.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-07-10 02:27:15.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-07-10 02:27:15.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-07-10 02:27:15.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-07-10 02:27:15.000 Pickled file is of latest revision. ---------------------- 2010-07-10 02:27:15.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-07-10 02:27:15.000 Original filter string parsed:
2.4.2 2010-07-10 04:27:14.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA goefss@vpmrkt.com USA jdziawrf kxbywe 7541 YTX2mj goefss@vpmrkt.com goefss@vpmrkt.com jdziawrf
---------------------- 2010-07-10 02:27:15.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = goefss@vpmrkt.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE jdziawrf ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE kxbywe ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 7541 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE YTX2mj ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = goefss@vpmrkt.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = goefss@vpmrkt.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jdziawrf )) ---------------------- 2010-07-10 02:27:15.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = goefss@vpmrkt.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE jdziawrf ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE kxbywe ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 7541 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE YTX2mj ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = goefss@vpmrkt.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = goefss@vpmrkt.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jdziawrf )) ---------------------- 2010-07-10 02:27:15.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = goefss@vpmrkt.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE jdziawrf ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE kxbywe ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 7541 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE YTX2mj ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = goefss@vpmrkt.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = goefss@vpmrkt.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jdziawrf )) ---------------------- 2010-07-10 02:27:15.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = goefss@vpmrkt.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE jdziawrf ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE kxbywe ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 7541 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE YTX2mj ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = goefss@vpmrkt.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = goefss@vpmrkt.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jdziawrf )) ---------------------- 2010-07-10 02:27:15.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-07-10 02:27:15.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'goefss@vpmrkt.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'jdziawrf' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'kxbywe' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '7541' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'YTX2mj' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'goefss@vpmrkt.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'goefss@vpmrkt.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'jdziawrf' ))' ---------------------- 2010-07-10 02:27:15.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "goefss@vpmrkt.com" ---------------------- 2010-07-10 02:27:15.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-07-11 00:12:21.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-07-11 00:12:20.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA exfcnh@xkcxqy.com USA bllcqm yurmwolk 99601 C0fXV exfcnh@xkcxqy.com exfcnh@xkcxqy.com bllcqm
### ERROR LOG The Logging Results: ---------------------- 2010-07-10 22:12:21.000 Logging started. ---------------------- 2010-07-10 22:12:21.000 BioCASe protocol used. ---------------------- 2010-07-10 22:12:21.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-07-10 22:12:21.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-07-10 22:12:21.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-07-10 22:12:21.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-07-10 22:12:21.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-07-11 00:12:20.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n exfcnh@xkcxqy.com\n USA\n bllcqm\n yurmwolk\n 99601\n C0fXV\n exfcnh@xkcxqy.com\n exfcnh@xkcxqy.com\n bllcqm\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-07-11 00:12:20.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n exfcnh@xkcxqy.com\n USA\n bllcqm\n yurmwolk\n 99601\n C0fXV\n exfcnh@xkcxqy.com\n exfcnh@xkcxqy.com\n bllcqm\n\n\n\n \n
'} ---------------------- 2010-07-10 22:12:21.000 Found online debuglevel setting: 1 ---------------------- 2010-07-10 22:12:21.000 Setting debuglevel from 0 to 1 ---------------------- 2010-07-10 22:12:21.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-07-10 22:12:21.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-07-10 22:12:21.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-07-10 22:12:21.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-07-10 22:12:22.000 Pickled file is of latest revision. ---------------------- 2010-07-10 22:12:22.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-07-10 22:12:22.000 Original filter string parsed:
2.4.2 2010-07-11 00:12:20.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA exfcnh@xkcxqy.com USA bllcqm yurmwolk 99601 C0fXV exfcnh@xkcxqy.com exfcnh@xkcxqy.com bllcqm
---------------------- 2010-07-10 22:12:22.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = exfcnh@xkcxqy.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE bllcqm ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE yurmwolk ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 99601 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE C0fXV ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = exfcnh@xkcxqy.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = exfcnh@xkcxqy.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE bllcqm )) ---------------------- 2010-07-10 22:12:22.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = exfcnh@xkcxqy.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE bllcqm ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE yurmwolk ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 99601 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE C0fXV ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = exfcnh@xkcxqy.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = exfcnh@xkcxqy.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE bllcqm )) ---------------------- 2010-07-10 22:12:22.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = exfcnh@xkcxqy.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE bllcqm ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE yurmwolk ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 99601 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE C0fXV ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = exfcnh@xkcxqy.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = exfcnh@xkcxqy.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE bllcqm )) ---------------------- 2010-07-10 22:12:22.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = exfcnh@xkcxqy.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE bllcqm ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE yurmwolk ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 99601 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE C0fXV ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = exfcnh@xkcxqy.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = exfcnh@xkcxqy.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE bllcqm )) ---------------------- 2010-07-10 22:12:22.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-07-10 22:12:22.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'exfcnh@xkcxqy.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'bllcqm' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'yurmwolk' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '99601' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'C0fXV' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'exfcnh@xkcxqy.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'exfcnh@xkcxqy.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'bllcqm' ))' ---------------------- 2010-07-10 22:12:22.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "exfcnh@xkcxqy.com" ---------------------- 2010-07-10 22:12:22.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-07-15 16:15:09.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2010-07-15 14:15:09.000 Logging started. ---------------------- 2010-07-15 14:15:09.000 BioCASe protocol used. ---------------------- 2010-07-15 14:15:09.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-07-15 14:15:09.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-07-15 14:15:09.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-07-15 14:15:09.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2010-07-15 14:15:09.000 Unknown request type! Default to capabilities. ---------------------- 2010-07-15 14:15:09.000 Destination hostname could not be determined ---------------------- 2010-07-15 14:15:09.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2010-07-15 14:15:09.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2010-07-15 14:15:09.000 Reset CMF convenience cache data hash. ---------------------- 2010-07-15 14:15:10.000 Loading CMF from the source XML file. ---------------------- 2010-07-15 14:15:10.000 CMF Version 2.1 detected. ---------------------- 2010-07-15 14:15:10.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2010-07-15 14:15:10.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2010-07-15 14:15:10.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-07-15 14:15:10.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-07-15 14:15:10.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-07-15 14:15:10.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-07-15 14:15:10.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-07-15 14:15:10.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-07-16 01:37:46.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-07-16 01:01:07.43 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-07-15 23:37:46.000 Logging started. ---------------------- 2010-07-15 23:37:46.000 BioCASe protocol used. ---------------------- 2010-07-15 23:37:46.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-07-15 23:37:46.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-07-15 23:37:46.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-07-15 23:37:46.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-07-15 23:37:46.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-07-16 01:01:07.43\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-07-16 01:01:07.43\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-07-16 01:01:07.43\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-07-15 23:37:46.000 Found online debuglevel setting: 1 ---------------------- 2010-07-15 23:37:46.000 Setting debuglevel from 0 to 1 ---------------------- 2010-07-15 23:37:46.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-07-15 23:37:46.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-07-15 23:37:46.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-07-15 23:37:46.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-07-15 23:37:47.000 Pickled file is of latest revision. ---------------------- 2010-07-15 23:37:47.000 Original filter string parsed:
0.1 2010-07-16 01:01:07.43 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-07-15 23:37:47.000 Filter created: None ---------------------- 2010-07-15 23:37:47.000 Compressed filter used: None ---------------------- 2010-07-15 23:37:47.000 Counting total matched records with filter=None ---------------------- 2010-07-15 23:37:47.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-07-15 23:37:47.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-07-23 01:37:26.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-07-23 01:01:09.95 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-07-22 23:37:26.000 Logging started. ---------------------- 2010-07-22 23:37:27.000 BioCASe protocol used. ---------------------- 2010-07-22 23:37:27.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-07-22 23:37:27.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-07-22 23:37:27.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-07-22 23:37:27.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-07-22 23:37:27.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-07-23 01:01:09.95\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-07-23 01:01:09.95\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-07-23 01:01:09.95\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-07-22 23:37:27.000 Found online debuglevel setting: 1 ---------------------- 2010-07-22 23:37:27.000 Setting debuglevel from 0 to 1 ---------------------- 2010-07-22 23:37:27.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-07-22 23:37:27.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-07-22 23:37:27.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-07-22 23:37:27.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-07-22 23:37:27.000 Pickled file is of latest revision. ---------------------- 2010-07-22 23:37:27.000 Original filter string parsed:
0.1 2010-07-23 01:01:09.95 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-07-22 23:37:27.000 Filter created: None ---------------------- 2010-07-22 23:37:27.000 Compressed filter used: None ---------------------- 2010-07-22 23:37:27.000 Counting total matched records with filter=None ---------------------- 2010-07-22 23:37:27.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-07-22 23:37:27.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-07-25 18:02:07.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-07-25 18:02:06.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA gkgoia@lrlflx.com USA eagjxg USA 97310 USA gkgoia@lrlflx.com eagjxg eagjxg
### ERROR LOG The Logging Results: ---------------------- 2010-07-25 16:02:07.000 Logging started. ---------------------- 2010-07-25 16:02:07.000 BioCASe protocol used. ---------------------- 2010-07-25 16:02:07.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-07-25 16:02:07.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-07-25 16:02:07.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-07-25 16:02:07.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-07-25 16:02:07.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-07-25 18:02:06.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n gkgoia@lrlflx.com\n USA\n eagjxg\n USA\n 97310\n USA\n gkgoia@lrlflx.com\n eagjxg\n eagjxg\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-07-25 18:02:06.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n gkgoia@lrlflx.com\n USA\n eagjxg\n USA\n 97310\n USA\n gkgoia@lrlflx.com\n eagjxg\n eagjxg\n\n\n\n \n
'} ---------------------- 2010-07-25 16:02:07.000 Found online debuglevel setting: 1 ---------------------- 2010-07-25 16:02:07.000 Setting debuglevel from 0 to 1 ---------------------- 2010-07-25 16:02:07.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-07-25 16:02:07.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-07-25 16:02:07.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-07-25 16:02:07.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-07-25 16:02:08.000 Pickled file is of latest revision. ---------------------- 2010-07-25 16:02:08.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-07-25 16:02:08.000 Original filter string parsed:
2.4.2 2010-07-25 18:02:06.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA gkgoia@lrlflx.com USA eagjxg USA 97310 USA gkgoia@lrlflx.com eagjxg eagjxg
---------------------- 2010-07-25 16:02:08.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = gkgoia@lrlflx.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE eagjxg ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 97310 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = gkgoia@lrlflx.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = eagjxg ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE eagjxg )) ---------------------- 2010-07-25 16:02:08.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = gkgoia@lrlflx.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE eagjxg ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 97310 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = gkgoia@lrlflx.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = eagjxg ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE eagjxg )) ---------------------- 2010-07-25 16:02:08.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = gkgoia@lrlflx.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE eagjxg ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 97310 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = gkgoia@lrlflx.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = eagjxg ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE eagjxg )) ---------------------- 2010-07-25 16:02:08.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = gkgoia@lrlflx.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE eagjxg ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 97310 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = gkgoia@lrlflx.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = eagjxg ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE eagjxg )) ---------------------- 2010-07-25 16:02:08.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-07-25 16:02:08.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'gkgoia@lrlflx.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'eagjxg' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '97310' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'gkgoia@lrlflx.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'eagjxg' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'eagjxg' ))' ---------------------- 2010-07-25 16:02:08.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "gkgoia@lrlflx.com" ---------------------- 2010-07-25 16:02:08.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-07-30 01:30:46.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-07-30 00:54:51.15 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-07-29 23:30:46.000 Logging started. ---------------------- 2010-07-29 23:30:46.000 BioCASe protocol used. ---------------------- 2010-07-29 23:30:46.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-07-29 23:30:46.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-07-29 23:30:46.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-07-29 23:30:46.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-07-29 23:30:46.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-07-30 00:54:51.15\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-07-30 00:54:51.15\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-07-30 00:54:51.15\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-07-29 23:30:46.000 Found online debuglevel setting: 1 ---------------------- 2010-07-29 23:30:46.000 Setting debuglevel from 0 to 1 ---------------------- 2010-07-29 23:30:46.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-07-29 23:30:46.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-07-29 23:30:46.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-07-29 23:30:46.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-07-29 23:30:46.000 Pickled file is of latest revision. ---------------------- 2010-07-29 23:30:46.000 Original filter string parsed:
0.1 2010-07-30 00:54:51.15 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-07-29 23:30:46.000 Filter created: None ---------------------- 2010-07-29 23:30:46.000 Compressed filter used: None ---------------------- 2010-07-29 23:30:46.000 Counting total matched records with filter=None ---------------------- 2010-07-29 23:30:46.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-07-29 23:30:46.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-08-03 03:18:08.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-08-03 03:18:07.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA xebxla@yyzlju.com USA azdglml USA 71178 USA xebxla@yyzlju.com azdglml azdglml
### ERROR LOG The Logging Results: ---------------------- 2010-08-03 01:18:08.000 Logging started. ---------------------- 2010-08-03 01:18:08.000 BioCASe protocol used. ---------------------- 2010-08-03 01:18:08.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-08-03 01:18:08.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-08-03 01:18:08.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-08-03 01:18:08.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-08-03 01:18:08.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-08-03 03:18:07.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n xebxla@yyzlju.com\n USA\n azdglml\n USA\n 71178\n USA\n xebxla@yyzlju.com\n azdglml\n azdglml\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-08-03 03:18:07.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n xebxla@yyzlju.com\n USA\n azdglml\n USA\n 71178\n USA\n xebxla@yyzlju.com\n azdglml\n azdglml\n\n\n\n \n
'} ---------------------- 2010-08-03 01:18:08.000 Found online debuglevel setting: 1 ---------------------- 2010-08-03 01:18:08.000 Setting debuglevel from 0 to 1 ---------------------- 2010-08-03 01:18:08.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-08-03 01:18:08.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-08-03 01:18:08.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-08-03 01:18:08.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-08-03 01:18:08.000 Pickled file is of latest revision. ---------------------- 2010-08-03 01:18:08.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-08-03 01:18:08.000 Original filter string parsed:
2.4.2 2010-08-03 03:18:07.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA xebxla@yyzlju.com USA azdglml USA 71178 USA xebxla@yyzlju.com azdglml azdglml
---------------------- 2010-08-03 01:18:08.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = xebxla@yyzlju.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE azdglml ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 71178 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = xebxla@yyzlju.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = azdglml ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE azdglml )) ---------------------- 2010-08-03 01:18:08.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = xebxla@yyzlju.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE azdglml ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 71178 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = xebxla@yyzlju.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = azdglml ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE azdglml )) ---------------------- 2010-08-03 01:18:08.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = xebxla@yyzlju.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE azdglml ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 71178 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = xebxla@yyzlju.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = azdglml ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE azdglml )) ---------------------- 2010-08-03 01:18:08.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = xebxla@yyzlju.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE azdglml ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 71178 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = xebxla@yyzlju.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = azdglml ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE azdglml )) ---------------------- 2010-08-03 01:18:08.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-08-03 01:18:08.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'xebxla@yyzlju.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'azdglml' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '71178' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'xebxla@yyzlju.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'azdglml' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'azdglml' ))' ---------------------- 2010-08-03 01:18:08.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "xebxla@yyzlju.com" ---------------------- 2010-08-03 01:18:09.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-08-03 07:17:31.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2010-08-03 05:17:31.000 Logging started. ---------------------- 2010-08-03 05:17:32.000 BioCASe protocol used. ---------------------- 2010-08-03 05:17:32.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-08-03 05:17:32.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-08-03 05:17:32.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-08-03 05:17:32.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2010-08-03 05:17:32.000 Unknown request type! Default to capabilities. ---------------------- 2010-08-03 05:17:32.000 Destination hostname could not be determined ---------------------- 2010-08-03 05:17:32.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2010-08-03 05:17:32.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2010-08-03 05:17:32.000 Reset CMF convenience cache data hash. ---------------------- 2010-08-03 05:17:32.000 Loading CMF from the source XML file. ---------------------- 2010-08-03 05:17:32.000 CMF Version 2.1 detected. ---------------------- 2010-08-03 05:17:32.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2010-08-03 05:17:32.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2010-08-03 05:17:32.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-08-03 05:17:32.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-08-03 05:17:32.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-08-03 05:17:32.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-08-03 05:17:32.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-08-03 05:17:32.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-08-06 01:33:29.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-08-06 00:57:56.32 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-08-05 23:33:29.000 Logging started. ---------------------- 2010-08-05 23:33:29.000 BioCASe protocol used. ---------------------- 2010-08-05 23:33:29.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-08-05 23:33:29.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-08-05 23:33:29.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-08-05 23:33:29.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-08-05 23:33:29.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-08-06 00:57:56.32\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-08-06 00:57:56.32\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-08-06 00:57:56.32\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-08-05 23:33:29.000 Found online debuglevel setting: 1 ---------------------- 2010-08-05 23:33:29.000 Setting debuglevel from 0 to 1 ---------------------- 2010-08-05 23:33:29.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-08-05 23:33:29.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-08-05 23:33:29.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-08-05 23:33:29.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-08-05 23:33:29.000 Pickled file is of latest revision. ---------------------- 2010-08-05 23:33:29.000 Original filter string parsed:
0.1 2010-08-06 00:57:56.32 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-08-05 23:33:29.000 Filter created: None ---------------------- 2010-08-05 23:33:29.000 Compressed filter used: None ---------------------- 2010-08-05 23:33:29.000 Counting total matched records with filter=None ---------------------- 2010-08-05 23:33:29.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-08-05 23:33:29.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-08-09 15:27:12.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-08-09 15:27:11.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString LRwUhMFI HgyJJWsQ DjBXyqLYhvQu tpkadxex ybsRMJspQsKZt pCFAdQDv klBCuLjMNaM vZjRICjCKjWfzhYu CvafOEWo tpkadxex
### ERROR LOG The Logging Results: ---------------------- 2010-08-09 13:27:12.000 Logging started. ---------------------- 2010-08-09 13:27:12.000 BioCASe protocol used. ---------------------- 2010-08-09 13:27:12.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-08-09 13:27:12.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-08-09 13:27:12.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-08-09 13:27:12.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-08-09 13:27:12.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-08-09 15:27:11.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n LRwUhMFI\n HgyJJWsQ\n DjBXyqLYhvQu\n tpkadxex\n ybsRMJspQsKZt\n pCFAdQDv\n klBCuLjMNaM\n vZjRICjCKjWfzhYu\n CvafOEWo\n tpkadxex\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-08-09 15:27:11.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n LRwUhMFI\n HgyJJWsQ\n DjBXyqLYhvQu\n tpkadxex\n ybsRMJspQsKZt\n pCFAdQDv\n klBCuLjMNaM\n vZjRICjCKjWfzhYu\n CvafOEWo\n tpkadxex\n\n\n\n \n
'} ---------------------- 2010-08-09 13:27:12.000 Found online debuglevel setting: 1 ---------------------- 2010-08-09 13:27:12.000 Setting debuglevel from 0 to 1 ---------------------- 2010-08-09 13:27:12.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-08-09 13:27:12.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-08-09 13:27:12.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-08-09 13:27:12.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-08-09 13:27:12.000 Pickled file is of latest revision. ---------------------- 2010-08-09 13:27:12.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-08-09 13:27:12.000 Original filter string parsed:
2.4.2 2010-08-09 15:27:11.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString LRwUhMFI HgyJJWsQ DjBXyqLYhvQu tpkadxex ybsRMJspQsKZt pCFAdQDv klBCuLjMNaM vZjRICjCKjWfzhYu CvafOEWo tpkadxex
---------------------- 2010-08-09 13:27:12.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE LRwUhMFI ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = HgyJJWsQ ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE DjBXyqLYhvQu ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE tpkadxex ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE ybsRMJspQsKZt ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE pCFAdQDv ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE klBCuLjMNaM ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = vZjRICjCKjWfzhYu ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = CvafOEWo ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE tpkadxex )) ---------------------- 2010-08-09 13:27:12.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE LRwUhMFI ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = HgyJJWsQ ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE DjBXyqLYhvQu ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE tpkadxex ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE ybsRMJspQsKZt ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE pCFAdQDv ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE klBCuLjMNaM ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = vZjRICjCKjWfzhYu ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = CvafOEWo ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE tpkadxex )) ---------------------- 2010-08-09 13:27:12.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE LRwUhMFI ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = HgyJJWsQ ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE DjBXyqLYhvQu ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE tpkadxex ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE ybsRMJspQsKZt ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE pCFAdQDv ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE klBCuLjMNaM ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = vZjRICjCKjWfzhYu ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = CvafOEWo ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE tpkadxex )) ---------------------- 2010-08-09 13:27:12.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE LRwUhMFI ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = HgyJJWsQ ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE DjBXyqLYhvQu ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE tpkadxex ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE ybsRMJspQsKZt ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE pCFAdQDv ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE klBCuLjMNaM ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = vZjRICjCKjWfzhYu ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = CvafOEWo ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE tpkadxex )) ---------------------- 2010-08-09 13:27:12.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-08-09 13:27:12.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'LRwUhMFI' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'HgyJJWsQ' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'DjBXyqLYhvQu' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'tpkadxex' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'ybsRMJspQsKZt' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'pCFAdQDv' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'klBCuLjMNaM' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'vZjRICjCKjWfzhYu' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'CvafOEWo' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'tpkadxex' ))' ---------------------- 2010-08-09 13:27:12.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "HgyJJWsQ" ---------------------- 2010-08-09 13:27:12.000 Setting debuglevel from 1 to 3 **************************************** STERNADEMO **************************************** ### ERROR TIME 2010-08-12 11:20:31.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to SternaDemo
2.4.2 2010-08-12 11:20:30.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString *
### ERROR LOG The Logging Results: ---------------------- 2010-08-12 09:20:31.000 Logging started. ---------------------- 2010-08-12 09:20:31.000 BioCASe protocol used. ---------------------- 2010-08-12 09:20:31.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['SternaDemo']} ---------------------- 2010-08-12 09:20:31.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/SternaDemo/provider_setup_file.xml ---------------------- 2010-08-12 09:20:31.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-08-12 09:20:31.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-08-12 09:20:31.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-08-12 11:20:30.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n*\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-08-12 11:20:30.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n*\n\n\n \n
'} ---------------------- 2010-08-12 09:20:31.000 Found online debuglevel setting: 1 ---------------------- 2010-08-12 09:20:31.000 Setting debuglevel from 0 to 1 ---------------------- 2010-08-12 09:20:31.000 No DB connection could be established. Please verify DB state and connection parameters in your provider_setup_file.xml Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 52, in getOperationsObjectForDBMod module = __import__(modulename, globals(), locals(), 'DBmodule') ImportError: No module named dbmod_ ---------------------- 2010-08-12 09:20:31.000 PRG_WRONG_DBMS: The Providers DBMS is not yet supported or it's database drivers are missing. ---------------------- 2010-08-12 09:20:31.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 75, in doRequest operationObj = getOperationsObjectForDBMod(self.psfObj, self.logObj, self.responseObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 56, in getOperationsObjectForDBMod raise ConnectionError(dbms=psfObj.dbms, log=logObj) ConnectionError: ---------------------- 2010-08-12 09:20:31.000 Setting debuglevel from 1 to 3 **************************************** STERNADEMO **************************************** ### ERROR TIME 2010-08-12 11:46:43.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to SternaDemo
2.4.2 2010-08-12 11:46:43.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString *
### ERROR LOG The Logging Results: ---------------------- 2010-08-12 09:46:43.000 Logging started. ---------------------- 2010-08-12 09:46:43.000 BioCASe protocol used. ---------------------- 2010-08-12 09:46:43.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['SternaDemo']} ---------------------- 2010-08-12 09:46:43.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/SternaDemo/provider_setup_file.xml ---------------------- 2010-08-12 09:46:43.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-08-12 09:46:43.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-08-12 09:46:43.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-08-12 11:46:43.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n*\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-08-12 11:46:43.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n*\n\n\n \n
'} ---------------------- 2010-08-12 09:46:43.000 Found online debuglevel setting: 1 ---------------------- 2010-08-12 09:46:43.000 Setting debuglevel from 0 to 1 ---------------------- 2010-08-12 09:46:43.000 No DB connection could be established. Please verify DB state and connection parameters in your provider_setup_file.xml Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 52, in getOperationsObjectForDBMod module = __import__(modulename, globals(), locals(), 'DBmodule') ImportError: No module named dbmod_ ---------------------- 2010-08-12 09:46:43.000 PRG_WRONG_DBMS: The Providers DBMS is not yet supported or it's database drivers are missing. ---------------------- 2010-08-12 09:46:43.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 75, in doRequest operationObj = getOperationsObjectForDBMod(self.psfObj, self.logObj, self.responseObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 56, in getOperationsObjectForDBMod raise ConnectionError(dbms=psfObj.dbms, log=logObj) ConnectionError: ---------------------- 2010-08-12 09:46:43.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-08-13 01:36:21.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-08-13 01:01:10.64 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-08-12 23:36:21.000 Logging started. ---------------------- 2010-08-12 23:36:21.000 BioCASe protocol used. ---------------------- 2010-08-12 23:36:21.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-08-12 23:36:21.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-08-12 23:36:21.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-08-12 23:36:21.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-08-12 23:36:21.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-08-13 01:01:10.64\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-08-13 01:01:10.64\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-08-13 01:01:10.64\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-08-12 23:36:21.000 Found online debuglevel setting: 1 ---------------------- 2010-08-12 23:36:21.000 Setting debuglevel from 0 to 1 ---------------------- 2010-08-12 23:36:21.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-08-12 23:36:21.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-08-12 23:36:21.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-08-12 23:36:21.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-08-12 23:36:21.000 Pickled file is of latest revision. ---------------------- 2010-08-12 23:36:21.000 Original filter string parsed:
0.1 2010-08-13 01:01:10.64 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-08-12 23:36:21.000 Filter created: None ---------------------- 2010-08-12 23:36:21.000 Compressed filter used: None ---------------------- 2010-08-12 23:36:21.000 Counting total matched records with filter=None ---------------------- 2010-08-12 23:36:21.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-08-12 23:36:21.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-08-16 17:44:14.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-08-16 17:44:14.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString fCOpnxPgZKkFPRhQ RAMKWjxiMRzu JqhRguOMHrkQ dtdszus UnzANWkuVkJmTHa xtPgUoCW MSYIIYuTAjvneevAS XabeAIRpUzgJkM AwDFSAPErBMJviqzY dtdszus
### ERROR LOG The Logging Results: ---------------------- 2010-08-16 15:44:14.000 Logging started. ---------------------- 2010-08-16 15:44:14.000 BioCASe protocol used. ---------------------- 2010-08-16 15:44:14.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-08-16 15:44:14.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-08-16 15:44:14.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-08-16 15:44:14.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-08-16 15:44:14.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-08-16 17:44:14.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n fCOpnxPgZKkFPRhQ\n RAMKWjxiMRzu\n JqhRguOMHrkQ\n dtdszus\n UnzANWkuVkJmTHa\n xtPgUoCW\n MSYIIYuTAjvneevAS\n XabeAIRpUzgJkM\n AwDFSAPErBMJviqzY\n dtdszus\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-08-16 17:44:14.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n fCOpnxPgZKkFPRhQ\n RAMKWjxiMRzu\n JqhRguOMHrkQ\n dtdszus\n UnzANWkuVkJmTHa\n xtPgUoCW\n MSYIIYuTAjvneevAS\n XabeAIRpUzgJkM\n AwDFSAPErBMJviqzY\n dtdszus\n\n\n\n \n
'} ---------------------- 2010-08-16 15:44:14.000 Found online debuglevel setting: 1 ---------------------- 2010-08-16 15:44:14.000 Setting debuglevel from 0 to 1 ---------------------- 2010-08-16 15:44:14.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-08-16 15:44:15.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-08-16 15:44:15.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-08-16 15:44:15.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-08-16 15:44:15.000 Pickled file is of latest revision. ---------------------- 2010-08-16 15:44:15.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-08-16 15:44:15.000 Original filter string parsed:
2.4.2 2010-08-16 17:44:14.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString fCOpnxPgZKkFPRhQ RAMKWjxiMRzu JqhRguOMHrkQ dtdszus UnzANWkuVkJmTHa xtPgUoCW MSYIIYuTAjvneevAS XabeAIRpUzgJkM AwDFSAPErBMJviqzY dtdszus
---------------------- 2010-08-16 15:44:15.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE fCOpnxPgZKkFPRhQ ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = RAMKWjxiMRzu ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE JqhRguOMHrkQ ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE dtdszus ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE UnzANWkuVkJmTHa ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE xtPgUoCW ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE MSYIIYuTAjvneevAS ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = XabeAIRpUzgJkM ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = AwDFSAPErBMJviqzY ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE dtdszus )) ---------------------- 2010-08-16 15:44:15.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE fCOpnxPgZKkFPRhQ ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = RAMKWjxiMRzu ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE JqhRguOMHrkQ ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE dtdszus ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE UnzANWkuVkJmTHa ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE xtPgUoCW ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE MSYIIYuTAjvneevAS ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = XabeAIRpUzgJkM ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = AwDFSAPErBMJviqzY ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE dtdszus )) ---------------------- 2010-08-16 15:44:15.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE fCOpnxPgZKkFPRhQ ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = RAMKWjxiMRzu ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE JqhRguOMHrkQ ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE dtdszus ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE UnzANWkuVkJmTHa ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE xtPgUoCW ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE MSYIIYuTAjvneevAS ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = XabeAIRpUzgJkM ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = AwDFSAPErBMJviqzY ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE dtdszus )) ---------------------- 2010-08-16 15:44:15.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE fCOpnxPgZKkFPRhQ ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = RAMKWjxiMRzu ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE JqhRguOMHrkQ ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE dtdszus ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE UnzANWkuVkJmTHa ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE xtPgUoCW ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE MSYIIYuTAjvneevAS ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = XabeAIRpUzgJkM ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = AwDFSAPErBMJviqzY ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE dtdszus )) ---------------------- 2010-08-16 15:44:15.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-08-16 15:44:15.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'fCOpnxPgZKkFPRhQ' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'RAMKWjxiMRzu' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'JqhRguOMHrkQ' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'dtdszus' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'UnzANWkuVkJmTHa' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'xtPgUoCW' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'MSYIIYuTAjvneevAS' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'XabeAIRpUzgJkM' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'AwDFSAPErBMJviqzY' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'dtdszus' ))' ---------------------- 2010-08-16 15:44:15.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "RAMKWjxiMRzu" ---------------------- 2010-08-16 15:44:15.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-08-16 22:13:04.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-08-16 22:13:04.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString ohSRNgEtxr bxxcmnqm@phgbkwwx.com WEWvpzkJoWEW Yraemcrp tksixQUfyzKiNr ZEcAbVIE 7yQMfn Gozzsp qfqdjhx ewewlhvu utrta mcauceui yjfpc ixbo zvwdtql igjpdhimwt. bxxcmnqm@phgbkwwx.com bxxcmnqm@phgbkwwx.com Yraemcrp
### ERROR LOG The Logging Results: ---------------------- 2010-08-16 20:13:04.000 Logging started. ---------------------- 2010-08-16 20:13:04.000 BioCASe protocol used. ---------------------- 2010-08-16 20:13:04.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-08-16 20:13:04.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-08-16 20:13:04.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-08-16 20:13:04.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-08-16 20:13:04.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-08-16 22:13:04.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n ohSRNgEtxr\n bxxcmnqm@phgbkwwx.com\n WEWvpzkJoWEW\n Yraemcrp\n tksixQUfyzKiNr\n ZEcAbVIE\n 7yQMfn Gozzsp qfqdjhx ewewlhvu utrta mcauceui yjfpc ixbo zvwdtql igjpdhimwt.\n bxxcmnqm@phgbkwwx.com\n bxxcmnqm@phgbkwwx.com\n Yraemcrp\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-08-16 22:13:04.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n ohSRNgEtxr\n bxxcmnqm@phgbkwwx.com\n WEWvpzkJoWEW\n Yraemcrp\n tksixQUfyzKiNr\n ZEcAbVIE\n 7yQMfn Gozzsp qfqdjhx ewewlhvu utrta mcauceui yjfpc ixbo zvwdtql igjpdhimwt.\n bxxcmnqm@phgbkwwx.com\n bxxcmnqm@phgbkwwx.com\n Yraemcrp\n\n\n\n \n
'} ---------------------- 2010-08-16 20:13:04.000 Found online debuglevel setting: 1 ---------------------- 2010-08-16 20:13:04.000 Setting debuglevel from 0 to 1 ---------------------- 2010-08-16 20:13:04.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-08-16 20:13:05.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-08-16 20:13:05.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-08-16 20:13:05.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-08-16 20:13:05.000 Pickled file is of latest revision. ---------------------- 2010-08-16 20:13:05.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-08-16 20:13:05.000 Original filter string parsed:
2.4.2 2010-08-16 22:13:04.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString ohSRNgEtxr bxxcmnqm@phgbkwwx.com WEWvpzkJoWEW Yraemcrp tksixQUfyzKiNr ZEcAbVIE 7yQMfn Gozzsp qfqdjhx ewewlhvu utrta mcauceui yjfpc ixbo zvwdtql igjpdhimwt. bxxcmnqm@phgbkwwx.com bxxcmnqm@phgbkwwx.com Yraemcrp
---------------------- 2010-08-16 20:13:05.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE ohSRNgEtxr ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = bxxcmnqm@phgbkwwx.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE WEWvpzkJoWEW ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Yraemcrp ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE tksixQUfyzKiNr ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE ZEcAbVIE ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 7yQMfn Gozzsp qfqdjhx ewewlhvu utrta mcauceui yjfpc ixbo zvwdtql igjpdhimwt. ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = bxxcmnqm@phgbkwwx.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = bxxcmnqm@phgbkwwx.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Yraemcrp )) ---------------------- 2010-08-16 20:13:05.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE ohSRNgEtxr ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = bxxcmnqm@phgbkwwx.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE WEWvpzkJoWEW ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Yraemcrp ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE tksixQUfyzKiNr ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE ZEcAbVIE ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 7yQMfn Gozzsp qfqdjhx ewewlhvu utrta mcauceui yjfpc ixbo zvwdtql igjpdhimwt. ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = bxxcmnqm@phgbkwwx.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = bxxcmnqm@phgbkwwx.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Yraemcrp )) ---------------------- 2010-08-16 20:13:05.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE ohSRNgEtxr ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = bxxcmnqm@phgbkwwx.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE WEWvpzkJoWEW ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Yraemcrp ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE tksixQUfyzKiNr ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE ZEcAbVIE ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 7yQMfn Gozzsp qfqdjhx ewewlhvu utrta mcauceui yjfpc ixbo zvwdtql igjpdhimwt. ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = bxxcmnqm@phgbkwwx.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = bxxcmnqm@phgbkwwx.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Yraemcrp )) ---------------------- 2010-08-16 20:13:05.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE ohSRNgEtxr ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = bxxcmnqm@phgbkwwx.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE WEWvpzkJoWEW ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Yraemcrp ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE tksixQUfyzKiNr ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE ZEcAbVIE ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 7yQMfn Gozzsp qfqdjhx ewewlhvu utrta mcauceui yjfpc ixbo zvwdtql igjpdhimwt. ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = bxxcmnqm@phgbkwwx.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = bxxcmnqm@phgbkwwx.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Yraemcrp )) ---------------------- 2010-08-16 20:13:05.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-08-16 20:13:05.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'ohSRNgEtxr' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'bxxcmnqm@phgbkwwx.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'WEWvpzkJoWEW' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Yraemcrp' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'tksixQUfyzKiNr' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'ZEcAbVIE' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE '7yQMfn Gozzsp qfqdjhx ewewlhvu utrta mcauceui yjfpc ixbo zvwdtql igjpdhimwt.' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'bxxcmnqm@phgbkwwx.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'bxxcmnqm@phgbkwwx.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Yraemcrp' ))' ---------------------- 2010-08-16 20:13:05.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "bxxcmnqm@phgbkwwx.com" ---------------------- 2010-08-16 20:13:05.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-08-16 22:13:10.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 <- to RMCA_Amphibians
2.4.2 2010-08-16 22:13:09.000 search
http://www.tdwg.org/schemas/abcd/2.06 http://www.tdwg.org/schemas/abcd/2.06 ohSRNgEtxr bxxcmnqm@phgbkwwx.com WEWvpzkJoWEW Yraemcrp tksixQUfyzKiNr ZEcAbVIE 7yQMfn Gozzsp qfqdjhx ewewlhvu utrta mcauceui yjfpc ixbo zvwdtql igjpdhimwt. bxxcmnqm@phgbkwwx.com bxxcmnqm@phgbkwwx.com Yraemcrp None False
### ERROR LOG The Logging Results: ---------------------- 2010-08-16 20:13:10.000 Logging started. ---------------------- 2010-08-16 20:13:10.000 BioCASe protocol used. ---------------------- 2010-08-16 20:13:10.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-08-16 20:13:10.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-08-16 20:13:10.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-08-16 20:13:10.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-08-16 20:13:10.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 2.4.2\n 2010-08-16 22:13:09.000\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n http://www.tdwg.org/schemas/abcd/2.06\n \n \n\n \n \n \n \n \n \n \n \n ohSRNgEtxr\n bxxcmnqm@phgbkwwx.com\n \n WEWvpzkJoWEW\n \n Yraemcrp\n \n tksixQUfyzKiNr\n \n ZEcAbVIE\n \n 7yQMfn Gozzsp qfqdjhx ewewlhvu utrta mcauceui yjfpc ixbo zvwdtql igjpdhimwt.\n \n bxxcmnqm@phgbkwwx.com\n \n bxxcmnqm@phgbkwwx.com\n \n Yraemcrp\n None\n\n \n False\n \n
\n ', 'request_string': '\n \n \n
\n 2.4.2\n 2010-08-16 22:13:09.000\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n http://www.tdwg.org/schemas/abcd/2.06\n \n \n\n \n \n \n \n \n \n \n \n ohSRNgEtxr\n bxxcmnqm@phgbkwwx.com\n \n WEWvpzkJoWEW\n \n Yraemcrp\n \n tksixQUfyzKiNr\n \n ZEcAbVIE\n \n 7yQMfn Gozzsp qfqdjhx ewewlhvu utrta mcauceui yjfpc ixbo zvwdtql igjpdhimwt.\n \n bxxcmnqm@phgbkwwx.com\n \n bxxcmnqm@phgbkwwx.com\n \n Yraemcrp\n None\n\n \n False\n \n
\n '} ---------------------- 2010-08-16 20:13:10.000 Found online debuglevel setting: 1 ---------------------- 2010-08-16 20:13:10.000 Setting debuglevel from 0 to 1 ---------------------- 2010-08-16 20:13:10.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-08-16 20:13:10.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-08-16 20:13:10.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-08-16 20:13:10.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-08-16 20:13:11.000 Pickled file is of latest revision. ---------------------- 2010-08-16 20:13:11.000 Original filter string parsed:
2.4.2 2010-08-16 22:13:09.000 search
http://www.tdwg.org/schemas/abcd/2.06 http://www.tdwg.org/schemas/abcd/2.06 ohSRNgEtxr bxxcmnqm@phgbkwwx.com WEWvpzkJoWEW Yraemcrp tksixQUfyzKiNr ZEcAbVIE 7yQMfn Gozzsp qfqdjhx ewewlhvu utrta mcauceui yjfpc ixbo zvwdtql igjpdhimwt. bxxcmnqm@phgbkwwx.com bxxcmnqm@phgbkwwx.com Yraemcrp None False
---------------------- 2010-08-16 20:13:11.000 Filter created: (((((((((("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE ohSRNgEtxr ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = bxxcmnqm@phgbkwwx.com )) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE WEWvpzkJoWEW )) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Yraemcrp )) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE tksixQUfyzKiNr )) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE ZEcAbVIE )) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 7yQMfn Gozzsp qfqdjhx ewewlhvu utrta mcauceui yjfpc ixbo zvwdtql igjpdhimwt. )) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = bxxcmnqm@phgbkwwx.com )) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = bxxcmnqm@phgbkwwx.com )) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Yraemcrp ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" = None )) ---------------------- 2010-08-16 20:13:11.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE ohSRNgEtxr ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = bxxcmnqm@phgbkwwx.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE WEWvpzkJoWEW ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Yraemcrp ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE tksixQUfyzKiNr ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE ZEcAbVIE ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 7yQMfn Gozzsp qfqdjhx ewewlhvu utrta mcauceui yjfpc ixbo zvwdtql igjpdhimwt. ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = bxxcmnqm@phgbkwwx.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = bxxcmnqm@phgbkwwx.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Yraemcrp ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" = None )) ---------------------- 2010-08-16 20:13:11.000 Record Identifier used: v_abcd2v06herpnet_trigger.pk(text) ---------------------- 2010-08-16 20:13:11.000 Use SQL LIMIT to limit the first result set of IDs only to the maximum of 1000 records. ---------------------- 2010-08-16 20:13:11.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06herpnet_trigger"."pk" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'ohSRNgEtxr' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'bxxcmnqm@phgbkwwx.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'WEWvpzkJoWEW' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Yraemcrp' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'tksixQUfyzKiNr' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'ZEcAbVIE' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE '7yQMfn Gozzsp qfqdjhx ewewlhvu utrta mcauceui yjfpc ixbo zvwdtql igjpdhimwt.' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'bxxcmnqm@phgbkwwx.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'bxxcmnqm@phgbkwwx.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Yraemcrp' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" = 'None' )) ORDER BY "v_abcd2v06herpnet_trigger"."pk" LIMIT 1001' ---------------------- 2010-08-16 20:13:11.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 110, in doRequest (self.resultDOM, self.resultStatus) = operationObj.search(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 205, in search (recordset, recStatus) = self._getSearchResultList() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 324, in _getSearchResultList AllIDs = [ item[0] for item in self.execSelect([recID], self.requestObj.filter, orderByList=[recID], limit=start+limit)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 73, in execSelect return self.execSQL(sql, paras) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "bxxcmnqm@phgbkwwx.com" ---------------------- 2010-08-16 20:13:11.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2010-08-17 16:48:39.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2010-08-17 14:48:39.000 Logging started. ---------------------- 2010-08-17 14:48:39.000 BioCASe protocol used. ---------------------- 2010-08-17 14:48:39.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2010-08-17 14:48:39.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2010-08-17 14:48:39.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-08-17 14:48:40.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2010-08-17 14:48:40.000 Unknown request type! Default to capabilities. ---------------------- 2010-08-17 14:48:40.000 Destination hostname could not be determined ---------------------- 2010-08-17 14:48:40.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2010-08-17 14:48:40.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-08-17 14:48:40.000 Pickled file is of latest revision. ---------------------- 2010-08-17 14:48:40.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2010-08-17 14:48:40.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2010-08-17 14:48:40.000 Reset CMF convenience cache data hash. ---------------------- 2010-08-17 14:48:40.000 Loading CMF from the source XML file. ---------------------- 2010-08-17 14:48:40.000 CMF Version 2.1 detected. ---------------------- 2010-08-17 14:48:40.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2010-08-17 14:48:40.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2010-08-17 14:48:40.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-08-17 14:48:40.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-08-17 14:48:40.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2010-08-17 16:48:54.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2010-08-17 14:48:54.000 Logging started. ---------------------- 2010-08-17 14:48:54.000 BioCASe protocol used. ---------------------- 2010-08-17 14:48:54.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2010-08-17 14:48:54.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2010-08-17 14:48:54.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-08-17 14:48:54.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2010-08-17 14:48:54.000 Unknown request type! Default to capabilities. ---------------------- 2010-08-17 14:48:54.000 Destination hostname could not be determined ---------------------- 2010-08-17 14:48:54.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2010-08-17 14:48:54.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-08-17 14:48:54.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-08-17 14:48:54.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2010-08-17 14:48:54.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-08-17 14:48:54.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-08-17 14:48:54.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-08-17 16:49:04.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2010-08-17 14:49:04.000 Logging started. ---------------------- 2010-08-17 14:49:04.000 BioCASe protocol used. ---------------------- 2010-08-17 14:49:04.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-08-17 14:49:04.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-08-17 14:49:04.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-08-17 14:49:04.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2010-08-17 14:49:04.000 Unknown request type! Default to capabilities. ---------------------- 2010-08-17 14:49:04.000 Destination hostname could not be determined ---------------------- 2010-08-17 14:49:04.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2010-08-17 14:49:04.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2010-08-17 14:49:04.000 Reset CMF convenience cache data hash. ---------------------- 2010-08-17 14:49:04.000 Loading CMF from the source XML file. ---------------------- 2010-08-17 14:49:04.000 CMF Version 2.1 detected. ---------------------- 2010-08-17 14:49:05.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2010-08-17 14:49:05.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2010-08-17 14:49:05.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-08-17 14:49:05.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-08-17 14:49:05.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-08-17 14:49:05.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-08-17 14:49:05.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-08-17 14:49:05.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-08-19 01:35:18.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2010-08-18 23:35:18.000 Logging started. ---------------------- 2010-08-18 23:35:18.000 BioCASe protocol used. ---------------------- 2010-08-18 23:35:18.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-08-18 23:35:18.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-08-18 23:35:18.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-08-18 23:35:18.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2010-08-18 23:35:18.000 Unknown request type! Default to capabilities. ---------------------- 2010-08-18 23:35:18.000 Destination hostname could not be determined ---------------------- 2010-08-18 23:35:18.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2010-08-18 23:35:18.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2010-08-18 23:35:18.000 Reset CMF convenience cache data hash. ---------------------- 2010-08-18 23:35:18.000 Loading CMF from the source XML file. ---------------------- 2010-08-18 23:35:18.000 CMF Version 2.1 detected. ---------------------- 2010-08-18 23:35:18.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2010-08-18 23:35:18.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2010-08-18 23:35:18.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-08-18 23:35:18.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-08-18 23:35:18.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-08-18 23:35:18.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-08-18 23:35:18.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-08-18 23:35:18.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2010-08-19 04:06:04.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2010-08-19 02:06:04.000 Logging started. ---------------------- 2010-08-19 02:06:04.000 BioCASe protocol used. ---------------------- 2010-08-19 02:06:04.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2010-08-19 02:06:04.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2010-08-19 02:06:04.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-08-19 02:06:04.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2010-08-19 02:06:04.000 Unknown request type! Default to capabilities. ---------------------- 2010-08-19 02:06:04.000 Destination hostname could not be determined ---------------------- 2010-08-19 02:06:04.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2010-08-19 02:06:04.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-08-19 02:06:04.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-08-19 02:06:04.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2010-08-19 02:06:04.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-08-19 02:06:04.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-08-19 02:06:04.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-08-19 16:39:20.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2010-08-19 14:39:20.000 Logging started. ---------------------- 2010-08-19 14:39:20.000 BioCASe protocol used. ---------------------- 2010-08-19 14:39:20.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-08-19 14:39:20.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-08-19 14:39:20.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-08-19 14:39:20.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2010-08-19 14:39:20.000 Unknown request type! Default to capabilities. ---------------------- 2010-08-19 14:39:20.000 Destination hostname could not be determined ---------------------- 2010-08-19 14:39:20.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2010-08-19 14:39:20.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2010-08-19 14:39:20.000 Reset CMF convenience cache data hash. ---------------------- 2010-08-19 14:39:20.000 Loading CMF from the source XML file. ---------------------- 2010-08-19 14:39:20.000 CMF Version 2.1 detected. ---------------------- 2010-08-19 14:39:20.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2010-08-19 14:39:20.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2010-08-19 14:39:20.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-08-19 14:39:20.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-08-19 14:39:20.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-08-19 14:39:20.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-08-19 14:39:20.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-08-19 14:39:20.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-08-20 01:32:47.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-08-20 00:57:58.83 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-08-19 23:32:47.000 Logging started. ---------------------- 2010-08-19 23:32:47.000 BioCASe protocol used. ---------------------- 2010-08-19 23:32:47.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-08-19 23:32:47.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-08-19 23:32:47.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-08-19 23:32:47.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-08-19 23:32:47.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-08-20 00:57:58.83\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-08-20 00:57:58.83\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-08-20 00:57:58.83\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-08-19 23:32:47.000 Found online debuglevel setting: 1 ---------------------- 2010-08-19 23:32:47.000 Setting debuglevel from 0 to 1 ---------------------- 2010-08-19 23:32:47.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-08-19 23:32:47.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-08-19 23:32:47.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-08-19 23:32:47.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-08-19 23:32:47.000 Pickled file is of latest revision. ---------------------- 2010-08-19 23:32:47.000 Original filter string parsed:
0.1 2010-08-20 00:57:58.83 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-08-19 23:32:47.000 Filter created: None ---------------------- 2010-08-19 23:32:47.000 Compressed filter used: None ---------------------- 2010-08-19 23:32:47.000 Counting total matched records with filter=None ---------------------- 2010-08-19 23:32:47.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-08-19 23:32:47.000 Setting debuglevel from 1 to 3 **************************************** STERNADEMO **************************************** ### ERROR TIME 2010-08-20 11:58:23.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to SternaDemo
2.4.2 2010-08-20 11:58:22.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString *
### ERROR LOG The Logging Results: ---------------------- 2010-08-20 09:58:23.000 Logging started. ---------------------- 2010-08-20 09:58:23.000 BioCASe protocol used. ---------------------- 2010-08-20 09:58:23.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['SternaDemo']} ---------------------- 2010-08-20 09:58:23.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/SternaDemo/provider_setup_file.xml ---------------------- 2010-08-20 09:58:23.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-08-20 09:58:23.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-08-20 09:58:23.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-08-20 11:58:22.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n*\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-08-20 11:58:22.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n*\n\n\n \n
'} ---------------------- 2010-08-20 09:58:23.000 Found online debuglevel setting: 1 ---------------------- 2010-08-20 09:58:23.000 Setting debuglevel from 0 to 1 ---------------------- 2010-08-20 09:58:23.000 No DB connection could be established. Please verify DB state and connection parameters in your provider_setup_file.xml Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 52, in getOperationsObjectForDBMod module = __import__(modulename, globals(), locals(), 'DBmodule') ImportError: No module named dbmod_ ---------------------- 2010-08-20 09:58:23.000 PRG_WRONG_DBMS: The Providers DBMS is not yet supported or it's database drivers are missing. ---------------------- 2010-08-20 09:58:23.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 75, in doRequest operationObj = getOperationsObjectForDBMod(self.psfObj, self.logObj, self.responseObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 56, in getOperationsObjectForDBMod raise ConnectionError(dbms=psfObj.dbms, log=logObj) ConnectionError: ---------------------- 2010-08-20 09:58:23.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-08-21 00:53:29.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians20070608
2.4.2 2010-08-21 00:53:29.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA hczwrf@dajpyb.com USA oysxhvug djjexa 440649 AnWo0 hczwrf@dajpyb.com hczwrf@dajpyb.com oysxhvug
### ERROR LOG The Logging Results: ---------------------- 2010-08-20 22:53:29.000 Logging started. ---------------------- 2010-08-20 22:53:29.000 BioCASe protocol used. ---------------------- 2010-08-20 22:53:29.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-08-20 22:53:29.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-08-20 22:53:29.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-08-20 22:53:29.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-08-20 22:53:29.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-08-21 00:53:29.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n hczwrf@dajpyb.com\n USA\n oysxhvug\n djjexa\n 440649\n AnWo0\n hczwrf@dajpyb.com\n hczwrf@dajpyb.com\n oysxhvug\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-08-21 00:53:29.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n hczwrf@dajpyb.com\n USA\n oysxhvug\n djjexa\n 440649\n AnWo0\n hczwrf@dajpyb.com\n hczwrf@dajpyb.com\n oysxhvug\n\n\n\n \n
'} ---------------------- 2010-08-20 22:53:29.000 Found online debuglevel setting: 1 ---------------------- 2010-08-20 22:53:29.000 Setting debuglevel from 0 to 1 ---------------------- 2010-08-20 22:53:29.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-08-20 22:53:30.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-08-20 22:53:30.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-08-20 22:53:30.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-08-20 22:53:30.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 231, in getCMFobject CMFObject.loadCMFdata(self.psfObj.getCMFfilename(namespace), psfObj=self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-08-20 22:53:30.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 118, in scan self.CMFObject = self.getCMFobject(self.requestObj.reqSchema, altRootTableKey=self.altRootTableAlias) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 237, in getCMFobject raise CMFError(log=self.logObj, cmf=namespace) CMFError: ---------------------- 2010-08-20 22:53:30.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-08-21 07:05:57.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-08-21 07:05:57.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString bPSrdMHRMIkvFEbw hiZkbledXs QwuBJhTJmaRNviM revbtqxpuop vzjhgjXmFGEeRyoSxlC wyTFtTSfDZAoOe FAKocITSHBBqLkGX aZcONpTiZgKxYKk lYgwrqpIGhjOSmsCi revbtqxpuop
### ERROR LOG The Logging Results: ---------------------- 2010-08-21 05:05:57.000 Logging started. ---------------------- 2010-08-21 05:05:57.000 BioCASe protocol used. ---------------------- 2010-08-21 05:05:57.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-08-21 05:05:57.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-08-21 05:05:57.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-08-21 05:05:57.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-08-21 05:05:57.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-08-21 07:05:57.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n bPSrdMHRMIkvFEbw\n hiZkbledXs\n QwuBJhTJmaRNviM\n revbtqxpuop\n vzjhgjXmFGEeRyoSxlC\n wyTFtTSfDZAoOe\n FAKocITSHBBqLkGX\n aZcONpTiZgKxYKk\n lYgwrqpIGhjOSmsCi\n revbtqxpuop\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-08-21 07:05:57.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n bPSrdMHRMIkvFEbw\n hiZkbledXs\n QwuBJhTJmaRNviM\n revbtqxpuop\n vzjhgjXmFGEeRyoSxlC\n wyTFtTSfDZAoOe\n FAKocITSHBBqLkGX\n aZcONpTiZgKxYKk\n lYgwrqpIGhjOSmsCi\n revbtqxpuop\n\n\n\n \n
'} ---------------------- 2010-08-21 05:05:57.000 Found online debuglevel setting: 1 ---------------------- 2010-08-21 05:05:57.000 Setting debuglevel from 0 to 1 ---------------------- 2010-08-21 05:05:57.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-08-21 05:05:57.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-08-21 05:05:57.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-08-21 05:05:57.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-08-21 05:05:58.000 Pickled file is of latest revision. ---------------------- 2010-08-21 05:05:58.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-08-21 05:05:58.000 Original filter string parsed:
2.4.2 2010-08-21 07:05:57.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString bPSrdMHRMIkvFEbw hiZkbledXs QwuBJhTJmaRNviM revbtqxpuop vzjhgjXmFGEeRyoSxlC wyTFtTSfDZAoOe FAKocITSHBBqLkGX aZcONpTiZgKxYKk lYgwrqpIGhjOSmsCi revbtqxpuop
---------------------- 2010-08-21 05:05:58.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE bPSrdMHRMIkvFEbw ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = hiZkbledXs ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE QwuBJhTJmaRNviM ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE revbtqxpuop ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE vzjhgjXmFGEeRyoSxlC ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE wyTFtTSfDZAoOe ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE FAKocITSHBBqLkGX ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = aZcONpTiZgKxYKk ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = lYgwrqpIGhjOSmsCi ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE revbtqxpuop )) ---------------------- 2010-08-21 05:05:58.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE bPSrdMHRMIkvFEbw ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = hiZkbledXs ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE QwuBJhTJmaRNviM ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE revbtqxpuop ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE vzjhgjXmFGEeRyoSxlC ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE wyTFtTSfDZAoOe ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE FAKocITSHBBqLkGX ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = aZcONpTiZgKxYKk ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = lYgwrqpIGhjOSmsCi ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE revbtqxpuop )) ---------------------- 2010-08-21 05:05:58.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE bPSrdMHRMIkvFEbw ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = hiZkbledXs ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE QwuBJhTJmaRNviM ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE revbtqxpuop ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE vzjhgjXmFGEeRyoSxlC ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE wyTFtTSfDZAoOe ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE FAKocITSHBBqLkGX ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = aZcONpTiZgKxYKk ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = lYgwrqpIGhjOSmsCi ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE revbtqxpuop )) ---------------------- 2010-08-21 05:05:58.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE bPSrdMHRMIkvFEbw ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = hiZkbledXs ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE QwuBJhTJmaRNviM ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE revbtqxpuop ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE vzjhgjXmFGEeRyoSxlC ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE wyTFtTSfDZAoOe ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE FAKocITSHBBqLkGX ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = aZcONpTiZgKxYKk ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = lYgwrqpIGhjOSmsCi ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE revbtqxpuop )) ---------------------- 2010-08-21 05:05:58.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-08-21 05:05:58.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'bPSrdMHRMIkvFEbw' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'hiZkbledXs' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'QwuBJhTJmaRNviM' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'revbtqxpuop' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'vzjhgjXmFGEeRyoSxlC' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'wyTFtTSfDZAoOe' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'FAKocITSHBBqLkGX' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'aZcONpTiZgKxYKk' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'lYgwrqpIGhjOSmsCi' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'revbtqxpuop' ))' ---------------------- 2010-08-21 05:05:58.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "hiZkbledXs" ---------------------- 2010-08-21 05:05:58.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-08-21 10:22:19.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians20070608
2.4.2 2010-08-21 10:22:19.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString XvHlwuosN NeDnxzAckKPPklyB lBTYrlgMYm ztuvchlywny kMKaghATTQ muXrRtdecehjD bIBsqVBcSUoE SxeGDFho ckTWpnDFoju ztuvchlywny
### ERROR LOG The Logging Results: ---------------------- 2010-08-21 08:22:19.000 Logging started. ---------------------- 2010-08-21 08:22:20.000 BioCASe protocol used. ---------------------- 2010-08-21 08:22:20.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-08-21 08:22:20.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-08-21 08:22:20.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-08-21 08:22:20.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-08-21 08:22:20.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-08-21 10:22:19.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n XvHlwuosN\n NeDnxzAckKPPklyB\n lBTYrlgMYm\n ztuvchlywny\n kMKaghATTQ\n muXrRtdecehjD\n bIBsqVBcSUoE\n SxeGDFho\n ckTWpnDFoju\n ztuvchlywny\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-08-21 10:22:19.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n XvHlwuosN\n NeDnxzAckKPPklyB\n lBTYrlgMYm\n ztuvchlywny\n kMKaghATTQ\n muXrRtdecehjD\n bIBsqVBcSUoE\n SxeGDFho\n ckTWpnDFoju\n ztuvchlywny\n\n\n\n \n
'} ---------------------- 2010-08-21 08:22:20.000 Found online debuglevel setting: 1 ---------------------- 2010-08-21 08:22:20.000 Setting debuglevel from 0 to 1 ---------------------- 2010-08-21 08:22:20.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-08-21 08:22:20.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-08-21 08:22:20.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-08-21 08:22:20.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-08-21 08:22:20.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 231, in getCMFobject CMFObject.loadCMFdata(self.psfObj.getCMFfilename(namespace), psfObj=self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-08-21 08:22:20.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 118, in scan self.CMFObject = self.getCMFobject(self.requestObj.reqSchema, altRootTableKey=self.altRootTableAlias) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 237, in getCMFobject raise CMFError(log=self.logObj, cmf=namespace) CMFError: ---------------------- 2010-08-21 08:22:20.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2010-08-21 23:00:14.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2010-08-21 21:00:14.000 Logging started. ---------------------- 2010-08-21 21:00:14.000 BioCASe protocol used. ---------------------- 2010-08-21 21:00:14.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2010-08-21 21:00:14.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2010-08-21 21:00:14.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-08-21 21:00:14.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2010-08-21 21:00:14.000 Unknown request type! Default to capabilities. ---------------------- 2010-08-21 21:00:14.000 Destination hostname could not be determined ---------------------- 2010-08-21 21:00:14.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2010-08-21 21:00:14.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-08-21 21:00:14.000 Pickled file is of latest revision. ---------------------- 2010-08-21 21:00:14.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2010-08-21 21:00:14.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2010-08-21 21:00:14.000 Reset CMF convenience cache data hash. ---------------------- 2010-08-21 21:00:14.000 Loading CMF from the source XML file. ---------------------- 2010-08-21 21:00:14.000 CMF Version 2.1 detected. ---------------------- 2010-08-21 21:00:15.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2010-08-21 21:00:15.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2010-08-21 21:00:15.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-08-21 21:00:15.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-08-21 21:00:15.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2010-08-23 02:59:21.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2010-08-23 00:59:21.000 Logging started. ---------------------- 2010-08-23 00:59:21.000 BioCASe protocol used. ---------------------- 2010-08-23 00:59:21.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2010-08-23 00:59:21.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2010-08-23 00:59:21.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-08-23 00:59:21.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2010-08-23 00:59:21.000 Unknown request type! Default to capabilities. ---------------------- 2010-08-23 00:59:21.000 Destination hostname could not be determined ---------------------- 2010-08-23 00:59:21.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2010-08-23 00:59:21.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-08-23 00:59:21.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-08-23 00:59:21.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2010-08-23 00:59:21.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-08-23 00:59:21.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-08-23 00:59:21.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-08-24 01:35:49.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2010-08-23 23:35:49.000 Logging started. ---------------------- 2010-08-23 23:35:49.000 BioCASe protocol used. ---------------------- 2010-08-23 23:35:49.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-08-23 23:35:49.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-08-23 23:35:49.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-08-23 23:35:49.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2010-08-23 23:35:49.000 Unknown request type! Default to capabilities. ---------------------- 2010-08-23 23:35:49.000 Destination hostname could not be determined ---------------------- 2010-08-23 23:35:49.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2010-08-23 23:35:49.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2010-08-23 23:35:49.000 Reset CMF convenience cache data hash. ---------------------- 2010-08-23 23:35:49.000 Loading CMF from the source XML file. ---------------------- 2010-08-23 23:35:49.000 CMF Version 2.1 detected. ---------------------- 2010-08-23 23:35:50.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2010-08-23 23:35:50.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2010-08-23 23:35:50.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-08-23 23:35:50.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-08-23 23:35:50.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-08-23 23:35:50.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-08-23 23:35:50.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-08-23 23:35:50.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-08-24 12:52:09.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians20070608
2.4.2 2010-08-24 12:52:08.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA oljigh@icgzbh.com USA ksaxgdbsr bnruf 614555 ukbvy oljigh@icgzbh.com oljigh@icgzbh.com ksaxgdbsr
### ERROR LOG The Logging Results: ---------------------- 2010-08-24 10:52:09.000 Logging started. ---------------------- 2010-08-24 10:52:09.000 BioCASe protocol used. ---------------------- 2010-08-24 10:52:09.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-08-24 10:52:09.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-08-24 10:52:09.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-08-24 10:52:09.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-08-24 10:52:09.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-08-24 12:52:08.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n oljigh@icgzbh.com\n USA\n ksaxgdbsr\n bnruf\n 614555\n ukbvy\n oljigh@icgzbh.com\n oljigh@icgzbh.com\n ksaxgdbsr\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-08-24 12:52:08.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n oljigh@icgzbh.com\n USA\n ksaxgdbsr\n bnruf\n 614555\n ukbvy\n oljigh@icgzbh.com\n oljigh@icgzbh.com\n ksaxgdbsr\n\n\n\n \n
'} ---------------------- 2010-08-24 10:52:09.000 Found online debuglevel setting: 1 ---------------------- 2010-08-24 10:52:09.000 Setting debuglevel from 0 to 1 ---------------------- 2010-08-24 10:52:09.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-08-24 10:52:09.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-08-24 10:52:09.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-08-24 10:52:09.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-08-24 10:52:09.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 231, in getCMFobject CMFObject.loadCMFdata(self.psfObj.getCMFfilename(namespace), psfObj=self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-08-24 10:52:09.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 118, in scan self.CMFObject = self.getCMFobject(self.requestObj.reqSchema, altRootTableKey=self.altRootTableAlias) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 237, in getCMFobject raise CMFError(log=self.logObj, cmf=namespace) CMFError: ---------------------- 2010-08-24 10:52:09.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2010-08-24 15:27:33.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2010-08-24 13:27:33.000 Logging started. ---------------------- 2010-08-24 13:27:33.000 BioCASe protocol used. ---------------------- 2010-08-24 13:27:33.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2010-08-24 13:27:33.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2010-08-24 13:27:33.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-08-24 13:27:33.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2010-08-24 13:27:33.000 Unknown request type! Default to capabilities. ---------------------- 2010-08-24 13:27:33.000 Destination hostname could not be determined ---------------------- 2010-08-24 13:27:33.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2010-08-24 13:27:33.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-08-24 13:27:33.000 Pickled file is of latest revision. ---------------------- 2010-08-24 13:27:33.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2010-08-24 13:27:33.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2010-08-24 13:27:33.000 Reset CMF convenience cache data hash. ---------------------- 2010-08-24 13:27:33.000 Loading CMF from the source XML file. ---------------------- 2010-08-24 13:27:33.000 CMF Version 2.1 detected. ---------------------- 2010-08-24 13:27:34.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2010-08-24 13:27:34.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2010-08-24 13:27:34.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-08-24 13:27:34.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-08-24 13:27:34.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-08-25 00:37:58.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians20070608
2.4.2 2010-08-25 00:37:58.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA ulfepp@pnhrig.com USA wfkjlgwi zmtqoawk 779568 sPMt1U ulfepp@pnhrig.com ulfepp@pnhrig.com wfkjlgwi
### ERROR LOG The Logging Results: ---------------------- 2010-08-24 22:37:58.000 Logging started. ---------------------- 2010-08-24 22:37:59.000 BioCASe protocol used. ---------------------- 2010-08-24 22:37:59.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-08-24 22:37:59.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-08-24 22:37:59.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-08-24 22:37:59.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-08-24 22:37:59.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-08-25 00:37:58.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n ulfepp@pnhrig.com\n USA\n wfkjlgwi\n zmtqoawk\n 779568\n sPMt1U\n ulfepp@pnhrig.com\n ulfepp@pnhrig.com\n wfkjlgwi\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-08-25 00:37:58.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n ulfepp@pnhrig.com\n USA\n wfkjlgwi\n zmtqoawk\n 779568\n sPMt1U\n ulfepp@pnhrig.com\n ulfepp@pnhrig.com\n wfkjlgwi\n\n\n\n \n
'} ---------------------- 2010-08-24 22:37:59.000 Found online debuglevel setting: 1 ---------------------- 2010-08-24 22:37:59.000 Setting debuglevel from 0 to 1 ---------------------- 2010-08-24 22:37:59.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-08-24 22:37:59.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-08-24 22:37:59.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-08-24 22:37:59.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-08-24 22:37:59.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 231, in getCMFobject CMFObject.loadCMFdata(self.psfObj.getCMFfilename(namespace), psfObj=self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-08-24 22:37:59.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 118, in scan self.CMFObject = self.getCMFobject(self.requestObj.reqSchema, altRootTableKey=self.altRootTableAlias) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 237, in getCMFobject raise CMFError(log=self.logObj, cmf=namespace) CMFError: ---------------------- 2010-08-24 22:37:59.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-08-25 00:38:19.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians20070608
2.4.2 2010-08-25 00:38:18.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA seyzyu@ftwavo.com USA gwijvask gjmbwab 78399 FhMhX seyzyu@ftwavo.com seyzyu@ftwavo.com gwijvask
### ERROR LOG The Logging Results: ---------------------- 2010-08-24 22:38:19.000 Logging started. ---------------------- 2010-08-24 22:38:19.000 BioCASe protocol used. ---------------------- 2010-08-24 22:38:19.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-08-24 22:38:19.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-08-24 22:38:19.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-08-24 22:38:19.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-08-24 22:38:19.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-08-25 00:38:18.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n seyzyu@ftwavo.com\n USA\n gwijvask\n gjmbwab\n 78399\n FhMhX\n seyzyu@ftwavo.com\n seyzyu@ftwavo.com\n gwijvask\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-08-25 00:38:18.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n seyzyu@ftwavo.com\n USA\n gwijvask\n gjmbwab\n 78399\n FhMhX\n seyzyu@ftwavo.com\n seyzyu@ftwavo.com\n gwijvask\n\n\n\n \n
'} ---------------------- 2010-08-24 22:38:19.000 Found online debuglevel setting: 1 ---------------------- 2010-08-24 22:38:19.000 Setting debuglevel from 0 to 1 ---------------------- 2010-08-24 22:38:19.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-08-24 22:38:20.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-08-24 22:38:20.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-08-24 22:38:20.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-08-24 22:38:20.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 231, in getCMFobject CMFObject.loadCMFdata(self.psfObj.getCMFfilename(namespace), psfObj=self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-08-24 22:38:20.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 118, in scan self.CMFObject = self.getCMFobject(self.requestObj.reqSchema, altRootTableKey=self.altRootTableAlias) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 237, in getCMFobject raise CMFError(log=self.logObj, cmf=namespace) CMFError: ---------------------- 2010-08-24 22:38:20.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-08-27 01:32:22.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-08-27 00:57:56.64 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-08-26 23:32:22.000 Logging started. ---------------------- 2010-08-26 23:32:22.000 BioCASe protocol used. ---------------------- 2010-08-26 23:32:22.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-08-26 23:32:22.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-08-26 23:32:22.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-08-26 23:32:23.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-08-26 23:32:23.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-08-27 00:57:56.64\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-08-27 00:57:56.64\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-08-27 00:57:56.64\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-08-26 23:32:23.000 Found online debuglevel setting: 1 ---------------------- 2010-08-26 23:32:23.000 Setting debuglevel from 0 to 1 ---------------------- 2010-08-26 23:32:23.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-08-26 23:32:23.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-08-26 23:32:23.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-08-26 23:32:23.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-08-26 23:32:23.000 Pickled file is of latest revision. ---------------------- 2010-08-26 23:32:23.000 Original filter string parsed:
0.1 2010-08-27 00:57:56.64 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-08-26 23:32:23.000 Filter created: None ---------------------- 2010-08-26 23:32:23.000 Compressed filter used: None ---------------------- 2010-08-26 23:32:23.000 Counting total matched records with filter=None ---------------------- 2010-08-26 23:32:23.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-08-26 23:32:23.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2010-08-27 08:10:08.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2010-08-27 06:10:08.000 Logging started. ---------------------- 2010-08-27 06:10:08.000 BioCASe protocol used. ---------------------- 2010-08-27 06:10:08.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2010-08-27 06:10:08.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2010-08-27 06:10:08.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-08-27 06:10:08.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2010-08-27 06:10:08.000 Unknown request type! Default to capabilities. ---------------------- 2010-08-27 06:10:08.000 Destination hostname could not be determined ---------------------- 2010-08-27 06:10:08.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2010-08-27 06:10:08.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-08-27 06:10:09.000 Pickled file is of latest revision. ---------------------- 2010-08-27 06:10:09.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2010-08-27 06:10:09.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2010-08-27 06:10:09.000 Reset CMF convenience cache data hash. ---------------------- 2010-08-27 06:10:09.000 Loading CMF from the source XML file. ---------------------- 2010-08-27 06:10:09.000 CMF Version 2.1 detected. ---------------------- 2010-08-27 06:10:09.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2010-08-27 06:10:09.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2010-08-27 06:10:09.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-08-27 06:10:09.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-08-27 06:10:09.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-08-28 01:48:00.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-08-28 01:48:00.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString DwFaqTemsn IngXJEDtGcwrkF VdrPDKjiI fkfotnc cNXBfsrGBe bNJZiekWi PoqYFqLmWKRc HGCmHnZaADbeZDpsGkZ gUbqVHFxOhLMti fkfotnc
### ERROR LOG The Logging Results: ---------------------- 2010-08-27 23:48:00.000 Logging started. ---------------------- 2010-08-27 23:48:00.000 BioCASe protocol used. ---------------------- 2010-08-27 23:48:00.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-08-27 23:48:00.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-08-27 23:48:00.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-08-27 23:48:00.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-08-27 23:48:00.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-08-28 01:48:00.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n DwFaqTemsn\n IngXJEDtGcwrkF\n VdrPDKjiI\n fkfotnc\n cNXBfsrGBe\n bNJZiekWi\n PoqYFqLmWKRc\n HGCmHnZaADbeZDpsGkZ\n gUbqVHFxOhLMti\n fkfotnc\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-08-28 01:48:00.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n DwFaqTemsn\n IngXJEDtGcwrkF\n VdrPDKjiI\n fkfotnc\n cNXBfsrGBe\n bNJZiekWi\n PoqYFqLmWKRc\n HGCmHnZaADbeZDpsGkZ\n gUbqVHFxOhLMti\n fkfotnc\n\n\n\n \n
'} ---------------------- 2010-08-27 23:48:00.000 Found online debuglevel setting: 1 ---------------------- 2010-08-27 23:48:00.000 Setting debuglevel from 0 to 1 ---------------------- 2010-08-27 23:48:00.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-08-27 23:48:01.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-08-27 23:48:01.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-08-27 23:48:01.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-08-27 23:48:01.000 Pickled file is of latest revision. ---------------------- 2010-08-27 23:48:01.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-08-27 23:48:01.000 Original filter string parsed:
2.4.2 2010-08-28 01:48:00.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString DwFaqTemsn IngXJEDtGcwrkF VdrPDKjiI fkfotnc cNXBfsrGBe bNJZiekWi PoqYFqLmWKRc HGCmHnZaADbeZDpsGkZ gUbqVHFxOhLMti fkfotnc
---------------------- 2010-08-27 23:48:01.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE DwFaqTemsn ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = IngXJEDtGcwrkF ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE VdrPDKjiI ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE fkfotnc ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE cNXBfsrGBe ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE bNJZiekWi ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE PoqYFqLmWKRc ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = HGCmHnZaADbeZDpsGkZ ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = gUbqVHFxOhLMti ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE fkfotnc )) ---------------------- 2010-08-27 23:48:01.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE DwFaqTemsn ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = IngXJEDtGcwrkF ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE VdrPDKjiI ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE fkfotnc ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE cNXBfsrGBe ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE bNJZiekWi ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE PoqYFqLmWKRc ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = HGCmHnZaADbeZDpsGkZ ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = gUbqVHFxOhLMti ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE fkfotnc )) ---------------------- 2010-08-27 23:48:01.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE DwFaqTemsn ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = IngXJEDtGcwrkF ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE VdrPDKjiI ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE fkfotnc ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE cNXBfsrGBe ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE bNJZiekWi ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE PoqYFqLmWKRc ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = HGCmHnZaADbeZDpsGkZ ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = gUbqVHFxOhLMti ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE fkfotnc )) ---------------------- 2010-08-27 23:48:01.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE DwFaqTemsn ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = IngXJEDtGcwrkF ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE VdrPDKjiI ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE fkfotnc ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE cNXBfsrGBe ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE bNJZiekWi ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE PoqYFqLmWKRc ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = HGCmHnZaADbeZDpsGkZ ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = gUbqVHFxOhLMti ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE fkfotnc )) ---------------------- 2010-08-27 23:48:01.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-08-27 23:48:01.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'DwFaqTemsn' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'IngXJEDtGcwrkF' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'VdrPDKjiI' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'fkfotnc' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'cNXBfsrGBe' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'bNJZiekWi' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'PoqYFqLmWKRc' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'HGCmHnZaADbeZDpsGkZ' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'gUbqVHFxOhLMti' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'fkfotnc' ))' ---------------------- 2010-08-27 23:48:01.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "IngXJEDtGcwrkF" ---------------------- 2010-08-27 23:48:01.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-08-31 00:04:59.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-08-31 00:04:58.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString xyurYjTOM sNsZvmuFJJGMzX gLmxiSuKspvRRwaeAo glnnop oijjPIhVeLOjCjh ewfRYboxMfJnaL NPjWuMGbAabwYLQKvP YhdnZNPYpwYqjpiuwrh CdWNYexE glnnop
### ERROR LOG The Logging Results: ---------------------- 2010-08-30 22:04:59.000 Logging started. ---------------------- 2010-08-30 22:04:59.000 BioCASe protocol used. ---------------------- 2010-08-30 22:04:59.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-08-30 22:04:59.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-08-30 22:04:59.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-08-30 22:04:59.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-08-30 22:04:59.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-08-31 00:04:58.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n xyurYjTOM\n sNsZvmuFJJGMzX\n gLmxiSuKspvRRwaeAo\n glnnop\n oijjPIhVeLOjCjh\n ewfRYboxMfJnaL\n NPjWuMGbAabwYLQKvP\n YhdnZNPYpwYqjpiuwrh\n CdWNYexE\n glnnop\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-08-31 00:04:58.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n xyurYjTOM\n sNsZvmuFJJGMzX\n gLmxiSuKspvRRwaeAo\n glnnop\n oijjPIhVeLOjCjh\n ewfRYboxMfJnaL\n NPjWuMGbAabwYLQKvP\n YhdnZNPYpwYqjpiuwrh\n CdWNYexE\n glnnop\n\n\n\n \n
'} ---------------------- 2010-08-30 22:04:59.000 Found online debuglevel setting: 1 ---------------------- 2010-08-30 22:04:59.000 Setting debuglevel from 0 to 1 ---------------------- 2010-08-30 22:04:59.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-08-30 22:04:59.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-08-30 22:04:59.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-08-30 22:04:59.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-08-30 22:05:00.000 Pickled file is of latest revision. ---------------------- 2010-08-30 22:05:00.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-08-30 22:05:00.000 Original filter string parsed:
2.4.2 2010-08-31 00:04:58.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString xyurYjTOM sNsZvmuFJJGMzX gLmxiSuKspvRRwaeAo glnnop oijjPIhVeLOjCjh ewfRYboxMfJnaL NPjWuMGbAabwYLQKvP YhdnZNPYpwYqjpiuwrh CdWNYexE glnnop
---------------------- 2010-08-30 22:05:00.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE xyurYjTOM ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = sNsZvmuFJJGMzX ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE gLmxiSuKspvRRwaeAo ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE glnnop ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE oijjPIhVeLOjCjh ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE ewfRYboxMfJnaL ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE NPjWuMGbAabwYLQKvP ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = YhdnZNPYpwYqjpiuwrh ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = CdWNYexE ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE glnnop )) ---------------------- 2010-08-30 22:05:00.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE xyurYjTOM ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = sNsZvmuFJJGMzX ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE gLmxiSuKspvRRwaeAo ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE glnnop ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE oijjPIhVeLOjCjh ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE ewfRYboxMfJnaL ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE NPjWuMGbAabwYLQKvP ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = YhdnZNPYpwYqjpiuwrh ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = CdWNYexE ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE glnnop )) ---------------------- 2010-08-30 22:05:00.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE xyurYjTOM ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = sNsZvmuFJJGMzX ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE gLmxiSuKspvRRwaeAo ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE glnnop ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE oijjPIhVeLOjCjh ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE ewfRYboxMfJnaL ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE NPjWuMGbAabwYLQKvP ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = YhdnZNPYpwYqjpiuwrh ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = CdWNYexE ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE glnnop )) ---------------------- 2010-08-30 22:05:00.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE xyurYjTOM ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = sNsZvmuFJJGMzX ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE gLmxiSuKspvRRwaeAo ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE glnnop ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE oijjPIhVeLOjCjh ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE ewfRYboxMfJnaL ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE NPjWuMGbAabwYLQKvP ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = YhdnZNPYpwYqjpiuwrh ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = CdWNYexE ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE glnnop )) ---------------------- 2010-08-30 22:05:00.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-08-30 22:05:00.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'xyurYjTOM' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'sNsZvmuFJJGMzX' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'gLmxiSuKspvRRwaeAo' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'glnnop' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'oijjPIhVeLOjCjh' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'ewfRYboxMfJnaL' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'NPjWuMGbAabwYLQKvP' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'YhdnZNPYpwYqjpiuwrh' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'CdWNYexE' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'glnnop' ))' ---------------------- 2010-08-30 22:05:00.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "sNsZvmuFJJGMzX" ---------------------- 2010-08-30 22:05:00.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-08-31 20:41:55.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians20070608
2.4.2 2010-08-31 20:41:55.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA ndybac@xbyyzk.com USA ghhrfuszz dvenzulfz 580990 Ml827r ndybac@xbyyzk.com ndybac@xbyyzk.com ghhrfuszz
### ERROR LOG The Logging Results: ---------------------- 2010-08-31 18:41:55.000 Logging started. ---------------------- 2010-08-31 18:41:55.000 BioCASe protocol used. ---------------------- 2010-08-31 18:41:55.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-08-31 18:41:55.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-08-31 18:41:55.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-08-31 18:41:55.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-08-31 18:41:55.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-08-31 20:41:55.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n ndybac@xbyyzk.com\n USA\n ghhrfuszz\n dvenzulfz\n 580990\n Ml827r\n ndybac@xbyyzk.com\n ndybac@xbyyzk.com\n ghhrfuszz\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-08-31 20:41:55.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n ndybac@xbyyzk.com\n USA\n ghhrfuszz\n dvenzulfz\n 580990\n Ml827r\n ndybac@xbyyzk.com\n ndybac@xbyyzk.com\n ghhrfuszz\n\n\n\n \n
'} ---------------------- 2010-08-31 18:41:55.000 Found online debuglevel setting: 1 ---------------------- 2010-08-31 18:41:55.000 Setting debuglevel from 0 to 1 ---------------------- 2010-08-31 18:41:55.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-08-31 18:41:56.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-08-31 18:41:56.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-08-31 18:41:56.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-08-31 18:41:56.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 231, in getCMFobject CMFObject.loadCMFdata(self.psfObj.getCMFfilename(namespace), psfObj=self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-08-31 18:41:56.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 118, in scan self.CMFObject = self.getCMFobject(self.requestObj.reqSchema, altRootTableKey=self.altRootTableAlias) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 237, in getCMFobject raise CMFError(log=self.logObj, cmf=namespace) CMFError: ---------------------- 2010-08-31 18:41:56.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-09-03 01:32:00.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-09-03 00:57:55.94 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-09-02 23:32:00.000 Logging started. ---------------------- 2010-09-02 23:32:00.000 BioCASe protocol used. ---------------------- 2010-09-02 23:32:00.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-09-02 23:32:00.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-09-02 23:32:00.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-09-02 23:32:00.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-09-02 23:32:00.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-09-03 00:57:55.94\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-09-03 00:57:55.94\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-09-03 00:57:55.94\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-09-02 23:32:00.000 Found online debuglevel setting: 1 ---------------------- 2010-09-02 23:32:00.000 Setting debuglevel from 0 to 1 ---------------------- 2010-09-02 23:32:00.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-09-02 23:32:00.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-09-02 23:32:00.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-09-02 23:32:00.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-09-02 23:32:00.000 Pickled file is of latest revision. ---------------------- 2010-09-02 23:32:00.000 Original filter string parsed:
0.1 2010-09-03 00:57:55.94 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-09-02 23:32:00.000 Filter created: None ---------------------- 2010-09-02 23:32:00.000 Compressed filter used: None ---------------------- 2010-09-02 23:32:00.000 Counting total matched records with filter=None ---------------------- 2010-09-02 23:32:00.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-09-02 23:32:00.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-09-04 14:49:20.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- 77.0.172.134 to RMCA_Amphibians
2010-09-04T02:05:34+01:0077.0.172.134search
http://www.tdwg.org/schemas/abcd/1.2http://www.tdwg.org/schemas/abcd/1.2Francefalse
### ERROR LOG The Logging Results: ---------------------- 2010-09-04 12:49:20.000 Logging started. ---------------------- 2010-09-04 12:49:20.000 BioCASe protocol used. ---------------------- 2010-09-04 12:49:20.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-09-04 12:49:20.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-09-04 12:49:20.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-09-04 12:49:20.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-09-04 12:49:20.000 All parameters found in the request: {'query': '
2010-09-04T02:05:34+01:0077.0.172.134search
http://www.tdwg.org/schemas/abcd/1.2http://www.tdwg.org/schemas/abcd/1.2Francefalse
', 'request_string': '
2010-09-04T02:05:34+01:0077.0.172.134search
http://www.tdwg.org/schemas/abcd/1.2http://www.tdwg.org/schemas/abcd/1.2Francefalse
'} ---------------------- 2010-09-04 12:49:20.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-09-04 12:49:20.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-09-04 12:49:20.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_1.20.xml' ---------------------- 2010-09-04 12:49:20.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-09-04 12:49:20.000 Pickled file is of latest revision. ---------------------- 2010-09-04 12:49:20.000 Original filter string parsed:
2010-09-04T02:05:34+01:0077.0.172.134search
http://www.tdwg.org/schemas/abcd/1.2http://www.tdwg.org/schemas/abcd/1.2Francefalse
---------------------- 2010-09-04 12:49:20.000 Filter created: ("v_abcd2v06herpnet_trigger"."country" ILIKE France ) ---------------------- 2010-09-04 12:49:20.000 Compressed filter used: ("v_abcd2v06herpnet_trigger"."country" ILIKE France ) ---------------------- 2010-09-04 12:49:20.000 Record Identifier used: v_abcd2v06herpnet_trigger.pk(text) ---------------------- 2010-09-04 12:49:20.000 Use SQL LIMIT to limit the first result set of IDs only to the maximum of 10 records. ---------------------- 2010-09-04 12:49:20.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06herpnet_trigger"."pk" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" WHERE ("v_abcd2v06herpnet_trigger"."country" ILIKE 'France' ) ORDER BY "v_abcd2v06herpnet_trigger"."pk" LIMIT 11' ---------------------- 2010-09-04 12:49:21.000 Hits: 4 ---------------------- 2010-09-04 12:49:21.000 Resulting Recordset: [[528522], [528523], [528648], [528679]] ---------------------- 2010-09-04 12:49:21.000 All RecIDs retrieved from DB: [528522, 528523, 528648, 528679] ---------------------- 2010-09-04 12:49:21.000 Executing SQL: 'SELECT "v_abcd2v06herpnet_trigger"."pk", "v_abcd2v06herpnet_trigger"."institutioncode", "v_abcd2v06herpnet_trigger"."collectioncode", "v_abcd2v06contactstechnical"."fullname", "v_abcd2v06contactstechnical"."mail", "datasetname"."statistics", "v_abcd2v06herpnet_trigger"."catalognumbertext", "v_abcd2v06herpnet_trigger"."datelastmodified", "v_abcd2v06manytomanyidentifications"."preferredflag", "v_abcd2v06higherrankbymanyidentifications"."rank", "v_abcd2v06higherrankbymanyidentifications"."taxonname", "v_abcd2v06manytomanyidentifications"."fullscientificnamestring", "v_abcd2v06manytomanyidentifications"."genus", "v_abcd2v06manytomanyidentifications"."species", "v_abcd2v06manytomanyidentifications"."subspecies", "v_abcd2v06manytomanyidentifications"."authorwithoutparenthesis", "v_abcd2v06manytomanyidentifications"."authorparenthesis", "v_abcd2v06herpnet_trigger"."identifiedby", "v_abcd2v06herpnet_trigger"."dateidentificationiso", "v_abcd2v06herpnet_trigger"."remarks", "v_abcd2v06herpnet_trigger"."identificationhistory", "v_abcd2v06herpnet_trigger"."ageclass", "v_abcd2v06herpnet_trigger"."sex", "v_abcd2v06herpnet_trigger"."preparations", "v_abcd2v06herpnet_trigger"."typestatus", "v_abcd2v06herpnet_trigger"."verbatimcollectingdate", "v_abcd2v06herpnet_trigger"."dateisobegin", "v_abcd2v06herpnet_trigger"."dateisoend", "v_abcd2v06herpnet_trigger"."collector", "v_abcd2v06herpnet_trigger"."locality", "v_abcd2v06herpnet_trigger"."country", "v_abcd2v06herpnet_trigger"."countryiso3166", "v_abcd2v06herpnet_trigger"."decimallongitude", "v_abcd2v06herpnet_trigger"."decimallatitude", "v_abcd2v06herpnet_trigger"."datum", "v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters", "v_abcd2v06herpnet_trigger"."georefmethod", "v_abcd2v06herpnet_trigger"."minimumelevationinmeters", "v_abcd2v06herpnet_trigger"."maximumelevationinmeters", "v_abcd2v06herpnet_trigger"."verbatimelevation", "v_abcd2v06herpnet_trigger"."fieldnotes", "v_abcd2v06herpnet_trigger"."individualcount", "v_abcd2v06herpnet_trigger"."pk", "v_abcd2v06contactstechnical"."id", "datasetname"."datasetname", "v_abcd2v06manytomanyidentifications"."pk", "v_abcd2v06higherrankbymanyidentifications"."pk" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE ("v_abcd2v06herpnet_trigger"."pk" IN ('528522', '528523', '528648', '528679')) ORDER BY "v_abcd2v06herpnet_trigger"."pk"' ---------------------- 2010-09-04 12:49:21.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 110, in doRequest (self.resultDOM, self.resultStatus) = operationObj.search(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 205, in search (recordset, recStatus) = self._getSearchResultList() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 344, in _getSearchResultList rs = self.execSelect( [recID] + self.CMFObject.allDBAttr, comparisonOperator('in', recID, IDs), orderByList=[recID]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 73, in execSelect return self.execSQL(sql, paras) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: missing FROM-clause entry for table "v_abcd2v06contactstechnical" ---------------------- 2010-09-04 12:49:21.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-09-10 01:31:41.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-09-10 00:57:59.57 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-09-09 23:31:41.000 Logging started. ---------------------- 2010-09-09 23:31:41.000 BioCASe protocol used. ---------------------- 2010-09-09 23:31:41.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-09-09 23:31:41.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-09-09 23:31:41.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-09-09 23:31:41.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-09-09 23:31:41.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-09-10 00:57:59.57\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-09-10 00:57:59.57\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-09-10 00:57:59.57\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-09-09 23:31:41.000 Found online debuglevel setting: 1 ---------------------- 2010-09-09 23:31:41.000 Setting debuglevel from 0 to 1 ---------------------- 2010-09-09 23:31:41.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-09-09 23:31:42.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-09-09 23:31:42.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-09-09 23:31:42.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-09-09 23:31:42.000 Pickled file is of latest revision. ---------------------- 2010-09-09 23:31:42.000 Original filter string parsed:
0.1 2010-09-10 00:57:59.57 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-09-09 23:31:42.000 Filter created: None ---------------------- 2010-09-09 23:31:42.000 Compressed filter used: None ---------------------- 2010-09-09 23:31:42.000 Counting total matched records with filter=None ---------------------- 2010-09-09 23:31:42.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-09-09 23:31:42.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-09-11 21:20:11.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- 87.145.84.39 to RMCA_Amphibians
2010-09-11T08:36:39+01:0087.145.84.39search
http://www.tdwg.org/schemas/abcd/1.2http://www.tdwg.org/schemas/abcd/1.2*Abi*false
### ERROR LOG The Logging Results: ---------------------- 2010-09-11 19:20:11.000 Logging started. ---------------------- 2010-09-11 19:20:11.000 BioCASe protocol used. ---------------------- 2010-09-11 19:20:11.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-09-11 19:20:11.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-09-11 19:20:11.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-09-11 19:20:11.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-09-11 19:20:11.000 All parameters found in the request: {'query': '
2010-09-11T08:36:39+01:0087.145.84.39search
http://www.tdwg.org/schemas/abcd/1.2http://www.tdwg.org/schemas/abcd/1.2*Abi*false
', 'request_string': '
2010-09-11T08:36:39+01:0087.145.84.39search
http://www.tdwg.org/schemas/abcd/1.2http://www.tdwg.org/schemas/abcd/1.2*Abi*false
'} ---------------------- 2010-09-11 19:20:11.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-09-11 19:20:11.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-09-11 19:20:11.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_1.20.xml' ---------------------- 2010-09-11 19:20:11.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-09-11 19:20:11.000 Pickled file is of latest revision. ---------------------- 2010-09-11 19:20:11.000 Original filter string parsed:
2010-09-11T08:36:39+01:0087.145.84.39search
http://www.tdwg.org/schemas/abcd/1.2http://www.tdwg.org/schemas/abcd/1.2*Abi*false
---------------------- 2010-09-11 19:20:11.000 Filter created: ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE *Abi* ) ---------------------- 2010-09-11 19:20:11.000 Compressed filter used: ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE *Abi* ) ---------------------- 2010-09-11 19:20:11.000 Record Identifier used: v_abcd2v06herpnet_trigger.pk(text) ---------------------- 2010-09-11 19:20:11.000 Use SQL LIMIT to limit the first result set of IDs only to the maximum of 10 records. ---------------------- 2010-09-11 19:20:11.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06herpnet_trigger"."pk" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") WHERE ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE '%Abi%' ) ORDER BY "v_abcd2v06herpnet_trigger"."pk" LIMIT 11' ---------------------- 2010-09-11 19:20:12.000 Hits: 11 ---------------------- 2010-09-11 19:20:12.000 Resulting Recordset: [[519475], [519476], [519477], [519478], [519479], [519480], [519481], [519482], [519483], [519484], [519485]] ---------------------- 2010-09-11 19:20:12.000 All RecIDs retrieved from DB: [519475, 519476, 519477, 519478, 519479, 519480, 519481, 519482, 519483, 519484, 519485] ---------------------- 2010-09-11 19:20:12.000 Executing SQL: 'SELECT "v_abcd2v06herpnet_trigger"."pk", "v_abcd2v06herpnet_trigger"."institutioncode", "v_abcd2v06herpnet_trigger"."collectioncode", "v_abcd2v06contactstechnical"."fullname", "v_abcd2v06contactstechnical"."mail", "datasetname"."statistics", "v_abcd2v06herpnet_trigger"."catalognumbertext", "v_abcd2v06herpnet_trigger"."datelastmodified", "v_abcd2v06manytomanyidentifications"."preferredflag", "v_abcd2v06higherrankbymanyidentifications"."rank", "v_abcd2v06higherrankbymanyidentifications"."taxonname", "v_abcd2v06manytomanyidentifications"."fullscientificnamestring", "v_abcd2v06manytomanyidentifications"."genus", "v_abcd2v06manytomanyidentifications"."species", "v_abcd2v06manytomanyidentifications"."subspecies", "v_abcd2v06manytomanyidentifications"."authorwithoutparenthesis", "v_abcd2v06manytomanyidentifications"."authorparenthesis", "v_abcd2v06herpnet_trigger"."identifiedby", "v_abcd2v06herpnet_trigger"."dateidentificationiso", "v_abcd2v06herpnet_trigger"."remarks", "v_abcd2v06herpnet_trigger"."identificationhistory", "v_abcd2v06herpnet_trigger"."ageclass", "v_abcd2v06herpnet_trigger"."sex", "v_abcd2v06herpnet_trigger"."preparations", "v_abcd2v06herpnet_trigger"."typestatus", "v_abcd2v06herpnet_trigger"."verbatimcollectingdate", "v_abcd2v06herpnet_trigger"."dateisobegin", "v_abcd2v06herpnet_trigger"."dateisoend", "v_abcd2v06herpnet_trigger"."collector", "v_abcd2v06herpnet_trigger"."locality", "v_abcd2v06herpnet_trigger"."country", "v_abcd2v06herpnet_trigger"."countryiso3166", "v_abcd2v06herpnet_trigger"."decimallongitude", "v_abcd2v06herpnet_trigger"."decimallatitude", "v_abcd2v06herpnet_trigger"."datum", "v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters", "v_abcd2v06herpnet_trigger"."georefmethod", "v_abcd2v06herpnet_trigger"."minimumelevationinmeters", "v_abcd2v06herpnet_trigger"."maximumelevationinmeters", "v_abcd2v06herpnet_trigger"."verbatimelevation", "v_abcd2v06herpnet_trigger"."fieldnotes", "v_abcd2v06herpnet_trigger"."individualcount", "v_abcd2v06herpnet_trigger"."pk", "v_abcd2v06contactstechnical"."id", "datasetname"."datasetname", "v_abcd2v06manytomanyidentifications"."pk", "v_abcd2v06higherrankbymanyidentifications"."pk" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE ("v_abcd2v06herpnet_trigger"."pk" IN ('519475', '519476', '519477', '519478', '519479', '519480', '519481', '519482', '519483', '519484')) ORDER BY "v_abcd2v06herpnet_trigger"."pk"' ---------------------- 2010-09-11 19:20:12.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 110, in doRequest (self.resultDOM, self.resultStatus) = operationObj.search(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 205, in search (recordset, recStatus) = self._getSearchResultList() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 344, in _getSearchResultList rs = self.execSelect( [recID] + self.CMFObject.allDBAttr, comparisonOperator('in', recID, IDs), orderByList=[recID]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 73, in execSelect return self.execSQL(sql, paras) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: missing FROM-clause entry for table "v_abcd2v06contactstechnical" ---------------------- 2010-09-11 19:20:12.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-09-16 20:57:10.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-09-16 20:57:10.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA myrbwi@yktkys.com USA wbojpkzd USA 18644 USA myrbwi@yktkys.com wbojpkzd wbojpkzd
### ERROR LOG The Logging Results: ---------------------- 2010-09-16 18:57:10.000 Logging started. ---------------------- 2010-09-16 18:57:11.000 BioCASe protocol used. ---------------------- 2010-09-16 18:57:11.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-09-16 18:57:11.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-09-16 18:57:11.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-09-16 18:57:11.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-09-16 18:57:11.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-09-16 20:57:10.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n myrbwi@yktkys.com\n USA\n wbojpkzd\n USA\n 18644\n USA\n myrbwi@yktkys.com\n wbojpkzd\n wbojpkzd\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-09-16 20:57:10.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n myrbwi@yktkys.com\n USA\n wbojpkzd\n USA\n 18644\n USA\n myrbwi@yktkys.com\n wbojpkzd\n wbojpkzd\n\n\n\n \n
'} ---------------------- 2010-09-16 18:57:11.000 Found online debuglevel setting: 1 ---------------------- 2010-09-16 18:57:11.000 Setting debuglevel from 0 to 1 ---------------------- 2010-09-16 18:57:11.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-09-16 18:57:11.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-09-16 18:57:11.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-09-16 18:57:11.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-09-16 18:57:11.000 Pickled file is of latest revision. ---------------------- 2010-09-16 18:57:11.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-09-16 18:57:11.000 Original filter string parsed:
2.4.2 2010-09-16 20:57:10.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA myrbwi@yktkys.com USA wbojpkzd USA 18644 USA myrbwi@yktkys.com wbojpkzd wbojpkzd
---------------------- 2010-09-16 18:57:11.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = myrbwi@yktkys.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE wbojpkzd ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 18644 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = myrbwi@yktkys.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = wbojpkzd ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE wbojpkzd )) ---------------------- 2010-09-16 18:57:11.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = myrbwi@yktkys.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE wbojpkzd ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 18644 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = myrbwi@yktkys.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = wbojpkzd ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE wbojpkzd )) ---------------------- 2010-09-16 18:57:11.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = myrbwi@yktkys.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE wbojpkzd ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 18644 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = myrbwi@yktkys.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = wbojpkzd ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE wbojpkzd )) ---------------------- 2010-09-16 18:57:11.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = myrbwi@yktkys.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE wbojpkzd ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 18644 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = myrbwi@yktkys.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = wbojpkzd ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE wbojpkzd )) ---------------------- 2010-09-16 18:57:11.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-09-16 18:57:11.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'myrbwi@yktkys.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'wbojpkzd' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '18644' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'myrbwi@yktkys.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'wbojpkzd' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'wbojpkzd' ))' ---------------------- 2010-09-16 18:57:11.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "myrbwi@yktkys.com" ---------------------- 2010-09-16 18:57:12.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-09-17 01:31:42.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-09-17 00:58:22.51 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-09-16 23:31:42.000 Logging started. ---------------------- 2010-09-16 23:31:42.000 BioCASe protocol used. ---------------------- 2010-09-16 23:31:42.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-09-16 23:31:42.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-09-16 23:31:42.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-09-16 23:31:42.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-09-16 23:31:42.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-09-17 00:58:22.51\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-09-17 00:58:22.51\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-09-17 00:58:22.51\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-09-16 23:31:42.000 Found online debuglevel setting: 1 ---------------------- 2010-09-16 23:31:42.000 Setting debuglevel from 0 to 1 ---------------------- 2010-09-16 23:31:42.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-09-16 23:31:42.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-09-16 23:31:42.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-09-16 23:31:42.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-09-16 23:31:43.000 Pickled file is of latest revision. ---------------------- 2010-09-16 23:31:43.000 Original filter string parsed:
0.1 2010-09-17 00:58:22.51 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-09-16 23:31:43.000 Filter created: None ---------------------- 2010-09-16 23:31:43.000 Compressed filter used: None ---------------------- 2010-09-16 23:31:43.000 Counting total matched records with filter=None ---------------------- 2010-09-16 23:31:43.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-09-16 23:31:43.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS_INTERNALQUERY **************************************** ### ERROR TIME 2010-09-18 00:05:44.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians_InternalQuery
2.4.2 2010-09-18 00:05:43.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA mhcktp@jeogza.com USA avtrladln pkdjsd 53577 WPc8W mhcktp@jeogza.com mhcktp@jeogza.com avtrladln
### ERROR LOG The Logging Results: ---------------------- 2010-09-17 22:05:44.000 Logging started. ---------------------- 2010-09-17 22:05:44.000 BioCASe protocol used. ---------------------- 2010-09-17 22:05:44.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians_InternalQuery']} ---------------------- 2010-09-17 22:05:44.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians_InternalQuery/provider_setup_file.xml ---------------------- 2010-09-17 22:05:44.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-09-17 22:05:44.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-09-17 22:05:44.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-09-18 00:05:43.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n mhcktp@jeogza.com\n USA\n avtrladln\n pkdjsd\n 53577\n WPc8W\n mhcktp@jeogza.com\n mhcktp@jeogza.com\n avtrladln\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-09-18 00:05:43.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n mhcktp@jeogza.com\n USA\n avtrladln\n pkdjsd\n 53577\n WPc8W\n mhcktp@jeogza.com\n mhcktp@jeogza.com\n avtrladln\n\n\n\n \n
'} ---------------------- 2010-09-17 22:05:44.000 Found online debuglevel setting: 1 ---------------------- 2010-09-17 22:05:44.000 Setting debuglevel from 0 to 1 ---------------------- 2010-09-17 22:05:44.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-09-17 22:05:44.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-09-17 22:05:44.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians_InternalQuery/cmf_ABCD_2 06.xml' ---------------------- 2010-09-17 22:05:44.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-09-17 22:05:45.000 Pickled file is of latest revision. ---------------------- 2010-09-17 22:05:45.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-09-17 22:05:45.000 Original filter string parsed:
2.4.2 2010-09-18 00:05:43.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA mhcktp@jeogza.com USA avtrladln pkdjsd 53577 WPc8W mhcktp@jeogza.com mhcktp@jeogza.com avtrladln
---------------------- 2010-09-17 22:05:45.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" ILIKE mhcktp@jeogza.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE avtrladln ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE pkdjsd ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 53577 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE WPc8W ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" ILIKE mhcktp@jeogza.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" ILIKE mhcktp@jeogza.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE avtrladln )) ---------------------- 2010-09-17 22:05:45.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" ILIKE mhcktp@jeogza.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE avtrladln ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE pkdjsd ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 53577 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE WPc8W ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" ILIKE mhcktp@jeogza.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" ILIKE mhcktp@jeogza.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE avtrladln )) ---------------------- 2010-09-17 22:05:45.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" ILIKE mhcktp@jeogza.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE avtrladln ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE pkdjsd ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 53577 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE WPc8W ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" ILIKE mhcktp@jeogza.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" ILIKE mhcktp@jeogza.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE avtrladln )) ---------------------- 2010-09-17 22:05:45.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" ILIKE mhcktp@jeogza.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE avtrladln ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE pkdjsd ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 53577 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE WPc8W ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" ILIKE mhcktp@jeogza.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" ILIKE mhcktp@jeogza.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE avtrladln )) ---------------------- 2010-09-17 22:05:45.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-09-17 22:05:45.000 Error transforming a SQL parameter. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/select.py", line 111, in select p.value = self.trans.transformPythonVal2DB(p) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/typeconverter.py", line 129, in transformPythonVal2DB x.value = self.makeFloat(x.value) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/typeconverter.py", line 218, in _makeFloat raise SQLgenerationError() SQLgenerationError: ---------------------- 2010-09-17 22:05:45.000 Error transforming a SQL parameter. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/select.py", line 111, in select p.value = self.trans.transformPythonVal2DB(p) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/typeconverter.py", line 129, in transformPythonVal2DB x.value = self.makeFloat(x.value) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/typeconverter.py", line 218, in _makeFloat raise SQLgenerationError() SQLgenerationError: ---------------------- 2010-09-17 22:05:45.000 Error transforming a SQL parameter. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/select.py", line 111, in select p.value = self.trans.transformPythonVal2DB(p) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/typeconverter.py", line 129, in transformPythonVal2DB x.value = self.makeFloat(x.value) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/typeconverter.py", line 218, in _makeFloat raise SQLgenerationError() SQLgenerationError: ---------------------- 2010-09-17 22:05:45.000 Error transforming a SQL parameter. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/select.py", line 111, in select p.value = self.trans.transformPythonVal2DB(p) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/typeconverter.py", line 127, in transformPythonVal2DB x.value = self.makeInteger(x.value) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/typeconverter.py", line 209, in _makeInteger raise SQLgenerationError() SQLgenerationError: ---------------------- 2010-09-17 22:05:45.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'avtrladln' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'pkdjsd' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE '53577' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'WPc8W' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE ? ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" ILIKE ? ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" ILIKE ? ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE ? ))' ---------------------- 2010-09-17 22:05:45.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: syntax error at or near ")" at character 1063 ---------------------- 2010-09-17 22:05:45.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS_INTERNALQUERY **************************************** ### ERROR TIME 2010-09-18 04:09:20.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians_InternalQuery
2.4.2 2010-09-18 04:09:19.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA uqjwlw@qwnxzj.com USA sftrufpdsqa ymevghe 67549 ZmltQf uqjwlw@qwnxzj.com uqjwlw@qwnxzj.com sftrufpdsqa
### ERROR LOG The Logging Results: ---------------------- 2010-09-18 02:09:20.000 Logging started. ---------------------- 2010-09-18 02:09:20.000 BioCASe protocol used. ---------------------- 2010-09-18 02:09:20.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians_InternalQuery']} ---------------------- 2010-09-18 02:09:20.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians_InternalQuery/provider_setup_file.xml ---------------------- 2010-09-18 02:09:20.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-09-18 02:09:20.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-09-18 02:09:20.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-09-18 04:09:19.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n uqjwlw@qwnxzj.com\n USA\n sftrufpdsqa\n ymevghe\n 67549\n ZmltQf\n uqjwlw@qwnxzj.com\n uqjwlw@qwnxzj.com\n sftrufpdsqa\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-09-18 04:09:19.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n uqjwlw@qwnxzj.com\n USA\n sftrufpdsqa\n ymevghe\n 67549\n ZmltQf\n uqjwlw@qwnxzj.com\n uqjwlw@qwnxzj.com\n sftrufpdsqa\n\n\n\n \n
'} ---------------------- 2010-09-18 02:09:20.000 Found online debuglevel setting: 1 ---------------------- 2010-09-18 02:09:20.000 Setting debuglevel from 0 to 1 ---------------------- 2010-09-18 02:09:20.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-09-18 02:09:20.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-09-18 02:09:20.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians_InternalQuery/cmf_ABCD_2 06.xml' ---------------------- 2010-09-18 02:09:20.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-09-18 02:09:20.000 Pickled file is of latest revision. ---------------------- 2010-09-18 02:09:20.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-09-18 02:09:20.000 Original filter string parsed:
2.4.2 2010-09-18 04:09:19.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA uqjwlw@qwnxzj.com USA sftrufpdsqa ymevghe 67549 ZmltQf uqjwlw@qwnxzj.com uqjwlw@qwnxzj.com sftrufpdsqa
---------------------- 2010-09-18 02:09:20.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" ILIKE uqjwlw@qwnxzj.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE sftrufpdsqa ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE ymevghe ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 67549 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE ZmltQf ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" ILIKE uqjwlw@qwnxzj.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" ILIKE uqjwlw@qwnxzj.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE sftrufpdsqa )) ---------------------- 2010-09-18 02:09:20.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" ILIKE uqjwlw@qwnxzj.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE sftrufpdsqa ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE ymevghe ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 67549 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE ZmltQf ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" ILIKE uqjwlw@qwnxzj.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" ILIKE uqjwlw@qwnxzj.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE sftrufpdsqa )) ---------------------- 2010-09-18 02:09:20.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" ILIKE uqjwlw@qwnxzj.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE sftrufpdsqa ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE ymevghe ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 67549 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE ZmltQf ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" ILIKE uqjwlw@qwnxzj.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" ILIKE uqjwlw@qwnxzj.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE sftrufpdsqa )) ---------------------- 2010-09-18 02:09:20.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" ILIKE uqjwlw@qwnxzj.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE sftrufpdsqa ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE ymevghe ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 67549 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE ZmltQf ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" ILIKE uqjwlw@qwnxzj.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" ILIKE uqjwlw@qwnxzj.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE sftrufpdsqa )) ---------------------- 2010-09-18 02:09:20.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-09-18 02:09:20.000 Error transforming a SQL parameter. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/select.py", line 111, in select p.value = self.trans.transformPythonVal2DB(p) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/typeconverter.py", line 129, in transformPythonVal2DB x.value = self.makeFloat(x.value) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/typeconverter.py", line 218, in _makeFloat raise SQLgenerationError() SQLgenerationError: ---------------------- 2010-09-18 02:09:20.000 Error transforming a SQL parameter. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/select.py", line 111, in select p.value = self.trans.transformPythonVal2DB(p) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/typeconverter.py", line 129, in transformPythonVal2DB x.value = self.makeFloat(x.value) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/typeconverter.py", line 218, in _makeFloat raise SQLgenerationError() SQLgenerationError: ---------------------- 2010-09-18 02:09:20.000 Error transforming a SQL parameter. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/select.py", line 111, in select p.value = self.trans.transformPythonVal2DB(p) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/typeconverter.py", line 129, in transformPythonVal2DB x.value = self.makeFloat(x.value) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/typeconverter.py", line 218, in _makeFloat raise SQLgenerationError() SQLgenerationError: ---------------------- 2010-09-18 02:09:20.000 Error transforming a SQL parameter. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/select.py", line 111, in select p.value = self.trans.transformPythonVal2DB(p) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/typeconverter.py", line 127, in transformPythonVal2DB x.value = self.makeInteger(x.value) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/typeconverter.py", line 209, in _makeInteger raise SQLgenerationError() SQLgenerationError: ---------------------- 2010-09-18 02:09:20.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'sftrufpdsqa' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'ymevghe' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE '67549' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'ZmltQf' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE ? ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" ILIKE ? ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" ILIKE ? ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE ? ))' ---------------------- 2010-09-18 02:09:20.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: syntax error at or near ")" at character 1067 ---------------------- 2010-09-18 02:09:20.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS_INTERNALQUERY **************************************** ### ERROR TIME 2010-09-18 21:52:49.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians_InternalQuery
2.4.2 2010-09-18 21:52:48.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA zjinrp@llbfto.com USA qwaheeabb cjldfexsn 73220 wq9QsQ zjinrp@llbfto.com zjinrp@llbfto.com qwaheeabb
### ERROR LOG The Logging Results: ---------------------- 2010-09-18 19:52:49.000 Logging started. ---------------------- 2010-09-18 19:52:49.000 BioCASe protocol used. ---------------------- 2010-09-18 19:52:49.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians_InternalQuery']} ---------------------- 2010-09-18 19:52:49.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians_InternalQuery/provider_setup_file.xml ---------------------- 2010-09-18 19:52:49.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-09-18 19:52:49.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-09-18 19:52:49.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-09-18 21:52:48.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n zjinrp@llbfto.com\n USA\n qwaheeabb\n cjldfexsn\n 73220\n wq9QsQ\n zjinrp@llbfto.com\n zjinrp@llbfto.com\n qwaheeabb\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-09-18 21:52:48.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n zjinrp@llbfto.com\n USA\n qwaheeabb\n cjldfexsn\n 73220\n wq9QsQ\n zjinrp@llbfto.com\n zjinrp@llbfto.com\n qwaheeabb\n\n\n\n \n
'} ---------------------- 2010-09-18 19:52:49.000 Found online debuglevel setting: 1 ---------------------- 2010-09-18 19:52:49.000 Setting debuglevel from 0 to 1 ---------------------- 2010-09-18 19:52:49.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-09-18 19:52:49.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-09-18 19:52:49.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians_InternalQuery/cmf_ABCD_2 06.xml' ---------------------- 2010-09-18 19:52:49.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-09-18 19:52:49.000 Pickled file is of latest revision. ---------------------- 2010-09-18 19:52:49.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-09-18 19:52:49.000 Original filter string parsed:
2.4.2 2010-09-18 21:52:48.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA zjinrp@llbfto.com USA qwaheeabb cjldfexsn 73220 wq9QsQ zjinrp@llbfto.com zjinrp@llbfto.com qwaheeabb
---------------------- 2010-09-18 19:52:49.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" ILIKE zjinrp@llbfto.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE qwaheeabb ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE cjldfexsn ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 73220 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE wq9QsQ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" ILIKE zjinrp@llbfto.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" ILIKE zjinrp@llbfto.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE qwaheeabb )) ---------------------- 2010-09-18 19:52:50.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" ILIKE zjinrp@llbfto.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE qwaheeabb ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE cjldfexsn ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 73220 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE wq9QsQ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" ILIKE zjinrp@llbfto.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" ILIKE zjinrp@llbfto.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE qwaheeabb )) ---------------------- 2010-09-18 19:52:50.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" ILIKE zjinrp@llbfto.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE qwaheeabb ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE cjldfexsn ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 73220 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE wq9QsQ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" ILIKE zjinrp@llbfto.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" ILIKE zjinrp@llbfto.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE qwaheeabb )) ---------------------- 2010-09-18 19:52:50.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" ILIKE zjinrp@llbfto.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE qwaheeabb ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE cjldfexsn ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 73220 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE wq9QsQ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" ILIKE zjinrp@llbfto.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" ILIKE zjinrp@llbfto.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE qwaheeabb )) ---------------------- 2010-09-18 19:52:50.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-09-18 19:52:50.000 Error transforming a SQL parameter. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/select.py", line 111, in select p.value = self.trans.transformPythonVal2DB(p) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/typeconverter.py", line 129, in transformPythonVal2DB x.value = self.makeFloat(x.value) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/typeconverter.py", line 218, in _makeFloat raise SQLgenerationError() SQLgenerationError: ---------------------- 2010-09-18 19:52:50.000 Error transforming a SQL parameter. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/select.py", line 111, in select p.value = self.trans.transformPythonVal2DB(p) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/typeconverter.py", line 129, in transformPythonVal2DB x.value = self.makeFloat(x.value) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/typeconverter.py", line 218, in _makeFloat raise SQLgenerationError() SQLgenerationError: ---------------------- 2010-09-18 19:52:50.000 Error transforming a SQL parameter. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/select.py", line 111, in select p.value = self.trans.transformPythonVal2DB(p) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/typeconverter.py", line 129, in transformPythonVal2DB x.value = self.makeFloat(x.value) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/typeconverter.py", line 218, in _makeFloat raise SQLgenerationError() SQLgenerationError: ---------------------- 2010-09-18 19:52:50.000 Error transforming a SQL parameter. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/select.py", line 111, in select p.value = self.trans.transformPythonVal2DB(p) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/typeconverter.py", line 127, in transformPythonVal2DB x.value = self.makeInteger(x.value) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/typeconverter.py", line 209, in _makeInteger raise SQLgenerationError() SQLgenerationError: ---------------------- 2010-09-18 19:52:50.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'qwaheeabb' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'cjldfexsn' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE '73220' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'wq9QsQ' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE ? ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" ILIKE ? ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" ILIKE ? ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE ? ))' ---------------------- 2010-09-18 19:52:50.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: syntax error at or near ")" at character 1067 ---------------------- 2010-09-18 19:52:50.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-09-19 09:48:21.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians20070608
2.4.2 2010-09-19 09:48:21.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA arigons3456@gmail.com USA WaldosM USA 6700 USA arigons3456@gmail.com WaldosM WaldosM
### ERROR LOG The Logging Results: ---------------------- 2010-09-19 07:48:21.000 Logging started. ---------------------- 2010-09-19 07:48:21.000 BioCASe protocol used. ---------------------- 2010-09-19 07:48:21.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-09-19 07:48:21.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-09-19 07:48:21.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-09-19 07:48:21.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-09-19 07:48:21.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-09-19 09:48:21.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n arigons3456@gmail.com\n USA\n WaldosM\n USA\n 6700\n USA\n arigons3456@gmail.com\n WaldosM\n WaldosM\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-09-19 09:48:21.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n arigons3456@gmail.com\n USA\n WaldosM\n USA\n 6700\n USA\n arigons3456@gmail.com\n WaldosM\n WaldosM\n\n\n\n \n
'} ---------------------- 2010-09-19 07:48:21.000 Found online debuglevel setting: 1 ---------------------- 2010-09-19 07:48:21.000 Setting debuglevel from 0 to 1 ---------------------- 2010-09-19 07:48:21.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-09-19 07:48:22.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-09-19 07:48:22.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-09-19 07:48:22.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-09-19 07:48:22.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 231, in getCMFobject CMFObject.loadCMFdata(self.psfObj.getCMFfilename(namespace), psfObj=self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-09-19 07:48:22.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 118, in scan self.CMFObject = self.getCMFobject(self.requestObj.reqSchema, altRootTableKey=self.altRootTableAlias) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 237, in getCMFobject raise CMFError(log=self.logObj, cmf=namespace) CMFError: ---------------------- 2010-09-19 07:48:22.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-09-19 09:48:24.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 <- to RMCA_Amphibians20070608
2.4.2 2010-09-19 09:48:23.000 search
http://www.tdwg.org/schemas/abcd/2.06 http://www.tdwg.org/schemas/abcd/2.06 USA arigons3456@gmail.com USA WaldosM USA 6700 USA arigons3456@gmail.com WaldosM WaldosM None False
### ERROR LOG The Logging Results: ---------------------- 2010-09-19 07:48:24.000 Logging started. ---------------------- 2010-09-19 07:48:24.000 BioCASe protocol used. ---------------------- 2010-09-19 07:48:24.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-09-19 07:48:24.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-09-19 07:48:24.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-09-19 07:48:24.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-09-19 07:48:24.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 2.4.2\n 2010-09-19 09:48:23.000\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n http://www.tdwg.org/schemas/abcd/2.06\n \n \n\n \n \n \n \n \n \n \n \n USA\n arigons3456@gmail.com\n \n USA\n \n WaldosM\n \n USA\n \n 6700\n \n USA\n \n arigons3456@gmail.com\n \n WaldosM\n \n WaldosM\n None\n\n \n False\n \n
\n ', 'request_string': '\n \n \n
\n 2.4.2\n 2010-09-19 09:48:23.000\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n http://www.tdwg.org/schemas/abcd/2.06\n \n \n\n \n \n \n \n \n \n \n \n USA\n arigons3456@gmail.com\n \n USA\n \n WaldosM\n \n USA\n \n 6700\n \n USA\n \n arigons3456@gmail.com\n \n WaldosM\n \n WaldosM\n None\n\n \n False\n \n
\n '} ---------------------- 2010-09-19 07:48:24.000 Found online debuglevel setting: 1 ---------------------- 2010-09-19 07:48:24.000 Setting debuglevel from 0 to 1 ---------------------- 2010-09-19 07:48:24.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-09-19 07:48:24.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-09-19 07:48:24.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-09-19 07:48:24.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-09-19 07:48:24.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 231, in getCMFobject CMFObject.loadCMFdata(self.psfObj.getCMFfilename(namespace), psfObj=self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-09-19 07:48:24.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 110, in doRequest (self.resultDOM, self.resultStatus) = operationObj.search(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 184, in search self.CMFObject = self.getCMFobject(self.requestObj.resSchema, self.removeCMFSubtreePaths, altRootTableKey=self.altRootTableAlias) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 237, in getCMFobject raise CMFError(log=self.logObj, cmf=namespace) CMFError: ---------------------- 2010-09-19 07:48:24.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-09-19 11:59:09.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2010-09-19 09:59:09.000 Logging started. ---------------------- 2010-09-19 09:59:09.000 BioCASe protocol used. ---------------------- 2010-09-19 09:59:09.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-09-19 09:59:09.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-09-19 09:59:09.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-09-19 09:59:10.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2010-09-19 09:59:10.000 Unknown request type! Default to capabilities. ---------------------- 2010-09-19 09:59:10.000 Destination hostname could not be determined ---------------------- 2010-09-19 09:59:10.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2010-09-19 09:59:10.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2010-09-19 09:59:10.000 Reset CMF convenience cache data hash. ---------------------- 2010-09-19 09:59:10.000 Loading CMF from the source XML file. ---------------------- 2010-09-19 09:59:10.000 CMF Version 2.1 detected. ---------------------- 2010-09-19 09:59:10.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2010-09-19 09:59:10.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2010-09-19 09:59:10.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-09-19 09:59:10.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-09-19 09:59:10.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-09-19 09:59:10.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-09-19 09:59:10.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-09-19 09:59:10.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-09-20 11:16:06.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-09-20 11:16:05.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA arigons3456@gmail.com USA WaldosM USA 5610 USA arigons3456@gmail.com WaldosM WaldosM
### ERROR LOG The Logging Results: ---------------------- 2010-09-20 09:16:06.000 Logging started. ---------------------- 2010-09-20 09:16:06.000 BioCASe protocol used. ---------------------- 2010-09-20 09:16:06.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-09-20 09:16:06.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-09-20 09:16:06.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-09-20 09:16:06.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-09-20 09:16:06.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-09-20 11:16:05.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n arigons3456@gmail.com\n USA\n WaldosM\n USA\n 5610\n USA\n arigons3456@gmail.com\n WaldosM\n WaldosM\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-09-20 11:16:05.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n arigons3456@gmail.com\n USA\n WaldosM\n USA\n 5610\n USA\n arigons3456@gmail.com\n WaldosM\n WaldosM\n\n\n\n \n
'} ---------------------- 2010-09-20 09:16:06.000 Found online debuglevel setting: 1 ---------------------- 2010-09-20 09:16:06.000 Setting debuglevel from 0 to 1 ---------------------- 2010-09-20 09:16:06.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-09-20 09:16:06.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-09-20 09:16:06.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-09-20 09:16:06.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-09-20 09:16:07.000 Pickled file is of latest revision. ---------------------- 2010-09-20 09:16:07.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-09-20 09:16:07.000 Original filter string parsed:
2.4.2 2010-09-20 11:16:05.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA arigons3456@gmail.com USA WaldosM USA 5610 USA arigons3456@gmail.com WaldosM WaldosM
---------------------- 2010-09-20 09:16:07.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = arigons3456@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE WaldosM ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 5610 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = arigons3456@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = WaldosM ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE WaldosM )) ---------------------- 2010-09-20 09:16:07.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = arigons3456@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE WaldosM ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 5610 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = arigons3456@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = WaldosM ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE WaldosM )) ---------------------- 2010-09-20 09:16:07.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = arigons3456@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE WaldosM ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 5610 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = arigons3456@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = WaldosM ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE WaldosM )) ---------------------- 2010-09-20 09:16:07.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = arigons3456@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE WaldosM ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 5610 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = arigons3456@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = WaldosM ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE WaldosM )) ---------------------- 2010-09-20 09:16:07.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-09-20 09:16:07.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'arigons3456@gmail.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'WaldosM' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '5610' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'arigons3456@gmail.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'WaldosM' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'WaldosM' ))' ---------------------- 2010-09-20 09:16:07.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "arigons3456@gmail.com" ---------------------- 2010-09-20 09:16:07.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-09-20 11:16:09.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 <- to RMCA_Amphibians
2.4.2 2010-09-20 11:16:09.000 search
http://www.tdwg.org/schemas/abcd/2.06 http://www.tdwg.org/schemas/abcd/2.06 USA arigons3456@gmail.com USA WaldosM USA 5610 USA arigons3456@gmail.com WaldosM WaldosM None False
### ERROR LOG The Logging Results: ---------------------- 2010-09-20 09:16:09.000 Logging started. ---------------------- 2010-09-20 09:16:09.000 BioCASe protocol used. ---------------------- 2010-09-20 09:16:09.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-09-20 09:16:09.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-09-20 09:16:09.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-09-20 09:16:09.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-09-20 09:16:09.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 2.4.2\n 2010-09-20 11:16:09.000\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n http://www.tdwg.org/schemas/abcd/2.06\n \n \n\n \n \n \n \n \n \n \n \n USA\n arigons3456@gmail.com\n \n USA\n \n WaldosM\n \n USA\n \n 5610\n \n USA\n \n arigons3456@gmail.com\n \n WaldosM\n \n WaldosM\n None\n\n \n False\n \n
\n ', 'request_string': '\n \n \n
\n 2.4.2\n 2010-09-20 11:16:09.000\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n http://www.tdwg.org/schemas/abcd/2.06\n \n \n\n \n \n \n \n \n \n \n \n USA\n arigons3456@gmail.com\n \n USA\n \n WaldosM\n \n USA\n \n 5610\n \n USA\n \n arigons3456@gmail.com\n \n WaldosM\n \n WaldosM\n None\n\n \n False\n \n
\n '} ---------------------- 2010-09-20 09:16:09.000 Found online debuglevel setting: 1 ---------------------- 2010-09-20 09:16:09.000 Setting debuglevel from 0 to 1 ---------------------- 2010-09-20 09:16:09.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-09-20 09:16:09.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-09-20 09:16:09.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-09-20 09:16:09.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-09-20 09:16:10.000 Pickled file is of latest revision. ---------------------- 2010-09-20 09:16:10.000 Original filter string parsed:
2.4.2 2010-09-20 11:16:09.000 search
http://www.tdwg.org/schemas/abcd/2.06 http://www.tdwg.org/schemas/abcd/2.06 USA arigons3456@gmail.com USA WaldosM USA 5610 USA arigons3456@gmail.com WaldosM WaldosM None False
---------------------- 2010-09-20 09:16:10.000 Filter created: (((((((((("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = arigons3456@gmail.com )) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA )) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE WaldosM )) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA )) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 5610 )) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA )) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = arigons3456@gmail.com )) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = WaldosM )) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE WaldosM ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" = None )) ---------------------- 2010-09-20 09:16:10.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = arigons3456@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE WaldosM ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 5610 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = arigons3456@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = WaldosM ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE WaldosM ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" = None )) ---------------------- 2010-09-20 09:16:10.000 Record Identifier used: v_abcd2v06herpnet_trigger.pk(text) ---------------------- 2010-09-20 09:16:10.000 Use SQL LIMIT to limit the first result set of IDs only to the maximum of 1000 records. ---------------------- 2010-09-20 09:16:10.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06herpnet_trigger"."pk" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'arigons3456@gmail.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'WaldosM' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '5610' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'arigons3456@gmail.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'WaldosM' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'WaldosM' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" = 'None' )) ORDER BY "v_abcd2v06herpnet_trigger"."pk" LIMIT 1001' ---------------------- 2010-09-20 09:16:10.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 110, in doRequest (self.resultDOM, self.resultStatus) = operationObj.search(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 205, in search (recordset, recStatus) = self._getSearchResultList() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 324, in _getSearchResultList AllIDs = [ item[0] for item in self.execSelect([recID], self.requestObj.filter, orderByList=[recID], limit=start+limit)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 73, in execSelect return self.execSQL(sql, paras) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "arigons3456@gmail.com" ---------------------- 2010-09-20 09:16:10.000 Setting debuglevel from 1 to 3 **************************************** PONTAURUS **************************************** ### ERROR TIME 2010-09-20 15:46:23.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to pontaurus
2.4.2 2010-09-20 15:46:19.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString wlfwpuswj USA USA 4825 tcgcfuz
### ERROR LOG The Logging Results: ---------------------- 2010-09-20 13:46:23.000 Logging started. ---------------------- 2010-09-20 13:46:23.000 BioCASe protocol used. ---------------------- 2010-09-20 13:46:23.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['pontaurus']} ---------------------- 2010-09-20 13:46:23.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/pontaurus/provider_setup_file.xml ---------------------- 2010-09-20 13:46:23.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-09-20 13:46:24.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-09-20 13:46:24.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-09-20 15:46:19.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n wlfwpuswj\n USA\n USA\n 4825\n tcgcfuz\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-09-20 15:46:19.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n wlfwpuswj\n USA\n USA\n 4825\n tcgcfuz\n\n\n\n \n
'} ---------------------- 2010-09-20 13:46:24.000 Found online debuglevel setting: 1 ---------------------- 2010-09-20 13:46:24.000 Setting debuglevel from 0 to 1 ---------------------- 2010-09-20 13:46:24.000 The biocase.wrapper.dbmod.dbmod_mysql database module has been used. ---------------------- 2010-09-20 13:46:24.000 No DB connection could be established. Please verify DB state and connection parameters in your provider_setup_file.xml Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_mysql.py", line 55, in createDBconnection return MySQLdb.connect( host=self.psfObj.dbIP, db=self.psfObj.datasource, user=self.psfObj.user, passwd=self.psfObj.password ) File "/usr/lib/python2.4/site-packages/MySQLdb/__init__.py", line 66, in Connect return Connection(*args, **kwargs) File "/usr/lib/python2.4/site-packages/MySQLdb/connections.py", line 134, in __init__ super(Connection, self).__init__(*args, **kwargs2) OperationalError: (1045, "Access denied for user 'WebUser'@'localhost' (using password: NO)") ---------------------- 2010-09-20 13:46:24.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 75, in doRequest operationObj = getOperationsObjectForDBMod(self.psfObj, self.logObj, self.responseObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 354, in getOperationsObjectForDBMod operationsObj = operations(psfObj, logObj, removeCMFSubtreePaths, altRootTableAlias) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 68, in __init__ DBModuleClass.__init__(self, psfObj, logObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_mysql.py", line 37, in __init__ DBBasemodule.__init__(self, psfObj, logObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 43, in __init__ self.conn = self.createDBconnection() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_mysql.py", line 57, in createDBconnection raise ConnectionError(log=self.logObj) ConnectionError: ---------------------- 2010-09-20 13:46:25.000 Setting debuglevel from 1 to 3 **************************************** PONTAURUS **************************************** ### ERROR TIME 2010-09-21 07:54:12.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to pontaurus
2.4.2 2010-09-21 07:54:12.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString jgxltummheu USA USA 5673 eomyjn
### ERROR LOG The Logging Results: ---------------------- 2010-09-21 05:54:12.000 Logging started. ---------------------- 2010-09-21 05:54:12.000 BioCASe protocol used. ---------------------- 2010-09-21 05:54:12.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['pontaurus']} ---------------------- 2010-09-21 05:54:12.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/pontaurus/provider_setup_file.xml ---------------------- 2010-09-21 05:54:12.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-09-21 05:54:12.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-09-21 05:54:12.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-09-21 07:54:12.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n jgxltummheu\n USA\n USA\n 5673\n eomyjn\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-09-21 07:54:12.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n jgxltummheu\n USA\n USA\n 5673\n eomyjn\n\n\n\n \n
'} ---------------------- 2010-09-21 05:54:12.000 Found online debuglevel setting: 1 ---------------------- 2010-09-21 05:54:12.000 Setting debuglevel from 0 to 1 ---------------------- 2010-09-21 05:54:12.000 The biocase.wrapper.dbmod.dbmod_mysql database module has been used. ---------------------- 2010-09-21 05:54:13.000 No DB connection could be established. Please verify DB state and connection parameters in your provider_setup_file.xml Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_mysql.py", line 55, in createDBconnection return MySQLdb.connect( host=self.psfObj.dbIP, db=self.psfObj.datasource, user=self.psfObj.user, passwd=self.psfObj.password ) File "/usr/lib/python2.4/site-packages/MySQLdb/__init__.py", line 66, in Connect return Connection(*args, **kwargs) File "/usr/lib/python2.4/site-packages/MySQLdb/connections.py", line 134, in __init__ super(Connection, self).__init__(*args, **kwargs2) OperationalError: (1045, "Access denied for user 'WebUser'@'localhost' (using password: NO)") ---------------------- 2010-09-21 05:54:13.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 75, in doRequest operationObj = getOperationsObjectForDBMod(self.psfObj, self.logObj, self.responseObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 354, in getOperationsObjectForDBMod operationsObj = operations(psfObj, logObj, removeCMFSubtreePaths, altRootTableAlias) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 68, in __init__ DBModuleClass.__init__(self, psfObj, logObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_mysql.py", line 37, in __init__ DBBasemodule.__init__(self, psfObj, logObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 43, in __init__ self.conn = self.createDBconnection() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_mysql.py", line 57, in createDBconnection raise ConnectionError(log=self.logObj) ConnectionError: ---------------------- 2010-09-21 05:54:13.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-09-21 14:06:25.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 192.38.28.80 to RMCA_Amphibians
2010-09-21T13:33:18+01:00 192.38.28.80 http://193.190.223.48/biocase/pywrapper.cgi?dsa=RMCA_Amphibians search
http://www.tdwg.org/schemas/abcd/2.06 http://www.tdwg.org/schemas/abcd/2.06 * false
### ERROR LOG The Logging Results: ---------------------- 2010-09-21 12:06:25.000 Logging started. ---------------------- 2010-09-21 12:06:25.000 BioCASe protocol used. ---------------------- 2010-09-21 12:06:25.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-09-21 12:06:25.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-09-21 12:06:25.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-09-21 12:06:25.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-09-21 12:06:25.000 All parameters found in the request: {'query': "\n\n
\n 2010-09-21T13:33:18+01:00\n 192.38.28.80\n http://193.190.223.48/biocase/pywrapper.cgi?dsa=RMCA_Amphibians\n search\n
\n\n http://www.tdwg.org/schemas/abcd/2.06\n http://www.tdwg.org/schemas/abcd/2.06\n \n\t*\n \n false\n\n
\n", 'request_string': "\n\n \n
\n 2.4.2\n 2010-09-29 16:04:59.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n vLVgurFpq\n gOcXOcRcyDvQ\n VoKkGiqzkWACHhoSQR\n drglewjwl\n omSgUSjbRu\n bhdWgBidFTdtBhq\n jODYhchnOzE\n lESSIYwHcYcWDJl\n lMvngWLlxEODTovy\n drglewjwl\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-09-29 16:04:59.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n vLVgurFpq\n gOcXOcRcyDvQ\n VoKkGiqzkWACHhoSQR\n drglewjwl\n omSgUSjbRu\n bhdWgBidFTdtBhq\n jODYhchnOzE\n lESSIYwHcYcWDJl\n lMvngWLlxEODTovy\n drglewjwl\n\n\n\n \n
'} ---------------------- 2010-09-29 14:05:00.000 Found online debuglevel setting: 1 ---------------------- 2010-09-29 14:05:00.000 Setting debuglevel from 0 to 1 ---------------------- 2010-09-29 14:05:00.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-09-29 14:05:01.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-09-29 14:05:01.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-09-29 14:05:01.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-09-29 14:05:01.000 Pickled file is of latest revision. ---------------------- 2010-09-29 14:05:01.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-09-29 14:05:01.000 Original filter string parsed:
2.4.2 2010-09-29 16:04:59.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString vLVgurFpq gOcXOcRcyDvQ VoKkGiqzkWACHhoSQR drglewjwl omSgUSjbRu bhdWgBidFTdtBhq jODYhchnOzE lESSIYwHcYcWDJl lMvngWLlxEODTovy drglewjwl
---------------------- 2010-09-29 14:05:01.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE vLVgurFpq ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = gOcXOcRcyDvQ ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE VoKkGiqzkWACHhoSQR ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE drglewjwl ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE omSgUSjbRu ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE bhdWgBidFTdtBhq ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE jODYhchnOzE ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = lESSIYwHcYcWDJl ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = lMvngWLlxEODTovy ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE drglewjwl )) ---------------------- 2010-09-29 14:05:01.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE vLVgurFpq ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = gOcXOcRcyDvQ ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE VoKkGiqzkWACHhoSQR ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE drglewjwl ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE omSgUSjbRu ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE bhdWgBidFTdtBhq ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE jODYhchnOzE ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = lESSIYwHcYcWDJl ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = lMvngWLlxEODTovy ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE drglewjwl )) ---------------------- 2010-09-29 14:05:01.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE vLVgurFpq ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = gOcXOcRcyDvQ ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE VoKkGiqzkWACHhoSQR ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE drglewjwl ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE omSgUSjbRu ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE bhdWgBidFTdtBhq ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE jODYhchnOzE ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = lESSIYwHcYcWDJl ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = lMvngWLlxEODTovy ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE drglewjwl )) ---------------------- 2010-09-29 14:05:01.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE vLVgurFpq ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = gOcXOcRcyDvQ ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE VoKkGiqzkWACHhoSQR ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE drglewjwl ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE omSgUSjbRu ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE bhdWgBidFTdtBhq ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE jODYhchnOzE ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = lESSIYwHcYcWDJl ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = lMvngWLlxEODTovy ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE drglewjwl )) ---------------------- 2010-09-29 14:05:01.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-09-29 14:05:01.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'vLVgurFpq' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'gOcXOcRcyDvQ' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'VoKkGiqzkWACHhoSQR' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'drglewjwl' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'omSgUSjbRu' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'bhdWgBidFTdtBhq' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'jODYhchnOzE' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'lESSIYwHcYcWDJl' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'lMvngWLlxEODTovy' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'drglewjwl' ))' ---------------------- 2010-09-29 14:05:01.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "gOcXOcRcyDvQ" ---------------------- 2010-09-29 14:05:01.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS_INTERNALQUERY **************************************** ### ERROR TIME 2010-09-29 16:05:02.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians_InternalQuery
2.4.2 2010-09-29 16:04:59.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString dSvJyKsIAZPSS TdfjEZFPdwHwfnRkn ZsTABznIIkdToH yudojtucve XqLXcHCaJFijLIcNFMr eeCNAwTXxbiVJjaT kHDlJIqvSgMFpT bYysMrxwHAs ZaFdSjWURDPqlUkJ yudojtucve
### ERROR LOG The Logging Results: ---------------------- 2010-09-29 14:05:02.000 Logging started. ---------------------- 2010-09-29 14:05:03.000 BioCASe protocol used. ---------------------- 2010-09-29 14:05:03.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians_InternalQuery']} ---------------------- 2010-09-29 14:05:03.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians_InternalQuery/provider_setup_file.xml ---------------------- 2010-09-29 14:05:03.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-09-29 14:05:03.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-09-29 14:05:03.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-09-29 16:04:59.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n dSvJyKsIAZPSS\n TdfjEZFPdwHwfnRkn\n ZsTABznIIkdToH\n yudojtucve\n XqLXcHCaJFijLIcNFMr\n eeCNAwTXxbiVJjaT\n kHDlJIqvSgMFpT\n bYysMrxwHAs\n ZaFdSjWURDPqlUkJ\n yudojtucve\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-09-29 16:04:59.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n dSvJyKsIAZPSS\n TdfjEZFPdwHwfnRkn\n ZsTABznIIkdToH\n yudojtucve\n XqLXcHCaJFijLIcNFMr\n eeCNAwTXxbiVJjaT\n kHDlJIqvSgMFpT\n bYysMrxwHAs\n ZaFdSjWURDPqlUkJ\n yudojtucve\n\n\n\n \n
'} ---------------------- 2010-09-29 14:05:03.000 Found online debuglevel setting: 1 ---------------------- 2010-09-29 14:05:03.000 Setting debuglevel from 0 to 1 ---------------------- 2010-09-29 14:05:03.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-09-29 14:05:04.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-09-29 14:05:04.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians_InternalQuery/cmf_ABCD_2 06.xml' ---------------------- 2010-09-29 14:05:04.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-09-29 14:05:04.000 Pickled file is of latest revision. ---------------------- 2010-09-29 14:05:04.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-09-29 14:05:04.000 Original filter string parsed:
2.4.2 2010-09-29 16:04:59.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString dSvJyKsIAZPSS TdfjEZFPdwHwfnRkn ZsTABznIIkdToH yudojtucve XqLXcHCaJFijLIcNFMr eeCNAwTXxbiVJjaT kHDlJIqvSgMFpT bYysMrxwHAs ZaFdSjWURDPqlUkJ yudojtucve
---------------------- 2010-09-29 14:05:04.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE dSvJyKsIAZPSS ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = TdfjEZFPdwHwfnRkn ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE ZsTABznIIkdToH ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE yudojtucve ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE XqLXcHCaJFijLIcNFMr ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE eeCNAwTXxbiVJjaT ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE kHDlJIqvSgMFpT ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = bYysMrxwHAs ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ZaFdSjWURDPqlUkJ ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE yudojtucve )) ---------------------- 2010-09-29 14:05:04.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE dSvJyKsIAZPSS ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = TdfjEZFPdwHwfnRkn ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE ZsTABznIIkdToH ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE yudojtucve ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE XqLXcHCaJFijLIcNFMr ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE eeCNAwTXxbiVJjaT ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE kHDlJIqvSgMFpT ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = bYysMrxwHAs ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ZaFdSjWURDPqlUkJ ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE yudojtucve )) ---------------------- 2010-09-29 14:05:04.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE dSvJyKsIAZPSS ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = TdfjEZFPdwHwfnRkn ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE ZsTABznIIkdToH ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE yudojtucve ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE XqLXcHCaJFijLIcNFMr ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE eeCNAwTXxbiVJjaT ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE kHDlJIqvSgMFpT ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = bYysMrxwHAs ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ZaFdSjWURDPqlUkJ ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE yudojtucve )) ---------------------- 2010-09-29 14:05:04.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE dSvJyKsIAZPSS ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = TdfjEZFPdwHwfnRkn ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE ZsTABznIIkdToH ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE yudojtucve ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE XqLXcHCaJFijLIcNFMr ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE eeCNAwTXxbiVJjaT ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE kHDlJIqvSgMFpT ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = bYysMrxwHAs ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ZaFdSjWURDPqlUkJ ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE yudojtucve )) ---------------------- 2010-09-29 14:05:04.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-09-29 14:05:04.000 Error transforming a SQL parameter. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/select.py", line 111, in select p.value = self.trans.transformPythonVal2DB(p) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/typeconverter.py", line 129, in transformPythonVal2DB x.value = self.makeFloat(x.value) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/typeconverter.py", line 218, in _makeFloat raise SQLgenerationError() SQLgenerationError: ---------------------- 2010-09-29 14:05:04.000 Error transforming a SQL parameter. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/select.py", line 111, in select p.value = self.trans.transformPythonVal2DB(p) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/typeconverter.py", line 129, in transformPythonVal2DB x.value = self.makeFloat(x.value) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/typeconverter.py", line 218, in _makeFloat raise SQLgenerationError() SQLgenerationError: ---------------------- 2010-09-29 14:05:04.000 Error transforming a SQL parameter. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/select.py", line 111, in select p.value = self.trans.transformPythonVal2DB(p) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/typeconverter.py", line 129, in transformPythonVal2DB x.value = self.makeFloat(x.value) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/typeconverter.py", line 218, in _makeFloat raise SQLgenerationError() SQLgenerationError: ---------------------- 2010-09-29 14:05:04.000 Error transforming a SQL parameter. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/select.py", line 111, in select p.value = self.trans.transformPythonVal2DB(p) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/typeconverter.py", line 127, in transformPythonVal2DB x.value = self.makeInteger(x.value) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/typeconverter.py", line 209, in _makeInteger raise SQLgenerationError() SQLgenerationError: ---------------------- 2010-09-29 14:05:04.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'dSvJyKsIAZPSS' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'ZsTABznIIkdToH' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'yudojtucve' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'XqLXcHCaJFijLIcNFMr' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'eeCNAwTXxbiVJjaT' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'kHDlJIqvSgMFpT' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE ? ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ? ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ? ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE ? ))' ---------------------- 2010-09-29 14:05:04.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: syntax error at or near ")" at character 1114 ---------------------- 2010-09-29 14:05:04.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-09-29 21:59:51.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-09-29 21:59:51.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA wjejfn@yljbau.com USA ydfyfcbzsdy USA 17356 USA wjejfn@yljbau.com ydfyfcbzsdy ydfyfcbzsdy
### ERROR LOG The Logging Results: ---------------------- 2010-09-29 19:59:51.000 Logging started. ---------------------- 2010-09-29 19:59:51.000 BioCASe protocol used. ---------------------- 2010-09-29 19:59:51.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-09-29 19:59:51.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-09-29 19:59:51.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-09-29 19:59:52.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-09-29 19:59:52.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-09-29 21:59:51.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n wjejfn@yljbau.com\n USA\n ydfyfcbzsdy\n USA\n 17356\n USA\n wjejfn@yljbau.com\n ydfyfcbzsdy\n ydfyfcbzsdy\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-09-29 21:59:51.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n wjejfn@yljbau.com\n USA\n ydfyfcbzsdy\n USA\n 17356\n USA\n wjejfn@yljbau.com\n ydfyfcbzsdy\n ydfyfcbzsdy\n\n\n\n \n
'} ---------------------- 2010-09-29 19:59:52.000 Found online debuglevel setting: 1 ---------------------- 2010-09-29 19:59:52.000 Setting debuglevel from 0 to 1 ---------------------- 2010-09-29 19:59:52.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-09-29 19:59:52.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-09-29 19:59:52.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-09-29 19:59:52.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-09-29 19:59:52.000 Pickled file is of latest revision. ---------------------- 2010-09-29 19:59:52.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-09-29 19:59:52.000 Original filter string parsed:
2.4.2 2010-09-29 21:59:51.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA wjejfn@yljbau.com USA ydfyfcbzsdy USA 17356 USA wjejfn@yljbau.com ydfyfcbzsdy ydfyfcbzsdy
---------------------- 2010-09-29 19:59:52.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = wjejfn@yljbau.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE ydfyfcbzsdy ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 17356 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = wjejfn@yljbau.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ydfyfcbzsdy ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE ydfyfcbzsdy )) ---------------------- 2010-09-29 19:59:52.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = wjejfn@yljbau.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE ydfyfcbzsdy ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 17356 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = wjejfn@yljbau.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ydfyfcbzsdy ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE ydfyfcbzsdy )) ---------------------- 2010-09-29 19:59:52.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = wjejfn@yljbau.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE ydfyfcbzsdy ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 17356 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = wjejfn@yljbau.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ydfyfcbzsdy ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE ydfyfcbzsdy )) ---------------------- 2010-09-29 19:59:52.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = wjejfn@yljbau.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE ydfyfcbzsdy ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 17356 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = wjejfn@yljbau.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ydfyfcbzsdy ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE ydfyfcbzsdy )) ---------------------- 2010-09-29 19:59:52.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-09-29 19:59:52.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'wjejfn@yljbau.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'ydfyfcbzsdy' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '17356' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'wjejfn@yljbau.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'ydfyfcbzsdy' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'ydfyfcbzsdy' ))' ---------------------- 2010-09-29 19:59:52.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "wjejfn@yljbau.com" ---------------------- 2010-09-29 19:59:52.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-09-29 22:06:15.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-09-29 22:06:15.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA Bobbs46@gmail.com USA order propecia USA 90621 USA Bobbs46@gmail.com order propecia order propecia
### ERROR LOG The Logging Results: ---------------------- 2010-09-29 20:06:15.000 Logging started. ---------------------- 2010-09-29 20:06:15.000 BioCASe protocol used. ---------------------- 2010-09-29 20:06:15.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-09-29 20:06:15.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-09-29 20:06:15.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-09-29 20:06:15.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-09-29 20:06:15.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-09-29 22:06:15.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n Bobbs46@gmail.com\n USA\n order propecia\n USA\n 90621\n USA\n Bobbs46@gmail.com\n order propecia\n order propecia\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-09-29 22:06:15.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n Bobbs46@gmail.com\n USA\n order propecia\n USA\n 90621\n USA\n Bobbs46@gmail.com\n order propecia\n order propecia\n\n\n\n \n
'} ---------------------- 2010-09-29 20:06:15.000 Found online debuglevel setting: 1 ---------------------- 2010-09-29 20:06:15.000 Setting debuglevel from 0 to 1 ---------------------- 2010-09-29 20:06:15.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-09-29 20:06:16.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-09-29 20:06:16.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-09-29 20:06:16.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-09-29 20:06:16.000 Pickled file is of latest revision. ---------------------- 2010-09-29 20:06:16.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-09-29 20:06:16.000 Original filter string parsed:
2.4.2 2010-09-29 22:06:15.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA Bobbs46@gmail.com USA order propecia USA 90621 USA Bobbs46@gmail.com order propecia order propecia
---------------------- 2010-09-29 20:06:16.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = Bobbs46@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE order propecia ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 90621 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = Bobbs46@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = order propecia ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE order propecia )) ---------------------- 2010-09-29 20:06:16.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = Bobbs46@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE order propecia ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 90621 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = Bobbs46@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = order propecia ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE order propecia )) ---------------------- 2010-09-29 20:06:16.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = Bobbs46@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE order propecia ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 90621 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = Bobbs46@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = order propecia ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE order propecia )) ---------------------- 2010-09-29 20:06:16.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = Bobbs46@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE order propecia ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 90621 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = Bobbs46@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = order propecia ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE order propecia )) ---------------------- 2010-09-29 20:06:16.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-09-29 20:06:16.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'Bobbs46@gmail.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'order propecia' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '90621' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'Bobbs46@gmail.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'order propecia' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'order propecia' ))' ---------------------- 2010-09-29 20:06:16.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "Bobbs46@gmail.com" ---------------------- 2010-09-29 20:06:16.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-09-30 14:06:53.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-09-30 14:06:53.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString NWuhljGIBK cpQPeKSB HzhGRtDVZmV bkyjbc YMbvVHJfLPI KLoBJaQTPXUfTaaBw HJTCrTmEdGZw rWzXOLNokZT uHiMyEQc bkyjbc
### ERROR LOG The Logging Results: ---------------------- 2010-09-30 12:06:53.000 Logging started. ---------------------- 2010-09-30 12:06:53.000 BioCASe protocol used. ---------------------- 2010-09-30 12:06:53.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-09-30 12:06:53.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-09-30 12:06:53.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-09-30 12:06:53.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-09-30 12:06:53.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-09-30 14:06:53.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n NWuhljGIBK\n cpQPeKSB\n HzhGRtDVZmV\n bkyjbc\n YMbvVHJfLPI\n KLoBJaQTPXUfTaaBw\n HJTCrTmEdGZw\n rWzXOLNokZT\n uHiMyEQc\n bkyjbc\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-09-30 14:06:53.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n NWuhljGIBK\n cpQPeKSB\n HzhGRtDVZmV\n bkyjbc\n YMbvVHJfLPI\n KLoBJaQTPXUfTaaBw\n HJTCrTmEdGZw\n rWzXOLNokZT\n uHiMyEQc\n bkyjbc\n\n\n\n \n
'} ---------------------- 2010-09-30 12:06:53.000 Found online debuglevel setting: 1 ---------------------- 2010-09-30 12:06:53.000 Setting debuglevel from 0 to 1 ---------------------- 2010-09-30 12:06:53.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-09-30 12:06:54.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-09-30 12:06:54.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-09-30 12:06:54.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-09-30 12:06:54.000 Pickled file is of latest revision. ---------------------- 2010-09-30 12:06:54.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-09-30 12:06:54.000 Original filter string parsed:
2.4.2 2010-09-30 14:06:53.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString NWuhljGIBK cpQPeKSB HzhGRtDVZmV bkyjbc YMbvVHJfLPI KLoBJaQTPXUfTaaBw HJTCrTmEdGZw rWzXOLNokZT uHiMyEQc bkyjbc
---------------------- 2010-09-30 12:06:54.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE NWuhljGIBK ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = cpQPeKSB ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE HzhGRtDVZmV ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE bkyjbc ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE YMbvVHJfLPI ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE KLoBJaQTPXUfTaaBw ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE HJTCrTmEdGZw ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = rWzXOLNokZT ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = uHiMyEQc ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE bkyjbc )) ---------------------- 2010-09-30 12:06:54.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE NWuhljGIBK ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = cpQPeKSB ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE HzhGRtDVZmV ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE bkyjbc ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE YMbvVHJfLPI ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE KLoBJaQTPXUfTaaBw ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE HJTCrTmEdGZw ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = rWzXOLNokZT ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = uHiMyEQc ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE bkyjbc )) ---------------------- 2010-09-30 12:06:54.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE NWuhljGIBK ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = cpQPeKSB ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE HzhGRtDVZmV ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE bkyjbc ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE YMbvVHJfLPI ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE KLoBJaQTPXUfTaaBw ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE HJTCrTmEdGZw ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = rWzXOLNokZT ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = uHiMyEQc ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE bkyjbc )) ---------------------- 2010-09-30 12:06:54.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE NWuhljGIBK ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = cpQPeKSB ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE HzhGRtDVZmV ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE bkyjbc ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE YMbvVHJfLPI ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE KLoBJaQTPXUfTaaBw ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE HJTCrTmEdGZw ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = rWzXOLNokZT ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = uHiMyEQc ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE bkyjbc )) ---------------------- 2010-09-30 12:06:54.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-09-30 12:06:54.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'NWuhljGIBK' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'cpQPeKSB' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'HzhGRtDVZmV' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'bkyjbc' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'YMbvVHJfLPI' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'KLoBJaQTPXUfTaaBw' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'HJTCrTmEdGZw' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'rWzXOLNokZT' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'uHiMyEQc' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'bkyjbc' ))' ---------------------- 2010-09-30 12:06:54.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "cpQPeKSB" ---------------------- 2010-09-30 12:06:54.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-10-01 01:30:42.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-10-01 00:58:06.54 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-09-30 23:30:42.000 Logging started. ---------------------- 2010-09-30 23:30:42.000 BioCASe protocol used. ---------------------- 2010-09-30 23:30:42.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-09-30 23:30:42.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-09-30 23:30:42.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-09-30 23:30:42.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-09-30 23:30:42.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-10-01 00:58:06.54\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-10-01 00:58:06.54\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-10-01 00:58:06.54\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-09-30 23:30:42.000 Found online debuglevel setting: 1 ---------------------- 2010-09-30 23:30:42.000 Setting debuglevel from 0 to 1 ---------------------- 2010-09-30 23:30:42.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-09-30 23:30:42.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-09-30 23:30:42.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-09-30 23:30:42.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-09-30 23:30:42.000 Pickled file is of latest revision. ---------------------- 2010-09-30 23:30:42.000 Original filter string parsed:
0.1 2010-10-01 00:58:06.54 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-09-30 23:30:42.000 Filter created: None ---------------------- 2010-09-30 23:30:42.000 Compressed filter used: None ---------------------- 2010-09-30 23:30:42.000 Counting total matched records with filter=None ---------------------- 2010-09-30 23:30:42.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-09-30 23:30:42.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-10-01 09:56:36.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-10-01 09:56:35.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString IscmuDXGRaJpZxkksgl wabrcq@cihusr.com SoyefCHZ nzzrvcaf USA 51173 9qg0A6 wabrcq@cihusr.com wabrcq@cihusr.com nzzrvcaf
### ERROR LOG The Logging Results: ---------------------- 2010-10-01 07:56:36.000 Logging started. ---------------------- 2010-10-01 07:56:36.000 BioCASe protocol used. ---------------------- 2010-10-01 07:56:36.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-10-01 07:56:36.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-10-01 07:56:36.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-10-01 07:56:36.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-10-01 07:56:36.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-10-01 09:56:35.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n IscmuDXGRaJpZxkksgl\n wabrcq@cihusr.com\n SoyefCHZ\n nzzrvcaf\n USA\n 51173\n 9qg0A6\n wabrcq@cihusr.com\n wabrcq@cihusr.com\n nzzrvcaf\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-10-01 09:56:35.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n IscmuDXGRaJpZxkksgl\n wabrcq@cihusr.com\n SoyefCHZ\n nzzrvcaf\n USA\n 51173\n 9qg0A6\n wabrcq@cihusr.com\n wabrcq@cihusr.com\n nzzrvcaf\n\n\n\n \n
'} ---------------------- 2010-10-01 07:56:36.000 Found online debuglevel setting: 1 ---------------------- 2010-10-01 07:56:36.000 Setting debuglevel from 0 to 1 ---------------------- 2010-10-01 07:56:36.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-10-01 07:56:36.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-10-01 07:56:36.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-10-01 07:56:36.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-10-01 07:56:37.000 Pickled file is of latest revision. ---------------------- 2010-10-01 07:56:37.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-10-01 07:56:37.000 Original filter string parsed:
2.4.2 2010-10-01 09:56:35.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString IscmuDXGRaJpZxkksgl wabrcq@cihusr.com SoyefCHZ nzzrvcaf USA 51173 9qg0A6 wabrcq@cihusr.com wabrcq@cihusr.com nzzrvcaf
---------------------- 2010-10-01 07:56:37.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE IscmuDXGRaJpZxkksgl ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = wabrcq@cihusr.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE SoyefCHZ ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE nzzrvcaf ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 51173 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 9qg0A6 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = wabrcq@cihusr.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = wabrcq@cihusr.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE nzzrvcaf )) ---------------------- 2010-10-01 07:56:37.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE IscmuDXGRaJpZxkksgl ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = wabrcq@cihusr.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE SoyefCHZ ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE nzzrvcaf ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 51173 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 9qg0A6 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = wabrcq@cihusr.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = wabrcq@cihusr.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE nzzrvcaf )) ---------------------- 2010-10-01 07:56:37.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE IscmuDXGRaJpZxkksgl ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = wabrcq@cihusr.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE SoyefCHZ ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE nzzrvcaf ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 51173 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 9qg0A6 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = wabrcq@cihusr.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = wabrcq@cihusr.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE nzzrvcaf )) ---------------------- 2010-10-01 07:56:37.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE IscmuDXGRaJpZxkksgl ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = wabrcq@cihusr.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE SoyefCHZ ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE nzzrvcaf ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 51173 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 9qg0A6 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = wabrcq@cihusr.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = wabrcq@cihusr.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE nzzrvcaf )) ---------------------- 2010-10-01 07:56:37.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-10-01 07:56:37.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'IscmuDXGRaJpZxkksgl' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'wabrcq@cihusr.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'SoyefCHZ' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'nzzrvcaf' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '51173' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE '9qg0A6' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'wabrcq@cihusr.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'wabrcq@cihusr.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'nzzrvcaf' ))' ---------------------- 2010-10-01 07:56:37.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "wabrcq@cihusr.com" ---------------------- 2010-10-01 07:56:37.000 Setting debuglevel from 1 to 3 **************************************** PONTAURUS **************************************** ### ERROR TIME 2010-10-02 04:13:57.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to pontaurus
2.4.2 2010-10-02 04:13:56.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString khfudgj BTNQbUSruxVsvbtXeBd oEYIKmRx epgGakkfjbBTbb OIeSccTjrwA
### ERROR LOG The Logging Results: ---------------------- 2010-10-02 02:13:57.000 Logging started. ---------------------- 2010-10-02 02:13:57.000 BioCASe protocol used. ---------------------- 2010-10-02 02:13:57.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['pontaurus']} ---------------------- 2010-10-02 02:13:57.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/pontaurus/provider_setup_file.xml ---------------------- 2010-10-02 02:13:57.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-10-02 02:13:57.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-10-02 02:13:57.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-10-02 04:13:56.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n khfudgj\n BTNQbUSruxVsvbtXeBd\n oEYIKmRx\n epgGakkfjbBTbb\n OIeSccTjrwA\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-10-02 04:13:56.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n khfudgj\n BTNQbUSruxVsvbtXeBd\n oEYIKmRx\n epgGakkfjbBTbb\n OIeSccTjrwA\n\n\n\n \n
'} ---------------------- 2010-10-02 02:13:57.000 Found online debuglevel setting: 1 ---------------------- 2010-10-02 02:13:57.000 Setting debuglevel from 0 to 1 ---------------------- 2010-10-02 02:13:57.000 The biocase.wrapper.dbmod.dbmod_mysql database module has been used. ---------------------- 2010-10-02 02:13:57.000 No DB connection could be established. Please verify DB state and connection parameters in your provider_setup_file.xml Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_mysql.py", line 55, in createDBconnection return MySQLdb.connect( host=self.psfObj.dbIP, db=self.psfObj.datasource, user=self.psfObj.user, passwd=self.psfObj.password ) File "/usr/lib/python2.4/site-packages/MySQLdb/__init__.py", line 66, in Connect return Connection(*args, **kwargs) File "/usr/lib/python2.4/site-packages/MySQLdb/connections.py", line 134, in __init__ super(Connection, self).__init__(*args, **kwargs2) OperationalError: (1045, "Access denied for user 'WebUser'@'localhost' (using password: NO)") ---------------------- 2010-10-02 02:13:57.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 75, in doRequest operationObj = getOperationsObjectForDBMod(self.psfObj, self.logObj, self.responseObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 354, in getOperationsObjectForDBMod operationsObj = operations(psfObj, logObj, removeCMFSubtreePaths, altRootTableAlias) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 68, in __init__ DBModuleClass.__init__(self, psfObj, logObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_mysql.py", line 37, in __init__ DBBasemodule.__init__(self, psfObj, logObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 43, in __init__ self.conn = self.createDBconnection() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_mysql.py", line 57, in createDBconnection raise ConnectionError(log=self.logObj) ConnectionError: ---------------------- 2010-10-02 02:13:57.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-10-02 15:48:15.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-10-02 15:48:14.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA jkdiwu@hgepzy.com USA bzbklzmjv USA 786719 USA jkdiwu@hgepzy.com bzbklzmjv bzbklzmjv
### ERROR LOG The Logging Results: ---------------------- 2010-10-02 13:48:15.000 Logging started. ---------------------- 2010-10-02 13:48:15.000 BioCASe protocol used. ---------------------- 2010-10-02 13:48:15.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-10-02 13:48:15.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-10-02 13:48:15.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-10-02 13:48:15.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-10-02 13:48:15.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-10-02 15:48:14.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n jkdiwu@hgepzy.com\n USA\n bzbklzmjv\n USA\n 786719\n USA\n jkdiwu@hgepzy.com\n bzbklzmjv\n bzbklzmjv\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-10-02 15:48:14.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n jkdiwu@hgepzy.com\n USA\n bzbklzmjv\n USA\n 786719\n USA\n jkdiwu@hgepzy.com\n bzbklzmjv\n bzbklzmjv\n\n\n\n \n
'} ---------------------- 2010-10-02 13:48:15.000 Found online debuglevel setting: 1 ---------------------- 2010-10-02 13:48:15.000 Setting debuglevel from 0 to 1 ---------------------- 2010-10-02 13:48:15.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-10-02 13:48:15.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-10-02 13:48:15.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-10-02 13:48:15.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-10-02 13:48:16.000 Pickled file is of latest revision. ---------------------- 2010-10-02 13:48:16.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-10-02 13:48:16.000 Original filter string parsed:
2.4.2 2010-10-02 15:48:14.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA jkdiwu@hgepzy.com USA bzbklzmjv USA 786719 USA jkdiwu@hgepzy.com bzbklzmjv bzbklzmjv
---------------------- 2010-10-02 13:48:16.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = jkdiwu@hgepzy.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE bzbklzmjv ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 786719 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = jkdiwu@hgepzy.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = bzbklzmjv ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE bzbklzmjv )) ---------------------- 2010-10-02 13:48:16.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = jkdiwu@hgepzy.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE bzbklzmjv ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 786719 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = jkdiwu@hgepzy.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = bzbklzmjv ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE bzbklzmjv )) ---------------------- 2010-10-02 13:48:16.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = jkdiwu@hgepzy.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE bzbklzmjv ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 786719 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = jkdiwu@hgepzy.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = bzbklzmjv ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE bzbklzmjv )) ---------------------- 2010-10-02 13:48:16.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = jkdiwu@hgepzy.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE bzbklzmjv ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 786719 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = jkdiwu@hgepzy.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = bzbklzmjv ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE bzbklzmjv )) ---------------------- 2010-10-02 13:48:16.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-10-02 13:48:16.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'jkdiwu@hgepzy.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'bzbklzmjv' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '786719' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'jkdiwu@hgepzy.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'bzbklzmjv' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'bzbklzmjv' ))' ---------------------- 2010-10-02 13:48:16.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "jkdiwu@hgepzy.com" ---------------------- 2010-10-02 13:48:16.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-10-03 08:17:33.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-10-03 08:17:32.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA jzzlqg@gkglvk.com USA xthalpqmr lifhcjnrt 1906 azOAl8 jzzlqg@gkglvk.com jzzlqg@gkglvk.com xthalpqmr
### ERROR LOG The Logging Results: ---------------------- 2010-10-03 06:17:33.000 Logging started. ---------------------- 2010-10-03 06:17:33.000 BioCASe protocol used. ---------------------- 2010-10-03 06:17:33.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-10-03 06:17:33.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-10-03 06:17:33.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-10-03 06:17:33.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-10-03 06:17:33.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-10-03 08:17:32.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n jzzlqg@gkglvk.com\n USA\n xthalpqmr\n lifhcjnrt\n 1906\n azOAl8\n jzzlqg@gkglvk.com\n jzzlqg@gkglvk.com\n xthalpqmr\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-10-03 08:17:32.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n jzzlqg@gkglvk.com\n USA\n xthalpqmr\n lifhcjnrt\n 1906\n azOAl8\n jzzlqg@gkglvk.com\n jzzlqg@gkglvk.com\n xthalpqmr\n\n\n\n \n
'} ---------------------- 2010-10-03 06:17:33.000 Found online debuglevel setting: 1 ---------------------- 2010-10-03 06:17:33.000 Setting debuglevel from 0 to 1 ---------------------- 2010-10-03 06:17:33.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-10-03 06:17:33.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-10-03 06:17:33.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-10-03 06:17:33.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-10-03 06:17:34.000 Pickled file is of latest revision. ---------------------- 2010-10-03 06:17:34.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-10-03 06:17:34.000 Original filter string parsed:
2.4.2 2010-10-03 08:17:32.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA jzzlqg@gkglvk.com USA xthalpqmr lifhcjnrt 1906 azOAl8 jzzlqg@gkglvk.com jzzlqg@gkglvk.com xthalpqmr
---------------------- 2010-10-03 06:17:34.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = jzzlqg@gkglvk.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE xthalpqmr ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE lifhcjnrt ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 1906 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE azOAl8 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = jzzlqg@gkglvk.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = jzzlqg@gkglvk.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE xthalpqmr )) ---------------------- 2010-10-03 06:17:34.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = jzzlqg@gkglvk.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE xthalpqmr ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE lifhcjnrt ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 1906 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE azOAl8 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = jzzlqg@gkglvk.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = jzzlqg@gkglvk.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE xthalpqmr )) ---------------------- 2010-10-03 06:17:34.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = jzzlqg@gkglvk.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE xthalpqmr ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE lifhcjnrt ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 1906 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE azOAl8 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = jzzlqg@gkglvk.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = jzzlqg@gkglvk.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE xthalpqmr )) ---------------------- 2010-10-03 06:17:34.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = jzzlqg@gkglvk.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE xthalpqmr ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE lifhcjnrt ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 1906 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE azOAl8 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = jzzlqg@gkglvk.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = jzzlqg@gkglvk.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE xthalpqmr )) ---------------------- 2010-10-03 06:17:34.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-10-03 06:17:34.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'jzzlqg@gkglvk.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'xthalpqmr' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'lifhcjnrt' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '1906' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'azOAl8' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'jzzlqg@gkglvk.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'jzzlqg@gkglvk.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'xthalpqmr' ))' ---------------------- 2010-10-03 06:17:34.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "jzzlqg@gkglvk.com" ---------------------- 2010-10-03 06:17:34.000 Setting debuglevel from 1 to 3 **************************************** PONTAURUS **************************************** ### ERROR TIME 2010-10-04 21:53:58.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to pontaurus
2.4.2 2010-10-04 21:53:57.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString jdbsjql apCUuOTUBngmUJ JjnVNomGzc WfASoDftNpYvxkeo xEGghfoGkT
### ERROR LOG The Logging Results: ---------------------- 2010-10-04 19:53:58.000 Logging started. ---------------------- 2010-10-04 19:53:58.000 BioCASe protocol used. ---------------------- 2010-10-04 19:53:58.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['pontaurus']} ---------------------- 2010-10-04 19:53:58.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/pontaurus/provider_setup_file.xml ---------------------- 2010-10-04 19:53:58.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-10-04 19:53:58.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-10-04 19:53:58.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-10-04 21:53:57.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n jdbsjql\n apCUuOTUBngmUJ\n JjnVNomGzc\n WfASoDftNpYvxkeo\n xEGghfoGkT\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-10-04 21:53:57.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n jdbsjql\n apCUuOTUBngmUJ\n JjnVNomGzc\n WfASoDftNpYvxkeo\n xEGghfoGkT\n\n\n\n \n
'} ---------------------- 2010-10-04 19:53:58.000 Found online debuglevel setting: 1 ---------------------- 2010-10-04 19:53:58.000 Setting debuglevel from 0 to 1 ---------------------- 2010-10-04 19:53:58.000 The biocase.wrapper.dbmod.dbmod_mysql database module has been used. ---------------------- 2010-10-04 19:53:58.000 No DB connection could be established. Please verify DB state and connection parameters in your provider_setup_file.xml Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_mysql.py", line 55, in createDBconnection return MySQLdb.connect( host=self.psfObj.dbIP, db=self.psfObj.datasource, user=self.psfObj.user, passwd=self.psfObj.password ) File "/usr/lib/python2.4/site-packages/MySQLdb/__init__.py", line 66, in Connect return Connection(*args, **kwargs) File "/usr/lib/python2.4/site-packages/MySQLdb/connections.py", line 134, in __init__ super(Connection, self).__init__(*args, **kwargs2) OperationalError: (1045, "Access denied for user 'WebUser'@'localhost' (using password: NO)") ---------------------- 2010-10-04 19:53:58.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 75, in doRequest operationObj = getOperationsObjectForDBMod(self.psfObj, self.logObj, self.responseObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 354, in getOperationsObjectForDBMod operationsObj = operations(psfObj, logObj, removeCMFSubtreePaths, altRootTableAlias) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 68, in __init__ DBModuleClass.__init__(self, psfObj, logObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_mysql.py", line 37, in __init__ DBBasemodule.__init__(self, psfObj, logObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 43, in __init__ self.conn = self.createDBconnection() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_mysql.py", line 57, in createDBconnection raise ConnectionError(log=self.logObj) ConnectionError: ---------------------- 2010-10-04 19:53:58.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2010-10-05 10:31:17.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2010-10-05 08:31:17.000 Logging started. ---------------------- 2010-10-05 08:31:17.000 BioCASe protocol used. ---------------------- 2010-10-05 08:31:17.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2010-10-05 08:31:17.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2010-10-05 08:31:17.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-10-05 08:31:17.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2010-10-05 08:31:17.000 Unknown request type! Default to capabilities. ---------------------- 2010-10-05 08:31:17.000 Destination hostname could not be determined ---------------------- 2010-10-05 08:31:17.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2010-10-05 08:31:17.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-10-05 08:31:17.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-10-05 08:31:17.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2010-10-05 08:31:17.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-10-05 08:31:18.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-10-05 08:31:18.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-10-05 10:31:26.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2010-10-05 08:31:26.000 Logging started. ---------------------- 2010-10-05 08:31:26.000 BioCASe protocol used. ---------------------- 2010-10-05 08:31:26.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-10-05 08:31:26.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-10-05 08:31:26.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-10-05 08:31:26.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2010-10-05 08:31:26.000 Unknown request type! Default to capabilities. ---------------------- 2010-10-05 08:31:26.000 Destination hostname could not be determined ---------------------- 2010-10-05 08:31:26.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2010-10-05 08:31:26.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2010-10-05 08:31:26.000 Reset CMF convenience cache data hash. ---------------------- 2010-10-05 08:31:26.000 Loading CMF from the source XML file. ---------------------- 2010-10-05 08:31:26.000 CMF Version 2.1 detected. ---------------------- 2010-10-05 08:31:27.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2010-10-05 08:31:27.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2010-10-05 08:31:27.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-10-05 08:31:27.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-10-05 08:31:27.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-10-05 08:31:27.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-10-05 08:31:27.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-10-05 08:31:27.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-10-05 11:17:57.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-10-05 11:17:56.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA atlvwm@wowdsh.com USA yfmdrzsni USA 822612 USA atlvwm@wowdsh.com yfmdrzsni yfmdrzsni
### ERROR LOG The Logging Results: ---------------------- 2010-10-05 09:17:57.000 Logging started. ---------------------- 2010-10-05 09:17:57.000 BioCASe protocol used. ---------------------- 2010-10-05 09:17:57.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-10-05 09:17:57.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-10-05 09:17:57.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-10-05 09:17:57.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-10-05 09:17:57.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-10-05 11:17:56.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n atlvwm@wowdsh.com\n USA\n yfmdrzsni\n USA\n 822612\n USA\n atlvwm@wowdsh.com\n yfmdrzsni\n yfmdrzsni\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-10-05 11:17:56.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n atlvwm@wowdsh.com\n USA\n yfmdrzsni\n USA\n 822612\n USA\n atlvwm@wowdsh.com\n yfmdrzsni\n yfmdrzsni\n\n\n\n \n
'} ---------------------- 2010-10-05 09:17:57.000 Found online debuglevel setting: 1 ---------------------- 2010-10-05 09:17:57.000 Setting debuglevel from 0 to 1 ---------------------- 2010-10-05 09:17:57.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-10-05 09:17:57.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-10-05 09:17:57.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-10-05 09:17:57.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-10-05 09:17:58.000 Pickled file is of latest revision. ---------------------- 2010-10-05 09:17:58.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-10-05 09:17:58.000 Original filter string parsed:
2.4.2 2010-10-05 11:17:56.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA atlvwm@wowdsh.com USA yfmdrzsni USA 822612 USA atlvwm@wowdsh.com yfmdrzsni yfmdrzsni
---------------------- 2010-10-05 09:17:58.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = atlvwm@wowdsh.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE yfmdrzsni ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 822612 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = atlvwm@wowdsh.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = yfmdrzsni ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE yfmdrzsni )) ---------------------- 2010-10-05 09:17:58.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = atlvwm@wowdsh.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE yfmdrzsni ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 822612 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = atlvwm@wowdsh.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = yfmdrzsni ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE yfmdrzsni )) ---------------------- 2010-10-05 09:17:58.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = atlvwm@wowdsh.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE yfmdrzsni ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 822612 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = atlvwm@wowdsh.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = yfmdrzsni ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE yfmdrzsni )) ---------------------- 2010-10-05 09:17:58.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = atlvwm@wowdsh.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE yfmdrzsni ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 822612 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = atlvwm@wowdsh.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = yfmdrzsni ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE yfmdrzsni )) ---------------------- 2010-10-05 09:17:58.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-10-05 09:17:58.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'atlvwm@wowdsh.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'yfmdrzsni' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '822612' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'atlvwm@wowdsh.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'yfmdrzsni' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'yfmdrzsni' ))' ---------------------- 2010-10-05 09:17:58.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "atlvwm@wowdsh.com" ---------------------- 2010-10-05 09:17:58.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-10-05 11:18:43.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-10-05 11:18:42.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA atlvwm@wowdsh.com USA yfmdrzsni USA 822612 USA atlvwm@wowdsh.com yfmdrzsni yfmdrzsni
### ERROR LOG The Logging Results: ---------------------- 2010-10-05 09:18:43.000 Logging started. ---------------------- 2010-10-05 09:18:43.000 BioCASe protocol used. ---------------------- 2010-10-05 09:18:43.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-10-05 09:18:43.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-10-05 09:18:43.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-10-05 09:18:43.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-10-05 09:18:43.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-10-05 11:18:42.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n atlvwm@wowdsh.com\n USA\n yfmdrzsni\n USA\n 822612\n USA\n atlvwm@wowdsh.com\n yfmdrzsni\n yfmdrzsni\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-10-05 11:18:42.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n atlvwm@wowdsh.com\n USA\n yfmdrzsni\n USA\n 822612\n USA\n atlvwm@wowdsh.com\n yfmdrzsni\n yfmdrzsni\n\n\n\n \n
'} ---------------------- 2010-10-05 09:18:43.000 Found online debuglevel setting: 1 ---------------------- 2010-10-05 09:18:43.000 Setting debuglevel from 0 to 1 ---------------------- 2010-10-05 09:18:43.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-10-05 09:18:43.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-10-05 09:18:43.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-10-05 09:18:43.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-10-05 09:18:44.000 Pickled file is of latest revision. ---------------------- 2010-10-05 09:18:44.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-10-05 09:18:44.000 Original filter string parsed:
2.4.2 2010-10-05 11:18:42.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA atlvwm@wowdsh.com USA yfmdrzsni USA 822612 USA atlvwm@wowdsh.com yfmdrzsni yfmdrzsni
---------------------- 2010-10-05 09:18:44.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = atlvwm@wowdsh.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE yfmdrzsni ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 822612 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = atlvwm@wowdsh.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = yfmdrzsni ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE yfmdrzsni )) ---------------------- 2010-10-05 09:18:44.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = atlvwm@wowdsh.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE yfmdrzsni ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 822612 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = atlvwm@wowdsh.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = yfmdrzsni ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE yfmdrzsni )) ---------------------- 2010-10-05 09:18:44.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = atlvwm@wowdsh.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE yfmdrzsni ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 822612 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = atlvwm@wowdsh.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = yfmdrzsni ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE yfmdrzsni )) ---------------------- 2010-10-05 09:18:44.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = atlvwm@wowdsh.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE yfmdrzsni ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 822612 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = atlvwm@wowdsh.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = yfmdrzsni ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE yfmdrzsni )) ---------------------- 2010-10-05 09:18:44.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-10-05 09:18:44.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'atlvwm@wowdsh.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'yfmdrzsni' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '822612' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'atlvwm@wowdsh.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'yfmdrzsni' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'yfmdrzsni' ))' ---------------------- 2010-10-05 09:18:44.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "atlvwm@wowdsh.com" ---------------------- 2010-10-05 09:18:44.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2010-10-05 14:06:19.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2010-10-05 12:06:19.000 Logging started. ---------------------- 2010-10-05 12:06:19.000 BioCASe protocol used. ---------------------- 2010-10-05 12:06:19.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2010-10-05 12:06:19.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2010-10-05 12:06:19.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-10-05 12:06:19.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2010-10-05 12:06:19.000 Unknown request type! Default to capabilities. ---------------------- 2010-10-05 12:06:19.000 Destination hostname could not be determined ---------------------- 2010-10-05 12:06:19.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2010-10-05 12:06:19.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-10-05 12:06:19.000 Pickled file is of latest revision. ---------------------- 2010-10-05 12:06:19.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2010-10-05 12:06:19.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2010-10-05 12:06:19.000 Reset CMF convenience cache data hash. ---------------------- 2010-10-05 12:06:19.000 Loading CMF from the source XML file. ---------------------- 2010-10-05 12:06:19.000 CMF Version 2.1 detected. ---------------------- 2010-10-05 12:06:19.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2010-10-05 12:06:19.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2010-10-05 12:06:19.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-10-05 12:06:19.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-10-05 12:06:19.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-10-05 16:26:03.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-10-05 16:26:02.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA utnelu@wcaupa.com USA uhpzjaoedjm USA 4959 USA utnelu@wcaupa.com uhpzjaoedjm uhpzjaoedjm
### ERROR LOG The Logging Results: ---------------------- 2010-10-05 14:26:03.000 Logging started. ---------------------- 2010-10-05 14:26:03.000 BioCASe protocol used. ---------------------- 2010-10-05 14:26:03.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-10-05 14:26:03.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-10-05 14:26:03.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-10-05 14:26:03.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-10-05 14:26:03.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-10-05 16:26:02.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n utnelu@wcaupa.com\n USA\n uhpzjaoedjm\n USA\n 4959\n USA\n utnelu@wcaupa.com\n uhpzjaoedjm\n uhpzjaoedjm\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-10-05 16:26:02.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n utnelu@wcaupa.com\n USA\n uhpzjaoedjm\n USA\n 4959\n USA\n utnelu@wcaupa.com\n uhpzjaoedjm\n uhpzjaoedjm\n\n\n\n \n
'} ---------------------- 2010-10-05 14:26:03.000 Found online debuglevel setting: 1 ---------------------- 2010-10-05 14:26:03.000 Setting debuglevel from 0 to 1 ---------------------- 2010-10-05 14:26:03.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-10-05 14:26:03.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-10-05 14:26:03.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-10-05 14:26:03.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-10-05 14:26:04.000 Pickled file is of latest revision. ---------------------- 2010-10-05 14:26:04.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-10-05 14:26:04.000 Original filter string parsed:
2.4.2 2010-10-05 16:26:02.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA utnelu@wcaupa.com USA uhpzjaoedjm USA 4959 USA utnelu@wcaupa.com uhpzjaoedjm uhpzjaoedjm
---------------------- 2010-10-05 14:26:04.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = utnelu@wcaupa.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE uhpzjaoedjm ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 4959 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = utnelu@wcaupa.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = uhpzjaoedjm ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE uhpzjaoedjm )) ---------------------- 2010-10-05 14:26:04.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = utnelu@wcaupa.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE uhpzjaoedjm ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 4959 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = utnelu@wcaupa.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = uhpzjaoedjm ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE uhpzjaoedjm )) ---------------------- 2010-10-05 14:26:04.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = utnelu@wcaupa.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE uhpzjaoedjm ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 4959 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = utnelu@wcaupa.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = uhpzjaoedjm ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE uhpzjaoedjm )) ---------------------- 2010-10-05 14:26:04.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = utnelu@wcaupa.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE uhpzjaoedjm ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 4959 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = utnelu@wcaupa.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = uhpzjaoedjm ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE uhpzjaoedjm )) ---------------------- 2010-10-05 14:26:04.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-10-05 14:26:04.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'utnelu@wcaupa.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'uhpzjaoedjm' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '4959' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'utnelu@wcaupa.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'uhpzjaoedjm' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'uhpzjaoedjm' ))' ---------------------- 2010-10-05 14:26:04.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "utnelu@wcaupa.com" ---------------------- 2010-10-05 14:26:04.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-10-08 01:33:44.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-10-08 01:01:30.86 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-10-07 23:33:44.000 Logging started. ---------------------- 2010-10-07 23:33:44.000 BioCASe protocol used. ---------------------- 2010-10-07 23:33:44.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-10-07 23:33:44.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-10-07 23:33:44.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-10-07 23:33:44.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-10-07 23:33:44.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-10-08 01:01:30.86\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-10-08 01:01:30.86\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-10-08 01:01:30.86\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-10-07 23:33:44.000 Found online debuglevel setting: 1 ---------------------- 2010-10-07 23:33:44.000 Setting debuglevel from 0 to 1 ---------------------- 2010-10-07 23:33:44.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-10-07 23:33:44.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-10-07 23:33:44.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-10-07 23:33:44.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-10-07 23:33:44.000 Pickled file is of latest revision. ---------------------- 2010-10-07 23:33:44.000 Original filter string parsed:
0.1 2010-10-08 01:01:30.86 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-10-07 23:33:44.000 Filter created: None ---------------------- 2010-10-07 23:33:44.000 Compressed filter used: None ---------------------- 2010-10-07 23:33:44.000 Counting total matched records with filter=None ---------------------- 2010-10-07 23:33:44.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-10-07 23:33:44.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-10-08 04:06:14.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-10-08 04:06:13.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString ukWTIHTvM yuvbavJsx qCARApjFFUzMPwqx qxdvtm pSMWEaTzKbkHRDYXDAy zFRdIvPnRaouygBN IuVOHKmkYKyMyhJWL ErFvwtYLGnVREm tKHaGQArIV qxdvtm
### ERROR LOG The Logging Results: ---------------------- 2010-10-08 02:06:14.000 Logging started. ---------------------- 2010-10-08 02:06:14.000 BioCASe protocol used. ---------------------- 2010-10-08 02:06:14.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-10-08 02:06:14.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-10-08 02:06:14.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-10-08 02:06:14.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-10-08 02:06:14.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-10-08 04:06:13.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n ukWTIHTvM\n yuvbavJsx\n qCARApjFFUzMPwqx\n qxdvtm\n pSMWEaTzKbkHRDYXDAy\n zFRdIvPnRaouygBN\n IuVOHKmkYKyMyhJWL\n ErFvwtYLGnVREm\n tKHaGQArIV\n qxdvtm\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-10-08 04:06:13.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n ukWTIHTvM\n yuvbavJsx\n qCARApjFFUzMPwqx\n qxdvtm\n pSMWEaTzKbkHRDYXDAy\n zFRdIvPnRaouygBN\n IuVOHKmkYKyMyhJWL\n ErFvwtYLGnVREm\n tKHaGQArIV\n qxdvtm\n\n\n\n \n
'} ---------------------- 2010-10-08 02:06:14.000 Found online debuglevel setting: 1 ---------------------- 2010-10-08 02:06:14.000 Setting debuglevel from 0 to 1 ---------------------- 2010-10-08 02:06:14.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-10-08 02:06:15.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-10-08 02:06:15.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-10-08 02:06:15.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-10-08 02:06:15.000 Pickled file is of latest revision. ---------------------- 2010-10-08 02:06:15.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-10-08 02:06:15.000 Original filter string parsed:
2.4.2 2010-10-08 04:06:13.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString ukWTIHTvM yuvbavJsx qCARApjFFUzMPwqx qxdvtm pSMWEaTzKbkHRDYXDAy zFRdIvPnRaouygBN IuVOHKmkYKyMyhJWL ErFvwtYLGnVREm tKHaGQArIV qxdvtm
---------------------- 2010-10-08 02:06:15.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE ukWTIHTvM ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = yuvbavJsx ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE qCARApjFFUzMPwqx ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE qxdvtm ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE pSMWEaTzKbkHRDYXDAy ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE zFRdIvPnRaouygBN ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE IuVOHKmkYKyMyhJWL ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ErFvwtYLGnVREm ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = tKHaGQArIV ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE qxdvtm )) ---------------------- 2010-10-08 02:06:15.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE ukWTIHTvM ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = yuvbavJsx ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE qCARApjFFUzMPwqx ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE qxdvtm ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE pSMWEaTzKbkHRDYXDAy ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE zFRdIvPnRaouygBN ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE IuVOHKmkYKyMyhJWL ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ErFvwtYLGnVREm ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = tKHaGQArIV ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE qxdvtm )) ---------------------- 2010-10-08 02:06:15.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE ukWTIHTvM ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = yuvbavJsx ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE qCARApjFFUzMPwqx ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE qxdvtm ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE pSMWEaTzKbkHRDYXDAy ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE zFRdIvPnRaouygBN ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE IuVOHKmkYKyMyhJWL ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ErFvwtYLGnVREm ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = tKHaGQArIV ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE qxdvtm )) ---------------------- 2010-10-08 02:06:15.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE ukWTIHTvM ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = yuvbavJsx ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE qCARApjFFUzMPwqx ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE qxdvtm ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE pSMWEaTzKbkHRDYXDAy ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE zFRdIvPnRaouygBN ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE IuVOHKmkYKyMyhJWL ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ErFvwtYLGnVREm ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = tKHaGQArIV ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE qxdvtm )) ---------------------- 2010-10-08 02:06:15.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-10-08 02:06:15.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'ukWTIHTvM' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'yuvbavJsx' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'qCARApjFFUzMPwqx' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'qxdvtm' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'pSMWEaTzKbkHRDYXDAy' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'zFRdIvPnRaouygBN' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'IuVOHKmkYKyMyhJWL' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'ErFvwtYLGnVREm' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'tKHaGQArIV' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'qxdvtm' ))' ---------------------- 2010-10-08 02:06:15.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "yuvbavJsx" ---------------------- 2010-10-08 02:06:15.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-10-08 23:22:57.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-10-08 23:22:57.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString rBzqGLfO mUsaTGFKxDHeJH yeySqHzeMzssbIKtT fircpdbccg DwSCpgBYlR fdIDlZMwMFwvyvxyu oPzegxNVMtsnsdHmJRw bJJhWqnokWJOb YXuuYqwNDcptCIVl fircpdbccg
### ERROR LOG The Logging Results: ---------------------- 2010-10-08 21:22:57.000 Logging started. ---------------------- 2010-10-08 21:22:57.000 BioCASe protocol used. ---------------------- 2010-10-08 21:22:57.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-10-08 21:22:57.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-10-08 21:22:57.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-10-08 21:22:57.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-10-08 21:22:57.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-10-08 23:22:57.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n rBzqGLfO\n mUsaTGFKxDHeJH\n yeySqHzeMzssbIKtT\n fircpdbccg\n DwSCpgBYlR\n fdIDlZMwMFwvyvxyu\n oPzegxNVMtsnsdHmJRw\n bJJhWqnokWJOb\n YXuuYqwNDcptCIVl\n fircpdbccg\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-10-08 23:22:57.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n rBzqGLfO\n mUsaTGFKxDHeJH\n yeySqHzeMzssbIKtT\n fircpdbccg\n DwSCpgBYlR\n fdIDlZMwMFwvyvxyu\n oPzegxNVMtsnsdHmJRw\n bJJhWqnokWJOb\n YXuuYqwNDcptCIVl\n fircpdbccg\n\n\n\n \n
'} ---------------------- 2010-10-08 21:22:57.000 Found online debuglevel setting: 1 ---------------------- 2010-10-08 21:22:57.000 Setting debuglevel from 0 to 1 ---------------------- 2010-10-08 21:22:57.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-10-08 21:22:57.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-10-08 21:22:57.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-10-08 21:22:57.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-10-08 21:22:58.000 Pickled file is of latest revision. ---------------------- 2010-10-08 21:22:58.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-10-08 21:22:58.000 Original filter string parsed:
2.4.2 2010-10-08 23:22:57.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString rBzqGLfO mUsaTGFKxDHeJH yeySqHzeMzssbIKtT fircpdbccg DwSCpgBYlR fdIDlZMwMFwvyvxyu oPzegxNVMtsnsdHmJRw bJJhWqnokWJOb YXuuYqwNDcptCIVl fircpdbccg
---------------------- 2010-10-08 21:22:58.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE rBzqGLfO ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = mUsaTGFKxDHeJH ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE yeySqHzeMzssbIKtT ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE fircpdbccg ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE DwSCpgBYlR ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE fdIDlZMwMFwvyvxyu ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE oPzegxNVMtsnsdHmJRw ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = bJJhWqnokWJOb ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = YXuuYqwNDcptCIVl ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE fircpdbccg )) ---------------------- 2010-10-08 21:22:58.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE rBzqGLfO ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = mUsaTGFKxDHeJH ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE yeySqHzeMzssbIKtT ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE fircpdbccg ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE DwSCpgBYlR ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE fdIDlZMwMFwvyvxyu ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE oPzegxNVMtsnsdHmJRw ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = bJJhWqnokWJOb ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = YXuuYqwNDcptCIVl ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE fircpdbccg )) ---------------------- 2010-10-08 21:22:58.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE rBzqGLfO ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = mUsaTGFKxDHeJH ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE yeySqHzeMzssbIKtT ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE fircpdbccg ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE DwSCpgBYlR ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE fdIDlZMwMFwvyvxyu ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE oPzegxNVMtsnsdHmJRw ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = bJJhWqnokWJOb ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = YXuuYqwNDcptCIVl ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE fircpdbccg )) ---------------------- 2010-10-08 21:22:58.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE rBzqGLfO ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = mUsaTGFKxDHeJH ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE yeySqHzeMzssbIKtT ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE fircpdbccg ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE DwSCpgBYlR ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE fdIDlZMwMFwvyvxyu ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE oPzegxNVMtsnsdHmJRw ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = bJJhWqnokWJOb ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = YXuuYqwNDcptCIVl ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE fircpdbccg )) ---------------------- 2010-10-08 21:22:58.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-10-08 21:22:58.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'rBzqGLfO' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'mUsaTGFKxDHeJH' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'yeySqHzeMzssbIKtT' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'fircpdbccg' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'DwSCpgBYlR' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'fdIDlZMwMFwvyvxyu' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'oPzegxNVMtsnsdHmJRw' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'bJJhWqnokWJOb' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'YXuuYqwNDcptCIVl' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'fircpdbccg' ))' ---------------------- 2010-10-08 21:22:58.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "mUsaTGFKxDHeJH" ---------------------- 2010-10-08 21:22:58.000 Setting debuglevel from 1 to 3 **************************************** PONTAURUS **************************************** ### ERROR TIME 2010-10-10 15:32:51.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to pontaurus
2.4.2 2010-10-10 15:32:51.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString yukkjbpu USA USA 648403 ebmqhn
### ERROR LOG The Logging Results: ---------------------- 2010-10-10 13:32:51.000 Logging started. ---------------------- 2010-10-10 13:32:51.000 BioCASe protocol used. ---------------------- 2010-10-10 13:32:51.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['pontaurus']} ---------------------- 2010-10-10 13:32:51.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/pontaurus/provider_setup_file.xml ---------------------- 2010-10-10 13:32:51.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-10-10 13:32:51.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-10-10 13:32:51.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-10-10 15:32:51.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n yukkjbpu\n USA\n USA\n 648403\n ebmqhn\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-10-10 15:32:51.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n yukkjbpu\n USA\n USA\n 648403\n ebmqhn\n\n\n\n \n
'} ---------------------- 2010-10-10 13:32:51.000 Found online debuglevel setting: 1 ---------------------- 2010-10-10 13:32:51.000 Setting debuglevel from 0 to 1 ---------------------- 2010-10-10 13:32:51.000 The biocase.wrapper.dbmod.dbmod_mysql database module has been used. ---------------------- 2010-10-10 13:32:52.000 No DB connection could be established. Please verify DB state and connection parameters in your provider_setup_file.xml Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_mysql.py", line 55, in createDBconnection return MySQLdb.connect( host=self.psfObj.dbIP, db=self.psfObj.datasource, user=self.psfObj.user, passwd=self.psfObj.password ) File "/usr/lib/python2.4/site-packages/MySQLdb/__init__.py", line 66, in Connect return Connection(*args, **kwargs) File "/usr/lib/python2.4/site-packages/MySQLdb/connections.py", line 134, in __init__ super(Connection, self).__init__(*args, **kwargs2) OperationalError: (1045, "Access denied for user 'WebUser'@'localhost' (using password: NO)") ---------------------- 2010-10-10 13:32:52.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 75, in doRequest operationObj = getOperationsObjectForDBMod(self.psfObj, self.logObj, self.responseObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 354, in getOperationsObjectForDBMod operationsObj = operations(psfObj, logObj, removeCMFSubtreePaths, altRootTableAlias) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 68, in __init__ DBModuleClass.__init__(self, psfObj, logObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_mysql.py", line 37, in __init__ DBBasemodule.__init__(self, psfObj, logObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 43, in __init__ self.conn = self.createDBconnection() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_mysql.py", line 57, in createDBconnection raise ConnectionError(log=self.logObj) ConnectionError: ---------------------- 2010-10-10 13:32:52.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-10-11 11:53:51.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-10-11 11:53:50.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA pbwdia@myiyee.com USA gbuszddywn USA 46679 USA pbwdia@myiyee.com gbuszddywn gbuszddywn
### ERROR LOG The Logging Results: ---------------------- 2010-10-11 09:53:51.000 Logging started. ---------------------- 2010-10-11 09:53:51.000 BioCASe protocol used. ---------------------- 2010-10-11 09:53:51.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-10-11 09:53:51.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-10-11 09:53:51.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-10-11 09:53:51.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-10-11 09:53:51.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-10-11 11:53:50.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n pbwdia@myiyee.com\n USA\n gbuszddywn\n USA\n 46679\n USA\n pbwdia@myiyee.com\n gbuszddywn\n gbuszddywn\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-10-11 11:53:50.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n pbwdia@myiyee.com\n USA\n gbuszddywn\n USA\n 46679\n USA\n pbwdia@myiyee.com\n gbuszddywn\n gbuszddywn\n\n\n\n \n
'} ---------------------- 2010-10-11 09:53:51.000 Found online debuglevel setting: 1 ---------------------- 2010-10-11 09:53:51.000 Setting debuglevel from 0 to 1 ---------------------- 2010-10-11 09:53:51.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-10-11 09:53:52.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-10-11 09:53:52.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-10-11 09:53:52.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-10-11 09:53:52.000 Pickled file is of latest revision. ---------------------- 2010-10-11 09:53:52.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-10-11 09:53:52.000 Original filter string parsed:
2.4.2 2010-10-11 11:53:50.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA pbwdia@myiyee.com USA gbuszddywn USA 46679 USA pbwdia@myiyee.com gbuszddywn gbuszddywn
---------------------- 2010-10-11 09:53:52.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = pbwdia@myiyee.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE gbuszddywn ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 46679 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = pbwdia@myiyee.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = gbuszddywn ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE gbuszddywn )) ---------------------- 2010-10-11 09:53:52.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = pbwdia@myiyee.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE gbuszddywn ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 46679 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = pbwdia@myiyee.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = gbuszddywn ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE gbuszddywn )) ---------------------- 2010-10-11 09:53:52.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = pbwdia@myiyee.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE gbuszddywn ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 46679 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = pbwdia@myiyee.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = gbuszddywn ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE gbuszddywn )) ---------------------- 2010-10-11 09:53:52.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = pbwdia@myiyee.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE gbuszddywn ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 46679 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = pbwdia@myiyee.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = gbuszddywn ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE gbuszddywn )) ---------------------- 2010-10-11 09:53:52.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-10-11 09:53:52.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'pbwdia@myiyee.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'gbuszddywn' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '46679' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'pbwdia@myiyee.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'gbuszddywn' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'gbuszddywn' ))' ---------------------- 2010-10-11 09:53:52.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "pbwdia@myiyee.com" ---------------------- 2010-10-11 09:53:52.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-10-13 16:12:50.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-10-13 16:12:49.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString WbfnSSkpWRByuXaJ OinRdKLv vIPmQrIVkqN FQEGBAvHPGGnkJDKk bSsuVirjIggUlD EYrflPFjybvnrjfu hCZbQgEQYJQWrMcLZ DxaEUOnyehGL McegCIFuLPbYBCGJDY FnrQFoHJbgpgZEJl
### ERROR LOG The Logging Results: ---------------------- 2010-10-13 14:12:50.000 Logging started. ---------------------- 2010-10-13 14:12:50.000 BioCASe protocol used. ---------------------- 2010-10-13 14:12:50.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-10-13 14:12:50.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-10-13 14:12:50.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-10-13 14:12:50.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-10-13 14:12:50.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-10-13 16:12:49.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n WbfnSSkpWRByuXaJ\n OinRdKLv\n vIPmQrIVkqN\n FQEGBAvHPGGnkJDKk\n bSsuVirjIggUlD\n EYrflPFjybvnrjfu\n hCZbQgEQYJQWrMcLZ\n DxaEUOnyehGL\n McegCIFuLPbYBCGJDY\n FnrQFoHJbgpgZEJl\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-10-13 16:12:49.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n WbfnSSkpWRByuXaJ\n OinRdKLv\n vIPmQrIVkqN\n FQEGBAvHPGGnkJDKk\n bSsuVirjIggUlD\n EYrflPFjybvnrjfu\n hCZbQgEQYJQWrMcLZ\n DxaEUOnyehGL\n McegCIFuLPbYBCGJDY\n FnrQFoHJbgpgZEJl\n\n\n\n \n
'} ---------------------- 2010-10-13 14:12:50.000 Found online debuglevel setting: 1 ---------------------- 2010-10-13 14:12:50.000 Setting debuglevel from 0 to 1 ---------------------- 2010-10-13 14:12:50.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-10-13 14:12:50.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-10-13 14:12:50.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-10-13 14:12:50.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-10-13 14:12:51.000 Pickled file is of latest revision. ---------------------- 2010-10-13 14:12:51.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-10-13 14:12:51.000 Original filter string parsed:
2.4.2 2010-10-13 16:12:49.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString WbfnSSkpWRByuXaJ OinRdKLv vIPmQrIVkqN FQEGBAvHPGGnkJDKk bSsuVirjIggUlD EYrflPFjybvnrjfu hCZbQgEQYJQWrMcLZ DxaEUOnyehGL McegCIFuLPbYBCGJDY FnrQFoHJbgpgZEJl
---------------------- 2010-10-13 14:12:51.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE WbfnSSkpWRByuXaJ ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = OinRdKLv ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE vIPmQrIVkqN ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE FQEGBAvHPGGnkJDKk ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE bSsuVirjIggUlD ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE EYrflPFjybvnrjfu ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE hCZbQgEQYJQWrMcLZ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = DxaEUOnyehGL ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = McegCIFuLPbYBCGJDY ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE FnrQFoHJbgpgZEJl )) ---------------------- 2010-10-13 14:12:51.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE WbfnSSkpWRByuXaJ ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = OinRdKLv ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE vIPmQrIVkqN ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE FQEGBAvHPGGnkJDKk ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE bSsuVirjIggUlD ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE EYrflPFjybvnrjfu ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE hCZbQgEQYJQWrMcLZ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = DxaEUOnyehGL ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = McegCIFuLPbYBCGJDY ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE FnrQFoHJbgpgZEJl )) ---------------------- 2010-10-13 14:12:51.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE WbfnSSkpWRByuXaJ ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = OinRdKLv ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE vIPmQrIVkqN ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE FQEGBAvHPGGnkJDKk ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE bSsuVirjIggUlD ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE EYrflPFjybvnrjfu ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE hCZbQgEQYJQWrMcLZ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = DxaEUOnyehGL ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = McegCIFuLPbYBCGJDY ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE FnrQFoHJbgpgZEJl )) ---------------------- 2010-10-13 14:12:51.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE WbfnSSkpWRByuXaJ ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = OinRdKLv ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE vIPmQrIVkqN ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE FQEGBAvHPGGnkJDKk ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE bSsuVirjIggUlD ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE EYrflPFjybvnrjfu ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE hCZbQgEQYJQWrMcLZ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = DxaEUOnyehGL ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = McegCIFuLPbYBCGJDY ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE FnrQFoHJbgpgZEJl )) ---------------------- 2010-10-13 14:12:51.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-10-13 14:12:51.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'WbfnSSkpWRByuXaJ' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'OinRdKLv' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'vIPmQrIVkqN' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'FQEGBAvHPGGnkJDKk' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'bSsuVirjIggUlD' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'EYrflPFjybvnrjfu' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'hCZbQgEQYJQWrMcLZ' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'DxaEUOnyehGL' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'McegCIFuLPbYBCGJDY' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'FnrQFoHJbgpgZEJl' ))' ---------------------- 2010-10-13 14:12:51.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "OinRdKLv" ---------------------- 2010-10-13 14:12:51.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-10-14 13:24:05.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-10-14 13:24:04.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString mUjGMgtPTqNB yYGoyMzojFVZXN NvHZsAUSTLKFypB fssvqfqix ZYSDgxEwyALZLBVgzaj AfwVkMgPsHmZKFmT qdSqmBKMKR KbDkilkvAIVuWgs HlyaaiJSWuu fssvqfqix
### ERROR LOG The Logging Results: ---------------------- 2010-10-14 11:24:05.000 Logging started. ---------------------- 2010-10-14 11:24:05.000 BioCASe protocol used. ---------------------- 2010-10-14 11:24:05.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-10-14 11:24:05.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-10-14 11:24:05.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-10-14 11:24:05.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-10-14 11:24:05.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-10-14 13:24:04.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n mUjGMgtPTqNB\n yYGoyMzojFVZXN\n NvHZsAUSTLKFypB\n fssvqfqix\n ZYSDgxEwyALZLBVgzaj\n AfwVkMgPsHmZKFmT\n qdSqmBKMKR\n KbDkilkvAIVuWgs\n HlyaaiJSWuu\n fssvqfqix\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-10-14 13:24:04.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n mUjGMgtPTqNB\n yYGoyMzojFVZXN\n NvHZsAUSTLKFypB\n fssvqfqix\n ZYSDgxEwyALZLBVgzaj\n AfwVkMgPsHmZKFmT\n qdSqmBKMKR\n KbDkilkvAIVuWgs\n HlyaaiJSWuu\n fssvqfqix\n\n\n\n \n
'} ---------------------- 2010-10-14 11:24:05.000 Found online debuglevel setting: 1 ---------------------- 2010-10-14 11:24:05.000 Setting debuglevel from 0 to 1 ---------------------- 2010-10-14 11:24:05.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-10-14 11:24:05.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-10-14 11:24:05.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-10-14 11:24:05.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-10-14 11:24:06.000 Pickled file is of latest revision. ---------------------- 2010-10-14 11:24:06.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-10-14 11:24:06.000 Original filter string parsed:
2.4.2 2010-10-14 13:24:04.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString mUjGMgtPTqNB yYGoyMzojFVZXN NvHZsAUSTLKFypB fssvqfqix ZYSDgxEwyALZLBVgzaj AfwVkMgPsHmZKFmT qdSqmBKMKR KbDkilkvAIVuWgs HlyaaiJSWuu fssvqfqix
---------------------- 2010-10-14 11:24:06.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE mUjGMgtPTqNB ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = yYGoyMzojFVZXN ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE NvHZsAUSTLKFypB ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE fssvqfqix ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE ZYSDgxEwyALZLBVgzaj ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE AfwVkMgPsHmZKFmT ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE qdSqmBKMKR ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = KbDkilkvAIVuWgs ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = HlyaaiJSWuu ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE fssvqfqix )) ---------------------- 2010-10-14 11:24:06.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE mUjGMgtPTqNB ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = yYGoyMzojFVZXN ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE NvHZsAUSTLKFypB ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE fssvqfqix ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE ZYSDgxEwyALZLBVgzaj ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE AfwVkMgPsHmZKFmT ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE qdSqmBKMKR ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = KbDkilkvAIVuWgs ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = HlyaaiJSWuu ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE fssvqfqix )) ---------------------- 2010-10-14 11:24:06.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE mUjGMgtPTqNB ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = yYGoyMzojFVZXN ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE NvHZsAUSTLKFypB ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE fssvqfqix ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE ZYSDgxEwyALZLBVgzaj ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE AfwVkMgPsHmZKFmT ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE qdSqmBKMKR ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = KbDkilkvAIVuWgs ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = HlyaaiJSWuu ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE fssvqfqix )) ---------------------- 2010-10-14 11:24:06.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE mUjGMgtPTqNB ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = yYGoyMzojFVZXN ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE NvHZsAUSTLKFypB ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE fssvqfqix ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE ZYSDgxEwyALZLBVgzaj ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE AfwVkMgPsHmZKFmT ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE qdSqmBKMKR ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = KbDkilkvAIVuWgs ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = HlyaaiJSWuu ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE fssvqfqix )) ---------------------- 2010-10-14 11:24:06.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-10-14 11:24:06.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'mUjGMgtPTqNB' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'yYGoyMzojFVZXN' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'NvHZsAUSTLKFypB' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'fssvqfqix' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'ZYSDgxEwyALZLBVgzaj' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'AfwVkMgPsHmZKFmT' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'qdSqmBKMKR' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'KbDkilkvAIVuWgs' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'HlyaaiJSWuu' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'fssvqfqix' ))' ---------------------- 2010-10-14 11:24:06.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "yYGoyMzojFVZXN" ---------------------- 2010-10-14 11:24:06.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-10-15 01:32:59.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-10-15 01:01:08.05 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-10-14 23:32:59.000 Logging started. ---------------------- 2010-10-14 23:32:59.000 BioCASe protocol used. ---------------------- 2010-10-14 23:32:59.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-10-14 23:32:59.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-10-14 23:32:59.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-10-14 23:32:59.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-10-14 23:32:59.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-10-15 01:01:08.05\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-10-15 01:01:08.05\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-10-15 01:01:08.05\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-10-14 23:32:59.000 Found online debuglevel setting: 1 ---------------------- 2010-10-14 23:32:59.000 Setting debuglevel from 0 to 1 ---------------------- 2010-10-14 23:32:59.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-10-14 23:32:59.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-10-14 23:32:59.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-10-14 23:32:59.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-10-14 23:32:59.000 Pickled file is of latest revision. ---------------------- 2010-10-14 23:32:59.000 Original filter string parsed:
0.1 2010-10-15 01:01:08.05 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-10-14 23:32:59.000 Filter created: None ---------------------- 2010-10-14 23:32:59.000 Compressed filter used: None ---------------------- 2010-10-14 23:32:59.000 Counting total matched records with filter=None ---------------------- 2010-10-14 23:32:59.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-10-14 23:32:59.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2010-10-16 19:04:11.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2010-10-16 17:04:11.000 Logging started. ---------------------- 2010-10-16 17:04:11.000 BioCASe protocol used. ---------------------- 2010-10-16 17:04:11.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2010-10-16 17:04:11.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2010-10-16 17:04:11.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-10-16 17:04:11.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2010-10-16 17:04:11.000 Unknown request type! Default to capabilities. ---------------------- 2010-10-16 17:04:11.000 Destination hostname could not be determined ---------------------- 2010-10-16 17:04:11.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2010-10-16 17:04:11.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-10-16 17:04:11.000 Pickled file is of latest revision. ---------------------- 2010-10-16 17:04:11.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2010-10-16 17:04:11.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2010-10-16 17:04:11.000 Reset CMF convenience cache data hash. ---------------------- 2010-10-16 17:04:11.000 Loading CMF from the source XML file. ---------------------- 2010-10-16 17:04:11.000 CMF Version 2.1 detected. ---------------------- 2010-10-16 17:04:11.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2010-10-16 17:04:11.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2010-10-16 17:04:11.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-10-16 17:04:11.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-10-16 17:04:11.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2010-10-16 19:04:26.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2010-10-16 17:04:26.000 Logging started. ---------------------- 2010-10-16 17:04:26.000 BioCASe protocol used. ---------------------- 2010-10-16 17:04:26.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2010-10-16 17:04:26.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2010-10-16 17:04:26.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-10-16 17:04:26.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2010-10-16 17:04:26.000 Unknown request type! Default to capabilities. ---------------------- 2010-10-16 17:04:26.000 Destination hostname could not be determined ---------------------- 2010-10-16 17:04:26.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2010-10-16 17:04:26.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-10-16 17:04:26.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-10-16 17:04:26.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2010-10-16 17:04:26.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-10-16 17:04:26.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-10-16 17:04:26.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-10-16 19:04:41.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2010-10-16 17:04:41.000 Logging started. ---------------------- 2010-10-16 17:04:41.000 BioCASe protocol used. ---------------------- 2010-10-16 17:04:41.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-10-16 17:04:41.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-10-16 17:04:41.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-10-16 17:04:41.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2010-10-16 17:04:41.000 Unknown request type! Default to capabilities. ---------------------- 2010-10-16 17:04:41.000 Destination hostname could not be determined ---------------------- 2010-10-16 17:04:41.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2010-10-16 17:04:41.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2010-10-16 17:04:41.000 Reset CMF convenience cache data hash. ---------------------- 2010-10-16 17:04:41.000 Loading CMF from the source XML file. ---------------------- 2010-10-16 17:04:41.000 CMF Version 2.1 detected. ---------------------- 2010-10-16 17:04:42.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2010-10-16 17:04:42.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2010-10-16 17:04:42.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-10-16 17:04:42.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-10-16 17:04:42.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-10-16 17:04:42.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-10-16 17:04:42.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-10-16 17:04:42.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-10-17 01:05:07.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-10-17 01:05:07.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA ysabzn@gskwum.com USA hssaikl USA 57888 USA ysabzn@gskwum.com hssaikl hssaikl
### ERROR LOG The Logging Results: ---------------------- 2010-10-16 23:05:07.000 Logging started. ---------------------- 2010-10-16 23:05:07.000 BioCASe protocol used. ---------------------- 2010-10-16 23:05:07.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-10-16 23:05:07.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-10-16 23:05:07.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-10-16 23:05:07.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-10-16 23:05:07.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-10-17 01:05:07.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n ysabzn@gskwum.com\n USA\n hssaikl\n USA\n 57888\n USA\n ysabzn@gskwum.com\n hssaikl\n hssaikl\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-10-17 01:05:07.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n ysabzn@gskwum.com\n USA\n hssaikl\n USA\n 57888\n USA\n ysabzn@gskwum.com\n hssaikl\n hssaikl\n\n\n\n \n
'} ---------------------- 2010-10-16 23:05:07.000 Found online debuglevel setting: 1 ---------------------- 2010-10-16 23:05:07.000 Setting debuglevel from 0 to 1 ---------------------- 2010-10-16 23:05:07.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-10-16 23:05:08.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-10-16 23:05:08.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-10-16 23:05:08.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-10-16 23:05:08.000 Pickled file is of latest revision. ---------------------- 2010-10-16 23:05:08.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-10-16 23:05:08.000 Original filter string parsed:
2.4.2 2010-10-17 01:05:07.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA ysabzn@gskwum.com USA hssaikl USA 57888 USA ysabzn@gskwum.com hssaikl hssaikl
---------------------- 2010-10-16 23:05:08.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ysabzn@gskwum.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE hssaikl ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 57888 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ysabzn@gskwum.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = hssaikl ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE hssaikl )) ---------------------- 2010-10-16 23:05:08.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ysabzn@gskwum.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE hssaikl ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 57888 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ysabzn@gskwum.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = hssaikl ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE hssaikl )) ---------------------- 2010-10-16 23:05:08.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ysabzn@gskwum.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE hssaikl ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 57888 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ysabzn@gskwum.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = hssaikl ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE hssaikl )) ---------------------- 2010-10-16 23:05:08.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ysabzn@gskwum.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE hssaikl ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 57888 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ysabzn@gskwum.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = hssaikl ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE hssaikl )) ---------------------- 2010-10-16 23:05:08.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-10-16 23:05:08.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'ysabzn@gskwum.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'hssaikl' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '57888' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'ysabzn@gskwum.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'hssaikl' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'hssaikl' ))' ---------------------- 2010-10-16 23:05:08.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "ysabzn@gskwum.com" ---------------------- 2010-10-16 23:05:08.000 Setting debuglevel from 1 to 3 **************************************** ID| **************************************** ### ERROR TIME 2010-10-18 16:33:35.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to id| no request doc set. ### ERROR LOG The Logging Results: ---------------------- 2010-10-18 14:33:35.000 Logging started. ---------------------- 2010-10-18 14:33:35.000 BioCASe protocol used. ---------------------- 2010-10-18 14:33:35.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['id|']} ---------------------- 2010-10-18 14:33:35.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/id|/provider_setup_file.xml ---------------------- 2010-10-18 14:33:35.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-10-18 14:33:36.000 PRG_PSF_PARSING_ERROR: The Provider Configuration could not be parsed. Please check if "UNKNOWN" is accesible and a valid XML document. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 114, in readConfigFiles self.psfObj.readPSFile() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 104, in readPSFile parse(absFilename, handler) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/__init__.py", line 31, in parse parser.parse(filename_or_stream) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 103, in parse source = saxutils.prepare_input_source(source) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/saxutils.py", line 523, in prepare_input_source f = urllib2.urlopen(source.getSystemId()) File "/usr/lib/python2.4/urllib2.py", line 130, in urlopen return _opener.open(url, data) File "/usr/lib/python2.4/urllib2.py", line 350, in open protocol = req.get_type() File "/usr/lib/python2.4/urllib2.py", line 233, in get_type raise ValueError, "unknown url type: %s" % self.__original ValueError: unknown url type: /var/www/BiocaseProvider_2.4.2/configuration/datasources/id|/provider_setup_file.xml ---------------------- 2010-10-18 14:33:36.000 Serious PyWrapper instance crash Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/www/pywrapper.cgi", line 49, in ? pywInstance.readConfigFiles( PSFPath=PSFPath, logDir=logDir) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 118, in readConfigFiles raise ProviderSetupParseError("UNKNOWN", self.logObj) ProviderSetupParseError: ---------------------- 2010-10-18 14:33:36.000 PyWrapper instance is missing its configurations! ---------------------- 2010-10-18 14:33:36.000 Setting debuglevel from 0 to 3 **************************************** |ID| **************************************** ### ERROR TIME 2010-10-18 16:33:36.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to |id| no request doc set. ### ERROR LOG The Logging Results: ---------------------- 2010-10-18 14:33:36.000 Logging started. ---------------------- 2010-10-18 14:33:36.000 BioCASe protocol used. ---------------------- 2010-10-18 14:33:36.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['|id|']} ---------------------- 2010-10-18 14:33:36.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/|id|/provider_setup_file.xml ---------------------- 2010-10-18 14:33:36.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-10-18 14:33:36.000 PRG_PSF_PARSING_ERROR: The Provider Configuration could not be parsed. Please check if "UNKNOWN" is accesible and a valid XML document. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 114, in readConfigFiles self.psfObj.readPSFile() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 104, in readPSFile parse(absFilename, handler) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/__init__.py", line 31, in parse parser.parse(filename_or_stream) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 103, in parse source = saxutils.prepare_input_source(source) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/saxutils.py", line 523, in prepare_input_source f = urllib2.urlopen(source.getSystemId()) File "/usr/lib/python2.4/urllib2.py", line 130, in urlopen return _opener.open(url, data) File "/usr/lib/python2.4/urllib2.py", line 350, in open protocol = req.get_type() File "/usr/lib/python2.4/urllib2.py", line 233, in get_type raise ValueError, "unknown url type: %s" % self.__original ValueError: unknown url type: /var/www/BiocaseProvider_2.4.2/configuration/datasources/|id|/provider_setup_file.xml ---------------------- 2010-10-18 14:33:36.000 Serious PyWrapper instance crash Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/www/pywrapper.cgi", line 49, in ? pywInstance.readConfigFiles( PSFPath=PSFPath, logDir=logDir) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 118, in readConfigFiles raise ProviderSetupParseError("UNKNOWN", self.logObj) ProviderSetupParseError: ---------------------- 2010-10-18 14:33:36.000 PyWrapper instance is missing its configurations! ---------------------- 2010-10-18 14:33:36.000 Setting debuglevel from 0 to 3 **************************************** ID| **************************************** ### ERROR TIME 2010-10-18 21:28:26.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to id| no request doc set. ### ERROR LOG The Logging Results: ---------------------- 2010-10-18 19:28:26.000 Logging started. ---------------------- 2010-10-18 19:28:27.000 BioCASe protocol used. ---------------------- 2010-10-18 19:28:27.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['id|']} ---------------------- 2010-10-18 19:28:27.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/id|/provider_setup_file.xml ---------------------- 2010-10-18 19:28:27.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-10-18 19:28:27.000 PRG_PSF_PARSING_ERROR: The Provider Configuration could not be parsed. Please check if "UNKNOWN" is accesible and a valid XML document. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 114, in readConfigFiles self.psfObj.readPSFile() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 104, in readPSFile parse(absFilename, handler) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/__init__.py", line 31, in parse parser.parse(filename_or_stream) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 103, in parse source = saxutils.prepare_input_source(source) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/saxutils.py", line 523, in prepare_input_source f = urllib2.urlopen(source.getSystemId()) File "/usr/lib/python2.4/urllib2.py", line 130, in urlopen return _opener.open(url, data) File "/usr/lib/python2.4/urllib2.py", line 350, in open protocol = req.get_type() File "/usr/lib/python2.4/urllib2.py", line 233, in get_type raise ValueError, "unknown url type: %s" % self.__original ValueError: unknown url type: /var/www/BiocaseProvider_2.4.2/configuration/datasources/id|/provider_setup_file.xml ---------------------- 2010-10-18 19:28:27.000 Serious PyWrapper instance crash Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/www/pywrapper.cgi", line 49, in ? pywInstance.readConfigFiles( PSFPath=PSFPath, logDir=logDir) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 118, in readConfigFiles raise ProviderSetupParseError("UNKNOWN", self.logObj) ProviderSetupParseError: ---------------------- 2010-10-18 19:28:27.000 PyWrapper instance is missing its configurations! ---------------------- 2010-10-18 19:28:27.000 Setting debuglevel from 0 to 3 **************************************** |ID| **************************************** ### ERROR TIME 2010-10-18 21:28:27.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to |id| no request doc set. ### ERROR LOG The Logging Results: ---------------------- 2010-10-18 19:28:27.000 Logging started. ---------------------- 2010-10-18 19:28:27.000 BioCASe protocol used. ---------------------- 2010-10-18 19:28:27.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['|id|']} ---------------------- 2010-10-18 19:28:27.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/|id|/provider_setup_file.xml ---------------------- 2010-10-18 19:28:27.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-10-18 19:28:27.000 PRG_PSF_PARSING_ERROR: The Provider Configuration could not be parsed. Please check if "UNKNOWN" is accesible and a valid XML document. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 114, in readConfigFiles self.psfObj.readPSFile() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 104, in readPSFile parse(absFilename, handler) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/__init__.py", line 31, in parse parser.parse(filename_or_stream) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 103, in parse source = saxutils.prepare_input_source(source) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/saxutils.py", line 523, in prepare_input_source f = urllib2.urlopen(source.getSystemId()) File "/usr/lib/python2.4/urllib2.py", line 130, in urlopen return _opener.open(url, data) File "/usr/lib/python2.4/urllib2.py", line 350, in open protocol = req.get_type() File "/usr/lib/python2.4/urllib2.py", line 233, in get_type raise ValueError, "unknown url type: %s" % self.__original ValueError: unknown url type: /var/www/BiocaseProvider_2.4.2/configuration/datasources/|id|/provider_setup_file.xml ---------------------- 2010-10-18 19:28:27.000 Serious PyWrapper instance crash Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/www/pywrapper.cgi", line 49, in ? pywInstance.readConfigFiles( PSFPath=PSFPath, logDir=logDir) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 118, in readConfigFiles raise ProviderSetupParseError("UNKNOWN", self.logObj) ProviderSetupParseError: ---------------------- 2010-10-18 19:28:27.000 PyWrapper instance is missing its configurations! ---------------------- 2010-10-18 19:28:27.000 Setting debuglevel from 0 to 3 **************************************** PONTAURUS **************************************** ### ERROR TIME 2010-10-20 00:37:43.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to pontaurus
2.4.2 2010-10-20 00:37:43.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString izwxyr USA USA 5035 peoyy
### ERROR LOG The Logging Results: ---------------------- 2010-10-19 22:37:43.000 Logging started. ---------------------- 2010-10-19 22:37:43.000 BioCASe protocol used. ---------------------- 2010-10-19 22:37:43.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['pontaurus']} ---------------------- 2010-10-19 22:37:43.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/pontaurus/provider_setup_file.xml ---------------------- 2010-10-19 22:37:43.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-10-19 22:37:43.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-10-19 22:37:43.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-10-20 00:37:43.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n izwxyr\n USA\n USA\n 5035\n peoyy\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-10-20 00:37:43.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n izwxyr\n USA\n USA\n 5035\n peoyy\n\n\n\n \n
'} ---------------------- 2010-10-19 22:37:43.000 Found online debuglevel setting: 1 ---------------------- 2010-10-19 22:37:43.000 Setting debuglevel from 0 to 1 ---------------------- 2010-10-19 22:37:43.000 The biocase.wrapper.dbmod.dbmod_mysql database module has been used. ---------------------- 2010-10-19 22:37:44.000 No DB connection could be established. Please verify DB state and connection parameters in your provider_setup_file.xml Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_mysql.py", line 55, in createDBconnection return MySQLdb.connect( host=self.psfObj.dbIP, db=self.psfObj.datasource, user=self.psfObj.user, passwd=self.psfObj.password ) File "/usr/lib/python2.4/site-packages/MySQLdb/__init__.py", line 66, in Connect return Connection(*args, **kwargs) File "/usr/lib/python2.4/site-packages/MySQLdb/connections.py", line 134, in __init__ super(Connection, self).__init__(*args, **kwargs2) OperationalError: (1045, "Access denied for user 'WebUser'@'localhost' (using password: NO)") ---------------------- 2010-10-19 22:37:44.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 75, in doRequest operationObj = getOperationsObjectForDBMod(self.psfObj, self.logObj, self.responseObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 354, in getOperationsObjectForDBMod operationsObj = operations(psfObj, logObj, removeCMFSubtreePaths, altRootTableAlias) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 68, in __init__ DBModuleClass.__init__(self, psfObj, logObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_mysql.py", line 37, in __init__ DBBasemodule.__init__(self, psfObj, logObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 43, in __init__ self.conn = self.createDBconnection() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_mysql.py", line 57, in createDBconnection raise ConnectionError(log=self.logObj) ConnectionError: ---------------------- 2010-10-19 22:37:44.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-10-21 01:37:13.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-10-21 01:37:13.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA voguxz@mvqpwz.com USA pcmfiixzaf USA 88835 USA voguxz@mvqpwz.com pcmfiixzaf pcmfiixzaf
### ERROR LOG The Logging Results: ---------------------- 2010-10-20 23:37:13.000 Logging started. ---------------------- 2010-10-20 23:37:13.000 BioCASe protocol used. ---------------------- 2010-10-20 23:37:13.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-10-20 23:37:14.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-10-20 23:37:14.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-10-20 23:37:14.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-10-20 23:37:14.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-10-21 01:37:13.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n voguxz@mvqpwz.com\n USA\n pcmfiixzaf\n USA\n 88835\n USA\n voguxz@mvqpwz.com\n pcmfiixzaf\n pcmfiixzaf\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-10-21 01:37:13.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n voguxz@mvqpwz.com\n USA\n pcmfiixzaf\n USA\n 88835\n USA\n voguxz@mvqpwz.com\n pcmfiixzaf\n pcmfiixzaf\n\n\n\n \n
'} ---------------------- 2010-10-20 23:37:14.000 Found online debuglevel setting: 1 ---------------------- 2010-10-20 23:37:14.000 Setting debuglevel from 0 to 1 ---------------------- 2010-10-20 23:37:14.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-10-20 23:37:14.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-10-20 23:37:14.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-10-20 23:37:14.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-10-20 23:37:14.000 Pickled file is of latest revision. ---------------------- 2010-10-20 23:37:14.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-10-20 23:37:14.000 Original filter string parsed:
2.4.2 2010-10-21 01:37:13.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA voguxz@mvqpwz.com USA pcmfiixzaf USA 88835 USA voguxz@mvqpwz.com pcmfiixzaf pcmfiixzaf
---------------------- 2010-10-20 23:37:14.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = voguxz@mvqpwz.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE pcmfiixzaf ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 88835 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = voguxz@mvqpwz.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = pcmfiixzaf ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE pcmfiixzaf )) ---------------------- 2010-10-20 23:37:14.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = voguxz@mvqpwz.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE pcmfiixzaf ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 88835 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = voguxz@mvqpwz.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = pcmfiixzaf ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE pcmfiixzaf )) ---------------------- 2010-10-20 23:37:14.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = voguxz@mvqpwz.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE pcmfiixzaf ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 88835 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = voguxz@mvqpwz.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = pcmfiixzaf ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE pcmfiixzaf )) ---------------------- 2010-10-20 23:37:14.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = voguxz@mvqpwz.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE pcmfiixzaf ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 88835 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = voguxz@mvqpwz.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = pcmfiixzaf ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE pcmfiixzaf )) ---------------------- 2010-10-20 23:37:14.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-10-20 23:37:14.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'voguxz@mvqpwz.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'pcmfiixzaf' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '88835' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'voguxz@mvqpwz.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'pcmfiixzaf' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'pcmfiixzaf' ))' ---------------------- 2010-10-20 23:37:14.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "voguxz@mvqpwz.com" ---------------------- 2010-10-20 23:37:14.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-10-21 09:41:45.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-10-21 09:41:45.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString nowNolRc kBjfRRpxdcVC CtcZLKgZPuMXV hdjsaitkdmr lvMCoQmrFZdRT XOoVhLbKHgKgEE InHvQyfa KFbpIOsuWXYWK oWJJHfMtZHkZZq hdjsaitkdmr
### ERROR LOG The Logging Results: ---------------------- 2010-10-21 07:41:45.000 Logging started. ---------------------- 2010-10-21 07:41:45.000 BioCASe protocol used. ---------------------- 2010-10-21 07:41:45.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-10-21 07:41:45.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-10-21 07:41:45.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-10-21 07:41:45.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-10-21 07:41:45.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-10-21 09:41:45.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n nowNolRc\n kBjfRRpxdcVC\n CtcZLKgZPuMXV\n hdjsaitkdmr\n lvMCoQmrFZdRT\n XOoVhLbKHgKgEE\n InHvQyfa\n KFbpIOsuWXYWK\n oWJJHfMtZHkZZq\n hdjsaitkdmr\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-10-21 09:41:45.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n nowNolRc\n kBjfRRpxdcVC\n CtcZLKgZPuMXV\n hdjsaitkdmr\n lvMCoQmrFZdRT\n XOoVhLbKHgKgEE\n InHvQyfa\n KFbpIOsuWXYWK\n oWJJHfMtZHkZZq\n hdjsaitkdmr\n\n\n\n \n
'} ---------------------- 2010-10-21 07:41:45.000 Found online debuglevel setting: 1 ---------------------- 2010-10-21 07:41:45.000 Setting debuglevel from 0 to 1 ---------------------- 2010-10-21 07:41:45.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-10-21 07:41:46.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-10-21 07:41:46.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-10-21 07:41:46.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-10-21 07:41:46.000 Pickled file is of latest revision. ---------------------- 2010-10-21 07:41:46.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-10-21 07:41:46.000 Original filter string parsed:
2.4.2 2010-10-21 09:41:45.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString nowNolRc kBjfRRpxdcVC CtcZLKgZPuMXV hdjsaitkdmr lvMCoQmrFZdRT XOoVhLbKHgKgEE InHvQyfa KFbpIOsuWXYWK oWJJHfMtZHkZZq hdjsaitkdmr
---------------------- 2010-10-21 07:41:46.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE nowNolRc ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = kBjfRRpxdcVC ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE CtcZLKgZPuMXV ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE hdjsaitkdmr ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE lvMCoQmrFZdRT ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE XOoVhLbKHgKgEE ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE InHvQyfa ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = KFbpIOsuWXYWK ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = oWJJHfMtZHkZZq ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE hdjsaitkdmr )) ---------------------- 2010-10-21 07:41:46.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE nowNolRc ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = kBjfRRpxdcVC ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE CtcZLKgZPuMXV ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE hdjsaitkdmr ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE lvMCoQmrFZdRT ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE XOoVhLbKHgKgEE ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE InHvQyfa ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = KFbpIOsuWXYWK ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = oWJJHfMtZHkZZq ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE hdjsaitkdmr )) ---------------------- 2010-10-21 07:41:46.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE nowNolRc ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = kBjfRRpxdcVC ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE CtcZLKgZPuMXV ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE hdjsaitkdmr ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE lvMCoQmrFZdRT ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE XOoVhLbKHgKgEE ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE InHvQyfa ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = KFbpIOsuWXYWK ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = oWJJHfMtZHkZZq ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE hdjsaitkdmr )) ---------------------- 2010-10-21 07:41:46.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE nowNolRc ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = kBjfRRpxdcVC ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE CtcZLKgZPuMXV ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE hdjsaitkdmr ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE lvMCoQmrFZdRT ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE XOoVhLbKHgKgEE ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE InHvQyfa ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = KFbpIOsuWXYWK ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = oWJJHfMtZHkZZq ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE hdjsaitkdmr )) ---------------------- 2010-10-21 07:41:46.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-10-21 07:41:46.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'nowNolRc' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'kBjfRRpxdcVC' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'CtcZLKgZPuMXV' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'hdjsaitkdmr' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'lvMCoQmrFZdRT' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'XOoVhLbKHgKgEE' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'InHvQyfa' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'KFbpIOsuWXYWK' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'oWJJHfMtZHkZZq' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'hdjsaitkdmr' ))' ---------------------- 2010-10-21 07:41:46.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "kBjfRRpxdcVC" ---------------------- 2010-10-21 07:41:46.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-10-22 01:32:44.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-10-22 01:01:15.05 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-10-21 23:32:44.000 Logging started. ---------------------- 2010-10-21 23:32:44.000 BioCASe protocol used. ---------------------- 2010-10-21 23:32:44.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-10-21 23:32:44.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-10-21 23:32:44.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-10-21 23:32:44.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-10-21 23:32:44.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-10-22 01:01:15.05\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-10-22 01:01:15.05\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-10-22 01:01:15.05\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-10-21 23:32:44.000 Found online debuglevel setting: 1 ---------------------- 2010-10-21 23:32:44.000 Setting debuglevel from 0 to 1 ---------------------- 2010-10-21 23:32:44.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-10-21 23:32:44.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-10-21 23:32:44.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-10-21 23:32:44.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-10-21 23:32:44.000 Pickled file is of latest revision. ---------------------- 2010-10-21 23:32:44.000 Original filter string parsed:
0.1 2010-10-22 01:01:15.05 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-10-21 23:32:44.000 Filter created: None ---------------------- 2010-10-21 23:32:44.000 Compressed filter used: None ---------------------- 2010-10-21 23:32:44.000 Counting total matched records with filter=None ---------------------- 2010-10-21 23:32:44.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-10-21 23:32:44.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-10-22 12:07:24.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-10-22 12:07:24.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString vJjOkomQkiGeIq psbrFROlJnwFd JBIGiLdGp raakwgvm AjkqKAQjrBxr hMKCXRdszVvgQox RhHphwnQnIqu XuiXbVnjz lpphkIsPHJgeQtknacf raakwgvm
### ERROR LOG The Logging Results: ---------------------- 2010-10-22 10:07:24.000 Logging started. ---------------------- 2010-10-22 10:07:24.000 BioCASe protocol used. ---------------------- 2010-10-22 10:07:24.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-10-22 10:07:24.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-10-22 10:07:24.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-10-22 10:07:24.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-10-22 10:07:24.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-10-22 12:07:24.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n vJjOkomQkiGeIq\n psbrFROlJnwFd\n JBIGiLdGp\n raakwgvm\n AjkqKAQjrBxr\n hMKCXRdszVvgQox\n RhHphwnQnIqu\n XuiXbVnjz\n lpphkIsPHJgeQtknacf\n raakwgvm\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-10-22 12:07:24.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n vJjOkomQkiGeIq\n psbrFROlJnwFd\n JBIGiLdGp\n raakwgvm\n AjkqKAQjrBxr\n hMKCXRdszVvgQox\n RhHphwnQnIqu\n XuiXbVnjz\n lpphkIsPHJgeQtknacf\n raakwgvm\n\n\n\n \n
'} ---------------------- 2010-10-22 10:07:24.000 Found online debuglevel setting: 1 ---------------------- 2010-10-22 10:07:24.000 Setting debuglevel from 0 to 1 ---------------------- 2010-10-22 10:07:24.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-10-22 10:07:25.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-10-22 10:07:25.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-10-22 10:07:25.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-10-22 10:07:25.000 Pickled file is of latest revision. ---------------------- 2010-10-22 10:07:25.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-10-22 10:07:25.000 Original filter string parsed:
2.4.2 2010-10-22 12:07:24.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString vJjOkomQkiGeIq psbrFROlJnwFd JBIGiLdGp raakwgvm AjkqKAQjrBxr hMKCXRdszVvgQox RhHphwnQnIqu XuiXbVnjz lpphkIsPHJgeQtknacf raakwgvm
---------------------- 2010-10-22 10:07:25.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE vJjOkomQkiGeIq ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = psbrFROlJnwFd ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE JBIGiLdGp ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE raakwgvm ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE AjkqKAQjrBxr ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE hMKCXRdszVvgQox ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE RhHphwnQnIqu ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = XuiXbVnjz ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = lpphkIsPHJgeQtknacf ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE raakwgvm )) ---------------------- 2010-10-22 10:07:25.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE vJjOkomQkiGeIq ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = psbrFROlJnwFd ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE JBIGiLdGp ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE raakwgvm ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE AjkqKAQjrBxr ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE hMKCXRdszVvgQox ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE RhHphwnQnIqu ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = XuiXbVnjz ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = lpphkIsPHJgeQtknacf ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE raakwgvm )) ---------------------- 2010-10-22 10:07:25.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE vJjOkomQkiGeIq ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = psbrFROlJnwFd ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE JBIGiLdGp ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE raakwgvm ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE AjkqKAQjrBxr ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE hMKCXRdszVvgQox ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE RhHphwnQnIqu ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = XuiXbVnjz ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = lpphkIsPHJgeQtknacf ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE raakwgvm )) ---------------------- 2010-10-22 10:07:25.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE vJjOkomQkiGeIq ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = psbrFROlJnwFd ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE JBIGiLdGp ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE raakwgvm ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE AjkqKAQjrBxr ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE hMKCXRdszVvgQox ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE RhHphwnQnIqu ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = XuiXbVnjz ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = lpphkIsPHJgeQtknacf ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE raakwgvm )) ---------------------- 2010-10-22 10:07:25.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-10-22 10:07:25.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'vJjOkomQkiGeIq' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'psbrFROlJnwFd' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'JBIGiLdGp' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'raakwgvm' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'AjkqKAQjrBxr' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'hMKCXRdszVvgQox' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'RhHphwnQnIqu' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'XuiXbVnjz' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'lpphkIsPHJgeQtknacf' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'raakwgvm' ))' ---------------------- 2010-10-22 10:07:25.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "psbrFROlJnwFd" ---------------------- 2010-10-22 10:07:25.000 Setting debuglevel from 1 to 3 **************************************** PONTAURUS **************************************** ### ERROR TIME 2010-10-24 13:09:57.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to pontaurus
2.4.2 2010-10-24 13:09:56.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString hydalrvc USA USA 8077 fromlut
### ERROR LOG The Logging Results: ---------------------- 2010-10-24 11:09:57.000 Logging started. ---------------------- 2010-10-24 11:09:57.000 BioCASe protocol used. ---------------------- 2010-10-24 11:09:57.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['pontaurus']} ---------------------- 2010-10-24 11:09:57.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/pontaurus/provider_setup_file.xml ---------------------- 2010-10-24 11:09:57.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-10-24 11:09:57.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-10-24 11:09:57.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-10-24 13:09:56.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n hydalrvc\n USA\n USA\n 8077\n fromlut\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-10-24 13:09:56.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n hydalrvc\n USA\n USA\n 8077\n fromlut\n\n\n\n \n
'} ---------------------- 2010-10-24 11:09:57.000 Found online debuglevel setting: 1 ---------------------- 2010-10-24 11:09:57.000 Setting debuglevel from 0 to 1 ---------------------- 2010-10-24 11:09:57.000 The biocase.wrapper.dbmod.dbmod_mysql database module has been used. ---------------------- 2010-10-24 11:09:57.000 No DB connection could be established. Please verify DB state and connection parameters in your provider_setup_file.xml Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_mysql.py", line 55, in createDBconnection return MySQLdb.connect( host=self.psfObj.dbIP, db=self.psfObj.datasource, user=self.psfObj.user, passwd=self.psfObj.password ) File "/usr/lib/python2.4/site-packages/MySQLdb/__init__.py", line 66, in Connect return Connection(*args, **kwargs) File "/usr/lib/python2.4/site-packages/MySQLdb/connections.py", line 134, in __init__ super(Connection, self).__init__(*args, **kwargs2) OperationalError: (1045, "Access denied for user 'WebUser'@'localhost' (using password: NO)") ---------------------- 2010-10-24 11:09:57.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 75, in doRequest operationObj = getOperationsObjectForDBMod(self.psfObj, self.logObj, self.responseObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 354, in getOperationsObjectForDBMod operationsObj = operations(psfObj, logObj, removeCMFSubtreePaths, altRootTableAlias) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 68, in __init__ DBModuleClass.__init__(self, psfObj, logObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_mysql.py", line 37, in __init__ DBBasemodule.__init__(self, psfObj, logObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 43, in __init__ self.conn = self.createDBconnection() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_mysql.py", line 57, in createDBconnection raise ConnectionError(log=self.logObj) ConnectionError: ---------------------- 2010-10-24 11:09:57.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-10-27 14:32:44.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-10-27 14:32:44.000 scan
http://digir.net/schema/conceptual/darwin/2003/1.0 /recordset/record/ScientificName
### ERROR LOG The Logging Results: ---------------------- 2010-10-27 12:32:44.000 Logging started. ---------------------- 2010-10-27 12:32:44.000 BioCASe protocol used. ---------------------- 2010-10-27 12:32:44.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-10-27 12:32:44.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-10-27 12:32:44.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-10-27 12:32:45.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-10-27 12:32:45.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-10-27 14:32:44.000\n scan\n
\n \n http://digir.net/schema/conceptual/darwin/2003/1.0\n /recordset/record/ScientificName\n \n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-10-27 14:32:44.000\n scan\n
\n \n http://digir.net/schema/conceptual/darwin/2003/1.0\n /recordset/record/ScientificName\n \n \n
'} ---------------------- 2010-10-27 12:32:45.000 Found online debuglevel setting: 1 ---------------------- 2010-10-27 12:32:45.000 Setting debuglevel from 0 to 1 ---------------------- 2010-10-27 12:32:45.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-10-27 12:32:45.000 Try to get CMF for namespace http://digir.net/schema/conceptual/darwin/2003/1.0 ---------------------- 2010-10-27 12:32:45.000 No CMF found! Available CMFs: [u'http://www.tdwg.org/schemas/abcd/1.2', u'http://www.tdwg.org/schemas/abcd/2.06'] ---------------------- 2010-10-27 12:32:45.000 Load CMFile 'None' ---------------------- 2010-10-27 12:32:45.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://digir.net/schema/conceptual/darwin/2003/1.0 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 231, in getCMFobject CMFObject.loadCMFdata(self.psfObj.getCMFfilename(namespace), psfObj=self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 249, in loadCMFdata if type(filename) not in(StringType, UnicodeType) or not os.path.isfile(filename): raise "CMFile %s does not exist. Cant load that file" % filename CMFile None does not exist. Cant load that file ---------------------- 2010-10-27 12:32:45.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 118, in scan self.CMFObject = self.getCMFobject(self.requestObj.reqSchema, altRootTableKey=self.altRootTableAlias) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 237, in getCMFobject raise CMFError(log=self.logObj, cmf=namespace) CMFError: ---------------------- 2010-10-27 12:32:45.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-10-28 02:24:07.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-10-28 02:24:06.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString YtdjOaBXY kyarpk@sjlglw.com vLQShIMtRE efhxgmajk USA 3376 7WhDW kyarpk@sjlglw.com kyarpk@sjlglw.com efhxgmajk
### ERROR LOG The Logging Results: ---------------------- 2010-10-28 00:24:07.000 Logging started. ---------------------- 2010-10-28 00:24:07.000 BioCASe protocol used. ---------------------- 2010-10-28 00:24:07.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-10-28 00:24:07.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-10-28 00:24:07.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-10-28 00:24:07.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-10-28 00:24:07.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-10-28 02:24:06.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n YtdjOaBXY\n kyarpk@sjlglw.com\n vLQShIMtRE\n efhxgmajk\n USA\n 3376\n 7WhDW\n kyarpk@sjlglw.com\n kyarpk@sjlglw.com\n efhxgmajk\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-10-28 02:24:06.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n YtdjOaBXY\n kyarpk@sjlglw.com\n vLQShIMtRE\n efhxgmajk\n USA\n 3376\n 7WhDW\n kyarpk@sjlglw.com\n kyarpk@sjlglw.com\n efhxgmajk\n\n\n\n \n
'} ---------------------- 2010-10-28 00:24:07.000 Found online debuglevel setting: 1 ---------------------- 2010-10-28 00:24:07.000 Setting debuglevel from 0 to 1 ---------------------- 2010-10-28 00:24:07.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-10-28 00:24:07.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-10-28 00:24:07.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-10-28 00:24:07.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-10-28 00:24:08.000 Pickled file is of latest revision. ---------------------- 2010-10-28 00:24:08.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-10-28 00:24:08.000 Original filter string parsed:
2.4.2 2010-10-28 02:24:06.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString YtdjOaBXY kyarpk@sjlglw.com vLQShIMtRE efhxgmajk USA 3376 7WhDW kyarpk@sjlglw.com kyarpk@sjlglw.com efhxgmajk
---------------------- 2010-10-28 00:24:08.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE YtdjOaBXY ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = kyarpk@sjlglw.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE vLQShIMtRE ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE efhxgmajk ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 3376 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 7WhDW ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = kyarpk@sjlglw.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = kyarpk@sjlglw.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE efhxgmajk )) ---------------------- 2010-10-28 00:24:08.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE YtdjOaBXY ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = kyarpk@sjlglw.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE vLQShIMtRE ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE efhxgmajk ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 3376 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 7WhDW ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = kyarpk@sjlglw.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = kyarpk@sjlglw.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE efhxgmajk )) ---------------------- 2010-10-28 00:24:08.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE YtdjOaBXY ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = kyarpk@sjlglw.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE vLQShIMtRE ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE efhxgmajk ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 3376 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 7WhDW ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = kyarpk@sjlglw.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = kyarpk@sjlglw.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE efhxgmajk )) ---------------------- 2010-10-28 00:24:08.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE YtdjOaBXY ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = kyarpk@sjlglw.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE vLQShIMtRE ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE efhxgmajk ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 3376 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 7WhDW ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = kyarpk@sjlglw.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = kyarpk@sjlglw.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE efhxgmajk )) ---------------------- 2010-10-28 00:24:08.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-10-28 00:24:08.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'YtdjOaBXY' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'kyarpk@sjlglw.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'vLQShIMtRE' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'efhxgmajk' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '3376' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE '7WhDW' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'kyarpk@sjlglw.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'kyarpk@sjlglw.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'efhxgmajk' ))' ---------------------- 2010-10-28 00:24:08.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "kyarpk@sjlglw.com" ---------------------- 2010-10-28 00:24:08.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-10-29 01:29:05.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-10-29 00:57:58.40 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-10-28 23:29:05.000 Logging started. ---------------------- 2010-10-28 23:29:05.000 BioCASe protocol used. ---------------------- 2010-10-28 23:29:05.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-10-28 23:29:05.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-10-28 23:29:05.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-10-28 23:29:05.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-10-28 23:29:05.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-10-29 00:57:58.40\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-10-29 00:57:58.40\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-10-29 00:57:58.40\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-10-28 23:29:05.000 Found online debuglevel setting: 1 ---------------------- 2010-10-28 23:29:05.000 Setting debuglevel from 0 to 1 ---------------------- 2010-10-28 23:29:05.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-10-28 23:29:05.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-10-28 23:29:05.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-10-28 23:29:05.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-10-28 23:29:05.000 Pickled file is of latest revision. ---------------------- 2010-10-28 23:29:05.000 Original filter string parsed:
0.1 2010-10-29 00:57:58.40 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-10-28 23:29:05.000 Filter created: None ---------------------- 2010-10-28 23:29:05.000 Compressed filter used: None ---------------------- 2010-10-28 23:29:05.000 Counting total matched records with filter=None ---------------------- 2010-10-28 23:29:05.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-10-28 23:29:05.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-10-29 05:54:03.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians 216Gkr vgqrfmgcylbr, [url=http://wbrmkcgrprwu.com/]wbrmkcgrprwu[/url], [link=http://fowlnqcbtljq.com/]fowlnqcbtljq[/link], http://zwgcpdlyrnoe.com/ ### ERROR LOG The Logging Results: ---------------------- 2010-10-29 03:54:03.000 Logging started. ---------------------- 2010-10-29 03:54:03.000 BioCASe protocol used. ---------------------- 2010-10-29 03:54:03.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-10-29 03:54:03.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-10-29 03:54:03.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-10-29 03:54:03.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-10-29 03:54:03.000 All parameters found in the request: {'debug': '1', 'query': '216Gkr vgqrfmgcylbr, [url=http://wbrmkcgrprwu.com/]wbrmkcgrprwu[/url], [link=http://fowlnqcbtljq.com/]fowlnqcbtljq[/link], http://zwgcpdlyrnoe.com/', 'request_string': '216Gkr vgqrfmgcylbr, [url=http://wbrmkcgrprwu.com/]wbrmkcgrprwu[/url], [link=http://fowlnqcbtljq.com/]fowlnqcbtljq[/link], http://zwgcpdlyrnoe.com/'} ---------------------- 2010-10-29 03:54:03.000 Found online debuglevel setting: 1 ---------------------- 2010-10-29 03:54:03.000 Setting debuglevel from 0 to 1 ---------------------- 2010-10-29 03:54:03.000 REQ_PARSING_ERROR: The request could not be parsed. Please check if it is a valid XML document. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 87, in parseRequestString parseString(RequestString, handler) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/__init__.py", line 47, in parseString parser.parse(inpsrc) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 109, in parse xmlreader.IncrementalParser.parse(self, source) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/xmlreader.py", line 123, in parse self.feed(buffer) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 220, in feed self._err_handler.fatalError(exc) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/handler.py", line 38, in fatalError raise exception SAXParseException: :1:0: syntax error ---------------------- 2010-10-29 03:54:03.000 Serious PyWrapper instance crash Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/www/pywrapper.cgi", line 55, in ? pywInstance.setRequest() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 136, in setRequest self.protocolObj.setRequest(args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 37, in setRequest ProtocolBaseClass.setRequest(self, RequestClass, args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/base_protocol.py", line 41, in setRequest self.requestObj.setRequest(args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 48, in setRequest self.parseRequestString(args['request_string']) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 89, in parseRequestString raise RequestParseError(self.logObj) RequestParseError: ---------------------- 2010-10-29 03:54:03.000 Unknown Request-type : None ---------------------- 2010-10-29 03:54:03.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-10-30 21:36:58.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-10-30 21:36:57.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString sHAyhbgGnMhncPJsHP HpFxTWGFjuVJhsggpbg OjRRTFlRBwFvyyKsyx dprvspwib mWtwWijWuusnV FAaIgGLFNhQSWVxXJBV iECCvFcM oyOUHxJvhSZOuM uNUtTEZeGJjbPKfhmC dprvspwib
### ERROR LOG The Logging Results: ---------------------- 2010-10-30 19:36:58.000 Logging started. ---------------------- 2010-10-30 19:36:58.000 BioCASe protocol used. ---------------------- 2010-10-30 19:36:58.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-10-30 19:36:58.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-10-30 19:36:58.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-10-30 19:36:58.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-10-30 19:36:58.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-10-30 21:36:57.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n sHAyhbgGnMhncPJsHP\n HpFxTWGFjuVJhsggpbg\n OjRRTFlRBwFvyyKsyx\n dprvspwib\n mWtwWijWuusnV\n FAaIgGLFNhQSWVxXJBV\n iECCvFcM\n oyOUHxJvhSZOuM\n uNUtTEZeGJjbPKfhmC\n dprvspwib\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-10-30 21:36:57.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n sHAyhbgGnMhncPJsHP\n HpFxTWGFjuVJhsggpbg\n OjRRTFlRBwFvyyKsyx\n dprvspwib\n mWtwWijWuusnV\n FAaIgGLFNhQSWVxXJBV\n iECCvFcM\n oyOUHxJvhSZOuM\n uNUtTEZeGJjbPKfhmC\n dprvspwib\n\n\n\n \n
'} ---------------------- 2010-10-30 19:36:58.000 Found online debuglevel setting: 1 ---------------------- 2010-10-30 19:36:58.000 Setting debuglevel from 0 to 1 ---------------------- 2010-10-30 19:36:58.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-10-30 19:36:58.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-10-30 19:36:58.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-10-30 19:36:58.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-10-30 19:36:59.000 Pickled file is of latest revision. ---------------------- 2010-10-30 19:36:59.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-10-30 19:36:59.000 Original filter string parsed:
2.4.2 2010-10-30 21:36:57.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString sHAyhbgGnMhncPJsHP HpFxTWGFjuVJhsggpbg OjRRTFlRBwFvyyKsyx dprvspwib mWtwWijWuusnV FAaIgGLFNhQSWVxXJBV iECCvFcM oyOUHxJvhSZOuM uNUtTEZeGJjbPKfhmC dprvspwib
---------------------- 2010-10-30 19:36:59.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE sHAyhbgGnMhncPJsHP ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = HpFxTWGFjuVJhsggpbg ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE OjRRTFlRBwFvyyKsyx ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE dprvspwib ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE mWtwWijWuusnV ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE FAaIgGLFNhQSWVxXJBV ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE iECCvFcM ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = oyOUHxJvhSZOuM ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = uNUtTEZeGJjbPKfhmC ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE dprvspwib )) ---------------------- 2010-10-30 19:36:59.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE sHAyhbgGnMhncPJsHP ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = HpFxTWGFjuVJhsggpbg ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE OjRRTFlRBwFvyyKsyx ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE dprvspwib ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE mWtwWijWuusnV ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE FAaIgGLFNhQSWVxXJBV ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE iECCvFcM ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = oyOUHxJvhSZOuM ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = uNUtTEZeGJjbPKfhmC ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE dprvspwib )) ---------------------- 2010-10-30 19:36:59.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE sHAyhbgGnMhncPJsHP ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = HpFxTWGFjuVJhsggpbg ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE OjRRTFlRBwFvyyKsyx ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE dprvspwib ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE mWtwWijWuusnV ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE FAaIgGLFNhQSWVxXJBV ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE iECCvFcM ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = oyOUHxJvhSZOuM ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = uNUtTEZeGJjbPKfhmC ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE dprvspwib )) ---------------------- 2010-10-30 19:36:59.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE sHAyhbgGnMhncPJsHP ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = HpFxTWGFjuVJhsggpbg ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE OjRRTFlRBwFvyyKsyx ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE dprvspwib ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE mWtwWijWuusnV ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE FAaIgGLFNhQSWVxXJBV ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE iECCvFcM ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = oyOUHxJvhSZOuM ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = uNUtTEZeGJjbPKfhmC ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE dprvspwib )) ---------------------- 2010-10-30 19:36:59.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-10-30 19:36:59.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'sHAyhbgGnMhncPJsHP' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'HpFxTWGFjuVJhsggpbg' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'OjRRTFlRBwFvyyKsyx' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'dprvspwib' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'mWtwWijWuusnV' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'FAaIgGLFNhQSWVxXJBV' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'iECCvFcM' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'oyOUHxJvhSZOuM' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'uNUtTEZeGJjbPKfhmC' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'dprvspwib' ))' ---------------------- 2010-10-30 19:36:59.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "HpFxTWGFjuVJhsggpbg" ---------------------- 2010-10-30 19:36:59.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-10-31 15:25:42.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-10-31 15:25:41.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString JefQKlFdPrb YMGTyHzjCbhfbBAAIQ QXyGZJzx oxpxnlq USA KMSMHgDLId TyaRLxSUhlvW FfokKeAevIkAyO WHEWxnMj oxpxnlq
### ERROR LOG The Logging Results: ---------------------- 2010-10-31 14:25:42.000 Logging started. ---------------------- 2010-10-31 14:25:42.000 BioCASe protocol used. ---------------------- 2010-10-31 14:25:42.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-10-31 14:25:42.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-10-31 14:25:42.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-10-31 14:25:42.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-10-31 14:25:42.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-10-31 15:25:41.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n JefQKlFdPrb\n YMGTyHzjCbhfbBAAIQ\n QXyGZJzx\n oxpxnlq\n USA\n KMSMHgDLId\n TyaRLxSUhlvW\n FfokKeAevIkAyO\n WHEWxnMj\n oxpxnlq\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-10-31 15:25:41.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n JefQKlFdPrb\n YMGTyHzjCbhfbBAAIQ\n QXyGZJzx\n oxpxnlq\n USA\n KMSMHgDLId\n TyaRLxSUhlvW\n FfokKeAevIkAyO\n WHEWxnMj\n oxpxnlq\n\n\n\n \n
'} ---------------------- 2010-10-31 14:25:42.000 Found online debuglevel setting: 1 ---------------------- 2010-10-31 14:25:42.000 Setting debuglevel from 0 to 1 ---------------------- 2010-10-31 14:25:42.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-10-31 14:25:42.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-10-31 14:25:42.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-10-31 14:25:42.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-10-31 14:25:42.000 Pickled file is of latest revision. ---------------------- 2010-10-31 14:25:42.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-10-31 14:25:42.000 Original filter string parsed:
2.4.2 2010-10-31 15:25:41.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString JefQKlFdPrb YMGTyHzjCbhfbBAAIQ QXyGZJzx oxpxnlq USA KMSMHgDLId TyaRLxSUhlvW FfokKeAevIkAyO WHEWxnMj oxpxnlq
---------------------- 2010-10-31 14:25:42.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE JefQKlFdPrb ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = YMGTyHzjCbhfbBAAIQ ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE QXyGZJzx ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE oxpxnlq ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE KMSMHgDLId ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE TyaRLxSUhlvW ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = FfokKeAevIkAyO ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = WHEWxnMj ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE oxpxnlq )) ---------------------- 2010-10-31 14:25:42.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE JefQKlFdPrb ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = YMGTyHzjCbhfbBAAIQ ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE QXyGZJzx ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE oxpxnlq ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE KMSMHgDLId ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE TyaRLxSUhlvW ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = FfokKeAevIkAyO ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = WHEWxnMj ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE oxpxnlq )) ---------------------- 2010-10-31 14:25:42.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE JefQKlFdPrb ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = YMGTyHzjCbhfbBAAIQ ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE QXyGZJzx ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE oxpxnlq ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE KMSMHgDLId ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE TyaRLxSUhlvW ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = FfokKeAevIkAyO ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = WHEWxnMj ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE oxpxnlq )) ---------------------- 2010-10-31 14:25:42.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE JefQKlFdPrb ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = YMGTyHzjCbhfbBAAIQ ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE QXyGZJzx ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE oxpxnlq ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE KMSMHgDLId ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE TyaRLxSUhlvW ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = FfokKeAevIkAyO ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = WHEWxnMj ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE oxpxnlq )) ---------------------- 2010-10-31 14:25:42.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-10-31 14:25:42.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'JefQKlFdPrb' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'YMGTyHzjCbhfbBAAIQ' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'QXyGZJzx' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'oxpxnlq' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'KMSMHgDLId' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'TyaRLxSUhlvW' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'FfokKeAevIkAyO' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'WHEWxnMj' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'oxpxnlq' ))' ---------------------- 2010-10-31 14:25:42.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "YMGTyHzjCbhfbBAAIQ" ---------------------- 2010-10-31 14:25:43.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-11-04 02:11:10.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-11-04 02:11:09.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString FbJBYQfh qHYnAcjMsZ ZquPafcuJZBR zfoamr JDlgZNCUswCcPxOeHUz wjFCEMgocY krgEsamFbAwzqJTeEpq lPInmLzABoJ iBBEGsblVMlmAngf zfoamr
### ERROR LOG The Logging Results: ---------------------- 2010-11-04 01:11:10.000 Logging started. ---------------------- 2010-11-04 01:11:10.000 BioCASe protocol used. ---------------------- 2010-11-04 01:11:10.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-11-04 01:11:10.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-11-04 01:11:10.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-11-04 01:11:10.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-11-04 01:11:10.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-11-04 02:11:09.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n FbJBYQfh\n qHYnAcjMsZ\n ZquPafcuJZBR\n zfoamr\n JDlgZNCUswCcPxOeHUz\n wjFCEMgocY\n krgEsamFbAwzqJTeEpq\n lPInmLzABoJ\n iBBEGsblVMlmAngf\n zfoamr\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-11-04 02:11:09.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n FbJBYQfh\n qHYnAcjMsZ\n ZquPafcuJZBR\n zfoamr\n JDlgZNCUswCcPxOeHUz\n wjFCEMgocY\n krgEsamFbAwzqJTeEpq\n lPInmLzABoJ\n iBBEGsblVMlmAngf\n zfoamr\n\n\n\n \n
'} ---------------------- 2010-11-04 01:11:10.000 Found online debuglevel setting: 1 ---------------------- 2010-11-04 01:11:10.000 Setting debuglevel from 0 to 1 ---------------------- 2010-11-04 01:11:10.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-11-04 01:11:10.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-11-04 01:11:10.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-11-04 01:11:10.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-11-04 01:11:11.000 Pickled file is of latest revision. ---------------------- 2010-11-04 01:11:11.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-11-04 01:11:11.000 Original filter string parsed:
2.4.2 2010-11-04 02:11:09.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString FbJBYQfh qHYnAcjMsZ ZquPafcuJZBR zfoamr JDlgZNCUswCcPxOeHUz wjFCEMgocY krgEsamFbAwzqJTeEpq lPInmLzABoJ iBBEGsblVMlmAngf zfoamr
---------------------- 2010-11-04 01:11:11.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE FbJBYQfh ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = qHYnAcjMsZ ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE ZquPafcuJZBR ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE zfoamr ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE JDlgZNCUswCcPxOeHUz ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE wjFCEMgocY ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE krgEsamFbAwzqJTeEpq ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = lPInmLzABoJ ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = iBBEGsblVMlmAngf ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE zfoamr )) ---------------------- 2010-11-04 01:11:11.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE FbJBYQfh ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = qHYnAcjMsZ ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE ZquPafcuJZBR ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE zfoamr ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE JDlgZNCUswCcPxOeHUz ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE wjFCEMgocY ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE krgEsamFbAwzqJTeEpq ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = lPInmLzABoJ ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = iBBEGsblVMlmAngf ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE zfoamr )) ---------------------- 2010-11-04 01:11:11.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE FbJBYQfh ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = qHYnAcjMsZ ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE ZquPafcuJZBR ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE zfoamr ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE JDlgZNCUswCcPxOeHUz ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE wjFCEMgocY ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE krgEsamFbAwzqJTeEpq ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = lPInmLzABoJ ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = iBBEGsblVMlmAngf ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE zfoamr )) ---------------------- 2010-11-04 01:11:11.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE FbJBYQfh ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = qHYnAcjMsZ ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE ZquPafcuJZBR ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE zfoamr ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE JDlgZNCUswCcPxOeHUz ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE wjFCEMgocY ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE krgEsamFbAwzqJTeEpq ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = lPInmLzABoJ ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = iBBEGsblVMlmAngf ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE zfoamr )) ---------------------- 2010-11-04 01:11:11.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-11-04 01:11:11.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'FbJBYQfh' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'qHYnAcjMsZ' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'ZquPafcuJZBR' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'zfoamr' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'JDlgZNCUswCcPxOeHUz' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'wjFCEMgocY' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'krgEsamFbAwzqJTeEpq' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'lPInmLzABoJ' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'iBBEGsblVMlmAngf' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'zfoamr' ))' ---------------------- 2010-11-04 01:11:11.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "qHYnAcjMsZ" ---------------------- 2010-11-04 01:11:11.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-11-05 01:31:52.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-11-05 01:01:08.11 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-11-05 00:31:52.000 Logging started. ---------------------- 2010-11-05 00:31:52.000 BioCASe protocol used. ---------------------- 2010-11-05 00:31:52.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-11-05 00:31:52.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-11-05 00:31:52.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-11-05 00:31:53.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-11-05 00:31:53.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-11-05 01:01:08.11\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-11-05 01:01:08.11\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-11-05 01:01:08.11\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-11-05 00:31:53.000 Found online debuglevel setting: 1 ---------------------- 2010-11-05 00:31:53.000 Setting debuglevel from 0 to 1 ---------------------- 2010-11-05 00:31:53.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-11-05 00:31:53.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-11-05 00:31:53.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-11-05 00:31:53.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-11-05 00:31:53.000 Pickled file is of latest revision. ---------------------- 2010-11-05 00:31:53.000 Original filter string parsed:
0.1 2010-11-05 01:01:08.11 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-11-05 00:31:53.000 Filter created: None ---------------------- 2010-11-05 00:31:53.000 Compressed filter used: None ---------------------- 2010-11-05 00:31:53.000 Counting total matched records with filter=None ---------------------- 2010-11-05 00:31:53.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-11-05 00:31:53.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2010-11-06 17:12:38.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2010-11-06 16:12:38.000 Logging started. ---------------------- 2010-11-06 16:12:38.000 BioCASe protocol used. ---------------------- 2010-11-06 16:12:38.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2010-11-06 16:12:38.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2010-11-06 16:12:38.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-11-06 16:12:38.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2010-11-06 16:12:38.000 Unknown request type! Default to capabilities. ---------------------- 2010-11-06 16:12:38.000 Destination hostname could not be determined ---------------------- 2010-11-06 16:12:38.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2010-11-06 16:12:38.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-11-06 16:12:38.000 Pickled file is of latest revision. ---------------------- 2010-11-06 16:12:38.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2010-11-06 16:12:38.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2010-11-06 16:12:38.000 Reset CMF convenience cache data hash. ---------------------- 2010-11-06 16:12:38.000 Loading CMF from the source XML file. ---------------------- 2010-11-06 16:12:38.000 CMF Version 2.1 detected. ---------------------- 2010-11-06 16:12:38.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2010-11-06 16:12:38.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2010-11-06 16:12:38.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-11-06 16:12:38.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-11-06 16:12:38.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2010-11-06 17:12:54.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2010-11-06 16:12:54.000 Logging started. ---------------------- 2010-11-06 16:12:54.000 BioCASe protocol used. ---------------------- 2010-11-06 16:12:54.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2010-11-06 16:12:54.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2010-11-06 16:12:54.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-11-06 16:12:54.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2010-11-06 16:12:54.000 Unknown request type! Default to capabilities. ---------------------- 2010-11-06 16:12:54.000 Destination hostname could not be determined ---------------------- 2010-11-06 16:12:54.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2010-11-06 16:12:54.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-11-06 16:12:54.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-11-06 16:12:54.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2010-11-06 16:12:54.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-11-06 16:12:54.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-11-06 16:12:54.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-11-06 17:13:09.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2010-11-06 16:13:09.000 Logging started. ---------------------- 2010-11-06 16:13:09.000 BioCASe protocol used. ---------------------- 2010-11-06 16:13:09.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-11-06 16:13:09.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-11-06 16:13:09.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-11-06 16:13:09.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2010-11-06 16:13:09.000 Unknown request type! Default to capabilities. ---------------------- 2010-11-06 16:13:09.000 Destination hostname could not be determined ---------------------- 2010-11-06 16:13:09.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2010-11-06 16:13:09.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2010-11-06 16:13:09.000 Reset CMF convenience cache data hash. ---------------------- 2010-11-06 16:13:09.000 Loading CMF from the source XML file. ---------------------- 2010-11-06 16:13:09.000 CMF Version 2.1 detected. ---------------------- 2010-11-06 16:13:09.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2010-11-06 16:13:09.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2010-11-06 16:13:09.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-11-06 16:13:09.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-11-06 16:13:09.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-11-06 16:13:09.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-11-06 16:13:09.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-11-06 16:13:10.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-11-06 18:35:02.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-11-06 18:35:01.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString WZfQbSoWRLrwLxfGJn PXXryaVUPeEEXpBqW YiUPlUOkpzEiD dsfoys fbOCyBOejDNAstZ DJPCeaXjRXiGhlFu tNMaoisZq oKosqBbSVhb zTDVYQcgWPdQNd dsfoys
### ERROR LOG The Logging Results: ---------------------- 2010-11-06 17:35:02.000 Logging started. ---------------------- 2010-11-06 17:35:02.000 BioCASe protocol used. ---------------------- 2010-11-06 17:35:02.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-11-06 17:35:02.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-11-06 17:35:02.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-11-06 17:35:02.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-11-06 17:35:02.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-11-06 18:35:01.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n WZfQbSoWRLrwLxfGJn\n PXXryaVUPeEEXpBqW\n YiUPlUOkpzEiD\n dsfoys\n fbOCyBOejDNAstZ\n DJPCeaXjRXiGhlFu\n tNMaoisZq\n oKosqBbSVhb\n zTDVYQcgWPdQNd\n dsfoys\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-11-06 18:35:01.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n WZfQbSoWRLrwLxfGJn\n PXXryaVUPeEEXpBqW\n YiUPlUOkpzEiD\n dsfoys\n fbOCyBOejDNAstZ\n DJPCeaXjRXiGhlFu\n tNMaoisZq\n oKosqBbSVhb\n zTDVYQcgWPdQNd\n dsfoys\n\n\n\n \n
'} ---------------------- 2010-11-06 17:35:02.000 Found online debuglevel setting: 1 ---------------------- 2010-11-06 17:35:02.000 Setting debuglevel from 0 to 1 ---------------------- 2010-11-06 17:35:02.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-11-06 17:35:02.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-11-06 17:35:02.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-11-06 17:35:02.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-11-06 17:35:03.000 Pickled file is of latest revision. ---------------------- 2010-11-06 17:35:03.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-11-06 17:35:03.000 Original filter string parsed:
2.4.2 2010-11-06 18:35:01.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString WZfQbSoWRLrwLxfGJn PXXryaVUPeEEXpBqW YiUPlUOkpzEiD dsfoys fbOCyBOejDNAstZ DJPCeaXjRXiGhlFu tNMaoisZq oKosqBbSVhb zTDVYQcgWPdQNd dsfoys
---------------------- 2010-11-06 17:35:03.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE WZfQbSoWRLrwLxfGJn ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = PXXryaVUPeEEXpBqW ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE YiUPlUOkpzEiD ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE dsfoys ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE fbOCyBOejDNAstZ ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE DJPCeaXjRXiGhlFu ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE tNMaoisZq ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = oKosqBbSVhb ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = zTDVYQcgWPdQNd ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE dsfoys )) ---------------------- 2010-11-06 17:35:03.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE WZfQbSoWRLrwLxfGJn ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = PXXryaVUPeEEXpBqW ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE YiUPlUOkpzEiD ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE dsfoys ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE fbOCyBOejDNAstZ ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE DJPCeaXjRXiGhlFu ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE tNMaoisZq ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = oKosqBbSVhb ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = zTDVYQcgWPdQNd ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE dsfoys )) ---------------------- 2010-11-06 17:35:03.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE WZfQbSoWRLrwLxfGJn ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = PXXryaVUPeEEXpBqW ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE YiUPlUOkpzEiD ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE dsfoys ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE fbOCyBOejDNAstZ ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE DJPCeaXjRXiGhlFu ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE tNMaoisZq ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = oKosqBbSVhb ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = zTDVYQcgWPdQNd ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE dsfoys )) ---------------------- 2010-11-06 17:35:03.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE WZfQbSoWRLrwLxfGJn ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = PXXryaVUPeEEXpBqW ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE YiUPlUOkpzEiD ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE dsfoys ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE fbOCyBOejDNAstZ ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE DJPCeaXjRXiGhlFu ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE tNMaoisZq ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = oKosqBbSVhb ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = zTDVYQcgWPdQNd ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE dsfoys )) ---------------------- 2010-11-06 17:35:03.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-11-06 17:35:03.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'WZfQbSoWRLrwLxfGJn' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'PXXryaVUPeEEXpBqW' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'YiUPlUOkpzEiD' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'dsfoys' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'fbOCyBOejDNAstZ' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'DJPCeaXjRXiGhlFu' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'tNMaoisZq' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'oKosqBbSVhb' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'zTDVYQcgWPdQNd' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'dsfoys' ))' ---------------------- 2010-11-06 17:35:03.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "PXXryaVUPeEEXpBqW" ---------------------- 2010-11-06 17:35:03.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-11-06 23:57:02.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-11-06 23:57:01.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString wPyPIgBJbdaktutY ekkact@htqyqy.com viHaAexxlNwIR vysexkmueoe USA 64863 p3jTWf ekkact@htqyqy.com ekkact@htqyqy.com vysexkmueoe
### ERROR LOG The Logging Results: ---------------------- 2010-11-06 22:57:02.000 Logging started. ---------------------- 2010-11-06 22:57:02.000 BioCASe protocol used. ---------------------- 2010-11-06 22:57:02.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-11-06 22:57:02.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-11-06 22:57:02.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-11-06 22:57:02.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-11-06 22:57:02.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-11-06 23:57:01.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n wPyPIgBJbdaktutY\n ekkact@htqyqy.com\n viHaAexxlNwIR\n vysexkmueoe\n USA\n 64863\n p3jTWf\n ekkact@htqyqy.com\n ekkact@htqyqy.com\n vysexkmueoe\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-11-06 23:57:01.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n wPyPIgBJbdaktutY\n ekkact@htqyqy.com\n viHaAexxlNwIR\n vysexkmueoe\n USA\n 64863\n p3jTWf\n ekkact@htqyqy.com\n ekkact@htqyqy.com\n vysexkmueoe\n\n\n\n \n
'} ---------------------- 2010-11-06 22:57:02.000 Found online debuglevel setting: 1 ---------------------- 2010-11-06 22:57:02.000 Setting debuglevel from 0 to 1 ---------------------- 2010-11-06 22:57:02.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-11-06 22:57:02.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-11-06 22:57:02.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-11-06 22:57:02.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-11-06 22:57:02.000 Pickled file is of latest revision. ---------------------- 2010-11-06 22:57:02.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-11-06 22:57:02.000 Original filter string parsed:
2.4.2 2010-11-06 23:57:01.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString wPyPIgBJbdaktutY ekkact@htqyqy.com viHaAexxlNwIR vysexkmueoe USA 64863 p3jTWf ekkact@htqyqy.com ekkact@htqyqy.com vysexkmueoe
---------------------- 2010-11-06 22:57:02.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE wPyPIgBJbdaktutY ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ekkact@htqyqy.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE viHaAexxlNwIR ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE vysexkmueoe ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 64863 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE p3jTWf ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ekkact@htqyqy.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ekkact@htqyqy.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE vysexkmueoe )) ---------------------- 2010-11-06 22:57:02.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE wPyPIgBJbdaktutY ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ekkact@htqyqy.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE viHaAexxlNwIR ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE vysexkmueoe ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 64863 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE p3jTWf ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ekkact@htqyqy.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ekkact@htqyqy.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE vysexkmueoe )) ---------------------- 2010-11-06 22:57:02.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE wPyPIgBJbdaktutY ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ekkact@htqyqy.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE viHaAexxlNwIR ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE vysexkmueoe ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 64863 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE p3jTWf ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ekkact@htqyqy.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ekkact@htqyqy.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE vysexkmueoe )) ---------------------- 2010-11-06 22:57:02.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE wPyPIgBJbdaktutY ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ekkact@htqyqy.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE viHaAexxlNwIR ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE vysexkmueoe ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 64863 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE p3jTWf ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ekkact@htqyqy.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ekkact@htqyqy.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE vysexkmueoe )) ---------------------- 2010-11-06 22:57:02.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-11-06 22:57:02.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'wPyPIgBJbdaktutY' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'ekkact@htqyqy.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'viHaAexxlNwIR' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'vysexkmueoe' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '64863' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'p3jTWf' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'ekkact@htqyqy.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'ekkact@htqyqy.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'vysexkmueoe' ))' ---------------------- 2010-11-06 22:57:02.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "ekkact@htqyqy.com" ---------------------- 2010-11-06 22:57:03.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINABURUNDI **************************************** ### ERROR TIME 2010-11-08 13:44:47.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBurundi a6EiNc pjeykwslrbul, [url=http://hyyknpltbzak.com/]hyyknpltbzak[/url], [link=http://kemztozailaz.com/]kemztozailaz[/link], http://wkeyeekbulnw.com/ ### ERROR LOG The Logging Results: ---------------------- 2010-11-08 12:44:47.000 Logging started. ---------------------- 2010-11-08 12:44:47.000 BioCASe protocol used. ---------------------- 2010-11-08 12:44:47.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBurundi']} ---------------------- 2010-11-08 12:44:47.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBurundi/provider_setup_file.xml ---------------------- 2010-11-08 12:44:47.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-11-08 12:44:47.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-11-08 12:44:47.000 All parameters found in the request: {'debug': '1', 'query': 'a6EiNc pjeykwslrbul, [url=http://hyyknpltbzak.com/]hyyknpltbzak[/url], [link=http://kemztozailaz.com/]kemztozailaz[/link], http://wkeyeekbulnw.com/', 'request_string': 'a6EiNc pjeykwslrbul, [url=http://hyyknpltbzak.com/]hyyknpltbzak[/url], [link=http://kemztozailaz.com/]kemztozailaz[/link], http://wkeyeekbulnw.com/'} ---------------------- 2010-11-08 12:44:47.000 Found online debuglevel setting: 1 ---------------------- 2010-11-08 12:44:47.000 Setting debuglevel from 0 to 1 ---------------------- 2010-11-08 12:44:47.000 REQ_PARSING_ERROR: The request could not be parsed. Please check if it is a valid XML document. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 87, in parseRequestString parseString(RequestString, handler) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/__init__.py", line 47, in parseString parser.parse(inpsrc) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 109, in parse xmlreader.IncrementalParser.parse(self, source) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/xmlreader.py", line 123, in parse self.feed(buffer) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 220, in feed self._err_handler.fatalError(exc) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/handler.py", line 38, in fatalError raise exception SAXParseException: :1:0: syntax error ---------------------- 2010-11-08 12:44:47.000 Serious PyWrapper instance crash Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/www/pywrapper.cgi", line 55, in ? pywInstance.setRequest() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 136, in setRequest self.protocolObj.setRequest(args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 37, in setRequest ProtocolBaseClass.setRequest(self, RequestClass, args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/base_protocol.py", line 41, in setRequest self.requestObj.setRequest(args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 48, in setRequest self.parseRequestString(args['request_string']) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 89, in parseRequestString raise RequestParseError(self.logObj) RequestParseError: ---------------------- 2010-11-08 12:44:47.000 Unknown Request-type : None ---------------------- 2010-11-08 12:44:47.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-11-11 06:31:04.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-11-11 06:31:03.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA crnvwd@oyqlkv.com USA oaewqdupljs USA 9014 USA crnvwd@oyqlkv.com oaewqdupljs oaewqdupljs
### ERROR LOG The Logging Results: ---------------------- 2010-11-11 05:31:04.000 Logging started. ---------------------- 2010-11-11 05:31:04.000 BioCASe protocol used. ---------------------- 2010-11-11 05:31:04.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-11-11 05:31:04.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-11-11 05:31:04.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-11-11 05:31:04.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-11-11 05:31:04.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-11-11 06:31:03.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n crnvwd@oyqlkv.com\n USA\n oaewqdupljs\n USA\n 9014\n USA\n crnvwd@oyqlkv.com\n oaewqdupljs\n oaewqdupljs\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-11-11 06:31:03.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n crnvwd@oyqlkv.com\n USA\n oaewqdupljs\n USA\n 9014\n USA\n crnvwd@oyqlkv.com\n oaewqdupljs\n oaewqdupljs\n\n\n\n \n
'} ---------------------- 2010-11-11 05:31:04.000 Found online debuglevel setting: 1 ---------------------- 2010-11-11 05:31:04.000 Setting debuglevel from 0 to 1 ---------------------- 2010-11-11 05:31:04.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-11-11 05:31:04.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-11-11 05:31:04.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-11-11 05:31:04.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-11-11 05:31:05.000 Pickled file is of latest revision. ---------------------- 2010-11-11 05:31:05.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-11-11 05:31:05.000 Original filter string parsed:
2.4.2 2010-11-11 06:31:03.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA crnvwd@oyqlkv.com USA oaewqdupljs USA 9014 USA crnvwd@oyqlkv.com oaewqdupljs oaewqdupljs
---------------------- 2010-11-11 05:31:05.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = crnvwd@oyqlkv.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE oaewqdupljs ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 9014 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = crnvwd@oyqlkv.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = oaewqdupljs ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE oaewqdupljs )) ---------------------- 2010-11-11 05:31:05.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = crnvwd@oyqlkv.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE oaewqdupljs ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 9014 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = crnvwd@oyqlkv.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = oaewqdupljs ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE oaewqdupljs )) ---------------------- 2010-11-11 05:31:05.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = crnvwd@oyqlkv.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE oaewqdupljs ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 9014 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = crnvwd@oyqlkv.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = oaewqdupljs ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE oaewqdupljs )) ---------------------- 2010-11-11 05:31:05.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = crnvwd@oyqlkv.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE oaewqdupljs ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 9014 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = crnvwd@oyqlkv.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = oaewqdupljs ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE oaewqdupljs )) ---------------------- 2010-11-11 05:31:05.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-11-11 05:31:05.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'crnvwd@oyqlkv.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'oaewqdupljs' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '9014' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'crnvwd@oyqlkv.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'oaewqdupljs' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'oaewqdupljs' ))' ---------------------- 2010-11-11 05:31:05.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "crnvwd@oyqlkv.com" ---------------------- 2010-11-11 05:31:05.000 Setting debuglevel from 1 to 3 **************************************** STERNA **************************************** ### ERROR TIME 2010-11-11 15:47:36.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to STERNA * ### ERROR LOG The Logging Results: ---------------------- 2010-11-11 14:47:36.000 Logging started. ---------------------- 2010-11-11 14:47:36.000 BioCASe protocol used. ---------------------- 2010-11-11 14:47:36.000 Querystring analyzed by pywrapper.cgi directly: {'query': ['*'], 'dsa': ['STERNA']} ---------------------- 2010-11-11 14:47:36.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/STERNA/provider_setup_file.xml ---------------------- 2010-11-11 14:47:36.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-11-11 14:47:36.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-11-11 14:47:36.000 All parameters found in the request: {'query': '*', 'request_string': '*', 'dsa': 'STERNA'} ---------------------- 2010-11-11 14:47:37.000 REQ_PARSING_ERROR: The request could not be parsed. Please check if it is a valid XML document. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 87, in parseRequestString parseString(RequestString, handler) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/__init__.py", line 47, in parseString parser.parse(inpsrc) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 109, in parse xmlreader.IncrementalParser.parse(self, source) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/xmlreader.py", line 123, in parse self.feed(buffer) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 220, in feed self._err_handler.fatalError(exc) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/handler.py", line 38, in fatalError raise exception SAXParseException: :1:0: not well-formed (invalid token) ---------------------- 2010-11-11 14:47:37.000 Serious PyWrapper instance crash Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/www/pywrapper.cgi", line 55, in ? pywInstance.setRequest() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 136, in setRequest self.protocolObj.setRequest(args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 37, in setRequest ProtocolBaseClass.setRequest(self, RequestClass, args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/base_protocol.py", line 41, in setRequest self.requestObj.setRequest(args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 48, in setRequest self.parseRequestString(args['request_string']) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 89, in parseRequestString raise RequestParseError(self.logObj) RequestParseError: ---------------------- 2010-11-11 14:47:37.000 Unknown Request-type : None ---------------------- 2010-11-11 14:47:37.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-11-12 01:31:31.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-11-12 01:01:08.95 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-11-12 00:31:31.000 Logging started. ---------------------- 2010-11-12 00:31:31.000 BioCASe protocol used. ---------------------- 2010-11-12 00:31:31.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-11-12 00:31:31.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-11-12 00:31:31.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-11-12 00:31:31.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-11-12 00:31:31.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-11-12 01:01:08.95\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-11-12 01:01:08.95\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-11-12 01:01:08.95\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-11-12 00:31:31.000 Found online debuglevel setting: 1 ---------------------- 2010-11-12 00:31:31.000 Setting debuglevel from 0 to 1 ---------------------- 2010-11-12 00:31:31.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-11-12 00:31:32.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-11-12 00:31:32.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-11-12 00:31:32.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-11-12 00:31:32.000 Pickled file is of latest revision. ---------------------- 2010-11-12 00:31:32.000 Original filter string parsed:
0.1 2010-11-12 01:01:08.95 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-11-12 00:31:32.000 Filter created: None ---------------------- 2010-11-12 00:31:32.000 Compressed filter used: None ---------------------- 2010-11-12 00:31:32.000 Counting total matched records with filter=None ---------------------- 2010-11-12 00:31:32.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-11-12 00:31:32.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-11-12 16:10:33.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-11-12 16:10:33.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA dhmcpr@yqygso.com USA nwcmlz USA 427748 USA dhmcpr@yqygso.com nwcmlz nwcmlz
### ERROR LOG The Logging Results: ---------------------- 2010-11-12 15:10:33.000 Logging started. ---------------------- 2010-11-12 15:10:33.000 BioCASe protocol used. ---------------------- 2010-11-12 15:10:33.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-11-12 15:10:33.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-11-12 15:10:33.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-11-12 15:10:33.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-11-12 15:10:33.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-11-12 16:10:33.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n dhmcpr@yqygso.com\n USA\n nwcmlz\n USA\n 427748\n USA\n dhmcpr@yqygso.com\n nwcmlz\n nwcmlz\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-11-12 16:10:33.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n dhmcpr@yqygso.com\n USA\n nwcmlz\n USA\n 427748\n USA\n dhmcpr@yqygso.com\n nwcmlz\n nwcmlz\n\n\n\n \n
'} ---------------------- 2010-11-12 15:10:33.000 Found online debuglevel setting: 1 ---------------------- 2010-11-12 15:10:33.000 Setting debuglevel from 0 to 1 ---------------------- 2010-11-12 15:10:33.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-11-12 15:10:34.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-11-12 15:10:34.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-11-12 15:10:34.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-11-12 15:10:34.000 Pickled file is of latest revision. ---------------------- 2010-11-12 15:10:34.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-11-12 15:10:34.000 Original filter string parsed:
2.4.2 2010-11-12 16:10:33.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA dhmcpr@yqygso.com USA nwcmlz USA 427748 USA dhmcpr@yqygso.com nwcmlz nwcmlz
---------------------- 2010-11-12 15:10:34.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = dhmcpr@yqygso.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE nwcmlz ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 427748 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = dhmcpr@yqygso.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = nwcmlz ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE nwcmlz )) ---------------------- 2010-11-12 15:10:34.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = dhmcpr@yqygso.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE nwcmlz ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 427748 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = dhmcpr@yqygso.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = nwcmlz ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE nwcmlz )) ---------------------- 2010-11-12 15:10:34.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = dhmcpr@yqygso.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE nwcmlz ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 427748 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = dhmcpr@yqygso.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = nwcmlz ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE nwcmlz )) ---------------------- 2010-11-12 15:10:34.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = dhmcpr@yqygso.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE nwcmlz ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 427748 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = dhmcpr@yqygso.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = nwcmlz ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE nwcmlz )) ---------------------- 2010-11-12 15:10:34.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-11-12 15:10:34.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'dhmcpr@yqygso.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'nwcmlz' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '427748' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'dhmcpr@yqygso.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'nwcmlz' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'nwcmlz' ))' ---------------------- 2010-11-12 15:10:34.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "dhmcpr@yqygso.com" ---------------------- 2010-11-12 15:10:34.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-11-13 08:01:24.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-11-13 08:01:24.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString DGKDdtHNEMDcQk vsbedl@hbxmla.com qlxUKiLilyuaLROSuR muznacqk USA 4910 aYEo4g <a href="http://dwdpapfgilol.com/">dwdpapfgilol</a>, [url=http://smqqymxvczdj.com/]smqqymxvczdj[/url], [link=http://mtaqhwkbjioe.com/]mtaqhwkbjioe[/link], http://fjikmdksvlqu.com/ vsbedl@hbxmla.com vsbedl@hbxmla.com muznacqk
### ERROR LOG The Logging Results: ---------------------- 2010-11-13 07:01:24.000 Logging started. ---------------------- 2010-11-13 07:01:24.000 BioCASe protocol used. ---------------------- 2010-11-13 07:01:24.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-11-13 07:01:24.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-11-13 07:01:24.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-11-13 07:01:24.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-11-13 07:01:24.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-11-13 08:01:24.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n DGKDdtHNEMDcQk\n vsbedl@hbxmla.com\n qlxUKiLilyuaLROSuR\n muznacqk\n USA\n 4910\n aYEo4g <a href="http://dwdpapfgilol.com/">dwdpapfgilol</a>, [url=http://smqqymxvczdj.com/]smqqymxvczdj[/url], [link=http://mtaqhwkbjioe.com/]mtaqhwkbjioe[/link], http://fjikmdksvlqu.com/\n vsbedl@hbxmla.com\n vsbedl@hbxmla.com\n muznacqk\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-11-13 08:01:24.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n DGKDdtHNEMDcQk\n vsbedl@hbxmla.com\n qlxUKiLilyuaLROSuR\n muznacqk\n USA\n 4910\n aYEo4g <a href="http://dwdpapfgilol.com/">dwdpapfgilol</a>, [url=http://smqqymxvczdj.com/]smqqymxvczdj[/url], [link=http://mtaqhwkbjioe.com/]mtaqhwkbjioe[/link], http://fjikmdksvlqu.com/\n vsbedl@hbxmla.com\n vsbedl@hbxmla.com\n muznacqk\n\n\n\n \n
'} ---------------------- 2010-11-13 07:01:24.000 Found online debuglevel setting: 1 ---------------------- 2010-11-13 07:01:24.000 Setting debuglevel from 0 to 1 ---------------------- 2010-11-13 07:01:24.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-11-13 07:01:25.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-11-13 07:01:25.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-11-13 07:01:25.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-11-13 07:01:25.000 Pickled file is of latest revision. ---------------------- 2010-11-13 07:01:25.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-11-13 07:01:25.000 Original filter string parsed:
2.4.2 2010-11-13 08:01:24.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString DGKDdtHNEMDcQk vsbedl@hbxmla.com qlxUKiLilyuaLROSuR muznacqk USA 4910 aYEo4g <a href="http://dwdpapfgilol.com/">dwdpapfgilol</a>, [url=http://smqqymxvczdj.com/]smqqymxvczdj[/url], [link=http://mtaqhwkbjioe.com/]mtaqhwkbjioe[/link], http://fjikmdksvlqu.com/ vsbedl@hbxmla.com vsbedl@hbxmla.com muznacqk
---------------------- 2010-11-13 07:01:25.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE DGKDdtHNEMDcQk ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = vsbedl@hbxmla.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE qlxUKiLilyuaLROSuR ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE muznacqk ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 4910 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE aYEo4g dwdpapfgilol, [url=http://smqqymxvczdj.com/]smqqymxvczdj[/url], [link=http://mtaqhwkbjioe.com/]mtaqhwkbjioe[/link], http://fjikmdksvlqu.com/ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = vsbedl@hbxmla.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = vsbedl@hbxmla.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE muznacqk )) ---------------------- 2010-11-13 07:01:25.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE DGKDdtHNEMDcQk ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = vsbedl@hbxmla.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE qlxUKiLilyuaLROSuR ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE muznacqk ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 4910 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE aYEo4g dwdpapfgilol, [url=http://smqqymxvczdj.com/]smqqymxvczdj[/url], [link=http://mtaqhwkbjioe.com/]mtaqhwkbjioe[/link], http://fjikmdksvlqu.com/ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = vsbedl@hbxmla.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = vsbedl@hbxmla.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE muznacqk )) ---------------------- 2010-11-13 07:01:25.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE DGKDdtHNEMDcQk ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = vsbedl@hbxmla.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE qlxUKiLilyuaLROSuR ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE muznacqk ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 4910 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE aYEo4g dwdpapfgilol, [url=http://smqqymxvczdj.com/]smqqymxvczdj[/url], [link=http://mtaqhwkbjioe.com/]mtaqhwkbjioe[/link], http://fjikmdksvlqu.com/ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = vsbedl@hbxmla.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = vsbedl@hbxmla.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE muznacqk )) ---------------------- 2010-11-13 07:01:25.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE DGKDdtHNEMDcQk ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = vsbedl@hbxmla.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE qlxUKiLilyuaLROSuR ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE muznacqk ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 4910 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE aYEo4g dwdpapfgilol, [url=http://smqqymxvczdj.com/]smqqymxvczdj[/url], [link=http://mtaqhwkbjioe.com/]mtaqhwkbjioe[/link], http://fjikmdksvlqu.com/ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = vsbedl@hbxmla.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = vsbedl@hbxmla.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE muznacqk )) ---------------------- 2010-11-13 07:01:25.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-11-13 07:01:25.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'DGKDdtHNEMDcQk' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'vsbedl@hbxmla.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'qlxUKiLilyuaLROSuR' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'muznacqk' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '4910' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'aYEo4g dwdpapfgilol, [url=http://smqqymxvczdj.com/]smqqymxvczdj[/url], [link=http://mtaqhwkbjioe.com/]mtaqhwkbjioe[/link], http://fjikmdksvlqu.com/' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'vsbedl@hbxmla.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'vsbedl@hbxmla.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'muznacqk' ))' ---------------------- 2010-11-13 07:01:25.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "vsbedl@hbxmla.com" ---------------------- 2010-11-13 07:01:25.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2010-11-13 14:04:49.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2010-11-13 13:04:49.000 Logging started. ---------------------- 2010-11-13 13:04:49.000 BioCASe protocol used. ---------------------- 2010-11-13 13:04:49.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2010-11-13 13:04:49.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2010-11-13 13:04:49.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-11-13 13:04:50.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2010-11-13 13:04:50.000 Unknown request type! Default to capabilities. ---------------------- 2010-11-13 13:04:50.000 Destination hostname could not be determined ---------------------- 2010-11-13 13:04:50.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2010-11-13 13:04:50.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-11-13 13:04:50.000 Pickled file is of latest revision. ---------------------- 2010-11-13 13:04:50.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2010-11-13 13:04:50.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2010-11-13 13:04:50.000 Reset CMF convenience cache data hash. ---------------------- 2010-11-13 13:04:50.000 Loading CMF from the source XML file. ---------------------- 2010-11-13 13:04:50.000 CMF Version 2.1 detected. ---------------------- 2010-11-13 13:04:50.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2010-11-13 13:04:50.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2010-11-13 13:04:50.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-11-13 13:04:50.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-11-13 13:04:50.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-11-13 17:35:10.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-11-13 17:35:10.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA ttsxno@kvbtvx.com USA oadwwn USA 4314 USA ttsxno@kvbtvx.com oadwwn oadwwn
### ERROR LOG The Logging Results: ---------------------- 2010-11-13 16:35:10.000 Logging started. ---------------------- 2010-11-13 16:35:10.000 BioCASe protocol used. ---------------------- 2010-11-13 16:35:10.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-11-13 16:35:10.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-11-13 16:35:10.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-11-13 16:35:11.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-11-13 16:35:11.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-11-13 17:35:10.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n ttsxno@kvbtvx.com\n USA\n oadwwn\n USA\n 4314\n USA\n ttsxno@kvbtvx.com\n oadwwn\n oadwwn\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-11-13 17:35:10.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n ttsxno@kvbtvx.com\n USA\n oadwwn\n USA\n 4314\n USA\n ttsxno@kvbtvx.com\n oadwwn\n oadwwn\n\n\n\n \n
'} ---------------------- 2010-11-13 16:35:11.000 Found online debuglevel setting: 1 ---------------------- 2010-11-13 16:35:11.000 Setting debuglevel from 0 to 1 ---------------------- 2010-11-13 16:35:11.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-11-13 16:35:11.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-11-13 16:35:11.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-11-13 16:35:11.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-11-13 16:35:11.000 Pickled file is of latest revision. ---------------------- 2010-11-13 16:35:11.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-11-13 16:35:11.000 Original filter string parsed:
2.4.2 2010-11-13 17:35:10.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA ttsxno@kvbtvx.com USA oadwwn USA 4314 USA ttsxno@kvbtvx.com oadwwn oadwwn
---------------------- 2010-11-13 16:35:11.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ttsxno@kvbtvx.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE oadwwn ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 4314 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ttsxno@kvbtvx.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = oadwwn ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE oadwwn )) ---------------------- 2010-11-13 16:35:11.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ttsxno@kvbtvx.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE oadwwn ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 4314 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ttsxno@kvbtvx.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = oadwwn ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE oadwwn )) ---------------------- 2010-11-13 16:35:11.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ttsxno@kvbtvx.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE oadwwn ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 4314 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ttsxno@kvbtvx.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = oadwwn ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE oadwwn )) ---------------------- 2010-11-13 16:35:11.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ttsxno@kvbtvx.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE oadwwn ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 4314 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ttsxno@kvbtvx.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = oadwwn ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE oadwwn )) ---------------------- 2010-11-13 16:35:11.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-11-13 16:35:11.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'ttsxno@kvbtvx.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'oadwwn' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '4314' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'ttsxno@kvbtvx.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'oadwwn' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'oadwwn' ))' ---------------------- 2010-11-13 16:35:11.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "ttsxno@kvbtvx.com" ---------------------- 2010-11-13 16:35:11.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-11-14 10:34:51.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-11-14 10:34:50.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA eoukdi@mttvqo.com USA furkmkzesjp USA 22471 USA eoukdi@mttvqo.com furkmkzesjp furkmkzesjp
### ERROR LOG The Logging Results: ---------------------- 2010-11-14 09:34:51.000 Logging started. ---------------------- 2010-11-14 09:34:51.000 BioCASe protocol used. ---------------------- 2010-11-14 09:34:51.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-11-14 09:34:51.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-11-14 09:34:51.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-11-14 09:34:51.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-11-14 09:34:51.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-11-14 10:34:50.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n eoukdi@mttvqo.com\n USA\n furkmkzesjp\n USA\n 22471\n USA\n eoukdi@mttvqo.com\n furkmkzesjp\n furkmkzesjp\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-11-14 10:34:50.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n eoukdi@mttvqo.com\n USA\n furkmkzesjp\n USA\n 22471\n USA\n eoukdi@mttvqo.com\n furkmkzesjp\n furkmkzesjp\n\n\n\n \n
'} ---------------------- 2010-11-14 09:34:51.000 Found online debuglevel setting: 1 ---------------------- 2010-11-14 09:34:51.000 Setting debuglevel from 0 to 1 ---------------------- 2010-11-14 09:34:51.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-11-14 09:34:51.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-11-14 09:34:51.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-11-14 09:34:51.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-11-14 09:34:51.000 Pickled file is of latest revision. ---------------------- 2010-11-14 09:34:51.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-11-14 09:34:51.000 Original filter string parsed:
2.4.2 2010-11-14 10:34:50.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA eoukdi@mttvqo.com USA furkmkzesjp USA 22471 USA eoukdi@mttvqo.com furkmkzesjp furkmkzesjp
---------------------- 2010-11-14 09:34:51.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = eoukdi@mttvqo.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE furkmkzesjp ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 22471 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = eoukdi@mttvqo.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = furkmkzesjp ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE furkmkzesjp )) ---------------------- 2010-11-14 09:34:51.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = eoukdi@mttvqo.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE furkmkzesjp ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 22471 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = eoukdi@mttvqo.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = furkmkzesjp ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE furkmkzesjp )) ---------------------- 2010-11-14 09:34:51.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = eoukdi@mttvqo.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE furkmkzesjp ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 22471 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = eoukdi@mttvqo.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = furkmkzesjp ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE furkmkzesjp )) ---------------------- 2010-11-14 09:34:51.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = eoukdi@mttvqo.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE furkmkzesjp ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 22471 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = eoukdi@mttvqo.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = furkmkzesjp ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE furkmkzesjp )) ---------------------- 2010-11-14 09:34:51.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-11-14 09:34:51.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'eoukdi@mttvqo.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'furkmkzesjp' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '22471' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'eoukdi@mttvqo.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'furkmkzesjp' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'furkmkzesjp' ))' ---------------------- 2010-11-14 09:34:51.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "eoukdi@mttvqo.com" ---------------------- 2010-11-14 09:34:51.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-11-16 03:51:07.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-11-16 03:51:07.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString cUwPwsfLcR opmfqy@uhkiwf.com QoMdwptnz qfcpvjlwn USA 415211 SsL8jl <a href="http://oupdkvamchgi.com/">oupdkvamchgi</a>, [url=http://bcvytnurqwhd.com/]bcvytnurqwhd[/url], [link=http://vbutgckvgmva.com/]vbutgckvgmva[/link], http://vmglaarejujq.com/ opmfqy@uhkiwf.com opmfqy@uhkiwf.com qfcpvjlwn
### ERROR LOG The Logging Results: ---------------------- 2010-11-16 02:51:07.000 Logging started. ---------------------- 2010-11-16 02:51:07.000 BioCASe protocol used. ---------------------- 2010-11-16 02:51:07.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-11-16 02:51:07.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-11-16 02:51:07.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-11-16 02:51:07.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-11-16 02:51:07.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-11-16 03:51:07.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n cUwPwsfLcR\n opmfqy@uhkiwf.com\n QoMdwptnz\n qfcpvjlwn\n USA\n 415211\n SsL8jl <a href="http://oupdkvamchgi.com/">oupdkvamchgi</a>, [url=http://bcvytnurqwhd.com/]bcvytnurqwhd[/url], [link=http://vbutgckvgmva.com/]vbutgckvgmva[/link], http://vmglaarejujq.com/\n opmfqy@uhkiwf.com\n opmfqy@uhkiwf.com\n qfcpvjlwn\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-11-16 03:51:07.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n cUwPwsfLcR\n opmfqy@uhkiwf.com\n QoMdwptnz\n qfcpvjlwn\n USA\n 415211\n SsL8jl <a href="http://oupdkvamchgi.com/">oupdkvamchgi</a>, [url=http://bcvytnurqwhd.com/]bcvytnurqwhd[/url], [link=http://vbutgckvgmva.com/]vbutgckvgmva[/link], http://vmglaarejujq.com/\n opmfqy@uhkiwf.com\n opmfqy@uhkiwf.com\n qfcpvjlwn\n\n\n\n \n
'} ---------------------- 2010-11-16 02:51:07.000 Found online debuglevel setting: 1 ---------------------- 2010-11-16 02:51:07.000 Setting debuglevel from 0 to 1 ---------------------- 2010-11-16 02:51:07.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-11-16 02:51:08.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-11-16 02:51:08.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-11-16 02:51:08.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-11-16 02:51:08.000 Pickled file is of latest revision. ---------------------- 2010-11-16 02:51:08.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-11-16 02:51:08.000 Original filter string parsed:
2.4.2 2010-11-16 03:51:07.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString cUwPwsfLcR opmfqy@uhkiwf.com QoMdwptnz qfcpvjlwn USA 415211 SsL8jl <a href="http://oupdkvamchgi.com/">oupdkvamchgi</a>, [url=http://bcvytnurqwhd.com/]bcvytnurqwhd[/url], [link=http://vbutgckvgmva.com/]vbutgckvgmva[/link], http://vmglaarejujq.com/ opmfqy@uhkiwf.com opmfqy@uhkiwf.com qfcpvjlwn
---------------------- 2010-11-16 02:51:08.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE cUwPwsfLcR ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = opmfqy@uhkiwf.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE QoMdwptnz ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE qfcpvjlwn ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 415211 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE SsL8jl oupdkvamchgi, [url=http://bcvytnurqwhd.com/]bcvytnurqwhd[/url], [link=http://vbutgckvgmva.com/]vbutgckvgmva[/link], http://vmglaarejujq.com/ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = opmfqy@uhkiwf.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = opmfqy@uhkiwf.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE qfcpvjlwn )) ---------------------- 2010-11-16 02:51:08.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE cUwPwsfLcR ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = opmfqy@uhkiwf.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE QoMdwptnz ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE qfcpvjlwn ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 415211 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE SsL8jl oupdkvamchgi, [url=http://bcvytnurqwhd.com/]bcvytnurqwhd[/url], [link=http://vbutgckvgmva.com/]vbutgckvgmva[/link], http://vmglaarejujq.com/ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = opmfqy@uhkiwf.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = opmfqy@uhkiwf.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE qfcpvjlwn )) ---------------------- 2010-11-16 02:51:08.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE cUwPwsfLcR ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = opmfqy@uhkiwf.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE QoMdwptnz ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE qfcpvjlwn ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 415211 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE SsL8jl oupdkvamchgi, [url=http://bcvytnurqwhd.com/]bcvytnurqwhd[/url], [link=http://vbutgckvgmva.com/]vbutgckvgmva[/link], http://vmglaarejujq.com/ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = opmfqy@uhkiwf.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = opmfqy@uhkiwf.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE qfcpvjlwn )) ---------------------- 2010-11-16 02:51:08.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE cUwPwsfLcR ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = opmfqy@uhkiwf.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE QoMdwptnz ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE qfcpvjlwn ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 415211 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE SsL8jl oupdkvamchgi, [url=http://bcvytnurqwhd.com/]bcvytnurqwhd[/url], [link=http://vbutgckvgmva.com/]vbutgckvgmva[/link], http://vmglaarejujq.com/ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = opmfqy@uhkiwf.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = opmfqy@uhkiwf.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE qfcpvjlwn )) ---------------------- 2010-11-16 02:51:08.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-11-16 02:51:08.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'cUwPwsfLcR' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'opmfqy@uhkiwf.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'QoMdwptnz' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'qfcpvjlwn' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '415211' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'SsL8jl oupdkvamchgi, [url=http://bcvytnurqwhd.com/]bcvytnurqwhd[/url], [link=http://vbutgckvgmva.com/]vbutgckvgmva[/link], http://vmglaarejujq.com/' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'opmfqy@uhkiwf.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'opmfqy@uhkiwf.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'qfcpvjlwn' ))' ---------------------- 2010-11-16 02:51:08.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "opmfqy@uhkiwf.com" ---------------------- 2010-11-16 02:51:08.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-11-17 03:48:55.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-11-17 03:48:55.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString pLIfwxuSVNA ysmgwm@yuhock.com vcUYuKvrgUVDisOEXq mggihwhbmws USA 56400 zdcSF ysmgwm@yuhock.com ysmgwm@yuhock.com mggihwhbmws
### ERROR LOG The Logging Results: ---------------------- 2010-11-17 02:48:55.000 Logging started. ---------------------- 2010-11-17 02:48:55.000 BioCASe protocol used. ---------------------- 2010-11-17 02:48:55.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-11-17 02:48:55.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-11-17 02:48:55.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-11-17 02:48:55.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-11-17 02:48:55.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-11-17 03:48:55.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n pLIfwxuSVNA\n ysmgwm@yuhock.com\n vcUYuKvrgUVDisOEXq\n mggihwhbmws\n USA\n 56400\n zdcSF\n ysmgwm@yuhock.com\n ysmgwm@yuhock.com\n mggihwhbmws\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-11-17 03:48:55.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n pLIfwxuSVNA\n ysmgwm@yuhock.com\n vcUYuKvrgUVDisOEXq\n mggihwhbmws\n USA\n 56400\n zdcSF\n ysmgwm@yuhock.com\n ysmgwm@yuhock.com\n mggihwhbmws\n\n\n\n \n
'} ---------------------- 2010-11-17 02:48:55.000 Found online debuglevel setting: 1 ---------------------- 2010-11-17 02:48:55.000 Setting debuglevel from 0 to 1 ---------------------- 2010-11-17 02:48:55.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-11-17 02:48:56.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-11-17 02:48:56.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-11-17 02:48:56.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-11-17 02:48:56.000 Pickled file is of latest revision. ---------------------- 2010-11-17 02:48:56.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-11-17 02:48:56.000 Original filter string parsed:
2.4.2 2010-11-17 03:48:55.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString pLIfwxuSVNA ysmgwm@yuhock.com vcUYuKvrgUVDisOEXq mggihwhbmws USA 56400 zdcSF ysmgwm@yuhock.com ysmgwm@yuhock.com mggihwhbmws
---------------------- 2010-11-17 02:48:56.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE pLIfwxuSVNA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ysmgwm@yuhock.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE vcUYuKvrgUVDisOEXq ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE mggihwhbmws ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 56400 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE zdcSF ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ysmgwm@yuhock.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ysmgwm@yuhock.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE mggihwhbmws )) ---------------------- 2010-11-17 02:48:56.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE pLIfwxuSVNA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ysmgwm@yuhock.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE vcUYuKvrgUVDisOEXq ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE mggihwhbmws ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 56400 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE zdcSF ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ysmgwm@yuhock.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ysmgwm@yuhock.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE mggihwhbmws )) ---------------------- 2010-11-17 02:48:56.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE pLIfwxuSVNA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ysmgwm@yuhock.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE vcUYuKvrgUVDisOEXq ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE mggihwhbmws ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 56400 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE zdcSF ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ysmgwm@yuhock.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ysmgwm@yuhock.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE mggihwhbmws )) ---------------------- 2010-11-17 02:48:56.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE pLIfwxuSVNA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ysmgwm@yuhock.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE vcUYuKvrgUVDisOEXq ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE mggihwhbmws ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 56400 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE zdcSF ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ysmgwm@yuhock.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ysmgwm@yuhock.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE mggihwhbmws )) ---------------------- 2010-11-17 02:48:56.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-11-17 02:48:56.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'pLIfwxuSVNA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'ysmgwm@yuhock.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'vcUYuKvrgUVDisOEXq' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'mggihwhbmws' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '56400' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'zdcSF' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'ysmgwm@yuhock.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'ysmgwm@yuhock.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'mggihwhbmws' ))' ---------------------- 2010-11-17 02:48:56.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "ysmgwm@yuhock.com" ---------------------- 2010-11-17 02:48:56.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-11-17 04:06:44.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-11-17 04:06:44.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA gidwwh@kjyxtj.com USA svqignca USA 250384 USA gidwwh@kjyxtj.com svqignca svqignca
### ERROR LOG The Logging Results: ---------------------- 2010-11-17 03:06:44.000 Logging started. ---------------------- 2010-11-17 03:06:44.000 BioCASe protocol used. ---------------------- 2010-11-17 03:06:44.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-11-17 03:06:44.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-11-17 03:06:44.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-11-17 03:06:45.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-11-17 03:06:45.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-11-17 04:06:44.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n gidwwh@kjyxtj.com\n USA\n svqignca\n USA\n 250384\n USA\n gidwwh@kjyxtj.com\n svqignca\n svqignca\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-11-17 04:06:44.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n gidwwh@kjyxtj.com\n USA\n svqignca\n USA\n 250384\n USA\n gidwwh@kjyxtj.com\n svqignca\n svqignca\n\n\n\n \n
'} ---------------------- 2010-11-17 03:06:45.000 Found online debuglevel setting: 1 ---------------------- 2010-11-17 03:06:45.000 Setting debuglevel from 0 to 1 ---------------------- 2010-11-17 03:06:45.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-11-17 03:06:45.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-11-17 03:06:45.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-11-17 03:06:45.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-11-17 03:06:45.000 Pickled file is of latest revision. ---------------------- 2010-11-17 03:06:45.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-11-17 03:06:45.000 Original filter string parsed:
2.4.2 2010-11-17 04:06:44.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA gidwwh@kjyxtj.com USA svqignca USA 250384 USA gidwwh@kjyxtj.com svqignca svqignca
---------------------- 2010-11-17 03:06:45.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = gidwwh@kjyxtj.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE svqignca ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 250384 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = gidwwh@kjyxtj.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = svqignca ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE svqignca )) ---------------------- 2010-11-17 03:06:45.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = gidwwh@kjyxtj.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE svqignca ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 250384 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = gidwwh@kjyxtj.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = svqignca ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE svqignca )) ---------------------- 2010-11-17 03:06:45.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = gidwwh@kjyxtj.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE svqignca ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 250384 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = gidwwh@kjyxtj.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = svqignca ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE svqignca )) ---------------------- 2010-11-17 03:06:45.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = gidwwh@kjyxtj.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE svqignca ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 250384 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = gidwwh@kjyxtj.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = svqignca ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE svqignca )) ---------------------- 2010-11-17 03:06:45.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-11-17 03:06:45.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'gidwwh@kjyxtj.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'svqignca' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '250384' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'gidwwh@kjyxtj.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'svqignca' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'svqignca' ))' ---------------------- 2010-11-17 03:06:45.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "gidwwh@kjyxtj.com" ---------------------- 2010-11-17 03:06:45.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-11-19 01:33:06.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-11-19 01:03:05.98 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-11-19 00:33:06.000 Logging started. ---------------------- 2010-11-19 00:33:06.000 BioCASe protocol used. ---------------------- 2010-11-19 00:33:06.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-11-19 00:33:06.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-11-19 00:33:06.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-11-19 00:33:06.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-11-19 00:33:06.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-11-19 01:03:05.98\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-11-19 01:03:05.98\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-11-19 01:03:05.98\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-11-19 00:33:06.000 Found online debuglevel setting: 1 ---------------------- 2010-11-19 00:33:06.000 Setting debuglevel from 0 to 1 ---------------------- 2010-11-19 00:33:06.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-11-19 00:33:07.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-11-19 00:33:07.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-11-19 00:33:07.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-11-19 00:33:07.000 Pickled file is of latest revision. ---------------------- 2010-11-19 00:33:07.000 Original filter string parsed:
0.1 2010-11-19 01:03:05.98 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-11-19 00:33:07.000 Filter created: None ---------------------- 2010-11-19 00:33:07.000 Compressed filter used: None ---------------------- 2010-11-19 00:33:07.000 Counting total matched records with filter=None ---------------------- 2010-11-19 00:33:07.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-11-19 00:33:07.000 Setting debuglevel from 1 to 3 **************************************** HERPNETRMCA **************************************** ### ERROR TIME 2010-11-19 15:42:46.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to herpNETRMCA
2.4.2 2010-11-19 15:42:46.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString *
### ERROR LOG The Logging Results: ---------------------- 2010-11-19 14:42:46.000 Logging started. ---------------------- 2010-11-19 14:42:46.000 BioCASe protocol used. ---------------------- 2010-11-19 14:42:46.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['herpNETRMCA']} ---------------------- 2010-11-19 14:42:46.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/herpNETRMCA/provider_setup_file.xml ---------------------- 2010-11-19 14:42:46.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-11-19 14:42:46.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-11-19 14:42:46.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-11-19 15:42:46.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n*\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-11-19 15:42:46.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n*\n\n\n \n
'} ---------------------- 2010-11-19 14:42:46.000 Found online debuglevel setting: 1 ---------------------- 2010-11-19 14:42:46.000 Setting debuglevel from 0 to 1 ---------------------- 2010-11-19 14:42:46.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-11-19 14:42:47.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-11-19 14:42:47.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/herpNETRMCA/cmf_ABCD_2 06 .xml' ---------------------- 2010-11-19 14:42:47.000 Load the pickled CMF object '.cmf_ABCD_2 06 .xml.pick' ---------------------- 2010-11-19 14:42:47.000 Pickled file is of latest revision. ---------------------- 2010-11-19 14:42:47.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-11-19 14:42:47.000 Original filter string parsed:
2.4.2 2010-11-19 15:42:46.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString *
---------------------- 2010-11-19 14:42:47.000 Filter created: ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE * ) ---------------------- 2010-11-19 14:42:47.000 Compressed filter used: ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE * ) ---------------------- 2010-11-19 14:42:47.000 The scan request contained a hidden filter which was integrated: ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE * ) ---------------------- 2010-11-19 14:42:47.000 Final fully compressed filter: ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE * ) ---------------------- 2010-11-19 14:42:47.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-11-19 14:42:47.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "v_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "v_abcd2v06manytomanyidentifications" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") WHERE ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE '%' )' ---------------------- 2010-11-19 14:42:47.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: relation "v_abcd2v06manytomanyidentifications" does not exist ---------------------- 2010-11-19 14:42:47.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-11-22 05:24:39.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-11-22 05:24:38.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString EJcfAADFmLV SBfqAyvnQuSSEcO VtMObdzFBhlh eiqldhaex SNFdapaSkcwdWgtBt GVmtLCxLK AoehDKXZqvGQrae NaeneHumd ipmkhUwywG eiqldhaex
### ERROR LOG The Logging Results: ---------------------- 2010-11-22 04:24:39.000 Logging started. ---------------------- 2010-11-22 04:24:39.000 BioCASe protocol used. ---------------------- 2010-11-22 04:24:39.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-11-22 04:24:39.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-11-22 04:24:39.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-11-22 04:24:39.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-11-22 04:24:39.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-11-22 05:24:38.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n EJcfAADFmLV\n SBfqAyvnQuSSEcO\n VtMObdzFBhlh\n eiqldhaex\n SNFdapaSkcwdWgtBt\n GVmtLCxLK\n AoehDKXZqvGQrae\n NaeneHumd\n ipmkhUwywG\n eiqldhaex\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-11-22 05:24:38.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n EJcfAADFmLV\n SBfqAyvnQuSSEcO\n VtMObdzFBhlh\n eiqldhaex\n SNFdapaSkcwdWgtBt\n GVmtLCxLK\n AoehDKXZqvGQrae\n NaeneHumd\n ipmkhUwywG\n eiqldhaex\n\n\n\n \n
'} ---------------------- 2010-11-22 04:24:39.000 Found online debuglevel setting: 1 ---------------------- 2010-11-22 04:24:39.000 Setting debuglevel from 0 to 1 ---------------------- 2010-11-22 04:24:39.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-11-22 04:24:39.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-11-22 04:24:39.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-11-22 04:24:39.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-11-22 04:24:40.000 Pickled file is of latest revision. ---------------------- 2010-11-22 04:24:40.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-11-22 04:24:40.000 Original filter string parsed:
2.4.2 2010-11-22 05:24:38.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString EJcfAADFmLV SBfqAyvnQuSSEcO VtMObdzFBhlh eiqldhaex SNFdapaSkcwdWgtBt GVmtLCxLK AoehDKXZqvGQrae NaeneHumd ipmkhUwywG eiqldhaex
---------------------- 2010-11-22 04:24:40.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE EJcfAADFmLV ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = SBfqAyvnQuSSEcO ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE VtMObdzFBhlh ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE eiqldhaex ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE SNFdapaSkcwdWgtBt ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE GVmtLCxLK ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE AoehDKXZqvGQrae ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = NaeneHumd ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ipmkhUwywG ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE eiqldhaex )) ---------------------- 2010-11-22 04:24:40.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE EJcfAADFmLV ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = SBfqAyvnQuSSEcO ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE VtMObdzFBhlh ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE eiqldhaex ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE SNFdapaSkcwdWgtBt ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE GVmtLCxLK ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE AoehDKXZqvGQrae ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = NaeneHumd ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ipmkhUwywG ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE eiqldhaex )) ---------------------- 2010-11-22 04:24:40.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE EJcfAADFmLV ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = SBfqAyvnQuSSEcO ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE VtMObdzFBhlh ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE eiqldhaex ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE SNFdapaSkcwdWgtBt ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE GVmtLCxLK ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE AoehDKXZqvGQrae ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = NaeneHumd ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ipmkhUwywG ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE eiqldhaex )) ---------------------- 2010-11-22 04:24:40.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE EJcfAADFmLV ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = SBfqAyvnQuSSEcO ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE VtMObdzFBhlh ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE eiqldhaex ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE SNFdapaSkcwdWgtBt ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE GVmtLCxLK ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE AoehDKXZqvGQrae ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = NaeneHumd ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ipmkhUwywG ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE eiqldhaex )) ---------------------- 2010-11-22 04:24:40.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-11-22 04:24:40.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'EJcfAADFmLV' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'SBfqAyvnQuSSEcO' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'VtMObdzFBhlh' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'eiqldhaex' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'SNFdapaSkcwdWgtBt' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'GVmtLCxLK' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'AoehDKXZqvGQrae' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'NaeneHumd' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'ipmkhUwywG' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'eiqldhaex' ))' ---------------------- 2010-11-22 04:24:40.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "SBfqAyvnQuSSEcO" ---------------------- 2010-11-22 04:24:40.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2010-11-25 18:34:29.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2010-11-25 17:34:29.000 Logging started. ---------------------- 2010-11-25 17:34:29.000 BioCASe protocol used. ---------------------- 2010-11-25 17:34:29.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2010-11-25 17:34:29.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2010-11-25 17:34:29.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-11-25 17:34:29.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2010-11-25 17:34:29.000 Unknown request type! Default to capabilities. ---------------------- 2010-11-25 17:34:29.000 Destination hostname could not be determined ---------------------- 2010-11-25 17:34:29.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2010-11-25 17:34:29.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-11-25 17:34:29.000 Pickled file is of latest revision. ---------------------- 2010-11-25 17:34:29.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2010-11-25 17:34:29.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2010-11-25 17:34:29.000 Reset CMF convenience cache data hash. ---------------------- 2010-11-25 17:34:29.000 Loading CMF from the source XML file. ---------------------- 2010-11-25 17:34:29.000 CMF Version 2.1 detected. ---------------------- 2010-11-25 17:34:30.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2010-11-25 17:34:30.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2010-11-25 17:34:30.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-11-25 17:34:30.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-11-25 17:34:30.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2010-11-25 18:34:44.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2010-11-25 17:34:44.000 Logging started. ---------------------- 2010-11-25 17:34:44.000 BioCASe protocol used. ---------------------- 2010-11-25 17:34:44.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2010-11-25 17:34:44.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2010-11-25 17:34:44.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-11-25 17:34:44.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2010-11-25 17:34:44.000 Unknown request type! Default to capabilities. ---------------------- 2010-11-25 17:34:44.000 Destination hostname could not be determined ---------------------- 2010-11-25 17:34:44.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2010-11-25 17:34:44.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-11-25 17:34:44.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-11-25 17:34:44.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2010-11-25 17:34:44.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-11-25 17:34:44.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-11-25 17:34:44.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-11-25 18:34:55.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2010-11-25 17:34:55.000 Logging started. ---------------------- 2010-11-25 17:34:55.000 BioCASe protocol used. ---------------------- 2010-11-25 17:34:55.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-11-25 17:34:55.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-11-25 17:34:55.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-11-25 17:34:55.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2010-11-25 17:34:55.000 Unknown request type! Default to capabilities. ---------------------- 2010-11-25 17:34:55.000 Destination hostname could not be determined ---------------------- 2010-11-25 17:34:55.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2010-11-25 17:34:55.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2010-11-25 17:34:55.000 Reset CMF convenience cache data hash. ---------------------- 2010-11-25 17:34:55.000 Loading CMF from the source XML file. ---------------------- 2010-11-25 17:34:55.000 CMF Version 2.1 detected. ---------------------- 2010-11-25 17:34:55.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2010-11-25 17:34:55.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2010-11-25 17:34:55.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-11-25 17:34:55.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-11-25 17:34:55.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-11-25 17:34:55.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-11-25 17:34:55.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-11-25 17:34:55.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-11-26 01:32:18.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-11-26 01:02:39.96 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-11-26 00:32:18.000 Logging started. ---------------------- 2010-11-26 00:32:18.000 BioCASe protocol used. ---------------------- 2010-11-26 00:32:18.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-11-26 00:32:18.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-11-26 00:32:18.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-11-26 00:32:18.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-11-26 00:32:18.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-11-26 01:02:39.96\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-11-26 01:02:39.96\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-11-26 01:02:39.96\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-11-26 00:32:18.000 Found online debuglevel setting: 1 ---------------------- 2010-11-26 00:32:18.000 Setting debuglevel from 0 to 1 ---------------------- 2010-11-26 00:32:18.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-11-26 00:32:18.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-11-26 00:32:18.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-11-26 00:32:18.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-11-26 00:32:18.000 Pickled file is of latest revision. ---------------------- 2010-11-26 00:32:18.000 Original filter string parsed:
0.1 2010-11-26 01:02:39.96 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-11-26 00:32:18.000 Filter created: None ---------------------- 2010-11-26 00:32:18.000 Compressed filter used: None ---------------------- 2010-11-26 00:32:18.000 Counting total matched records with filter=None ---------------------- 2010-11-26 00:32:18.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-11-26 00:32:18.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2010-11-26 18:22:34.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2010-11-26 17:22:34.000 Logging started. ---------------------- 2010-11-26 17:22:34.000 BioCASe protocol used. ---------------------- 2010-11-26 17:22:34.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2010-11-26 17:22:34.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2010-11-26 17:22:34.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-11-26 17:22:35.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2010-11-26 17:22:35.000 Unknown request type! Default to capabilities. ---------------------- 2010-11-26 17:22:35.000 Destination hostname could not be determined ---------------------- 2010-11-26 17:22:35.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2010-11-26 17:22:35.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-11-26 17:22:35.000 Pickled file is of latest revision. ---------------------- 2010-11-26 17:22:35.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2010-11-26 17:22:35.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2010-11-26 17:22:35.000 Reset CMF convenience cache data hash. ---------------------- 2010-11-26 17:22:35.000 Loading CMF from the source XML file. ---------------------- 2010-11-26 17:22:35.000 CMF Version 2.1 detected. ---------------------- 2010-11-26 17:22:35.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2010-11-26 17:22:35.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2010-11-26 17:22:35.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-11-26 17:22:35.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-11-26 17:22:35.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2010-11-27 19:39:34.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2010-11-27 18:39:34.000 Logging started. ---------------------- 2010-11-27 18:39:34.000 BioCASe protocol used. ---------------------- 2010-11-27 18:39:34.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2010-11-27 18:39:34.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2010-11-27 18:39:34.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-11-27 18:39:34.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2010-11-27 18:39:34.000 Unknown request type! Default to capabilities. ---------------------- 2010-11-27 18:39:34.000 Destination hostname could not be determined ---------------------- 2010-11-27 18:39:34.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2010-11-27 18:39:34.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-11-27 18:39:34.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-11-27 18:39:34.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2010-11-27 18:39:34.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-11-27 18:39:35.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-11-27 18:39:35.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-11-27 19:39:39.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2010-11-27 18:39:39.000 Logging started. ---------------------- 2010-11-27 18:39:39.000 BioCASe protocol used. ---------------------- 2010-11-27 18:39:39.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-11-27 18:39:39.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-11-27 18:39:39.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-11-27 18:39:40.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2010-11-27 18:39:40.000 Unknown request type! Default to capabilities. ---------------------- 2010-11-27 18:39:40.000 Destination hostname could not be determined ---------------------- 2010-11-27 18:39:40.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2010-11-27 18:39:40.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2010-11-27 18:39:40.000 Reset CMF convenience cache data hash. ---------------------- 2010-11-27 18:39:40.000 Loading CMF from the source XML file. ---------------------- 2010-11-27 18:39:40.000 CMF Version 2.1 detected. ---------------------- 2010-11-27 18:39:40.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2010-11-27 18:39:40.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2010-11-27 18:39:40.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-11-27 18:39:40.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-11-27 18:39:40.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-11-27 18:39:40.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-11-27 18:39:40.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-11-27 18:39:40.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-11-29 14:46:14.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2010-11-29 13:46:14.000 Logging started. ---------------------- 2010-11-29 13:46:14.000 BioCASe protocol used. ---------------------- 2010-11-29 13:46:14.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-11-29 13:46:14.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-11-29 13:46:14.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-11-29 13:46:14.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2010-11-29 13:46:14.000 Unknown request type! Default to capabilities. ---------------------- 2010-11-29 13:46:14.000 Destination hostname could not be determined ---------------------- 2010-11-29 13:46:14.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2010-11-29 13:46:14.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2010-11-29 13:46:14.000 Reset CMF convenience cache data hash. ---------------------- 2010-11-29 13:46:14.000 Loading CMF from the source XML file. ---------------------- 2010-11-29 13:46:14.000 CMF Version 2.1 detected. ---------------------- 2010-11-29 13:46:14.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2010-11-29 13:46:14.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2010-11-29 13:46:14.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-11-29 13:46:14.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-11-29 13:46:14.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-11-29 13:46:14.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-11-29 13:46:14.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-11-29 13:46:14.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2010-11-29 14:48:13.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2010-11-29 13:48:13.000 Logging started. ---------------------- 2010-11-29 13:48:13.000 BioCASe protocol used. ---------------------- 2010-11-29 13:48:13.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2010-11-29 13:48:13.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2010-11-29 13:48:13.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-11-29 13:48:13.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2010-11-29 13:48:13.000 Unknown request type! Default to capabilities. ---------------------- 2010-11-29 13:48:13.000 Destination hostname could not be determined ---------------------- 2010-11-29 13:48:13.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2010-11-29 13:48:13.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-11-29 13:48:14.000 Pickled file is of latest revision. ---------------------- 2010-11-29 13:48:14.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2010-11-29 13:48:14.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2010-11-29 13:48:14.000 Reset CMF convenience cache data hash. ---------------------- 2010-11-29 13:48:14.000 Loading CMF from the source XML file. ---------------------- 2010-11-29 13:48:14.000 CMF Version 2.1 detected. ---------------------- 2010-11-29 13:48:14.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2010-11-29 13:48:14.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2010-11-29 13:48:14.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-11-29 13:48:14.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-11-29 13:48:14.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2010-11-29 14:48:19.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2010-11-29 13:48:19.000 Logging started. ---------------------- 2010-11-29 13:48:19.000 BioCASe protocol used. ---------------------- 2010-11-29 13:48:19.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2010-11-29 13:48:20.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2010-11-29 13:48:20.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-11-29 13:48:20.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2010-11-29 13:48:20.000 Unknown request type! Default to capabilities. ---------------------- 2010-11-29 13:48:20.000 Destination hostname could not be determined ---------------------- 2010-11-29 13:48:20.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2010-11-29 13:48:20.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-11-29 13:48:20.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-11-29 13:48:20.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2010-11-29 13:48:20.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-11-29 13:48:20.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-11-29 13:48:20.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-12-03 01:30:38.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-12-03 01:01:22.45 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-12-03 00:30:38.000 Logging started. ---------------------- 2010-12-03 00:30:38.000 BioCASe protocol used. ---------------------- 2010-12-03 00:30:38.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-12-03 00:30:38.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-12-03 00:30:38.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-12-03 00:30:38.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-12-03 00:30:38.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-12-03 01:01:22.45\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-12-03 01:01:22.45\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-12-03 01:01:22.45\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-12-03 00:30:38.000 Found online debuglevel setting: 1 ---------------------- 2010-12-03 00:30:38.000 Setting debuglevel from 0 to 1 ---------------------- 2010-12-03 00:30:38.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-12-03 00:30:38.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-12-03 00:30:38.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-12-03 00:30:38.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-12-03 00:30:38.000 Pickled file is of latest revision. ---------------------- 2010-12-03 00:30:38.000 Original filter string parsed:
0.1 2010-12-03 01:01:22.45 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-12-03 00:30:38.000 Filter created: None ---------------------- 2010-12-03 00:30:38.000 Compressed filter used: None ---------------------- 2010-12-03 00:30:38.000 Counting total matched records with filter=None ---------------------- 2010-12-03 00:30:38.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-12-03 00:30:38.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2010-12-03 22:30:11.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2010-12-03 21:30:11.000 Logging started. ---------------------- 2010-12-03 21:30:11.000 BioCASe protocol used. ---------------------- 2010-12-03 21:30:11.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2010-12-03 21:30:11.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2010-12-03 21:30:11.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-12-03 21:30:11.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2010-12-03 21:30:11.000 Unknown request type! Default to capabilities. ---------------------- 2010-12-03 21:30:11.000 Destination hostname could not be determined ---------------------- 2010-12-03 21:30:11.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2010-12-03 21:30:11.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-12-03 21:30:11.000 Pickled file is of latest revision. ---------------------- 2010-12-03 21:30:11.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2010-12-03 21:30:11.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2010-12-03 21:30:11.000 Reset CMF convenience cache data hash. ---------------------- 2010-12-03 21:30:11.000 Loading CMF from the source XML file. ---------------------- 2010-12-03 21:30:11.000 CMF Version 2.1 detected. ---------------------- 2010-12-03 21:30:12.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2010-12-03 21:30:12.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2010-12-03 21:30:12.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-12-03 21:30:12.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-12-03 21:30:12.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINA **************************************** ### ERROR TIME 2010-12-05 15:51:15.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertina dGIwmH eembhovgwdpj, [url=http://kmdaqciarmnm.com/]kmdaqciarmnm[/url], [link=http://qxvyfyvqkthm.com/]qxvyfyvqkthm[/link], http://dupnhevmwiep.com/ ### ERROR LOG The Logging Results: ---------------------- 2010-12-05 14:51:15.000 Logging started. ---------------------- 2010-12-05 14:51:15.000 BioCASe protocol used. ---------------------- 2010-12-05 14:51:15.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertina']} ---------------------- 2010-12-05 14:51:15.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertina/provider_setup_file.xml ---------------------- 2010-12-05 14:51:15.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-12-05 14:51:15.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-12-05 14:51:15.000 All parameters found in the request: {'debug': '2', 'query': 'dGIwmH eembhovgwdpj, [url=http://kmdaqciarmnm.com/]kmdaqciarmnm[/url], [link=http://qxvyfyvqkthm.com/]qxvyfyvqkthm[/link], http://dupnhevmwiep.com/', 'Submit': 'Submit', 'request_string': 'dGIwmH eembhovgwdpj, [url=http://kmdaqciarmnm.com/]kmdaqciarmnm[/url], [link=http://qxvyfyvqkthm.com/]qxvyfyvqkthm[/link], http://dupnhevmwiep.com/'} ---------------------- 2010-12-05 14:51:15.000 Found online debuglevel setting: 2 ---------------------- 2010-12-05 14:51:15.000 Setting debuglevel from 0 to 2 ---------------------- 2010-12-05 14:51:15.000 REQ_PARSING_ERROR: The request could not be parsed. Please check if it is a valid XML document. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 87, in parseRequestString parseString(RequestString, handler) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/__init__.py", line 47, in parseString parser.parse(inpsrc) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 109, in parse xmlreader.IncrementalParser.parse(self, source) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/xmlreader.py", line 123, in parse self.feed(buffer) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 220, in feed self._err_handler.fatalError(exc) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/handler.py", line 38, in fatalError raise exception SAXParseException: :1:0: syntax error ---------------------- 2010-12-05 14:51:15.000 Serious PyWrapper instance crash Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/www/pywrapper.cgi", line 55, in ? pywInstance.setRequest() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 136, in setRequest self.protocolObj.setRequest(args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 37, in setRequest ProtocolBaseClass.setRequest(self, RequestClass, args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/base_protocol.py", line 41, in setRequest self.requestObj.setRequest(args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 48, in setRequest self.parseRequestString(args['request_string']) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 89, in parseRequestString raise RequestParseError(self.logObj) RequestParseError: ---------------------- 2010-12-05 14:51:15.000 Unknown Request-type : None ---------------------- 2010-12-05 14:51:15.000 Setting debuglevel from 2 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2010-12-06 05:12:19.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2010-12-06 04:12:19.000 Logging started. ---------------------- 2010-12-06 04:12:19.000 BioCASe protocol used. ---------------------- 2010-12-06 04:12:19.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2010-12-06 04:12:19.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2010-12-06 04:12:19.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-12-06 04:12:19.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2010-12-06 04:12:19.000 Unknown request type! Default to capabilities. ---------------------- 2010-12-06 04:12:19.000 Destination hostname could not be determined ---------------------- 2010-12-06 04:12:19.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2010-12-06 04:12:19.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-12-06 04:12:20.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-12-06 04:12:20.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2010-12-06 04:12:20.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-12-06 04:12:20.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-12-06 04:12:20.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2010-12-06 07:41:34.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2010-12-06 06:41:34.000 Logging started. ---------------------- 2010-12-06 06:41:34.000 BioCASe protocol used. ---------------------- 2010-12-06 06:41:34.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2010-12-06 06:41:34.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2010-12-06 06:41:34.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-12-06 06:41:34.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2010-12-06 06:41:34.000 Unknown request type! Default to capabilities. ---------------------- 2010-12-06 06:41:34.000 Destination hostname could not be determined ---------------------- 2010-12-06 06:41:34.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2010-12-06 06:41:34.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-12-06 06:41:34.000 Pickled file is of latest revision. ---------------------- 2010-12-06 06:41:34.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2010-12-06 06:41:34.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2010-12-06 06:41:34.000 Reset CMF convenience cache data hash. ---------------------- 2010-12-06 06:41:34.000 Loading CMF from the source XML file. ---------------------- 2010-12-06 06:41:34.000 CMF Version 2.1 detected. ---------------------- 2010-12-06 06:41:34.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2010-12-06 06:41:34.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2010-12-06 06:41:34.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-12-06 06:41:34.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-12-06 06:41:34.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-12-09 14:33:33.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-12-09 14:33:32.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA joyucr@tyugmq.com USA eevsttz USA 559704 USA joyucr@tyugmq.com eevsttz eevsttz
### ERROR LOG The Logging Results: ---------------------- 2010-12-09 13:33:33.000 Logging started. ---------------------- 2010-12-09 13:33:33.000 BioCASe protocol used. ---------------------- 2010-12-09 13:33:33.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-12-09 13:33:33.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-12-09 13:33:33.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-12-09 13:33:33.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-12-09 13:33:33.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-12-09 14:33:32.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n joyucr@tyugmq.com\n USA\n eevsttz\n USA\n 559704\n USA\n joyucr@tyugmq.com\n eevsttz\n eevsttz\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-12-09 14:33:32.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n joyucr@tyugmq.com\n USA\n eevsttz\n USA\n 559704\n USA\n joyucr@tyugmq.com\n eevsttz\n eevsttz\n\n\n\n \n
'} ---------------------- 2010-12-09 13:33:33.000 Found online debuglevel setting: 1 ---------------------- 2010-12-09 13:33:33.000 Setting debuglevel from 0 to 1 ---------------------- 2010-12-09 13:33:33.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-12-09 13:33:33.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-12-09 13:33:33.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-12-09 13:33:33.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-12-09 13:33:33.000 Pickled file is of latest revision. ---------------------- 2010-12-09 13:33:33.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-12-09 13:33:33.000 Original filter string parsed:
2.4.2 2010-12-09 14:33:32.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA joyucr@tyugmq.com USA eevsttz USA 559704 USA joyucr@tyugmq.com eevsttz eevsttz
---------------------- 2010-12-09 13:33:33.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = joyucr@tyugmq.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE eevsttz ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 559704 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = joyucr@tyugmq.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = eevsttz ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE eevsttz )) ---------------------- 2010-12-09 13:33:33.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = joyucr@tyugmq.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE eevsttz ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 559704 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = joyucr@tyugmq.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = eevsttz ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE eevsttz )) ---------------------- 2010-12-09 13:33:33.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = joyucr@tyugmq.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE eevsttz ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 559704 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = joyucr@tyugmq.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = eevsttz ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE eevsttz )) ---------------------- 2010-12-09 13:33:33.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = joyucr@tyugmq.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE eevsttz ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 559704 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = joyucr@tyugmq.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = eevsttz ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE eevsttz )) ---------------------- 2010-12-09 13:33:33.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-12-09 13:33:33.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'joyucr@tyugmq.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'eevsttz' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '559704' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'joyucr@tyugmq.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'eevsttz' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'eevsttz' ))' ---------------------- 2010-12-09 13:33:34.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "joyucr@tyugmq.com" ---------------------- 2010-12-09 13:33:34.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-12-10 01:30:03.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-12-10 01:01:09.51 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-12-10 00:30:03.000 Logging started. ---------------------- 2010-12-10 00:30:03.000 BioCASe protocol used. ---------------------- 2010-12-10 00:30:03.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-12-10 00:30:03.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-12-10 00:30:03.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-12-10 00:30:03.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-12-10 00:30:03.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-12-10 01:01:09.51\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-12-10 01:01:09.51\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-12-10 01:01:09.51\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-12-10 00:30:03.000 Found online debuglevel setting: 1 ---------------------- 2010-12-10 00:30:03.000 Setting debuglevel from 0 to 1 ---------------------- 2010-12-10 00:30:03.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-12-10 00:30:03.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-12-10 00:30:03.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-12-10 00:30:03.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-12-10 00:30:03.000 Pickled file is of latest revision. ---------------------- 2010-12-10 00:30:03.000 Original filter string parsed:
0.1 2010-12-10 01:01:09.51 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-12-10 00:30:03.000 Filter created: None ---------------------- 2010-12-10 00:30:03.000 Compressed filter used: None ---------------------- 2010-12-10 00:30:03.000 Counting total matched records with filter=None ---------------------- 2010-12-10 00:30:03.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-12-10 00:30:03.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-12-12 08:00:13.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-12-12 08:00:13.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA sort@jargi.com USA jiga USA 7872 USA sort@jargi.com jiga jiga
### ERROR LOG The Logging Results: ---------------------- 2010-12-12 07:00:13.000 Logging started. ---------------------- 2010-12-12 07:00:13.000 BioCASe protocol used. ---------------------- 2010-12-12 07:00:13.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-12-12 07:00:14.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-12-12 07:00:14.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-12-12 07:00:14.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-12-12 07:00:14.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-12-12 08:00:13.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n sort@jargi.com\n USA\n jiga\n USA\n 7872\n USA\n sort@jargi.com\n jiga\n jiga\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-12-12 08:00:13.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n sort@jargi.com\n USA\n jiga\n USA\n 7872\n USA\n sort@jargi.com\n jiga\n jiga\n\n\n\n \n
'} ---------------------- 2010-12-12 07:00:14.000 Found online debuglevel setting: 1 ---------------------- 2010-12-12 07:00:14.000 Setting debuglevel from 0 to 1 ---------------------- 2010-12-12 07:00:14.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-12-12 07:00:14.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-12-12 07:00:14.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-12-12 07:00:14.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-12-12 07:00:14.000 Pickled file is of latest revision. ---------------------- 2010-12-12 07:00:14.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-12-12 07:00:14.000 Original filter string parsed:
2.4.2 2010-12-12 08:00:13.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA sort@jargi.com USA jiga USA 7872 USA sort@jargi.com jiga jiga
---------------------- 2010-12-12 07:00:14.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = sort@jargi.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE jiga ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 7872 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = sort@jargi.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = jiga ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jiga )) ---------------------- 2010-12-12 07:00:14.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = sort@jargi.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE jiga ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 7872 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = sort@jargi.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = jiga ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jiga )) ---------------------- 2010-12-12 07:00:14.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = sort@jargi.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE jiga ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 7872 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = sort@jargi.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = jiga ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jiga )) ---------------------- 2010-12-12 07:00:14.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = sort@jargi.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE jiga ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 7872 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = sort@jargi.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = jiga ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jiga )) ---------------------- 2010-12-12 07:00:14.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-12-12 07:00:14.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'sort@jargi.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'jiga' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '7872' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'sort@jargi.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'jiga' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'jiga' ))' ---------------------- 2010-12-12 07:00:14.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "sort@jargi.com" ---------------------- 2010-12-12 07:00:14.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-12-15 07:26:21.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-12-15 07:26:20.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString deZWMDWzAG UYawcRgJNcPhucVa dkxRstbcupZPe Litbpan WzRglJokjYIWwRBKR acaoNwNpCMizVH JczxuCIghm cfqFLOuMLzH QLrhDnGO Litbpan
### ERROR LOG The Logging Results: ---------------------- 2010-12-15 06:26:21.000 Logging started. ---------------------- 2010-12-15 06:26:21.000 BioCASe protocol used. ---------------------- 2010-12-15 06:26:21.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-12-15 06:26:21.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-12-15 06:26:21.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-12-15 06:26:21.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-12-15 06:26:21.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-12-15 07:26:20.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n deZWMDWzAG\n UYawcRgJNcPhucVa\n dkxRstbcupZPe\n Litbpan\n WzRglJokjYIWwRBKR\n acaoNwNpCMizVH\n JczxuCIghm\n cfqFLOuMLzH\n QLrhDnGO\n Litbpan\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-12-15 07:26:20.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n deZWMDWzAG\n UYawcRgJNcPhucVa\n dkxRstbcupZPe\n Litbpan\n WzRglJokjYIWwRBKR\n acaoNwNpCMizVH\n JczxuCIghm\n cfqFLOuMLzH\n QLrhDnGO\n Litbpan\n\n\n\n \n
'} ---------------------- 2010-12-15 06:26:21.000 Found online debuglevel setting: 1 ---------------------- 2010-12-15 06:26:21.000 Setting debuglevel from 0 to 1 ---------------------- 2010-12-15 06:26:21.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-12-15 06:26:21.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-12-15 06:26:21.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-12-15 06:26:21.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-12-15 06:26:21.000 Pickled file is of latest revision. ---------------------- 2010-12-15 06:26:21.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-12-15 06:26:21.000 Original filter string parsed:
2.4.2 2010-12-15 07:26:20.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString deZWMDWzAG UYawcRgJNcPhucVa dkxRstbcupZPe Litbpan WzRglJokjYIWwRBKR acaoNwNpCMizVH JczxuCIghm cfqFLOuMLzH QLrhDnGO Litbpan
---------------------- 2010-12-15 06:26:21.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE deZWMDWzAG ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = UYawcRgJNcPhucVa ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE dkxRstbcupZPe ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Litbpan ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE WzRglJokjYIWwRBKR ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE acaoNwNpCMizVH ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE JczxuCIghm ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = cfqFLOuMLzH ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = QLrhDnGO ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Litbpan )) ---------------------- 2010-12-15 06:26:21.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE deZWMDWzAG ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = UYawcRgJNcPhucVa ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE dkxRstbcupZPe ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Litbpan ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE WzRglJokjYIWwRBKR ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE acaoNwNpCMizVH ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE JczxuCIghm ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = cfqFLOuMLzH ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = QLrhDnGO ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Litbpan )) ---------------------- 2010-12-15 06:26:21.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE deZWMDWzAG ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = UYawcRgJNcPhucVa ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE dkxRstbcupZPe ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Litbpan ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE WzRglJokjYIWwRBKR ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE acaoNwNpCMizVH ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE JczxuCIghm ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = cfqFLOuMLzH ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = QLrhDnGO ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Litbpan )) ---------------------- 2010-12-15 06:26:21.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE deZWMDWzAG ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = UYawcRgJNcPhucVa ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE dkxRstbcupZPe ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Litbpan ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE WzRglJokjYIWwRBKR ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE acaoNwNpCMizVH ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE JczxuCIghm ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = cfqFLOuMLzH ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = QLrhDnGO ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE Litbpan )) ---------------------- 2010-12-15 06:26:21.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-12-15 06:26:21.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'deZWMDWzAG' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'UYawcRgJNcPhucVa' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'dkxRstbcupZPe' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Litbpan' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'WzRglJokjYIWwRBKR' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'acaoNwNpCMizVH' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'JczxuCIghm' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'cfqFLOuMLzH' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'QLrhDnGO' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'Litbpan' ))' ---------------------- 2010-12-15 06:26:21.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "UYawcRgJNcPhucVa" ---------------------- 2010-12-15 06:26:21.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-12-17 01:29:49.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-12-17 01:01:18.25 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-12-17 00:29:49.000 Logging started. ---------------------- 2010-12-17 00:29:49.000 BioCASe protocol used. ---------------------- 2010-12-17 00:29:49.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-12-17 00:29:49.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-12-17 00:29:49.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-12-17 00:29:50.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-12-17 00:29:50.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-12-17 01:01:18.25\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-12-17 01:01:18.25\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-12-17 01:01:18.25\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-12-17 00:29:50.000 Found online debuglevel setting: 1 ---------------------- 2010-12-17 00:29:50.000 Setting debuglevel from 0 to 1 ---------------------- 2010-12-17 00:29:50.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-12-17 00:29:50.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-12-17 00:29:50.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-12-17 00:29:50.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-12-17 00:29:50.000 Pickled file is of latest revision. ---------------------- 2010-12-17 00:29:50.000 Original filter string parsed:
0.1 2010-12-17 01:01:18.25 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-12-17 00:29:50.000 Filter created: None ---------------------- 2010-12-17 00:29:50.000 Compressed filter used: None ---------------------- 2010-12-17 00:29:50.000 Counting total matched records with filter=None ---------------------- 2010-12-17 00:29:50.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-12-17 00:29:50.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-12-17 05:55:26.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-12-17 05:55:26.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA email@gmail.com USA jonn1 USA 562516 USA email@gmail.com jonn1 jonn1
### ERROR LOG The Logging Results: ---------------------- 2010-12-17 04:55:26.000 Logging started. ---------------------- 2010-12-17 04:55:26.000 BioCASe protocol used. ---------------------- 2010-12-17 04:55:26.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-12-17 04:55:26.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-12-17 04:55:26.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-12-17 04:55:26.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-12-17 04:55:26.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-12-17 05:55:26.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n email@gmail.com\n USA\n jonn1\n USA\n 562516\n USA\n email@gmail.com\n jonn1\n jonn1\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-12-17 05:55:26.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n email@gmail.com\n USA\n jonn1\n USA\n 562516\n USA\n email@gmail.com\n jonn1\n jonn1\n\n\n\n \n
'} ---------------------- 2010-12-17 04:55:26.000 Found online debuglevel setting: 1 ---------------------- 2010-12-17 04:55:26.000 Setting debuglevel from 0 to 1 ---------------------- 2010-12-17 04:55:26.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-12-17 04:55:27.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-12-17 04:55:27.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-12-17 04:55:27.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-12-17 04:55:27.000 Pickled file is of latest revision. ---------------------- 2010-12-17 04:55:27.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-12-17 04:55:27.000 Original filter string parsed:
2.4.2 2010-12-17 05:55:26.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA email@gmail.com USA jonn1 USA 562516 USA email@gmail.com jonn1 jonn1
---------------------- 2010-12-17 04:55:27.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = email@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE jonn1 ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 562516 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = email@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = jonn1 ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jonn1 )) ---------------------- 2010-12-17 04:55:27.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = email@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE jonn1 ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 562516 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = email@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = jonn1 ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jonn1 )) ---------------------- 2010-12-17 04:55:27.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = email@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE jonn1 ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 562516 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = email@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = jonn1 ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jonn1 )) ---------------------- 2010-12-17 04:55:27.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = email@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE jonn1 ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 562516 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = email@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = jonn1 ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jonn1 )) ---------------------- 2010-12-17 04:55:27.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-12-17 04:55:27.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'email@gmail.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'jonn1' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '562516' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'email@gmail.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'jonn1' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'jonn1' ))' ---------------------- 2010-12-17 04:55:27.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "email@gmail.com" ---------------------- 2010-12-17 04:55:27.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-12-18 02:19:12.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-12-18 02:19:11.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA email@gmail.com USA jonn1 USA 18351 USA email@gmail.com jonn1 jonn1
### ERROR LOG The Logging Results: ---------------------- 2010-12-18 01:19:12.000 Logging started. ---------------------- 2010-12-18 01:19:12.000 BioCASe protocol used. ---------------------- 2010-12-18 01:19:12.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-12-18 01:19:12.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-12-18 01:19:12.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-12-18 01:19:12.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-12-18 01:19:12.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-12-18 02:19:11.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n email@gmail.com\n USA\n jonn1\n USA\n 18351\n USA\n email@gmail.com\n jonn1\n jonn1\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-12-18 02:19:11.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n email@gmail.com\n USA\n jonn1\n USA\n 18351\n USA\n email@gmail.com\n jonn1\n jonn1\n\n\n\n \n
'} ---------------------- 2010-12-18 01:19:12.000 Found online debuglevel setting: 1 ---------------------- 2010-12-18 01:19:12.000 Setting debuglevel from 0 to 1 ---------------------- 2010-12-18 01:19:12.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-12-18 01:19:12.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-12-18 01:19:12.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-12-18 01:19:12.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-12-18 01:19:12.000 Pickled file is of latest revision. ---------------------- 2010-12-18 01:19:12.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-12-18 01:19:12.000 Original filter string parsed:
2.4.2 2010-12-18 02:19:11.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA email@gmail.com USA jonn1 USA 18351 USA email@gmail.com jonn1 jonn1
---------------------- 2010-12-18 01:19:12.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = email@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE jonn1 ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 18351 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = email@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = jonn1 ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jonn1 )) ---------------------- 2010-12-18 01:19:12.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = email@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE jonn1 ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 18351 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = email@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = jonn1 ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jonn1 )) ---------------------- 2010-12-18 01:19:12.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = email@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE jonn1 ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 18351 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = email@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = jonn1 ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jonn1 )) ---------------------- 2010-12-18 01:19:12.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = email@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE jonn1 ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 18351 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = email@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = jonn1 ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jonn1 )) ---------------------- 2010-12-18 01:19:12.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-12-18 01:19:12.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'email@gmail.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'jonn1' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '18351' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'email@gmail.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'jonn1' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'jonn1' ))' ---------------------- 2010-12-18 01:19:12.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "email@gmail.com" ---------------------- 2010-12-18 01:19:13.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-12-18 10:25:21.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2010-12-18 09:25:21.000 Logging started. ---------------------- 2010-12-18 09:25:21.000 BioCASe protocol used. ---------------------- 2010-12-18 09:25:21.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-12-18 09:25:21.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-12-18 09:25:21.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-12-18 09:25:21.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2010-12-18 09:25:21.000 Unknown request type! Default to capabilities. ---------------------- 2010-12-18 09:25:21.000 Destination hostname could not be determined ---------------------- 2010-12-18 09:25:21.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2010-12-18 09:25:21.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2010-12-18 09:25:21.000 Reset CMF convenience cache data hash. ---------------------- 2010-12-18 09:25:22.000 Loading CMF from the source XML file. ---------------------- 2010-12-18 09:25:22.000 CMF Version 2.1 detected. ---------------------- 2010-12-18 09:25:22.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2010-12-18 09:25:22.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2010-12-18 09:25:22.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-12-18 09:25:22.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-12-18 09:25:22.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-12-18 09:25:22.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-12-18 09:25:22.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-12-18 09:25:22.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2010-12-18 10:46:35.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2010-12-18 09:46:35.000 Logging started. ---------------------- 2010-12-18 09:46:35.000 BioCASe protocol used. ---------------------- 2010-12-18 09:46:35.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2010-12-18 09:46:35.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2010-12-18 09:46:35.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-12-18 09:46:36.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2010-12-18 09:46:36.000 Unknown request type! Default to capabilities. ---------------------- 2010-12-18 09:46:36.000 Destination hostname could not be determined ---------------------- 2010-12-18 09:46:36.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2010-12-18 09:46:36.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-12-18 09:46:36.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-12-18 09:46:36.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2010-12-18 09:46:36.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-12-18 09:46:36.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-12-18 09:46:36.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-12-18 20:57:12.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2010-12-18 19:57:12.000 Logging started. ---------------------- 2010-12-18 19:57:12.000 BioCASe protocol used. ---------------------- 2010-12-18 19:57:12.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-12-18 19:57:12.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-12-18 19:57:12.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-12-18 19:57:12.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2010-12-18 19:57:12.000 Unknown request type! Default to capabilities. ---------------------- 2010-12-18 19:57:12.000 Destination hostname could not be determined ---------------------- 2010-12-18 19:57:12.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2010-12-18 19:57:12.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2010-12-18 19:57:12.000 Reset CMF convenience cache data hash. ---------------------- 2010-12-18 19:57:12.000 Loading CMF from the source XML file. ---------------------- 2010-12-18 19:57:12.000 CMF Version 2.1 detected. ---------------------- 2010-12-18 19:57:12.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2010-12-18 19:57:12.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2010-12-18 19:57:12.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-12-18 19:57:12.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-12-18 19:57:12.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-12-18 19:57:12.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-12-18 19:57:12.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-12-18 19:57:12.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2010-12-19 03:51:34.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2010-12-19 02:51:34.000 Logging started. ---------------------- 2010-12-19 02:51:34.000 BioCASe protocol used. ---------------------- 2010-12-19 02:51:34.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2010-12-19 02:51:34.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2010-12-19 02:51:34.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-12-19 02:51:34.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2010-12-19 02:51:34.000 Unknown request type! Default to capabilities. ---------------------- 2010-12-19 02:51:34.000 Destination hostname could not be determined ---------------------- 2010-12-19 02:51:34.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2010-12-19 02:51:34.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-12-19 02:51:34.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-12-19 02:51:34.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2010-12-19 02:51:34.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-12-19 02:51:34.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-12-19 02:51:34.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-12-19 03:51:44.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2010-12-19 02:51:44.000 Logging started. ---------------------- 2010-12-19 02:51:44.000 BioCASe protocol used. ---------------------- 2010-12-19 02:51:44.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-12-19 02:51:44.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-12-19 02:51:44.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-12-19 02:51:44.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2010-12-19 02:51:44.000 Unknown request type! Default to capabilities. ---------------------- 2010-12-19 02:51:44.000 Destination hostname could not be determined ---------------------- 2010-12-19 02:51:44.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2010-12-19 02:51:44.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2010-12-19 02:51:44.000 Reset CMF convenience cache data hash. ---------------------- 2010-12-19 02:51:44.000 Loading CMF from the source XML file. ---------------------- 2010-12-19 02:51:44.000 CMF Version 2.1 detected. ---------------------- 2010-12-19 02:51:45.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2010-12-19 02:51:45.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2010-12-19 02:51:45.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-12-19 02:51:45.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-12-19 02:51:45.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-12-19 02:51:45.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-12-19 02:51:45.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-12-19 02:51:45.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2010-12-19 21:01:16.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2010-12-19 20:01:16.000 Logging started. ---------------------- 2010-12-19 20:01:16.000 BioCASe protocol used. ---------------------- 2010-12-19 20:01:16.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2010-12-19 20:01:16.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2010-12-19 20:01:16.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-12-19 20:01:16.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2010-12-19 20:01:16.000 Unknown request type! Default to capabilities. ---------------------- 2010-12-19 20:01:16.000 Destination hostname could not be determined ---------------------- 2010-12-19 20:01:16.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2010-12-19 20:01:16.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-12-19 20:01:16.000 Pickled file is of latest revision. ---------------------- 2010-12-19 20:01:16.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2010-12-19 20:01:16.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2010-12-19 20:01:16.000 Reset CMF convenience cache data hash. ---------------------- 2010-12-19 20:01:16.000 Loading CMF from the source XML file. ---------------------- 2010-12-19 20:01:16.000 CMF Version 2.1 detected. ---------------------- 2010-12-19 20:01:17.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2010-12-19 20:01:17.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2010-12-19 20:01:17.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-12-19 20:01:17.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-12-19 20:01:17.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-12-19 21:01:41.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2010-12-19 20:01:41.000 Logging started. ---------------------- 2010-12-19 20:01:41.000 BioCASe protocol used. ---------------------- 2010-12-19 20:01:41.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-12-19 20:01:41.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-12-19 20:01:41.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-12-19 20:01:41.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2010-12-19 20:01:41.000 Unknown request type! Default to capabilities. ---------------------- 2010-12-19 20:01:41.000 Destination hostname could not be determined ---------------------- 2010-12-19 20:01:41.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2010-12-19 20:01:41.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2010-12-19 20:01:41.000 Reset CMF convenience cache data hash. ---------------------- 2010-12-19 20:01:41.000 Loading CMF from the source XML file. ---------------------- 2010-12-19 20:01:41.000 CMF Version 2.1 detected. ---------------------- 2010-12-19 20:01:41.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2010-12-19 20:01:41.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2010-12-19 20:01:41.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-12-19 20:01:41.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-12-19 20:01:41.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-12-19 20:01:41.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-12-19 20:01:41.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-12-19 20:01:41.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-12-21 13:37:09.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-12-21 13:37:08.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA email@gmail.com USA jonn2 USA 110626 USA email@gmail.com jonn2 jonn2
### ERROR LOG The Logging Results: ---------------------- 2010-12-21 12:37:09.000 Logging started. ---------------------- 2010-12-21 12:37:09.000 BioCASe protocol used. ---------------------- 2010-12-21 12:37:09.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-12-21 12:37:09.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-12-21 12:37:09.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-12-21 12:37:09.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-12-21 12:37:09.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-12-21 13:37:08.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n email@gmail.com\n USA\n jonn2\n USA\n 110626\n USA\n email@gmail.com\n jonn2\n jonn2\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-12-21 13:37:08.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n email@gmail.com\n USA\n jonn2\n USA\n 110626\n USA\n email@gmail.com\n jonn2\n jonn2\n\n\n\n \n
'} ---------------------- 2010-12-21 12:37:09.000 Found online debuglevel setting: 1 ---------------------- 2010-12-21 12:37:09.000 Setting debuglevel from 0 to 1 ---------------------- 2010-12-21 12:37:09.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-12-21 12:37:09.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-12-21 12:37:09.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-12-21 12:37:09.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-12-21 12:37:10.000 Pickled file is of latest revision. ---------------------- 2010-12-21 12:37:10.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-12-21 12:37:10.000 Original filter string parsed:
2.4.2 2010-12-21 13:37:08.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA email@gmail.com USA jonn2 USA 110626 USA email@gmail.com jonn2 jonn2
---------------------- 2010-12-21 12:37:10.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = email@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE jonn2 ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 110626 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = email@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = jonn2 ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jonn2 )) ---------------------- 2010-12-21 12:37:10.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = email@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE jonn2 ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 110626 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = email@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = jonn2 ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jonn2 )) ---------------------- 2010-12-21 12:37:10.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = email@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE jonn2 ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 110626 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = email@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = jonn2 ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jonn2 )) ---------------------- 2010-12-21 12:37:10.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = email@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE jonn2 ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 110626 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = email@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = jonn2 ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jonn2 )) ---------------------- 2010-12-21 12:37:10.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-12-21 12:37:10.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'email@gmail.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'jonn2' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '110626' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'email@gmail.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'jonn2' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'jonn2' ))' ---------------------- 2010-12-21 12:37:10.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "email@gmail.com" ---------------------- 2010-12-21 12:37:10.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-12-22 12:44:16.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-12-22 12:44:15.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA eixeem@elvdlz.com USA wqymgqm USA 65091 USA eixeem@elvdlz.com wqymgqm wqymgqm
### ERROR LOG The Logging Results: ---------------------- 2010-12-22 11:44:16.000 Logging started. ---------------------- 2010-12-22 11:44:16.000 BioCASe protocol used. ---------------------- 2010-12-22 11:44:16.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-12-22 11:44:16.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-12-22 11:44:16.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-12-22 11:44:16.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-12-22 11:44:16.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-12-22 12:44:15.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n eixeem@elvdlz.com\n USA\n wqymgqm\n USA\n 65091\n USA\n eixeem@elvdlz.com\n wqymgqm\n wqymgqm\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-12-22 12:44:15.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n eixeem@elvdlz.com\n USA\n wqymgqm\n USA\n 65091\n USA\n eixeem@elvdlz.com\n wqymgqm\n wqymgqm\n\n\n\n \n
'} ---------------------- 2010-12-22 11:44:16.000 Found online debuglevel setting: 1 ---------------------- 2010-12-22 11:44:16.000 Setting debuglevel from 0 to 1 ---------------------- 2010-12-22 11:44:16.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-12-22 11:44:16.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-12-22 11:44:16.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-12-22 11:44:16.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-12-22 11:44:16.000 Pickled file is of latest revision. ---------------------- 2010-12-22 11:44:16.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-12-22 11:44:16.000 Original filter string parsed:
2.4.2 2010-12-22 12:44:15.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA eixeem@elvdlz.com USA wqymgqm USA 65091 USA eixeem@elvdlz.com wqymgqm wqymgqm
---------------------- 2010-12-22 11:44:16.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = eixeem@elvdlz.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE wqymgqm ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 65091 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = eixeem@elvdlz.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = wqymgqm ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE wqymgqm )) ---------------------- 2010-12-22 11:44:16.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = eixeem@elvdlz.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE wqymgqm ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 65091 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = eixeem@elvdlz.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = wqymgqm ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE wqymgqm )) ---------------------- 2010-12-22 11:44:16.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = eixeem@elvdlz.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE wqymgqm ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 65091 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = eixeem@elvdlz.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = wqymgqm ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE wqymgqm )) ---------------------- 2010-12-22 11:44:16.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = eixeem@elvdlz.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE wqymgqm ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 65091 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = eixeem@elvdlz.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = wqymgqm ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE wqymgqm )) ---------------------- 2010-12-22 11:44:16.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-12-22 11:44:16.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'eixeem@elvdlz.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'wqymgqm' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '65091' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'eixeem@elvdlz.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'wqymgqm' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'wqymgqm' ))' ---------------------- 2010-12-22 11:44:16.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "eixeem@elvdlz.com" ---------------------- 2010-12-22 11:44:16.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-12-24 01:29:19.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-12-24 01:01:09.82 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-12-24 00:29:19.000 Logging started. ---------------------- 2010-12-24 00:29:19.000 BioCASe protocol used. ---------------------- 2010-12-24 00:29:19.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-12-24 00:29:19.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-12-24 00:29:19.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-12-24 00:29:19.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-12-24 00:29:19.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-12-24 01:01:09.82\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-12-24 01:01:09.82\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-12-24 01:01:09.82\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-12-24 00:29:19.000 Found online debuglevel setting: 1 ---------------------- 2010-12-24 00:29:19.000 Setting debuglevel from 0 to 1 ---------------------- 2010-12-24 00:29:19.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-12-24 00:29:19.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-12-24 00:29:19.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-12-24 00:29:19.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-12-24 00:29:19.000 Pickled file is of latest revision. ---------------------- 2010-12-24 00:29:19.000 Original filter string parsed:
0.1 2010-12-24 01:01:09.82 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-12-24 00:29:19.000 Filter created: None ---------------------- 2010-12-24 00:29:19.000 Compressed filter used: None ---------------------- 2010-12-24 00:29:19.000 Counting total matched records with filter=None ---------------------- 2010-12-24 00:29:19.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-12-24 00:29:20.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2010-12-24 06:58:06.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2010-12-24 05:58:06.000 Logging started. ---------------------- 2010-12-24 05:58:06.000 BioCASe protocol used. ---------------------- 2010-12-24 05:58:06.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2010-12-24 05:58:06.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2010-12-24 05:58:06.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-12-24 05:58:06.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2010-12-24 05:58:06.000 Unknown request type! Default to capabilities. ---------------------- 2010-12-24 05:58:06.000 Destination hostname could not be determined ---------------------- 2010-12-24 05:58:06.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2010-12-24 05:58:06.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-12-24 05:58:06.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-12-24 05:58:06.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2010-12-24 05:58:06.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-12-24 05:58:06.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-12-24 05:58:06.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2010-12-24 10:39:54.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2010-12-24 09:39:54.000 Logging started. ---------------------- 2010-12-24 09:39:54.000 BioCASe protocol used. ---------------------- 2010-12-24 09:39:54.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2010-12-24 09:39:54.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2010-12-24 09:39:54.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-12-24 09:39:54.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2010-12-24 09:39:54.000 Unknown request type! Default to capabilities. ---------------------- 2010-12-24 09:39:54.000 Destination hostname could not be determined ---------------------- 2010-12-24 09:39:54.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2010-12-24 09:39:54.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-12-24 09:39:55.000 Pickled file is of latest revision. ---------------------- 2010-12-24 09:39:55.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2010-12-24 09:39:55.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2010-12-24 09:39:55.000 Reset CMF convenience cache data hash. ---------------------- 2010-12-24 09:39:55.000 Loading CMF from the source XML file. ---------------------- 2010-12-24 09:39:55.000 CMF Version 2.1 detected. ---------------------- 2010-12-24 09:39:55.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2010-12-24 09:39:55.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2010-12-24 09:39:55.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-12-24 09:39:55.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-12-24 09:39:55.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-12-25 02:11:49.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2010-12-25 01:11:49.000 Logging started. ---------------------- 2010-12-25 01:11:49.000 BioCASe protocol used. ---------------------- 2010-12-25 01:11:49.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-12-25 01:11:49.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-12-25 01:11:49.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-12-25 01:11:50.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2010-12-25 01:11:50.000 Unknown request type! Default to capabilities. ---------------------- 2010-12-25 01:11:50.000 Destination hostname could not be determined ---------------------- 2010-12-25 01:11:50.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2010-12-25 01:11:50.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2010-12-25 01:11:50.000 Reset CMF convenience cache data hash. ---------------------- 2010-12-25 01:11:50.000 Loading CMF from the source XML file. ---------------------- 2010-12-25 01:11:50.000 CMF Version 2.1 detected. ---------------------- 2010-12-25 01:11:50.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2010-12-25 01:11:50.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2010-12-25 01:11:50.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-12-25 01:11:50.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-12-25 01:11:50.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-12-25 01:11:50.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-12-25 01:11:50.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-12-25 01:11:50.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-12-25 07:18:01.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-12-25 07:18:01.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA email@gmail.com USA jonn3 USA 6095 USA email@gmail.com jonn3 jonn3
### ERROR LOG The Logging Results: ---------------------- 2010-12-25 06:18:01.000 Logging started. ---------------------- 2010-12-25 06:18:01.000 BioCASe protocol used. ---------------------- 2010-12-25 06:18:01.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-12-25 06:18:01.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-12-25 06:18:01.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-12-25 06:18:01.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-12-25 06:18:01.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-12-25 07:18:01.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n email@gmail.com\n USA\n jonn3\n USA\n 6095\n USA\n email@gmail.com\n jonn3\n jonn3\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-12-25 07:18:01.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n email@gmail.com\n USA\n jonn3\n USA\n 6095\n USA\n email@gmail.com\n jonn3\n jonn3\n\n\n\n \n
'} ---------------------- 2010-12-25 06:18:01.000 Found online debuglevel setting: 1 ---------------------- 2010-12-25 06:18:01.000 Setting debuglevel from 0 to 1 ---------------------- 2010-12-25 06:18:01.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-12-25 06:18:01.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-12-25 06:18:01.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-12-25 06:18:01.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-12-25 06:18:02.000 Pickled file is of latest revision. ---------------------- 2010-12-25 06:18:02.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-12-25 06:18:02.000 Original filter string parsed:
2.4.2 2010-12-25 07:18:01.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA email@gmail.com USA jonn3 USA 6095 USA email@gmail.com jonn3 jonn3
---------------------- 2010-12-25 06:18:02.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = email@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE jonn3 ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 6095 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = email@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = jonn3 ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jonn3 )) ---------------------- 2010-12-25 06:18:02.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = email@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE jonn3 ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 6095 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = email@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = jonn3 ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jonn3 )) ---------------------- 2010-12-25 06:18:02.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = email@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE jonn3 ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 6095 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = email@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = jonn3 ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jonn3 )) ---------------------- 2010-12-25 06:18:02.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = email@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE jonn3 ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 6095 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = email@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = jonn3 ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jonn3 )) ---------------------- 2010-12-25 06:18:02.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-12-25 06:18:02.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'email@gmail.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'jonn3' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '6095' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'email@gmail.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'jonn3' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'jonn3' ))' ---------------------- 2010-12-25 06:18:02.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "email@gmail.com" ---------------------- 2010-12-25 06:18:02.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-12-27 18:57:41.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2010-12-27 17:57:41.000 Logging started. ---------------------- 2010-12-27 17:57:41.000 BioCASe protocol used. ---------------------- 2010-12-27 17:57:41.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-12-27 17:57:41.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-12-27 17:57:41.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-12-27 17:57:41.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2010-12-27 17:57:41.000 Unknown request type! Default to capabilities. ---------------------- 2010-12-27 17:57:41.000 Destination hostname could not be determined ---------------------- 2010-12-27 17:57:41.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2010-12-27 17:57:41.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2010-12-27 17:57:41.000 Reset CMF convenience cache data hash. ---------------------- 2010-12-27 17:57:41.000 Loading CMF from the source XML file. ---------------------- 2010-12-27 17:57:41.000 CMF Version 2.1 detected. ---------------------- 2010-12-27 17:57:41.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2010-12-27 17:57:41.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2010-12-27 17:57:41.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-12-27 17:57:41.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-12-27 17:57:41.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-12-27 17:57:41.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-12-27 17:57:41.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-12-27 17:57:41.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-12-27 21:00:50.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-12-27 21:00:49.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString IVeIKDxIik uispay@qbmuwj.com gqBiKAWvfOdLDLal tndnwtodqr USA 21414 W5LEd uispay@qbmuwj.com uispay@qbmuwj.com tndnwtodqr
### ERROR LOG The Logging Results: ---------------------- 2010-12-27 20:00:50.000 Logging started. ---------------------- 2010-12-27 20:00:50.000 BioCASe protocol used. ---------------------- 2010-12-27 20:00:50.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-12-27 20:00:50.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-12-27 20:00:50.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-12-27 20:00:50.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-12-27 20:00:50.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-12-27 21:00:49.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n IVeIKDxIik\n uispay@qbmuwj.com\n gqBiKAWvfOdLDLal\n tndnwtodqr\n USA\n 21414\n W5LEd\n uispay@qbmuwj.com\n uispay@qbmuwj.com\n tndnwtodqr\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-12-27 21:00:49.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n IVeIKDxIik\n uispay@qbmuwj.com\n gqBiKAWvfOdLDLal\n tndnwtodqr\n USA\n 21414\n W5LEd\n uispay@qbmuwj.com\n uispay@qbmuwj.com\n tndnwtodqr\n\n\n\n \n
'} ---------------------- 2010-12-27 20:00:50.000 Found online debuglevel setting: 1 ---------------------- 2010-12-27 20:00:50.000 Setting debuglevel from 0 to 1 ---------------------- 2010-12-27 20:00:50.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-12-27 20:00:50.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-12-27 20:00:50.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-12-27 20:00:50.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-12-27 20:00:51.000 Pickled file is of latest revision. ---------------------- 2010-12-27 20:00:51.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-12-27 20:00:51.000 Original filter string parsed:
2.4.2 2010-12-27 21:00:49.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString IVeIKDxIik uispay@qbmuwj.com gqBiKAWvfOdLDLal tndnwtodqr USA 21414 W5LEd uispay@qbmuwj.com uispay@qbmuwj.com tndnwtodqr
---------------------- 2010-12-27 20:00:51.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE IVeIKDxIik ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = uispay@qbmuwj.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE gqBiKAWvfOdLDLal ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE tndnwtodqr ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 21414 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE W5LEd ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = uispay@qbmuwj.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = uispay@qbmuwj.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE tndnwtodqr )) ---------------------- 2010-12-27 20:00:51.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE IVeIKDxIik ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = uispay@qbmuwj.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE gqBiKAWvfOdLDLal ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE tndnwtodqr ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 21414 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE W5LEd ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = uispay@qbmuwj.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = uispay@qbmuwj.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE tndnwtodqr )) ---------------------- 2010-12-27 20:00:51.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE IVeIKDxIik ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = uispay@qbmuwj.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE gqBiKAWvfOdLDLal ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE tndnwtodqr ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 21414 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE W5LEd ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = uispay@qbmuwj.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = uispay@qbmuwj.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE tndnwtodqr )) ---------------------- 2010-12-27 20:00:51.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE IVeIKDxIik ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = uispay@qbmuwj.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE gqBiKAWvfOdLDLal ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE tndnwtodqr ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 21414 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE W5LEd ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = uispay@qbmuwj.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = uispay@qbmuwj.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE tndnwtodqr )) ---------------------- 2010-12-27 20:00:51.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-12-27 20:00:51.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'IVeIKDxIik' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'uispay@qbmuwj.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'gqBiKAWvfOdLDLal' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'tndnwtodqr' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '21414' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'W5LEd' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'uispay@qbmuwj.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'uispay@qbmuwj.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'tndnwtodqr' ))' ---------------------- 2010-12-27 20:00:51.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "uispay@qbmuwj.com" ---------------------- 2010-12-27 20:00:51.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-12-27 22:31:58.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-12-27 22:31:57.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA email@gmail.com USA jonn2 USA 6895 USA email@gmail.com jonn2 jonn2
### ERROR LOG The Logging Results: ---------------------- 2010-12-27 21:31:58.000 Logging started. ---------------------- 2010-12-27 21:31:58.000 BioCASe protocol used. ---------------------- 2010-12-27 21:31:58.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-12-27 21:31:58.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-12-27 21:31:58.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-12-27 21:31:58.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-12-27 21:31:58.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-12-27 22:31:57.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n email@gmail.com\n USA\n jonn2\n USA\n 6895\n USA\n email@gmail.com\n jonn2\n jonn2\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-12-27 22:31:57.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n email@gmail.com\n USA\n jonn2\n USA\n 6895\n USA\n email@gmail.com\n jonn2\n jonn2\n\n\n\n \n
'} ---------------------- 2010-12-27 21:31:58.000 Found online debuglevel setting: 1 ---------------------- 2010-12-27 21:31:58.000 Setting debuglevel from 0 to 1 ---------------------- 2010-12-27 21:31:58.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-12-27 21:31:58.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-12-27 21:31:58.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-12-27 21:31:58.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-12-27 21:31:58.000 Pickled file is of latest revision. ---------------------- 2010-12-27 21:31:58.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-12-27 21:31:58.000 Original filter string parsed:
2.4.2 2010-12-27 22:31:57.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA email@gmail.com USA jonn2 USA 6895 USA email@gmail.com jonn2 jonn2
---------------------- 2010-12-27 21:31:58.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = email@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE jonn2 ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 6895 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = email@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = jonn2 ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jonn2 )) ---------------------- 2010-12-27 21:31:58.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = email@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE jonn2 ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 6895 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = email@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = jonn2 ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jonn2 )) ---------------------- 2010-12-27 21:31:58.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = email@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE jonn2 ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 6895 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = email@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = jonn2 ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jonn2 )) ---------------------- 2010-12-27 21:31:58.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = email@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE jonn2 ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 6895 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = email@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = jonn2 ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jonn2 )) ---------------------- 2010-12-27 21:31:58.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-12-27 21:31:58.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'email@gmail.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'jonn2' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '6895' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'email@gmail.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'jonn2' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'jonn2' ))' ---------------------- 2010-12-27 21:31:58.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "email@gmail.com" ---------------------- 2010-12-27 21:31:58.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2010-12-28 14:21:37.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2010-12-28 13:21:37.000 Logging started. ---------------------- 2010-12-28 13:21:37.000 BioCASe protocol used. ---------------------- 2010-12-28 13:21:37.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2010-12-28 13:21:37.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2010-12-28 13:21:37.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-12-28 13:21:37.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2010-12-28 13:21:37.000 Unknown request type! Default to capabilities. ---------------------- 2010-12-28 13:21:37.000 Destination hostname could not be determined ---------------------- 2010-12-28 13:21:37.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2010-12-28 13:21:37.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-12-28 13:21:37.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-12-28 13:21:37.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2010-12-28 13:21:37.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-12-28 13:21:37.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-12-28 13:21:37.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-12-28 14:21:42.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2010-12-28 13:21:42.000 Logging started. ---------------------- 2010-12-28 13:21:42.000 BioCASe protocol used. ---------------------- 2010-12-28 13:21:42.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-12-28 13:21:42.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-12-28 13:21:42.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-12-28 13:21:42.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2010-12-28 13:21:42.000 Unknown request type! Default to capabilities. ---------------------- 2010-12-28 13:21:42.000 Destination hostname could not be determined ---------------------- 2010-12-28 13:21:42.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2010-12-28 13:21:42.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2010-12-28 13:21:42.000 Reset CMF convenience cache data hash. ---------------------- 2010-12-28 13:21:42.000 Loading CMF from the source XML file. ---------------------- 2010-12-28 13:21:42.000 CMF Version 2.1 detected. ---------------------- 2010-12-28 13:21:43.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2010-12-28 13:21:43.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2010-12-28 13:21:43.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-12-28 13:21:43.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-12-28 13:21:43.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-12-28 13:21:43.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-12-28 13:21:43.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-12-28 13:21:43.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2010-12-28 18:17:38.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2010-12-28 17:17:38.000 Logging started. ---------------------- 2010-12-28 17:17:38.000 BioCASe protocol used. ---------------------- 2010-12-28 17:17:38.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2010-12-28 17:17:38.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2010-12-28 17:17:38.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-12-28 17:17:39.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2010-12-28 17:17:39.000 Unknown request type! Default to capabilities. ---------------------- 2010-12-28 17:17:39.000 Destination hostname could not be determined ---------------------- 2010-12-28 17:17:39.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2010-12-28 17:17:39.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-12-28 17:17:39.000 Pickled file is of latest revision. ---------------------- 2010-12-28 17:17:39.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2010-12-28 17:17:39.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2010-12-28 17:17:39.000 Reset CMF convenience cache data hash. ---------------------- 2010-12-28 17:17:39.000 Loading CMF from the source XML file. ---------------------- 2010-12-28 17:17:39.000 CMF Version 2.1 detected. ---------------------- 2010-12-28 17:17:39.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2010-12-28 17:17:39.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2010-12-28 17:17:39.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-12-28 17:17:39.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-12-28 17:17:39.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2010-12-29 21:31:21.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2010-12-29 20:31:21.000 Logging started. ---------------------- 2010-12-29 20:31:22.000 BioCASe protocol used. ---------------------- 2010-12-29 20:31:22.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2010-12-29 20:31:22.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2010-12-29 20:31:22.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-12-29 20:31:22.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2010-12-29 20:31:22.000 Unknown request type! Default to capabilities. ---------------------- 2010-12-29 20:31:22.000 Destination hostname could not be determined ---------------------- 2010-12-29 20:31:22.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2010-12-29 20:31:22.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2010-12-29 20:31:22.000 Reset CMF convenience cache data hash. ---------------------- 2010-12-29 20:31:22.000 Loading CMF from the source XML file. ---------------------- 2010-12-29 20:31:22.000 CMF Version 2.1 detected. ---------------------- 2010-12-29 20:31:22.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2010-12-29 20:31:22.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2010-12-29 20:31:22.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2010-12-29 20:31:22.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2010-12-29 20:31:22.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2010-12-29 20:31:22.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2010-12-29 20:31:22.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2010-12-29 20:31:22.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-12-30 15:59:41.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-12-30 15:59:40.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA vyfins@mxeoce.com USA stgohxszv USA 1152 USA vyfins@mxeoce.com stgohxszv stgohxszv
### ERROR LOG The Logging Results: ---------------------- 2010-12-30 14:59:41.000 Logging started. ---------------------- 2010-12-30 14:59:41.000 BioCASe protocol used. ---------------------- 2010-12-30 14:59:41.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-12-30 14:59:41.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-12-30 14:59:41.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-12-30 14:59:41.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-12-30 14:59:41.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-12-30 15:59:40.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n vyfins@mxeoce.com\n USA\n stgohxszv\n USA\n 1152\n USA\n vyfins@mxeoce.com\n stgohxszv\n stgohxszv\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-12-30 15:59:40.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n vyfins@mxeoce.com\n USA\n stgohxszv\n USA\n 1152\n USA\n vyfins@mxeoce.com\n stgohxszv\n stgohxszv\n\n\n\n \n
'} ---------------------- 2010-12-30 14:59:41.000 Found online debuglevel setting: 1 ---------------------- 2010-12-30 14:59:41.000 Setting debuglevel from 0 to 1 ---------------------- 2010-12-30 14:59:41.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-12-30 14:59:41.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-12-30 14:59:41.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-12-30 14:59:41.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-12-30 14:59:42.000 Pickled file is of latest revision. ---------------------- 2010-12-30 14:59:42.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-12-30 14:59:42.000 Original filter string parsed:
2.4.2 2010-12-30 15:59:40.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA vyfins@mxeoce.com USA stgohxszv USA 1152 USA vyfins@mxeoce.com stgohxszv stgohxszv
---------------------- 2010-12-30 14:59:42.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = vyfins@mxeoce.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE stgohxszv ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 1152 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = vyfins@mxeoce.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = stgohxszv ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE stgohxszv )) ---------------------- 2010-12-30 14:59:42.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = vyfins@mxeoce.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE stgohxszv ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 1152 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = vyfins@mxeoce.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = stgohxszv ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE stgohxszv )) ---------------------- 2010-12-30 14:59:42.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = vyfins@mxeoce.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE stgohxszv ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 1152 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = vyfins@mxeoce.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = stgohxszv ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE stgohxszv )) ---------------------- 2010-12-30 14:59:42.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = vyfins@mxeoce.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE stgohxszv ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 1152 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = vyfins@mxeoce.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = stgohxszv ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE stgohxszv )) ---------------------- 2010-12-30 14:59:42.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-12-30 14:59:42.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'vyfins@mxeoce.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'stgohxszv' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '1152' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'vyfins@mxeoce.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'stgohxszv' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'stgohxszv' ))' ---------------------- 2010-12-30 14:59:42.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "vyfins@mxeoce.com" ---------------------- 2010-12-30 14:59:42.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2010-12-31 01:28:58.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 160.45.63.17 <- to EntomoAlbertinaGBIF
0.1 2010-12-31 01:01:10.95 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
### ERROR LOG The Logging Results: ---------------------- 2010-12-31 00:28:58.000 Logging started. ---------------------- 2010-12-31 00:28:58.000 BioCASe protocol used. ---------------------- 2010-12-31 00:28:58.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2010-12-31 00:28:58.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2010-12-31 00:28:58.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-12-31 00:28:58.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-12-31 00:28:58.000 All parameters found in the request: {'debug': '1', 'query': '\n \n \n
\n 0.1\n 2010-12-31 01:01:10.95\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request': '\n \n \n
\n 0.1\n 2010-12-31 01:01:10.95\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n ', 'request_string': '\n \n \n
\n 0.1\n 2010-12-31 01:01:10.95\n \n \n search\n
\n \n http://www.tdwg.org/schemas/abcd/1.2\n http://www.tdwg.org/schemas/abcd/1.2\n \n \n \n True\n \n
\n '} ---------------------- 2010-12-31 00:28:58.000 Found online debuglevel setting: 1 ---------------------- 2010-12-31 00:28:58.000 Setting debuglevel from 0 to 1 ---------------------- 2010-12-31 00:28:58.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-12-31 00:28:58.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/1.2 ---------------------- 2010-12-31 00:28:58.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_1.20.xml' ---------------------- 2010-12-31 00:28:58.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2010-12-31 00:28:58.000 Pickled file is of latest revision. ---------------------- 2010-12-31 00:28:58.000 Original filter string parsed:
0.1 2010-12-31 01:01:10.95 search
http://www.tdwg.org/schemas/abcd/1.2 http://www.tdwg.org/schemas/abcd/1.2 True
---------------------- 2010-12-31 00:28:58.000 Filter created: None ---------------------- 2010-12-31 00:28:58.000 Compressed filter used: None ---------------------- 2010-12-31 00:28:58.000 Counting total matched records with filter=None ---------------------- 2010-12-31 00:28:58.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 101, in doRequest x = operationObj.count(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 106, in count return self._countTotalRecordsMatched(self.requestObj.filter) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 259, in _countTotalRecordsMatched return self.execCount(self.CMFObject.tableTreeObj.rootTableAliasPK, filterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 91, in execCount select = self.apply_template('count', [self.joinDBAttrObj(DBAttrObj)]) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/sql/base.py", line 113, in joinDBAttrObj return self.apply_template('attribute', [obj.table, obj.attr]) AttributeError: 'NoneType' object has no attribute 'table' ---------------------- 2010-12-31 00:28:58.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2010-12-31 19:47:29.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2010-12-31 19:47:28.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA email@gmail.com USA jonn2 USA 24954 USA email@gmail.com jonn2 jonn2
### ERROR LOG The Logging Results: ---------------------- 2010-12-31 18:47:29.000 Logging started. ---------------------- 2010-12-31 18:47:29.000 BioCASe protocol used. ---------------------- 2010-12-31 18:47:29.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2010-12-31 18:47:29.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2010-12-31 18:47:29.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2010-12-31 18:47:29.000 HTTP parameter 'query' used for building the request. ---------------------- 2010-12-31 18:47:29.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2010-12-31 19:47:28.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n email@gmail.com\n USA\n jonn2\n USA\n 24954\n USA\n email@gmail.com\n jonn2\n jonn2\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2010-12-31 19:47:28.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n email@gmail.com\n USA\n jonn2\n USA\n 24954\n USA\n email@gmail.com\n jonn2\n jonn2\n\n\n\n \n
'} ---------------------- 2010-12-31 18:47:29.000 Found online debuglevel setting: 1 ---------------------- 2010-12-31 18:47:29.000 Setting debuglevel from 0 to 1 ---------------------- 2010-12-31 18:47:29.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2010-12-31 18:47:29.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2010-12-31 18:47:29.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2010-12-31 18:47:29.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2010-12-31 18:47:30.000 Pickled file is of latest revision. ---------------------- 2010-12-31 18:47:30.000 Global CMF Filters integrated into the SQL: () ---------------------- 2010-12-31 18:47:30.000 Original filter string parsed:
2.4.2 2010-12-31 19:47:28.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA email@gmail.com USA jonn2 USA 24954 USA email@gmail.com jonn2 jonn2
---------------------- 2010-12-31 18:47:30.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = email@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE jonn2 ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 24954 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = email@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = jonn2 ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jonn2 )) ---------------------- 2010-12-31 18:47:30.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = email@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE jonn2 ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 24954 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = email@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = jonn2 ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jonn2 )) ---------------------- 2010-12-31 18:47:30.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = email@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE jonn2 ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 24954 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = email@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = jonn2 ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jonn2 )) ---------------------- 2010-12-31 18:47:30.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = email@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE jonn2 ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 24954 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = email@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = jonn2 ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jonn2 )) ---------------------- 2010-12-31 18:47:30.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2010-12-31 18:47:30.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'email@gmail.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'jonn2' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '24954' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'email@gmail.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'jonn2' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'jonn2' ))' ---------------------- 2010-12-31 18:47:30.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "email@gmail.com" ---------------------- 2010-12-31 18:47:30.000 Setting debuglevel from 1 to 3