**************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2012-01-03 01:59:46.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2012-01-03 00:59:46.000 Logging started. ---------------------- 2012-01-03 00:59:46.000 BioCASe protocol used. ---------------------- 2012-01-03 00:59:46.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2012-01-03 00:59:46.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2012-01-03 00:59:46.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-01-03 00:59:46.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2012-01-03 00:59:46.000 Unknown request type! Default to capabilities. ---------------------- 2012-01-03 00:59:46.000 Destination hostname could not be determined ---------------------- 2012-01-03 00:59:46.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2012-01-03 00:59:46.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-01-03 00:59:46.000 Pickled file is of latest revision. ---------------------- 2012-01-03 00:59:46.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2012-01-03 00:59:46.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2012-01-03 00:59:46.000 Reset CMF convenience cache data hash. ---------------------- 2012-01-03 00:59:46.000 Loading CMF from the source XML file. ---------------------- 2012-01-03 00:59:46.000 CMF Version 2.1 detected. ---------------------- 2012-01-03 00:59:46.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2012-01-03 00:59:46.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2012-01-03 00:59:46.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-01-03 00:59:46.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-01-03 00:59:46.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2012-01-03 02:50:50.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2012-01-03 01:50:50.000 Logging started. ---------------------- 2012-01-03 01:50:50.000 BioCASe protocol used. ---------------------- 2012-01-03 01:50:50.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2012-01-03 01:50:50.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2012-01-03 01:50:50.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-01-03 01:50:50.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2012-01-03 01:50:50.000 Unknown request type! Default to capabilities. ---------------------- 2012-01-03 01:50:50.000 Destination hostname could not be determined ---------------------- 2012-01-03 01:50:50.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2012-01-03 01:50:50.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2012-01-03 01:50:50.000 Reset CMF convenience cache data hash. ---------------------- 2012-01-03 01:50:50.000 Loading CMF from the source XML file. ---------------------- 2012-01-03 01:50:50.000 CMF Version 2.1 detected. ---------------------- 2012-01-03 01:50:50.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2012-01-03 01:50:50.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2012-01-03 01:50:50.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-01-03 01:50:50.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-01-03 01:50:50.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2012-01-03 01:50:50.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2012-01-03 01:50:50.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-01-03 01:50:50.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2012-01-10 03:19:47.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2012-01-10 02:19:47.000 Logging started. ---------------------- 2012-01-10 02:19:47.000 BioCASe protocol used. ---------------------- 2012-01-10 02:19:47.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2012-01-10 02:19:47.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2012-01-10 02:19:47.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-01-10 02:19:47.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2012-01-10 02:19:47.000 Unknown request type! Default to capabilities. ---------------------- 2012-01-10 02:19:47.000 Destination hostname could not be determined ---------------------- 2012-01-10 02:19:47.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2012-01-10 02:19:47.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-01-10 02:19:47.000 Pickled file is of latest revision. ---------------------- 2012-01-10 02:19:47.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2012-01-10 02:19:47.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2012-01-10 02:19:47.000 Reset CMF convenience cache data hash. ---------------------- 2012-01-10 02:19:47.000 Loading CMF from the source XML file. ---------------------- 2012-01-10 02:19:47.000 CMF Version 2.1 detected. ---------------------- 2012-01-10 02:19:47.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2012-01-10 02:19:47.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2012-01-10 02:19:47.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-01-10 02:19:47.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-01-10 02:19:47.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2012-01-10 03:19:48.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2012-01-10 02:19:48.000 Logging started. ---------------------- 2012-01-10 02:19:48.000 BioCASe protocol used. ---------------------- 2012-01-10 02:19:48.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2012-01-10 02:19:48.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2012-01-10 02:19:48.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-01-10 02:19:48.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2012-01-10 02:19:48.000 Unknown request type! Default to capabilities. ---------------------- 2012-01-10 02:19:48.000 Destination hostname could not be determined ---------------------- 2012-01-10 02:19:48.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2012-01-10 02:19:48.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2012-01-10 02:19:48.000 Reset CMF convenience cache data hash. ---------------------- 2012-01-10 02:19:48.000 Loading CMF from the source XML file. ---------------------- 2012-01-10 02:19:48.000 CMF Version 2.1 detected. ---------------------- 2012-01-10 02:19:48.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2012-01-10 02:19:48.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2012-01-10 02:19:48.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-01-10 02:19:48.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-01-10 02:19:48.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2012-01-10 02:19:48.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2012-01-10 02:19:48.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-01-10 02:19:48.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2012-01-10 03:19:50.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2012-01-10 02:19:50.000 Logging started. ---------------------- 2012-01-10 02:19:50.000 BioCASe protocol used. ---------------------- 2012-01-10 02:19:50.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2012-01-10 02:19:50.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2012-01-10 02:19:50.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-01-10 02:19:50.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2012-01-10 02:19:50.000 Unknown request type! Default to capabilities. ---------------------- 2012-01-10 02:19:50.000 Destination hostname could not be determined ---------------------- 2012-01-10 02:19:50.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2012-01-10 02:19:50.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-01-10 02:19:50.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-01-10 02:19:50.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2012-01-10 02:19:50.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-01-10 02:19:50.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-01-10 02:19:50.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2012-01-11 05:53:25.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to EntomoAlbertinaGBIFBck
2.4.2 2012-01-11 05:53:25.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString wazvtra USA USA 876252 USA
### ERROR LOG The Logging Results: ---------------------- 2012-01-11 04:53:25.000 Logging started. ---------------------- 2012-01-11 04:53:25.000 BioCASe protocol used. ---------------------- 2012-01-11 04:53:25.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2012-01-11 04:53:25.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2012-01-11 04:53:25.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-01-11 04:53:25.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-01-11 04:53:25.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-01-11 05:53:25.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n wazvtra\n USA\n USA\n 876252\n USA\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-01-11 05:53:25.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n wazvtra\n USA\n USA\n 876252\n USA\n\n\n\n \n
'} ---------------------- 2012-01-11 04:53:25.000 Found online debuglevel setting: 1 ---------------------- 2012-01-11 04:53:25.000 Setting debuglevel from 0 to 1 ---------------------- 2012-01-11 04:53:25.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-01-11 04:53:25.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-01-11 04:53:25.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2012-01-11 04:53:25.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-01-11 04:53:25.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 231, in getCMFobject CMFObject.loadCMFdata(self.psfObj.getCMFfilename(namespace), psfObj=self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-01-11 04:53:25.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 118, in scan self.CMFObject = self.getCMFobject(self.requestObj.reqSchema, altRootTableKey=self.altRootTableAlias) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 237, in getCMFobject raise CMFError(log=self.logObj, cmf=namespace) CMFError: ---------------------- 2012-01-11 04:53:25.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2012-01-11 21:18:45.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2012-01-11 20:18:45.000 Logging started. ---------------------- 2012-01-11 20:18:45.000 BioCASe protocol used. ---------------------- 2012-01-11 20:18:45.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2012-01-11 20:18:45.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2012-01-11 20:18:45.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-01-11 20:18:45.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2012-01-11 20:18:45.000 Unknown request type! Default to capabilities. ---------------------- 2012-01-11 20:18:45.000 Destination hostname could not be determined ---------------------- 2012-01-11 20:18:45.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2012-01-11 20:18:45.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-01-11 20:18:45.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-01-11 20:18:45.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2012-01-11 20:18:45.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-01-11 20:18:45.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-01-11 20:18:45.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2012-01-13 14:16:58.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2012-01-13 14:16:58.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString eHCTLHTMTqSECQCEu IgVYOrYVr GUWmqPCcLmgiRPoP ahegoawq viwXKYRpW BDJNfBGvmdlelG PZWIRXYmSifBbUQf awWUqaHISnQTlznCGB xmjQcbpXjNW ahegoawq
### ERROR LOG The Logging Results: ---------------------- 2012-01-13 13:16:58.000 Logging started. ---------------------- 2012-01-13 13:16:58.000 BioCASe protocol used. ---------------------- 2012-01-13 13:16:58.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2012-01-13 13:16:58.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2012-01-13 13:16:58.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-01-13 13:16:58.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-01-13 13:16:58.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-01-13 14:16:58.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n eHCTLHTMTqSECQCEu\n IgVYOrYVr\n GUWmqPCcLmgiRPoP\n ahegoawq\n viwXKYRpW\n BDJNfBGvmdlelG\n PZWIRXYmSifBbUQf\n awWUqaHISnQTlznCGB\n xmjQcbpXjNW\n ahegoawq\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-01-13 14:16:58.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n eHCTLHTMTqSECQCEu\n IgVYOrYVr\n GUWmqPCcLmgiRPoP\n ahegoawq\n viwXKYRpW\n BDJNfBGvmdlelG\n PZWIRXYmSifBbUQf\n awWUqaHISnQTlznCGB\n xmjQcbpXjNW\n ahegoawq\n\n\n\n \n
'} ---------------------- 2012-01-13 13:16:58.000 Found online debuglevel setting: 1 ---------------------- 2012-01-13 13:16:58.000 Setting debuglevel from 0 to 1 ---------------------- 2012-01-13 13:16:58.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-01-13 13:16:58.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-01-13 13:16:58.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2012-01-13 13:16:58.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-01-13 13:16:58.000 Pickled file is of latest revision. ---------------------- 2012-01-13 13:16:58.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-01-13 13:16:58.000 Original filter string parsed:
2.4.2 2012-01-13 14:16:58.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString eHCTLHTMTqSECQCEu IgVYOrYVr GUWmqPCcLmgiRPoP ahegoawq viwXKYRpW BDJNfBGvmdlelG PZWIRXYmSifBbUQf awWUqaHISnQTlznCGB xmjQcbpXjNW ahegoawq
---------------------- 2012-01-13 13:16:58.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE eHCTLHTMTqSECQCEu ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = IgVYOrYVr ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE GUWmqPCcLmgiRPoP ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE ahegoawq ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE viwXKYRpW ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE BDJNfBGvmdlelG ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE PZWIRXYmSifBbUQf ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = awWUqaHISnQTlznCGB ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = xmjQcbpXjNW ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE ahegoawq )) ---------------------- 2012-01-13 13:16:58.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE eHCTLHTMTqSECQCEu ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = IgVYOrYVr ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE GUWmqPCcLmgiRPoP ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE ahegoawq ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE viwXKYRpW ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE BDJNfBGvmdlelG ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE PZWIRXYmSifBbUQf ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = awWUqaHISnQTlznCGB ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = xmjQcbpXjNW ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE ahegoawq )) ---------------------- 2012-01-13 13:16:58.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE eHCTLHTMTqSECQCEu ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = IgVYOrYVr ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE GUWmqPCcLmgiRPoP ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE ahegoawq ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE viwXKYRpW ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE BDJNfBGvmdlelG ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE PZWIRXYmSifBbUQf ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = awWUqaHISnQTlznCGB ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = xmjQcbpXjNW ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE ahegoawq )) ---------------------- 2012-01-13 13:16:58.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE eHCTLHTMTqSECQCEu ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = IgVYOrYVr ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE GUWmqPCcLmgiRPoP ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE ahegoawq ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE viwXKYRpW ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE BDJNfBGvmdlelG ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE PZWIRXYmSifBbUQf ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = awWUqaHISnQTlznCGB ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = xmjQcbpXjNW ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE ahegoawq )) ---------------------- 2012-01-13 13:16:58.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2012-01-13 13:16:58.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'eHCTLHTMTqSECQCEu' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'IgVYOrYVr' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'GUWmqPCcLmgiRPoP' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'ahegoawq' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'viwXKYRpW' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'BDJNfBGvmdlelG' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'PZWIRXYmSifBbUQf' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'awWUqaHISnQTlznCGB' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'xmjQcbpXjNW' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'ahegoawq' ))' ---------------------- 2012-01-13 13:16:58.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "IgVYOrYVr" ---------------------- 2012-01-13 13:16:58.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2012-01-15 08:51:28.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2012-01-15 07:51:28.000 Logging started. ---------------------- 2012-01-15 07:51:28.000 BioCASe protocol used. ---------------------- 2012-01-15 07:51:28.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2012-01-15 07:51:28.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2012-01-15 07:51:28.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-01-15 07:51:28.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2012-01-15 07:51:28.000 Unknown request type! Default to capabilities. ---------------------- 2012-01-15 07:51:28.000 Destination hostname could not be determined ---------------------- 2012-01-15 07:51:28.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2012-01-15 07:51:28.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-01-15 07:51:28.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-01-15 07:51:28.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2012-01-15 07:51:28.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-01-15 07:51:28.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-01-15 07:51:28.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2012-01-16 00:51:08.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2012-01-16 00:51:08.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA mgpxfi@nhgzvq.com USA uzbunispa USA 82552 hV9em mgpxfi@nhgzvq.com mgpxfi@nhgzvq.com uzbunispa
### ERROR LOG The Logging Results: ---------------------- 2012-01-15 23:51:08.000 Logging started. ---------------------- 2012-01-15 23:51:08.000 BioCASe protocol used. ---------------------- 2012-01-15 23:51:08.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2012-01-15 23:51:08.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2012-01-15 23:51:08.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-01-15 23:51:08.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-01-15 23:51:08.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-01-16 00:51:08.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n mgpxfi@nhgzvq.com\n USA\n uzbunispa\n USA\n 82552\n hV9em\n mgpxfi@nhgzvq.com\n mgpxfi@nhgzvq.com\n uzbunispa\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-01-16 00:51:08.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n mgpxfi@nhgzvq.com\n USA\n uzbunispa\n USA\n 82552\n hV9em\n mgpxfi@nhgzvq.com\n mgpxfi@nhgzvq.com\n uzbunispa\n\n\n\n \n
'} ---------------------- 2012-01-15 23:51:08.000 Found online debuglevel setting: 1 ---------------------- 2012-01-15 23:51:08.000 Setting debuglevel from 0 to 1 ---------------------- 2012-01-15 23:51:08.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-01-15 23:51:08.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-01-15 23:51:08.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2012-01-15 23:51:08.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-01-15 23:51:08.000 Pickled file is of latest revision. ---------------------- 2012-01-15 23:51:08.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-01-15 23:51:08.000 Original filter string parsed:
2.4.2 2012-01-16 00:51:08.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA mgpxfi@nhgzvq.com USA uzbunispa USA 82552 hV9em mgpxfi@nhgzvq.com mgpxfi@nhgzvq.com uzbunispa
---------------------- 2012-01-15 23:51:08.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = mgpxfi@nhgzvq.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE uzbunispa ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 82552 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE hV9em ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = mgpxfi@nhgzvq.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = mgpxfi@nhgzvq.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE uzbunispa )) ---------------------- 2012-01-15 23:51:08.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = mgpxfi@nhgzvq.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE uzbunispa ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 82552 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE hV9em ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = mgpxfi@nhgzvq.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = mgpxfi@nhgzvq.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE uzbunispa )) ---------------------- 2012-01-15 23:51:08.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = mgpxfi@nhgzvq.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE uzbunispa ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 82552 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE hV9em ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = mgpxfi@nhgzvq.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = mgpxfi@nhgzvq.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE uzbunispa )) ---------------------- 2012-01-15 23:51:08.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = mgpxfi@nhgzvq.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE uzbunispa ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 82552 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE hV9em ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = mgpxfi@nhgzvq.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = mgpxfi@nhgzvq.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE uzbunispa )) ---------------------- 2012-01-15 23:51:08.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2012-01-15 23:51:08.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'mgpxfi@nhgzvq.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'uzbunispa' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '82552' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'hV9em' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'mgpxfi@nhgzvq.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'mgpxfi@nhgzvq.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'uzbunispa' ))' ---------------------- 2012-01-15 23:51:08.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "mgpxfi@nhgzvq.com" ---------------------- 2012-01-15 23:51:08.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2012-01-16 01:38:51.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2012-01-16 00:38:51.000 Logging started. ---------------------- 2012-01-16 00:38:51.000 BioCASe protocol used. ---------------------- 2012-01-16 00:38:51.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2012-01-16 00:38:51.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2012-01-16 00:38:51.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-01-16 00:38:51.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2012-01-16 00:38:51.000 Unknown request type! Default to capabilities. ---------------------- 2012-01-16 00:38:51.000 Destination hostname could not be determined ---------------------- 2012-01-16 00:38:51.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2012-01-16 00:38:51.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2012-01-16 00:38:51.000 Reset CMF convenience cache data hash. ---------------------- 2012-01-16 00:38:51.000 Loading CMF from the source XML file. ---------------------- 2012-01-16 00:38:51.000 CMF Version 2.1 detected. ---------------------- 2012-01-16 00:38:51.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2012-01-16 00:38:51.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2012-01-16 00:38:51.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-01-16 00:38:51.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-01-16 00:38:51.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2012-01-16 00:38:51.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2012-01-16 00:38:51.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-01-16 00:38:51.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2012-01-21 05:28:56.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2012-01-21 04:28:56.000 Logging started. ---------------------- 2012-01-21 04:28:56.000 BioCASe protocol used. ---------------------- 2012-01-21 04:28:56.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2012-01-21 04:28:56.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2012-01-21 04:28:56.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-01-21 04:28:56.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2012-01-21 04:28:56.000 Unknown request type! Default to capabilities. ---------------------- 2012-01-21 04:28:56.000 Destination hostname could not be determined ---------------------- 2012-01-21 04:28:56.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2012-01-21 04:28:56.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-01-21 04:28:56.000 Pickled file is of latest revision. ---------------------- 2012-01-21 04:28:56.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2012-01-21 04:28:56.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2012-01-21 04:28:56.000 Reset CMF convenience cache data hash. ---------------------- 2012-01-21 04:28:56.000 Loading CMF from the source XML file. ---------------------- 2012-01-21 04:28:56.000 CMF Version 2.1 detected. ---------------------- 2012-01-21 04:28:56.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2012-01-21 04:28:56.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2012-01-21 04:28:56.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-01-21 04:28:56.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-01-21 04:28:56.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2012-01-24 16:39:24.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2012-01-24 15:39:24.000 Logging started. ---------------------- 2012-01-24 15:39:24.000 BioCASe protocol used. ---------------------- 2012-01-24 15:39:24.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2012-01-24 15:39:24.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2012-01-24 15:39:24.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-01-24 15:39:24.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2012-01-24 15:39:24.000 Unknown request type! Default to capabilities. ---------------------- 2012-01-24 15:39:24.000 Destination hostname could not be determined ---------------------- 2012-01-24 15:39:24.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2012-01-24 15:39:24.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2012-01-24 15:39:24.000 Reset CMF convenience cache data hash. ---------------------- 2012-01-24 15:39:24.000 Loading CMF from the source XML file. ---------------------- 2012-01-24 15:39:24.000 CMF Version 2.1 detected. ---------------------- 2012-01-24 15:39:24.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2012-01-24 15:39:24.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2012-01-24 15:39:24.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-01-24 15:39:24.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-01-24 15:39:24.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2012-01-24 15:39:24.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2012-01-24 15:39:24.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-01-24 15:39:24.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2012-01-30 00:04:30.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2012-01-29 23:04:30.000 Logging started. ---------------------- 2012-01-29 23:04:30.000 BioCASe protocol used. ---------------------- 2012-01-29 23:04:30.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2012-01-29 23:04:30.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2012-01-29 23:04:30.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-01-29 23:04:30.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2012-01-29 23:04:30.000 Unknown request type! Default to capabilities. ---------------------- 2012-01-29 23:04:30.000 Destination hostname could not be determined ---------------------- 2012-01-29 23:04:30.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2012-01-29 23:04:30.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2012-01-29 23:04:30.000 Reset CMF convenience cache data hash. ---------------------- 2012-01-29 23:04:30.000 Loading CMF from the source XML file. ---------------------- 2012-01-29 23:04:30.000 CMF Version 2.1 detected. ---------------------- 2012-01-29 23:04:30.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2012-01-29 23:04:30.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2012-01-29 23:04:30.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-01-29 23:04:30.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-01-29 23:04:30.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2012-01-29 23:04:30.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2012-01-29 23:04:30.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-01-29 23:04:30.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2012-02-01 03:13:58.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2012-02-01 02:13:58.000 Logging started. ---------------------- 2012-02-01 02:13:58.000 BioCASe protocol used. ---------------------- 2012-02-01 02:13:58.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2012-02-01 02:13:58.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2012-02-01 02:13:58.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-02-01 02:13:58.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2012-02-01 02:13:58.000 Unknown request type! Default to capabilities. ---------------------- 2012-02-01 02:13:58.000 Destination hostname could not be determined ---------------------- 2012-02-01 02:13:58.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2012-02-01 02:13:58.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2012-02-01 02:13:58.000 Reset CMF convenience cache data hash. ---------------------- 2012-02-01 02:13:58.000 Loading CMF from the source XML file. ---------------------- 2012-02-01 02:13:58.000 CMF Version 2.1 detected. ---------------------- 2012-02-01 02:13:58.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2012-02-01 02:13:58.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2012-02-01 02:13:58.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-02-01 02:13:58.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-02-01 02:13:58.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2012-02-01 02:13:58.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2012-02-01 02:13:58.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-02-01 02:13:58.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2012-02-01 06:12:38.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2012-02-01 05:12:38.000 Logging started. ---------------------- 2012-02-01 05:12:38.000 BioCASe protocol used. ---------------------- 2012-02-01 05:12:38.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2012-02-01 05:12:38.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2012-02-01 05:12:38.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-02-01 05:12:38.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2012-02-01 05:12:38.000 Unknown request type! Default to capabilities. ---------------------- 2012-02-01 05:12:38.000 Destination hostname could not be determined ---------------------- 2012-02-01 05:12:38.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2012-02-01 05:12:38.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-02-01 05:12:38.000 Pickled file is of latest revision. ---------------------- 2012-02-01 05:12:38.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2012-02-01 05:12:38.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2012-02-01 05:12:38.000 Reset CMF convenience cache data hash. ---------------------- 2012-02-01 05:12:38.000 Loading CMF from the source XML file. ---------------------- 2012-02-01 05:12:38.000 CMF Version 2.1 detected. ---------------------- 2012-02-01 05:12:38.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2012-02-01 05:12:38.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2012-02-01 05:12:38.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-02-01 05:12:38.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-02-01 05:12:38.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2012-02-01 18:13:37.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2012-02-01 18:13:37.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA iufxvt@scyuub.com USA xtknza USA 64369 6gByCr iufxvt@scyuub.com iufxvt@scyuub.com xtknza
### ERROR LOG The Logging Results: ---------------------- 2012-02-01 17:13:37.000 Logging started. ---------------------- 2012-02-01 17:13:37.000 BioCASe protocol used. ---------------------- 2012-02-01 17:13:37.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2012-02-01 17:13:37.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2012-02-01 17:13:37.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-02-01 17:13:37.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-02-01 17:13:37.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-02-01 18:13:37.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n iufxvt@scyuub.com\n USA\n xtknza\n USA\n 64369\n 6gByCr\n iufxvt@scyuub.com\n iufxvt@scyuub.com\n xtknza\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-02-01 18:13:37.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n iufxvt@scyuub.com\n USA\n xtknza\n USA\n 64369\n 6gByCr\n iufxvt@scyuub.com\n iufxvt@scyuub.com\n xtknza\n\n\n\n \n
'} ---------------------- 2012-02-01 17:13:37.000 Found online debuglevel setting: 1 ---------------------- 2012-02-01 17:13:37.000 Setting debuglevel from 0 to 1 ---------------------- 2012-02-01 17:13:37.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-02-01 17:13:37.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-02-01 17:13:37.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2012-02-01 17:13:37.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-02-01 17:13:37.000 Pickled file is of latest revision. ---------------------- 2012-02-01 17:13:37.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-02-01 17:13:37.000 Original filter string parsed:
2.4.2 2012-02-01 18:13:37.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA iufxvt@scyuub.com USA xtknza USA 64369 6gByCr iufxvt@scyuub.com iufxvt@scyuub.com xtknza
---------------------- 2012-02-01 17:13:37.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = iufxvt@scyuub.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE xtknza ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 64369 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 6gByCr ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = iufxvt@scyuub.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = iufxvt@scyuub.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE xtknza )) ---------------------- 2012-02-01 17:13:37.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = iufxvt@scyuub.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE xtknza ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 64369 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 6gByCr ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = iufxvt@scyuub.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = iufxvt@scyuub.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE xtknza )) ---------------------- 2012-02-01 17:13:37.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = iufxvt@scyuub.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE xtknza ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 64369 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 6gByCr ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = iufxvt@scyuub.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = iufxvt@scyuub.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE xtknza )) ---------------------- 2012-02-01 17:13:37.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = iufxvt@scyuub.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE xtknza ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 64369 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 6gByCr ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = iufxvt@scyuub.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = iufxvt@scyuub.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE xtknza )) ---------------------- 2012-02-01 17:13:37.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2012-02-01 17:13:37.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'iufxvt@scyuub.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'xtknza' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '64369' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE '6gByCr' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'iufxvt@scyuub.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'iufxvt@scyuub.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'xtknza' ))' ---------------------- 2012-02-01 17:13:37.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "iufxvt@scyuub.com" ---------------------- 2012-02-01 17:13:37.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2012-02-06 21:48:56.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2012-02-06 20:48:56.000 Logging started. ---------------------- 2012-02-06 20:48:56.000 BioCASe protocol used. ---------------------- 2012-02-06 20:48:56.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2012-02-06 20:48:56.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2012-02-06 20:48:56.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-02-06 20:48:56.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2012-02-06 20:48:56.000 Unknown request type! Default to capabilities. ---------------------- 2012-02-06 20:48:56.000 Destination hostname could not be determined ---------------------- 2012-02-06 20:48:56.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2012-02-06 20:48:56.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-02-06 20:48:56.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-02-06 20:48:56.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2012-02-06 20:48:56.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-02-06 20:48:56.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-02-06 20:48:56.000 Setting debuglevel from 0 to 3 **************************************** TRAINING **************************************** ### ERROR TIME 2012-02-10 18:39:35.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to training
2.4.2 2012-02-10 18:39:35.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString vvgxybgucp USA USA 82267 USA
### ERROR LOG The Logging Results: ---------------------- 2012-02-10 17:39:35.000 Logging started. ---------------------- 2012-02-10 17:39:35.000 BioCASe protocol used. ---------------------- 2012-02-10 17:39:35.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['training']} ---------------------- 2012-02-10 17:39:35.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/training/provider_setup_file.xml ---------------------- 2012-02-10 17:39:35.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-02-10 17:39:35.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-02-10 17:39:35.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-02-10 18:39:35.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n vvgxybgucp\n USA\n USA\n 82267\n USA\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-02-10 18:39:35.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n vvgxybgucp\n USA\n USA\n 82267\n USA\n\n\n\n \n
'} ---------------------- 2012-02-10 17:39:35.000 Found online debuglevel setting: 1 ---------------------- 2012-02-10 17:39:35.000 Setting debuglevel from 0 to 1 ---------------------- 2012-02-10 17:39:35.000 The biocase.wrapper.dbmod.dbmod_mysql database module has been used. ---------------------- 2012-02-10 17:39:38.000 No DB connection could be established. Please verify DB state and connection parameters in your provider_setup_file.xml Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_mysql.py", line 55, in createDBconnection return MySQLdb.connect( host=self.psfObj.dbIP, db=self.psfObj.datasource, user=self.psfObj.user, passwd=self.psfObj.password ) File "/usr/lib/python2.4/site-packages/MySQLdb/__init__.py", line 66, in Connect return Connection(*args, **kwargs) File "/usr/lib/python2.4/site-packages/MySQLdb/connections.py", line 134, in __init__ super(Connection, self).__init__(*args, **kwargs2) OperationalError: (2003, "Can't connect to MySQL server on '192.168.2.252' (111)") ---------------------- 2012-02-10 17:39:38.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 75, in doRequest operationObj = getOperationsObjectForDBMod(self.psfObj, self.logObj, self.responseObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 354, in getOperationsObjectForDBMod operationsObj = operations(psfObj, logObj, removeCMFSubtreePaths, altRootTableAlias) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 68, in __init__ DBModuleClass.__init__(self, psfObj, logObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_mysql.py", line 37, in __init__ DBBasemodule.__init__(self, psfObj, logObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 43, in __init__ self.conn = self.createDBconnection() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_mysql.py", line 57, in createDBconnection raise ConnectionError(log=self.logObj) ConnectionError: ---------------------- 2012-02-10 17:39:38.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2012-02-12 09:06:16.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to EntomoAlbertinaBck
2.4.2 2012-02-12 09:06:16.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString knahgp USA USA 288080 USA
### ERROR LOG The Logging Results: ---------------------- 2012-02-12 08:06:16.000 Logging started. ---------------------- 2012-02-12 08:06:16.000 BioCASe protocol used. ---------------------- 2012-02-12 08:06:16.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2012-02-12 08:06:16.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2012-02-12 08:06:16.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-02-12 08:06:16.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-02-12 08:06:16.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-02-12 09:06:16.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n knahgp\n USA\n USA\n 288080\n USA\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-02-12 09:06:16.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n knahgp\n USA\n USA\n 288080\n USA\n\n\n\n \n
'} ---------------------- 2012-02-12 08:06:16.000 Found online debuglevel setting: 1 ---------------------- 2012-02-12 08:06:16.000 Setting debuglevel from 0 to 1 ---------------------- 2012-02-12 08:06:16.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-02-12 08:06:16.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-02-12 08:06:16.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2012-02-12 08:06:16.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2012-02-12 08:06:16.000 Reset CMF convenience cache data hash. ---------------------- 2012-02-12 08:06:16.000 Loading CMF from the source XML file. ---------------------- 2012-02-12 08:06:16.000 CMF Version 2.1 detected. ---------------------- 2012-02-12 08:06:16.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2012-02-12 08:06:16.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2012-02-12 08:06:16.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-02-12 08:06:16.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 231, in getCMFobject CMFObject.loadCMFdata(self.psfObj.getCMFfilename(namespace), psfObj=self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-02-12 08:06:16.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 118, in scan self.CMFObject = self.getCMFobject(self.requestObj.reqSchema, altRootTableKey=self.altRootTableAlias) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 237, in getCMFobject raise CMFError(log=self.logObj, cmf=namespace) CMFError: ---------------------- 2012-02-12 08:06:16.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2012-02-12 20:20:44.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2012-02-12 19:20:44.000 Logging started. ---------------------- 2012-02-12 19:20:44.000 BioCASe protocol used. ---------------------- 2012-02-12 19:20:44.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2012-02-12 19:20:44.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2012-02-12 19:20:44.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-02-12 19:20:44.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2012-02-12 19:20:44.000 Unknown request type! Default to capabilities. ---------------------- 2012-02-12 19:20:44.000 Destination hostname could not be determined ---------------------- 2012-02-12 19:20:44.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2012-02-12 19:20:44.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2012-02-12 19:20:44.000 Reset CMF convenience cache data hash. ---------------------- 2012-02-12 19:20:44.000 Loading CMF from the source XML file. ---------------------- 2012-02-12 19:20:44.000 CMF Version 2.1 detected. ---------------------- 2012-02-12 19:20:44.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2012-02-12 19:20:44.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2012-02-12 19:20:44.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-02-12 19:20:44.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-02-12 19:20:44.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2012-02-12 19:20:44.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2012-02-12 19:20:44.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-02-12 19:20:44.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2012-02-13 06:23:48.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to EntomoAlbertinaGBIFBck
2.4.2 2012-02-13 06:23:48.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString imixbgmc USA USA 1650 USA
### ERROR LOG The Logging Results: ---------------------- 2012-02-13 05:23:48.000 Logging started. ---------------------- 2012-02-13 05:23:48.000 BioCASe protocol used. ---------------------- 2012-02-13 05:23:48.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2012-02-13 05:23:48.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2012-02-13 05:23:48.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-02-13 05:23:48.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-02-13 05:23:48.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-02-13 06:23:48.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n imixbgmc\n USA\n USA\n 1650\n USA\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-02-13 06:23:48.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n imixbgmc\n USA\n USA\n 1650\n USA\n\n\n\n \n
'} ---------------------- 2012-02-13 05:23:48.000 Found online debuglevel setting: 1 ---------------------- 2012-02-13 05:23:48.000 Setting debuglevel from 0 to 1 ---------------------- 2012-02-13 05:23:48.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-02-13 05:23:48.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-02-13 05:23:48.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2012-02-13 05:23:48.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-02-13 05:23:48.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 231, in getCMFobject CMFObject.loadCMFdata(self.psfObj.getCMFfilename(namespace), psfObj=self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-02-13 05:23:48.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 118, in scan self.CMFObject = self.getCMFobject(self.requestObj.reqSchema, altRootTableKey=self.altRootTableAlias) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 237, in getCMFobject raise CMFError(log=self.logObj, cmf=namespace) CMFError: ---------------------- 2012-02-13 05:23:48.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2012-02-13 11:29:14.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2012-02-13 11:29:14.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA cdcreq@heihbc.com USA ayoudkwkewx USA 921521 xrXbq cdcreq@heihbc.com cdcreq@heihbc.com ayoudkwkewx
### ERROR LOG The Logging Results: ---------------------- 2012-02-13 10:29:14.000 Logging started. ---------------------- 2012-02-13 10:29:14.000 BioCASe protocol used. ---------------------- 2012-02-13 10:29:14.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2012-02-13 10:29:14.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2012-02-13 10:29:14.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-02-13 10:29:14.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-02-13 10:29:14.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-02-13 11:29:14.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n cdcreq@heihbc.com\n USA\n ayoudkwkewx\n USA\n 921521\n xrXbq\n cdcreq@heihbc.com\n cdcreq@heihbc.com\n ayoudkwkewx\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-02-13 11:29:14.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n cdcreq@heihbc.com\n USA\n ayoudkwkewx\n USA\n 921521\n xrXbq\n cdcreq@heihbc.com\n cdcreq@heihbc.com\n ayoudkwkewx\n\n\n\n \n
'} ---------------------- 2012-02-13 10:29:14.000 Found online debuglevel setting: 1 ---------------------- 2012-02-13 10:29:14.000 Setting debuglevel from 0 to 1 ---------------------- 2012-02-13 10:29:14.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-02-13 10:29:14.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-02-13 10:29:14.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2012-02-13 10:29:14.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-02-13 10:29:15.000 Pickled file is of latest revision. ---------------------- 2012-02-13 10:29:15.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-02-13 10:29:15.000 Original filter string parsed:
2.4.2 2012-02-13 11:29:14.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA cdcreq@heihbc.com USA ayoudkwkewx USA 921521 xrXbq cdcreq@heihbc.com cdcreq@heihbc.com ayoudkwkewx
---------------------- 2012-02-13 10:29:15.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = cdcreq@heihbc.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE ayoudkwkewx ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 921521 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE xrXbq ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = cdcreq@heihbc.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = cdcreq@heihbc.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE ayoudkwkewx )) ---------------------- 2012-02-13 10:29:15.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = cdcreq@heihbc.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE ayoudkwkewx ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 921521 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE xrXbq ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = cdcreq@heihbc.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = cdcreq@heihbc.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE ayoudkwkewx )) ---------------------- 2012-02-13 10:29:15.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = cdcreq@heihbc.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE ayoudkwkewx ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 921521 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE xrXbq ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = cdcreq@heihbc.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = cdcreq@heihbc.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE ayoudkwkewx )) ---------------------- 2012-02-13 10:29:15.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = cdcreq@heihbc.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE ayoudkwkewx ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 921521 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE xrXbq ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = cdcreq@heihbc.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = cdcreq@heihbc.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE ayoudkwkewx )) ---------------------- 2012-02-13 10:29:15.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2012-02-13 10:29:15.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'cdcreq@heihbc.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'ayoudkwkewx' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '921521' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'xrXbq' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'cdcreq@heihbc.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'cdcreq@heihbc.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'ayoudkwkewx' ))' ---------------------- 2012-02-13 10:29:15.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "cdcreq@heihbc.com" ---------------------- 2012-02-13 10:29:15.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2012-02-14 04:50:20.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2012-02-14 03:50:20.000 Logging started. ---------------------- 2012-02-14 03:50:20.000 BioCASe protocol used. ---------------------- 2012-02-14 03:50:20.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2012-02-14 03:50:20.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2012-02-14 03:50:20.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-02-14 03:50:20.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2012-02-14 03:50:20.000 Unknown request type! Default to capabilities. ---------------------- 2012-02-14 03:50:20.000 Destination hostname could not be determined ---------------------- 2012-02-14 03:50:20.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2012-02-14 03:50:20.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-02-14 03:50:20.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-02-14 03:50:20.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2012-02-14 03:50:20.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-02-14 03:50:20.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-02-14 03:50:20.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2012-02-14 04:50:24.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2012-02-14 03:50:24.000 Logging started. ---------------------- 2012-02-14 03:50:24.000 BioCASe protocol used. ---------------------- 2012-02-14 03:50:24.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2012-02-14 03:50:24.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2012-02-14 03:50:24.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-02-14 03:50:24.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2012-02-14 03:50:24.000 Unknown request type! Default to capabilities. ---------------------- 2012-02-14 03:50:24.000 Destination hostname could not be determined ---------------------- 2012-02-14 03:50:24.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2012-02-14 03:50:24.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2012-02-14 03:50:24.000 Reset CMF convenience cache data hash. ---------------------- 2012-02-14 03:50:24.000 Loading CMF from the source XML file. ---------------------- 2012-02-14 03:50:24.000 CMF Version 2.1 detected. ---------------------- 2012-02-14 03:50:25.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2012-02-14 03:50:25.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2012-02-14 03:50:25.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-02-14 03:50:25.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-02-14 03:50:25.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2012-02-14 03:50:25.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2012-02-14 03:50:25.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-02-14 03:50:25.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2012-02-14 04:50:28.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2012-02-14 03:50:28.000 Logging started. ---------------------- 2012-02-14 03:50:28.000 BioCASe protocol used. ---------------------- 2012-02-14 03:50:28.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2012-02-14 03:50:28.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2012-02-14 03:50:28.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-02-14 03:50:28.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2012-02-14 03:50:28.000 Unknown request type! Default to capabilities. ---------------------- 2012-02-14 03:50:28.000 Destination hostname could not be determined ---------------------- 2012-02-14 03:50:28.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2012-02-14 03:50:28.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-02-14 03:50:28.000 Pickled file is of latest revision. ---------------------- 2012-02-14 03:50:28.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2012-02-14 03:50:28.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2012-02-14 03:50:28.000 Reset CMF convenience cache data hash. ---------------------- 2012-02-14 03:50:28.000 Loading CMF from the source XML file. ---------------------- 2012-02-14 03:50:28.000 CMF Version 2.1 detected. ---------------------- 2012-02-14 03:50:28.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2012-02-14 03:50:28.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2012-02-14 03:50:28.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-02-14 03:50:28.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-02-14 03:50:28.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2012-02-14 12:18:27.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2012-02-14 12:18:26.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA keoekk@oqsgyb.com USA pgxgsv USA 3106 v2r5fD keoekk@oqsgyb.com keoekk@oqsgyb.com pgxgsv
### ERROR LOG The Logging Results: ---------------------- 2012-02-14 11:18:27.000 Logging started. ---------------------- 2012-02-14 11:18:27.000 BioCASe protocol used. ---------------------- 2012-02-14 11:18:27.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2012-02-14 11:18:27.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2012-02-14 11:18:27.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-02-14 11:18:27.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-02-14 11:18:27.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-02-14 12:18:26.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n keoekk@oqsgyb.com\n USA\n pgxgsv\n USA\n 3106\n v2r5fD\n keoekk@oqsgyb.com\n keoekk@oqsgyb.com\n pgxgsv\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-02-14 12:18:26.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n keoekk@oqsgyb.com\n USA\n pgxgsv\n USA\n 3106\n v2r5fD\n keoekk@oqsgyb.com\n keoekk@oqsgyb.com\n pgxgsv\n\n\n\n \n
'} ---------------------- 2012-02-14 11:18:27.000 Found online debuglevel setting: 1 ---------------------- 2012-02-14 11:18:27.000 Setting debuglevel from 0 to 1 ---------------------- 2012-02-14 11:18:27.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-02-14 11:18:27.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-02-14 11:18:27.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2012-02-14 11:18:27.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-02-14 11:18:27.000 Pickled file is of latest revision. ---------------------- 2012-02-14 11:18:27.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-02-14 11:18:27.000 Original filter string parsed:
2.4.2 2012-02-14 12:18:26.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA keoekk@oqsgyb.com USA pgxgsv USA 3106 v2r5fD keoekk@oqsgyb.com keoekk@oqsgyb.com pgxgsv
---------------------- 2012-02-14 11:18:27.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = keoekk@oqsgyb.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE pgxgsv ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 3106 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE v2r5fD ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = keoekk@oqsgyb.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = keoekk@oqsgyb.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE pgxgsv )) ---------------------- 2012-02-14 11:18:27.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = keoekk@oqsgyb.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE pgxgsv ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 3106 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE v2r5fD ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = keoekk@oqsgyb.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = keoekk@oqsgyb.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE pgxgsv )) ---------------------- 2012-02-14 11:18:27.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = keoekk@oqsgyb.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE pgxgsv ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 3106 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE v2r5fD ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = keoekk@oqsgyb.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = keoekk@oqsgyb.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE pgxgsv )) ---------------------- 2012-02-14 11:18:27.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = keoekk@oqsgyb.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE pgxgsv ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 3106 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE v2r5fD ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = keoekk@oqsgyb.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = keoekk@oqsgyb.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE pgxgsv )) ---------------------- 2012-02-14 11:18:27.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2012-02-14 11:18:27.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'keoekk@oqsgyb.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'pgxgsv' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '3106' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'v2r5fD' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'keoekk@oqsgyb.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'keoekk@oqsgyb.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'pgxgsv' ))' ---------------------- 2012-02-14 11:18:27.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "keoekk@oqsgyb.com" ---------------------- 2012-02-14 11:18:27.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2012-02-17 13:56:00.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2012-02-17 12:56:00.000 Logging started. ---------------------- 2012-02-17 12:56:00.000 BioCASe protocol used. ---------------------- 2012-02-17 12:56:00.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2012-02-17 12:56:00.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2012-02-17 12:56:00.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-02-17 12:56:00.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2012-02-17 12:56:00.000 Unknown request type! Default to capabilities. ---------------------- 2012-02-17 12:56:00.000 Destination hostname could not be determined ---------------------- 2012-02-17 12:56:00.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2012-02-17 12:56:00.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2012-02-17 12:56:00.000 Reset CMF convenience cache data hash. ---------------------- 2012-02-17 12:56:00.000 Loading CMF from the source XML file. ---------------------- 2012-02-17 12:56:00.000 CMF Version 2.1 detected. ---------------------- 2012-02-17 12:56:00.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2012-02-17 12:56:00.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2012-02-17 12:56:00.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-02-17 12:56:00.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-02-17 12:56:00.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2012-02-17 12:56:00.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2012-02-17 12:56:00.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-02-17 12:56:00.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2012-02-19 00:20:43.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2012-02-18 23:20:43.000 Logging started. ---------------------- 2012-02-18 23:20:43.000 BioCASe protocol used. ---------------------- 2012-02-18 23:20:43.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2012-02-18 23:20:43.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2012-02-18 23:20:43.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-02-18 23:20:43.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2012-02-18 23:20:43.000 Unknown request type! Default to capabilities. ---------------------- 2012-02-18 23:20:43.000 Destination hostname could not be determined ---------------------- 2012-02-18 23:20:43.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2012-02-18 23:20:43.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2012-02-18 23:20:43.000 Reset CMF convenience cache data hash. ---------------------- 2012-02-18 23:20:43.000 Loading CMF from the source XML file. ---------------------- 2012-02-18 23:20:43.000 CMF Version 2.1 detected. ---------------------- 2012-02-18 23:20:43.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2012-02-18 23:20:43.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2012-02-18 23:20:43.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-02-18 23:20:43.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-02-18 23:20:43.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2012-02-18 23:20:43.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2012-02-18 23:20:43.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-02-18 23:20:43.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2012-02-22 23:48:16.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2012-02-22 22:48:16.000 Logging started. ---------------------- 2012-02-22 22:48:16.000 BioCASe protocol used. ---------------------- 2012-02-22 22:48:16.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2012-02-22 22:48:16.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2012-02-22 22:48:16.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-02-22 22:48:16.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2012-02-22 22:48:16.000 Unknown request type! Default to capabilities. ---------------------- 2012-02-22 22:48:16.000 Destination hostname could not be determined ---------------------- 2012-02-22 22:48:16.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2012-02-22 22:48:16.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2012-02-22 22:48:16.000 Reset CMF convenience cache data hash. ---------------------- 2012-02-22 22:48:16.000 Loading CMF from the source XML file. ---------------------- 2012-02-22 22:48:16.000 CMF Version 2.1 detected. ---------------------- 2012-02-22 22:48:16.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2012-02-22 22:48:16.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2012-02-22 22:48:16.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-02-22 22:48:16.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-02-22 22:48:16.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2012-02-22 22:48:16.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2012-02-22 22:48:16.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-02-22 22:48:16.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2012-02-23 07:15:40.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2012-02-23 06:15:40.000 Logging started. ---------------------- 2012-02-23 06:15:40.000 BioCASe protocol used. ---------------------- 2012-02-23 06:15:40.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2012-02-23 06:15:40.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2012-02-23 06:15:40.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-02-23 06:15:40.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2012-02-23 06:15:40.000 Unknown request type! Default to capabilities. ---------------------- 2012-02-23 06:15:40.000 Destination hostname could not be determined ---------------------- 2012-02-23 06:15:40.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2012-02-23 06:15:40.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-02-23 06:15:40.000 Pickled file is of latest revision. ---------------------- 2012-02-23 06:15:40.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2012-02-23 06:15:40.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2012-02-23 06:15:40.000 Reset CMF convenience cache data hash. ---------------------- 2012-02-23 06:15:40.000 Loading CMF from the source XML file. ---------------------- 2012-02-23 06:15:40.000 CMF Version 2.1 detected. ---------------------- 2012-02-23 06:15:40.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2012-02-23 06:15:40.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2012-02-23 06:15:40.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-02-23 06:15:40.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-02-23 06:15:40.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2012-02-24 07:33:10.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2012-02-24 06:33:10.000 Logging started. ---------------------- 2012-02-24 06:33:10.000 BioCASe protocol used. ---------------------- 2012-02-24 06:33:10.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2012-02-24 06:33:10.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2012-02-24 06:33:10.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-02-24 06:33:10.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2012-02-24 06:33:10.000 Unknown request type! Default to capabilities. ---------------------- 2012-02-24 06:33:10.000 Destination hostname could not be determined ---------------------- 2012-02-24 06:33:10.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2012-02-24 06:33:10.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2012-02-24 06:33:10.000 Reset CMF convenience cache data hash. ---------------------- 2012-02-24 06:33:10.000 Loading CMF from the source XML file. ---------------------- 2012-02-24 06:33:10.000 CMF Version 2.1 detected. ---------------------- 2012-02-24 06:33:10.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2012-02-24 06:33:10.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2012-02-24 06:33:10.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-02-24 06:33:10.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-02-24 06:33:10.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2012-02-24 06:33:10.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2012-02-24 06:33:10.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-02-24 06:33:10.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2012-02-24 15:20:27.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2012-02-24 15:20:27.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA seoirv@jlhnvm.com USA xfnkjfe USA 5429 kI1eI seoirv@jlhnvm.com seoirv@jlhnvm.com xfnkjfe
### ERROR LOG The Logging Results: ---------------------- 2012-02-24 14:20:27.000 Logging started. ---------------------- 2012-02-24 14:20:27.000 BioCASe protocol used. ---------------------- 2012-02-24 14:20:27.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2012-02-24 14:20:27.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2012-02-24 14:20:27.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-02-24 14:20:27.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-02-24 14:20:27.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-02-24 15:20:27.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n seoirv@jlhnvm.com\n USA\n xfnkjfe\n USA\n 5429\n kI1eI\n seoirv@jlhnvm.com\n seoirv@jlhnvm.com\n xfnkjfe\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-02-24 15:20:27.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n seoirv@jlhnvm.com\n USA\n xfnkjfe\n USA\n 5429\n kI1eI\n seoirv@jlhnvm.com\n seoirv@jlhnvm.com\n xfnkjfe\n\n\n\n \n
'} ---------------------- 2012-02-24 14:20:27.000 Found online debuglevel setting: 1 ---------------------- 2012-02-24 14:20:27.000 Setting debuglevel from 0 to 1 ---------------------- 2012-02-24 14:20:27.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-02-24 14:20:27.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-02-24 14:20:27.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2012-02-24 14:20:27.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-02-24 14:20:27.000 Pickled file is of latest revision. ---------------------- 2012-02-24 14:20:27.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-02-24 14:20:27.000 Original filter string parsed:
2.4.2 2012-02-24 15:20:27.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA seoirv@jlhnvm.com USA xfnkjfe USA 5429 kI1eI seoirv@jlhnvm.com seoirv@jlhnvm.com xfnkjfe
---------------------- 2012-02-24 14:20:27.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = seoirv@jlhnvm.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE xfnkjfe ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 5429 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE kI1eI ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = seoirv@jlhnvm.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = seoirv@jlhnvm.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE xfnkjfe )) ---------------------- 2012-02-24 14:20:27.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = seoirv@jlhnvm.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE xfnkjfe ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 5429 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE kI1eI ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = seoirv@jlhnvm.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = seoirv@jlhnvm.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE xfnkjfe )) ---------------------- 2012-02-24 14:20:27.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = seoirv@jlhnvm.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE xfnkjfe ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 5429 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE kI1eI ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = seoirv@jlhnvm.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = seoirv@jlhnvm.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE xfnkjfe )) ---------------------- 2012-02-24 14:20:27.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = seoirv@jlhnvm.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE xfnkjfe ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 5429 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE kI1eI ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = seoirv@jlhnvm.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = seoirv@jlhnvm.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE xfnkjfe )) ---------------------- 2012-02-24 14:20:27.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2012-02-24 14:20:27.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'seoirv@jlhnvm.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'xfnkjfe' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '5429' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'kI1eI' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'seoirv@jlhnvm.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'seoirv@jlhnvm.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'xfnkjfe' ))' ---------------------- 2012-02-24 14:20:27.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "seoirv@jlhnvm.com" ---------------------- 2012-02-24 14:20:27.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2012-02-25 01:55:21.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2012-02-25 00:55:21.000 Logging started. ---------------------- 2012-02-25 00:55:21.000 BioCASe protocol used. ---------------------- 2012-02-25 00:55:21.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2012-02-25 00:55:21.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2012-02-25 00:55:21.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-02-25 00:55:21.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2012-02-25 00:55:21.000 Unknown request type! Default to capabilities. ---------------------- 2012-02-25 00:55:21.000 Destination hostname could not be determined ---------------------- 2012-02-25 00:55:21.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2012-02-25 00:55:21.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-02-25 00:55:21.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-02-25 00:55:21.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2012-02-25 00:55:21.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-02-25 00:55:21.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-02-25 00:55:21.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2012-02-25 01:55:58.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2012-02-25 00:55:58.000 Logging started. ---------------------- 2012-02-25 00:55:58.000 BioCASe protocol used. ---------------------- 2012-02-25 00:55:58.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2012-02-25 00:55:58.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2012-02-25 00:55:58.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-02-25 00:55:58.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2012-02-25 00:55:58.000 Unknown request type! Default to capabilities. ---------------------- 2012-02-25 00:55:58.000 Destination hostname could not be determined ---------------------- 2012-02-25 00:55:58.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2012-02-25 00:55:58.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2012-02-25 00:55:58.000 Reset CMF convenience cache data hash. ---------------------- 2012-02-25 00:55:58.000 Loading CMF from the source XML file. ---------------------- 2012-02-25 00:55:58.000 CMF Version 2.1 detected. ---------------------- 2012-02-25 00:55:58.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2012-02-25 00:55:58.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2012-02-25 00:55:58.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-02-25 00:55:58.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-02-25 00:55:58.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2012-02-25 00:55:58.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2012-02-25 00:55:58.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-02-25 00:55:58.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2012-02-25 01:56:12.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2012-02-25 00:56:12.000 Logging started. ---------------------- 2012-02-25 00:56:12.000 BioCASe protocol used. ---------------------- 2012-02-25 00:56:12.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2012-02-25 00:56:12.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2012-02-25 00:56:12.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-02-25 00:56:12.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2012-02-25 00:56:12.000 Unknown request type! Default to capabilities. ---------------------- 2012-02-25 00:56:12.000 Destination hostname could not be determined ---------------------- 2012-02-25 00:56:12.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2012-02-25 00:56:12.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-02-25 00:56:12.000 Pickled file is of latest revision. ---------------------- 2012-02-25 00:56:12.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2012-02-25 00:56:12.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2012-02-25 00:56:12.000 Reset CMF convenience cache data hash. ---------------------- 2012-02-25 00:56:12.000 Loading CMF from the source XML file. ---------------------- 2012-02-25 00:56:12.000 CMF Version 2.1 detected. ---------------------- 2012-02-25 00:56:12.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2012-02-25 00:56:12.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2012-02-25 00:56:12.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-02-25 00:56:12.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-02-25 00:56:12.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2012-02-25 08:48:41.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2012-02-25 08:48:41.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA erjujw@rgkeky.com USA nhwxguoswxf USA 16198 HEV0x erjujw@rgkeky.com erjujw@rgkeky.com nhwxguoswxf
### ERROR LOG The Logging Results: ---------------------- 2012-02-25 07:48:41.000 Logging started. ---------------------- 2012-02-25 07:48:41.000 BioCASe protocol used. ---------------------- 2012-02-25 07:48:41.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2012-02-25 07:48:41.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2012-02-25 07:48:41.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-02-25 07:48:41.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-02-25 07:48:41.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-02-25 08:48:41.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n erjujw@rgkeky.com\n USA\n nhwxguoswxf\n USA\n 16198\n HEV0x\n erjujw@rgkeky.com\n erjujw@rgkeky.com\n nhwxguoswxf\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-02-25 08:48:41.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n erjujw@rgkeky.com\n USA\n nhwxguoswxf\n USA\n 16198\n HEV0x\n erjujw@rgkeky.com\n erjujw@rgkeky.com\n nhwxguoswxf\n\n\n\n \n
'} ---------------------- 2012-02-25 07:48:41.000 Found online debuglevel setting: 1 ---------------------- 2012-02-25 07:48:41.000 Setting debuglevel from 0 to 1 ---------------------- 2012-02-25 07:48:41.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-02-25 07:48:41.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-02-25 07:48:41.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2012-02-25 07:48:41.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-02-25 07:48:41.000 Pickled file is of latest revision. ---------------------- 2012-02-25 07:48:41.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-02-25 07:48:41.000 Original filter string parsed:
2.4.2 2012-02-25 08:48:41.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA erjujw@rgkeky.com USA nhwxguoswxf USA 16198 HEV0x erjujw@rgkeky.com erjujw@rgkeky.com nhwxguoswxf
---------------------- 2012-02-25 07:48:41.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = erjujw@rgkeky.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE nhwxguoswxf ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 16198 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE HEV0x ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = erjujw@rgkeky.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = erjujw@rgkeky.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE nhwxguoswxf )) ---------------------- 2012-02-25 07:48:41.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = erjujw@rgkeky.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE nhwxguoswxf ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 16198 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE HEV0x ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = erjujw@rgkeky.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = erjujw@rgkeky.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE nhwxguoswxf )) ---------------------- 2012-02-25 07:48:41.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = erjujw@rgkeky.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE nhwxguoswxf ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 16198 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE HEV0x ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = erjujw@rgkeky.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = erjujw@rgkeky.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE nhwxguoswxf )) ---------------------- 2012-02-25 07:48:41.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = erjujw@rgkeky.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE nhwxguoswxf ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 16198 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE HEV0x ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = erjujw@rgkeky.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = erjujw@rgkeky.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE nhwxguoswxf )) ---------------------- 2012-02-25 07:48:41.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2012-02-25 07:48:41.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'erjujw@rgkeky.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'nhwxguoswxf' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '16198' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'HEV0x' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'erjujw@rgkeky.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'erjujw@rgkeky.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'nhwxguoswxf' ))' ---------------------- 2012-02-25 07:48:41.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "erjujw@rgkeky.com" ---------------------- 2012-02-25 07:48:41.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2012-02-27 10:46:28.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2012-02-27 10:46:28.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA ztsoyh@dlqkzx.com USA zhvkyajkgi USA 4872 q1exW ztsoyh@dlqkzx.com ztsoyh@dlqkzx.com zhvkyajkgi
### ERROR LOG The Logging Results: ---------------------- 2012-02-27 09:46:28.000 Logging started. ---------------------- 2012-02-27 09:46:28.000 BioCASe protocol used. ---------------------- 2012-02-27 09:46:28.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2012-02-27 09:46:28.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2012-02-27 09:46:28.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-02-27 09:46:28.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-02-27 09:46:28.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-02-27 10:46:28.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n ztsoyh@dlqkzx.com\n USA\n zhvkyajkgi\n USA\n 4872\n q1exW\n ztsoyh@dlqkzx.com\n ztsoyh@dlqkzx.com\n zhvkyajkgi\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-02-27 10:46:28.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n ztsoyh@dlqkzx.com\n USA\n zhvkyajkgi\n USA\n 4872\n q1exW\n ztsoyh@dlqkzx.com\n ztsoyh@dlqkzx.com\n zhvkyajkgi\n\n\n\n \n
'} ---------------------- 2012-02-27 09:46:28.000 Found online debuglevel setting: 1 ---------------------- 2012-02-27 09:46:28.000 Setting debuglevel from 0 to 1 ---------------------- 2012-02-27 09:46:28.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-02-27 09:46:28.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-02-27 09:46:28.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2012-02-27 09:46:28.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-02-27 09:46:28.000 Pickled file is of latest revision. ---------------------- 2012-02-27 09:46:28.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-02-27 09:46:28.000 Original filter string parsed:
2.4.2 2012-02-27 10:46:28.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA ztsoyh@dlqkzx.com USA zhvkyajkgi USA 4872 q1exW ztsoyh@dlqkzx.com ztsoyh@dlqkzx.com zhvkyajkgi
---------------------- 2012-02-27 09:46:28.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ztsoyh@dlqkzx.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE zhvkyajkgi ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 4872 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE q1exW ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ztsoyh@dlqkzx.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ztsoyh@dlqkzx.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE zhvkyajkgi )) ---------------------- 2012-02-27 09:46:28.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ztsoyh@dlqkzx.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE zhvkyajkgi ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 4872 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE q1exW ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ztsoyh@dlqkzx.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ztsoyh@dlqkzx.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE zhvkyajkgi )) ---------------------- 2012-02-27 09:46:28.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ztsoyh@dlqkzx.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE zhvkyajkgi ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 4872 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE q1exW ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ztsoyh@dlqkzx.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ztsoyh@dlqkzx.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE zhvkyajkgi )) ---------------------- 2012-02-27 09:46:28.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ztsoyh@dlqkzx.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE zhvkyajkgi ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 4872 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE q1exW ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ztsoyh@dlqkzx.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ztsoyh@dlqkzx.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE zhvkyajkgi )) ---------------------- 2012-02-27 09:46:28.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2012-02-27 09:46:28.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'ztsoyh@dlqkzx.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'zhvkyajkgi' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '4872' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'q1exW' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'ztsoyh@dlqkzx.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'ztsoyh@dlqkzx.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'zhvkyajkgi' ))' ---------------------- 2012-02-27 09:46:28.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "ztsoyh@dlqkzx.com" ---------------------- 2012-02-27 09:46:28.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2012-03-03 21:29:00.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2012-03-03 20:29:00.000 Logging started. ---------------------- 2012-03-03 20:29:00.000 BioCASe protocol used. ---------------------- 2012-03-03 20:29:00.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2012-03-03 20:29:00.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2012-03-03 20:29:00.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-03-03 20:29:00.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2012-03-03 20:29:00.000 Unknown request type! Default to capabilities. ---------------------- 2012-03-03 20:29:00.000 Destination hostname could not be determined ---------------------- 2012-03-03 20:29:00.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2012-03-03 20:29:00.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-03-03 20:29:00.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-03-03 20:29:00.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2012-03-03 20:29:00.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-03-03 20:29:00.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-03-03 20:29:00.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2012-03-06 22:06:42.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2012-03-06 21:06:42.000 Logging started. ---------------------- 2012-03-06 21:06:42.000 BioCASe protocol used. ---------------------- 2012-03-06 21:06:42.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2012-03-06 21:06:42.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2012-03-06 21:06:42.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-03-06 21:06:42.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2012-03-06 21:06:42.000 Unknown request type! Default to capabilities. ---------------------- 2012-03-06 21:06:42.000 Destination hostname could not be determined ---------------------- 2012-03-06 21:06:42.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2012-03-06 21:06:42.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-03-06 21:06:42.000 Pickled file is of latest revision. ---------------------- 2012-03-06 21:06:42.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2012-03-06 21:06:42.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2012-03-06 21:06:42.000 Reset CMF convenience cache data hash. ---------------------- 2012-03-06 21:06:42.000 Loading CMF from the source XML file. ---------------------- 2012-03-06 21:06:42.000 CMF Version 2.1 detected. ---------------------- 2012-03-06 21:06:42.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2012-03-06 21:06:42.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2012-03-06 21:06:42.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-03-06 21:06:42.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-03-06 21:06:42.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2012-03-09 13:59:21.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 192.38.28.55 <- $hostAddress to EntomoAlbertinaGBIF
0.98 $DateFormatter.currentDateTimeAsXMLString() $hostAddress http://herpnet.africamuseum.be/biocase/pywrapper.cgi?dsa=EntomoAlbertinaGBIF scan
http://www.tdwg.org/schemas/abcd/2.06 http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Metadata/Description/Representation/Title true
### ERROR LOG The Logging Results: ---------------------- 2012-03-09 12:59:21.000 Logging started. ---------------------- 2012-03-09 12:59:21.000 BioCASe protocol used. ---------------------- 2012-03-09 12:59:21.000 Querystring analyzed by pywrapper.cgi directly: {'request': ['\n\n
\n\t0.98\n\t$DateFormatter.currentDateTimeAsXMLString()\n\t$hostAddress\n\thttp://herpnet.africamuseum.be/biocase/pywrapper.cgi?dsa=EntomoAlbertinaGBIF\n\tscan\n
\n\thttp://www.tdwg.org/schemas/abcd/2.06\n\thttp://www.tdwg.org/schemas/abcd/2.06\n\t/DataSets/DataSet/Metadata/Description/Representation/Title\n\n\t\n\ntrue\n
'], 'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2012-03-09 12:59:21.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2012-03-09 12:59:21.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-03-09 12:59:21.000 HTTP parameter 'request' used for building the request. ---------------------- 2012-03-09 12:59:21.000 All parameters found in the request: {'request_string': '\n\n
\n\t0.98\n\t$DateFormatter.currentDateTimeAsXMLString()\n\t$hostAddress\n\thttp://herpnet.africamuseum.be/biocase/pywrapper.cgi?dsa=EntomoAlbertinaGBIF\n\tscan\n
\n\thttp://www.tdwg.org/schemas/abcd/2.06\n\thttp://www.tdwg.org/schemas/abcd/2.06\n\t/DataSets/DataSet/Metadata/Description/Representation/Title\n\n\t\n\ntrue\n
', 'request': '\n\n
\n\t0.98\n\t$DateFormatter.currentDateTimeAsXMLString()\n\t$hostAddress\n\thttp://herpnet.africamuseum.be/biocase/pywrapper.cgi?dsa=EntomoAlbertinaGBIF\n\tscan\n
\n\thttp://www.tdwg.org/schemas/abcd/2.06\n\thttp://www.tdwg.org/schemas/abcd/2.06\n\t/DataSets/DataSet/Metadata/Description/Representation/Title\n\n\t\n\ntrue\n
', 'dsa': 'EntomoAlbertinaGBIF'} ---------------------- 2012-03-09 12:59:21.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-03-09 12:59:21.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-03-09 12:59:21.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_2.06.xml' ---------------------- 2012-03-09 12:59:21.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-03-09 12:59:21.000 Pickled file is of latest revision. ---------------------- 2012-03-09 12:59:21.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-03-09 12:59:21.000 Original filter string parsed:
0.98 $DateFormatter.currentDateTimeAsXMLString() $hostAddress http://herpnet.africamuseum.be/biocase/pywrapper.cgi?dsa=EntomoAlbertinaGBIF scan
http://www.tdwg.org/schemas/abcd/2.06 http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Metadata/Description/Representation/Title true
---------------------- 2012-03-09 12:59:21.000 Filter created: None ---------------------- 2012-03-09 12:59:21.000 Compressed filter used: None ---------------------- 2012-03-09 12:59:21.000 REQ_NOT_SEARCHABLE_CONCEPT: The requested concept /DataSets/DataSet/Metadata/Description/Representation/Title is not searchable for this provider! Please do a capabilities request to see all searchable concepts ---------------------- 2012-03-09 12:59:21.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 168, in scan raise RequestNotSearchableConceptError(CMFobj.xpath, self.logObj) RequestNotSearchableConceptError: ---------------------- 2012-03-09 12:59:21.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2012-03-13 10:27:55.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 192.38.28.55 to EntomoAlbertinaGBIF
0.98 Mar 13, 2012 10:28:09 AM 192.38.28.55 http://herpnet.africamuseum.be/biocase/pywrapper.cgi?dsa=EntomoAlbertinaGBIF scan
http://www.tdwg.org/schemas/abcd/2.06 http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Metadata/Description/Representation/Title true
### ERROR LOG The Logging Results: ---------------------- 2012-03-13 09:27:55.000 Logging started. ---------------------- 2012-03-13 09:27:55.000 BioCASe protocol used. ---------------------- 2012-03-13 09:27:55.000 Querystring analyzed by pywrapper.cgi directly: {'request': ['\n\n
\n\t0.98\n\tMar 13, 2012 10:28:09 AM\n\t192.38.28.55\n\thttp://herpnet.africamuseum.be/biocase/pywrapper.cgi?dsa=EntomoAlbertinaGBIF\n\tscan\n
\n\thttp://www.tdwg.org/schemas/abcd/2.06\n\thttp://www.tdwg.org/schemas/abcd/2.06\n\t/DataSets/DataSet/Metadata/Description/Representation/Title\n\n\t\n\ntrue\n
'], 'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2012-03-13 09:27:55.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2012-03-13 09:27:55.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-03-13 09:27:55.000 HTTP parameter 'request' used for building the request. ---------------------- 2012-03-13 09:27:55.000 All parameters found in the request: {'request_string': '\n\n
\n\t0.98\n\tMar 13, 2012 10:28:09 AM\n\t192.38.28.55\n\thttp://herpnet.africamuseum.be/biocase/pywrapper.cgi?dsa=EntomoAlbertinaGBIF\n\tscan\n
\n\thttp://www.tdwg.org/schemas/abcd/2.06\n\thttp://www.tdwg.org/schemas/abcd/2.06\n\t/DataSets/DataSet/Metadata/Description/Representation/Title\n\n\t\n\ntrue\n
', 'request': '\n\n
\n\t0.98\n\tMar 13, 2012 10:28:09 AM\n\t192.38.28.55\n\thttp://herpnet.africamuseum.be/biocase/pywrapper.cgi?dsa=EntomoAlbertinaGBIF\n\tscan\n
\n\thttp://www.tdwg.org/schemas/abcd/2.06\n\thttp://www.tdwg.org/schemas/abcd/2.06\n\t/DataSets/DataSet/Metadata/Description/Representation/Title\n\n\t\n\ntrue\n
', 'dsa': 'EntomoAlbertinaGBIF'} ---------------------- 2012-03-13 09:27:55.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-03-13 09:27:55.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-03-13 09:27:55.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_2.06.xml' ---------------------- 2012-03-13 09:27:55.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-03-13 09:27:55.000 Pickled file is of latest revision. ---------------------- 2012-03-13 09:27:55.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-03-13 09:27:55.000 Original filter string parsed:
0.98 Mar 13, 2012 10:28:09 AM 192.38.28.55 http://herpnet.africamuseum.be/biocase/pywrapper.cgi?dsa=EntomoAlbertinaGBIF scan
http://www.tdwg.org/schemas/abcd/2.06 http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Metadata/Description/Representation/Title true
---------------------- 2012-03-13 09:27:55.000 Filter created: None ---------------------- 2012-03-13 09:27:55.000 Compressed filter used: None ---------------------- 2012-03-13 09:27:55.000 REQ_NOT_SEARCHABLE_CONCEPT: The requested concept /DataSets/DataSet/Metadata/Description/Representation/Title is not searchable for this provider! Please do a capabilities request to see all searchable concepts ---------------------- 2012-03-13 09:27:55.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 168, in scan raise RequestNotSearchableConceptError(CMFobj.xpath, self.logObj) RequestNotSearchableConceptError: ---------------------- 2012-03-13 09:27:55.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2012-03-13 11:57:13.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 192.38.28.55 to EntomoAlbertinaGBIF
0.98 Mar 13, 2012 11:57:27 AM 192.38.28.55 http://herpnet.africamuseum.be/biocase/pywrapper.cgi?dsa=EntomoAlbertinaGBIF scan
http://www.tdwg.org/schemas/abcd/2.06 http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Metadata/Description/Representation/Title true
### ERROR LOG The Logging Results: ---------------------- 2012-03-13 10:57:13.000 Logging started. ---------------------- 2012-03-13 10:57:13.000 BioCASe protocol used. ---------------------- 2012-03-13 10:57:13.000 Querystring analyzed by pywrapper.cgi directly: {'request': ['\n\n
\n\t0.98\n\tMar 13, 2012 11:57:27 AM\n\t192.38.28.55\n\thttp://herpnet.africamuseum.be/biocase/pywrapper.cgi?dsa=EntomoAlbertinaGBIF\n\tscan\n
\n\thttp://www.tdwg.org/schemas/abcd/2.06\n\thttp://www.tdwg.org/schemas/abcd/2.06\n\t/DataSets/DataSet/Metadata/Description/Representation/Title\n\n\t\n\ntrue\n
'], 'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2012-03-13 10:57:13.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2012-03-13 10:57:13.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-03-13 10:57:13.000 HTTP parameter 'request' used for building the request. ---------------------- 2012-03-13 10:57:13.000 All parameters found in the request: {'request_string': '\n\n
\n\t0.98\n\tMar 13, 2012 11:57:27 AM\n\t192.38.28.55\n\thttp://herpnet.africamuseum.be/biocase/pywrapper.cgi?dsa=EntomoAlbertinaGBIF\n\tscan\n
\n\thttp://www.tdwg.org/schemas/abcd/2.06\n\thttp://www.tdwg.org/schemas/abcd/2.06\n\t/DataSets/DataSet/Metadata/Description/Representation/Title\n\n\t\n\ntrue\n
', 'request': '\n\n
\n\t0.98\n\tMar 13, 2012 11:57:27 AM\n\t192.38.28.55\n\thttp://herpnet.africamuseum.be/biocase/pywrapper.cgi?dsa=EntomoAlbertinaGBIF\n\tscan\n
\n\thttp://www.tdwg.org/schemas/abcd/2.06\n\thttp://www.tdwg.org/schemas/abcd/2.06\n\t/DataSets/DataSet/Metadata/Description/Representation/Title\n\n\t\n\ntrue\n
', 'dsa': 'EntomoAlbertinaGBIF'} ---------------------- 2012-03-13 10:57:13.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-03-13 10:57:13.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-03-13 10:57:13.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_2.06.xml' ---------------------- 2012-03-13 10:57:13.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-03-13 10:57:14.000 Pickled file is of latest revision. ---------------------- 2012-03-13 10:57:14.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-03-13 10:57:14.000 Original filter string parsed:
0.98 Mar 13, 2012 11:57:27 AM 192.38.28.55 http://herpnet.africamuseum.be/biocase/pywrapper.cgi?dsa=EntomoAlbertinaGBIF scan
http://www.tdwg.org/schemas/abcd/2.06 http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Metadata/Description/Representation/Title true
---------------------- 2012-03-13 10:57:14.000 Filter created: None ---------------------- 2012-03-13 10:57:14.000 Compressed filter used: None ---------------------- 2012-03-13 10:57:14.000 REQ_NOT_SEARCHABLE_CONCEPT: The requested concept /DataSets/DataSet/Metadata/Description/Representation/Title is not searchable for this provider! Please do a capabilities request to see all searchable concepts ---------------------- 2012-03-13 10:57:14.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 168, in scan raise RequestNotSearchableConceptError(CMFobj.xpath, self.logObj) RequestNotSearchableConceptError: ---------------------- 2012-03-13 10:57:14.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2012-03-13 12:40:21.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 192.38.28.55 to EntomoAlbertinaGBIF
0.98 Mar 13, 2012 12:40:34 PM 192.38.28.55 http://herpnet.africamuseum.be/biocase/pywrapper.cgi?dsa=EntomoAlbertinaGBIF scan
http://www.tdwg.org/schemas/abcd/2.06 http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Metadata/Description/Representation/Title true
### ERROR LOG The Logging Results: ---------------------- 2012-03-13 11:40:21.000 Logging started. ---------------------- 2012-03-13 11:40:21.000 BioCASe protocol used. ---------------------- 2012-03-13 11:40:21.000 Querystring analyzed by pywrapper.cgi directly: {'request': ['\n\n
\n\t0.98\n\tMar 13, 2012 12:40:34 PM\n\t192.38.28.55\n\thttp://herpnet.africamuseum.be/biocase/pywrapper.cgi?dsa=EntomoAlbertinaGBIF\n\tscan\n
\n\thttp://www.tdwg.org/schemas/abcd/2.06\n\thttp://www.tdwg.org/schemas/abcd/2.06\n\t/DataSets/DataSet/Metadata/Description/Representation/Title\n\n\t\n\ntrue\n
'], 'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2012-03-13 11:40:21.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2012-03-13 11:40:21.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-03-13 11:40:21.000 HTTP parameter 'request' used for building the request. ---------------------- 2012-03-13 11:40:21.000 All parameters found in the request: {'request_string': '\n\n
\n\t0.98\n\tMar 13, 2012 12:40:34 PM\n\t192.38.28.55\n\thttp://herpnet.africamuseum.be/biocase/pywrapper.cgi?dsa=EntomoAlbertinaGBIF\n\tscan\n
\n\thttp://www.tdwg.org/schemas/abcd/2.06\n\thttp://www.tdwg.org/schemas/abcd/2.06\n\t/DataSets/DataSet/Metadata/Description/Representation/Title\n\n\t\n\ntrue\n
', 'request': '\n\n
\n\t0.98\n\tMar 13, 2012 12:40:34 PM\n\t192.38.28.55\n\thttp://herpnet.africamuseum.be/biocase/pywrapper.cgi?dsa=EntomoAlbertinaGBIF\n\tscan\n
\n\thttp://www.tdwg.org/schemas/abcd/2.06\n\thttp://www.tdwg.org/schemas/abcd/2.06\n\t/DataSets/DataSet/Metadata/Description/Representation/Title\n\n\t\n\ntrue\n
', 'dsa': 'EntomoAlbertinaGBIF'} ---------------------- 2012-03-13 11:40:21.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-03-13 11:40:21.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-03-13 11:40:21.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_2.06.xml' ---------------------- 2012-03-13 11:40:21.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-03-13 11:40:21.000 Pickled file is of latest revision. ---------------------- 2012-03-13 11:40:21.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-03-13 11:40:21.000 Original filter string parsed:
0.98 Mar 13, 2012 12:40:34 PM 192.38.28.55 http://herpnet.africamuseum.be/biocase/pywrapper.cgi?dsa=EntomoAlbertinaGBIF scan
http://www.tdwg.org/schemas/abcd/2.06 http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Metadata/Description/Representation/Title true
---------------------- 2012-03-13 11:40:21.000 Filter created: None ---------------------- 2012-03-13 11:40:21.000 Compressed filter used: None ---------------------- 2012-03-13 11:40:21.000 REQ_NOT_SEARCHABLE_CONCEPT: The requested concept /DataSets/DataSet/Metadata/Description/Representation/Title is not searchable for this provider! Please do a capabilities request to see all searchable concepts ---------------------- 2012-03-13 11:40:21.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 168, in scan raise RequestNotSearchableConceptError(CMFobj.xpath, self.logObj) RequestNotSearchableConceptError: ---------------------- 2012-03-13 11:40:21.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2012-03-13 13:44:52.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 192.38.28.55 to EntomoAlbertinaGBIF
0.98 Mar 13, 2012 1:45:06 PM 192.38.28.55 http://herpnet.africamuseum.be/biocase/pywrapper.cgi?dsa=EntomoAlbertinaGBIF scan
http://www.tdwg.org/schemas/abcd/2.06 http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Metadata/Description/Representation/Title true
### ERROR LOG The Logging Results: ---------------------- 2012-03-13 12:44:52.000 Logging started. ---------------------- 2012-03-13 12:44:52.000 BioCASe protocol used. ---------------------- 2012-03-13 12:44:52.000 Querystring analyzed by pywrapper.cgi directly: {'request': ['\n\n
\n\t0.98\n\tMar 13, 2012 1:45:06 PM\n\t192.38.28.55\n\thttp://herpnet.africamuseum.be/biocase/pywrapper.cgi?dsa=EntomoAlbertinaGBIF\n\tscan\n
\n\thttp://www.tdwg.org/schemas/abcd/2.06\n\thttp://www.tdwg.org/schemas/abcd/2.06\n\t/DataSets/DataSet/Metadata/Description/Representation/Title\n\n\t\n\ntrue\n
'], 'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2012-03-13 12:44:52.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2012-03-13 12:44:52.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-03-13 12:44:52.000 HTTP parameter 'request' used for building the request. ---------------------- 2012-03-13 12:44:52.000 All parameters found in the request: {'request_string': '\n\n
\n\t0.98\n\tMar 13, 2012 1:45:06 PM\n\t192.38.28.55\n\thttp://herpnet.africamuseum.be/biocase/pywrapper.cgi?dsa=EntomoAlbertinaGBIF\n\tscan\n
\n\thttp://www.tdwg.org/schemas/abcd/2.06\n\thttp://www.tdwg.org/schemas/abcd/2.06\n\t/DataSets/DataSet/Metadata/Description/Representation/Title\n\n\t\n\ntrue\n
', 'request': '\n\n
\n\t0.98\n\tMar 13, 2012 1:45:06 PM\n\t192.38.28.55\n\thttp://herpnet.africamuseum.be/biocase/pywrapper.cgi?dsa=EntomoAlbertinaGBIF\n\tscan\n
\n\thttp://www.tdwg.org/schemas/abcd/2.06\n\thttp://www.tdwg.org/schemas/abcd/2.06\n\t/DataSets/DataSet/Metadata/Description/Representation/Title\n\n\t\n\ntrue\n
', 'dsa': 'EntomoAlbertinaGBIF'} ---------------------- 2012-03-13 12:44:52.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-03-13 12:44:52.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-03-13 12:44:52.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_2.06.xml' ---------------------- 2012-03-13 12:44:52.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-03-13 12:44:52.000 Pickled file is of latest revision. ---------------------- 2012-03-13 12:44:52.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-03-13 12:44:52.000 Original filter string parsed:
0.98 Mar 13, 2012 1:45:06 PM 192.38.28.55 http://herpnet.africamuseum.be/biocase/pywrapper.cgi?dsa=EntomoAlbertinaGBIF scan
http://www.tdwg.org/schemas/abcd/2.06 http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Metadata/Description/Representation/Title true
---------------------- 2012-03-13 12:44:52.000 Filter created: None ---------------------- 2012-03-13 12:44:52.000 Compressed filter used: None ---------------------- 2012-03-13 12:44:52.000 REQ_NOT_SEARCHABLE_CONCEPT: The requested concept /DataSets/DataSet/Metadata/Description/Representation/Title is not searchable for this provider! Please do a capabilities request to see all searchable concepts ---------------------- 2012-03-13 12:44:52.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 168, in scan raise RequestNotSearchableConceptError(CMFobj.xpath, self.logObj) RequestNotSearchableConceptError: ---------------------- 2012-03-13 12:44:52.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2012-03-14 11:35:29.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 192.38.28.55 to EntomoAlbertinaGBIF
0.98 Mar 14, 2012 11:35:43 AM 192.38.28.55 http://herpnet.africamuseum.be/biocase/pywrapper.cgi?dsa=EntomoAlbertinaGBIF scan
http://www.tdwg.org/schemas/abcd/2.06 http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Metadata/Description/Representation/Title true
### ERROR LOG The Logging Results: ---------------------- 2012-03-14 10:35:29.000 Logging started. ---------------------- 2012-03-14 10:35:29.000 BioCASe protocol used. ---------------------- 2012-03-14 10:35:29.000 Querystring analyzed by pywrapper.cgi directly: {'request': ['\n\n
\n\t0.98\n\tMar 14, 2012 11:35:43 AM\n\t192.38.28.55\n\thttp://herpnet.africamuseum.be/biocase/pywrapper.cgi?dsa=EntomoAlbertinaGBIF\n\tscan\n
\n\thttp://www.tdwg.org/schemas/abcd/2.06\n\thttp://www.tdwg.org/schemas/abcd/2.06\n\t/DataSets/DataSet/Metadata/Description/Representation/Title\n\n\t\n\ntrue\n
'], 'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2012-03-14 10:35:29.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2012-03-14 10:35:29.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-03-14 10:35:29.000 HTTP parameter 'request' used for building the request. ---------------------- 2012-03-14 10:35:29.000 All parameters found in the request: {'request_string': '\n\n
\n\t0.98\n\tMar 14, 2012 11:35:43 AM\n\t192.38.28.55\n\thttp://herpnet.africamuseum.be/biocase/pywrapper.cgi?dsa=EntomoAlbertinaGBIF\n\tscan\n
\n\thttp://www.tdwg.org/schemas/abcd/2.06\n\thttp://www.tdwg.org/schemas/abcd/2.06\n\t/DataSets/DataSet/Metadata/Description/Representation/Title\n\n\t\n\ntrue\n
', 'request': '\n\n
\n\t0.98\n\tMar 14, 2012 11:35:43 AM\n\t192.38.28.55\n\thttp://herpnet.africamuseum.be/biocase/pywrapper.cgi?dsa=EntomoAlbertinaGBIF\n\tscan\n
\n\thttp://www.tdwg.org/schemas/abcd/2.06\n\thttp://www.tdwg.org/schemas/abcd/2.06\n\t/DataSets/DataSet/Metadata/Description/Representation/Title\n\n\t\n\ntrue\n
', 'dsa': 'EntomoAlbertinaGBIF'} ---------------------- 2012-03-14 10:35:29.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-03-14 10:35:29.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-03-14 10:35:29.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_2.06.xml' ---------------------- 2012-03-14 10:35:29.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-03-14 10:35:29.000 Pickled file is of latest revision. ---------------------- 2012-03-14 10:35:29.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-03-14 10:35:29.000 Original filter string parsed:
0.98 Mar 14, 2012 11:35:43 AM 192.38.28.55 http://herpnet.africamuseum.be/biocase/pywrapper.cgi?dsa=EntomoAlbertinaGBIF scan
http://www.tdwg.org/schemas/abcd/2.06 http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Metadata/Description/Representation/Title true
---------------------- 2012-03-14 10:35:29.000 Filter created: None ---------------------- 2012-03-14 10:35:29.000 Compressed filter used: None ---------------------- 2012-03-14 10:35:29.000 REQ_NOT_SEARCHABLE_CONCEPT: The requested concept /DataSets/DataSet/Metadata/Description/Representation/Title is not searchable for this provider! Please do a capabilities request to see all searchable concepts ---------------------- 2012-03-14 10:35:29.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 168, in scan raise RequestNotSearchableConceptError(CMFobj.xpath, self.logObj) RequestNotSearchableConceptError: ---------------------- 2012-03-14 10:35:29.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2012-03-14 21:01:46.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2012-03-14 21:01:46.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA wljqfq@xmohbk.com USA smqmqvzax USA 63928 b6UM05 wljqfq@xmohbk.com wljqfq@xmohbk.com smqmqvzax
### ERROR LOG The Logging Results: ---------------------- 2012-03-14 20:01:46.000 Logging started. ---------------------- 2012-03-14 20:01:46.000 BioCASe protocol used. ---------------------- 2012-03-14 20:01:46.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2012-03-14 20:01:46.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2012-03-14 20:01:46.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-03-14 20:01:46.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-03-14 20:01:46.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-03-14 21:01:46.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n wljqfq@xmohbk.com\n USA\n smqmqvzax\n USA\n 63928\n b6UM05\n wljqfq@xmohbk.com\n wljqfq@xmohbk.com\n smqmqvzax\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-03-14 21:01:46.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n wljqfq@xmohbk.com\n USA\n smqmqvzax\n USA\n 63928\n b6UM05\n wljqfq@xmohbk.com\n wljqfq@xmohbk.com\n smqmqvzax\n\n\n\n \n
'} ---------------------- 2012-03-14 20:01:46.000 Found online debuglevel setting: 1 ---------------------- 2012-03-14 20:01:46.000 Setting debuglevel from 0 to 1 ---------------------- 2012-03-14 20:01:46.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-03-14 20:01:46.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-03-14 20:01:46.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2012-03-14 20:01:46.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-03-14 20:01:46.000 Pickled file is of latest revision. ---------------------- 2012-03-14 20:01:46.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-03-14 20:01:46.000 Original filter string parsed:
2.4.2 2012-03-14 21:01:46.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA wljqfq@xmohbk.com USA smqmqvzax USA 63928 b6UM05 wljqfq@xmohbk.com wljqfq@xmohbk.com smqmqvzax
---------------------- 2012-03-14 20:01:46.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = wljqfq@xmohbk.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE smqmqvzax ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 63928 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE b6UM05 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = wljqfq@xmohbk.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = wljqfq@xmohbk.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE smqmqvzax )) ---------------------- 2012-03-14 20:01:46.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = wljqfq@xmohbk.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE smqmqvzax ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 63928 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE b6UM05 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = wljqfq@xmohbk.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = wljqfq@xmohbk.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE smqmqvzax )) ---------------------- 2012-03-14 20:01:46.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = wljqfq@xmohbk.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE smqmqvzax ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 63928 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE b6UM05 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = wljqfq@xmohbk.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = wljqfq@xmohbk.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE smqmqvzax )) ---------------------- 2012-03-14 20:01:46.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = wljqfq@xmohbk.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE smqmqvzax ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 63928 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE b6UM05 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = wljqfq@xmohbk.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = wljqfq@xmohbk.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE smqmqvzax )) ---------------------- 2012-03-14 20:01:46.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2012-03-14 20:01:46.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'wljqfq@xmohbk.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'smqmqvzax' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '63928' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'b6UM05' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'wljqfq@xmohbk.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'wljqfq@xmohbk.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'smqmqvzax' ))' ---------------------- 2012-03-14 20:01:46.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "wljqfq@xmohbk.com" ---------------------- 2012-03-14 20:01:46.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2012-03-15 23:40:20.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2012-03-15 23:40:20.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA mxgqkn@jvagpb.com USA agnytn USA 7754 iYfa9 mxgqkn@jvagpb.com mxgqkn@jvagpb.com agnytn
### ERROR LOG The Logging Results: ---------------------- 2012-03-15 22:40:20.000 Logging started. ---------------------- 2012-03-15 22:40:20.000 BioCASe protocol used. ---------------------- 2012-03-15 22:40:20.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2012-03-15 22:40:20.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2012-03-15 22:40:20.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-03-15 22:40:20.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-03-15 22:40:20.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-03-15 23:40:20.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n mxgqkn@jvagpb.com\n USA\n agnytn\n USA\n 7754\n iYfa9\n mxgqkn@jvagpb.com\n mxgqkn@jvagpb.com\n agnytn\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-03-15 23:40:20.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n mxgqkn@jvagpb.com\n USA\n agnytn\n USA\n 7754\n iYfa9\n mxgqkn@jvagpb.com\n mxgqkn@jvagpb.com\n agnytn\n\n\n\n \n
'} ---------------------- 2012-03-15 22:40:20.000 Found online debuglevel setting: 1 ---------------------- 2012-03-15 22:40:20.000 Setting debuglevel from 0 to 1 ---------------------- 2012-03-15 22:40:20.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-03-15 22:40:20.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-03-15 22:40:20.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2012-03-15 22:40:20.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-03-15 22:40:20.000 Pickled file is of latest revision. ---------------------- 2012-03-15 22:40:20.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-03-15 22:40:20.000 Original filter string parsed:
2.4.2 2012-03-15 23:40:20.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA mxgqkn@jvagpb.com USA agnytn USA 7754 iYfa9 mxgqkn@jvagpb.com mxgqkn@jvagpb.com agnytn
---------------------- 2012-03-15 22:40:20.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = mxgqkn@jvagpb.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE agnytn ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 7754 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE iYfa9 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = mxgqkn@jvagpb.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = mxgqkn@jvagpb.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE agnytn )) ---------------------- 2012-03-15 22:40:20.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = mxgqkn@jvagpb.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE agnytn ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 7754 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE iYfa9 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = mxgqkn@jvagpb.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = mxgqkn@jvagpb.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE agnytn )) ---------------------- 2012-03-15 22:40:20.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = mxgqkn@jvagpb.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE agnytn ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 7754 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE iYfa9 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = mxgqkn@jvagpb.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = mxgqkn@jvagpb.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE agnytn )) ---------------------- 2012-03-15 22:40:20.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = mxgqkn@jvagpb.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE agnytn ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 7754 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE iYfa9 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = mxgqkn@jvagpb.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = mxgqkn@jvagpb.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE agnytn )) ---------------------- 2012-03-15 22:40:20.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2012-03-15 22:40:20.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'mxgqkn@jvagpb.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'agnytn' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '7754' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'iYfa9' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'mxgqkn@jvagpb.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'mxgqkn@jvagpb.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'agnytn' ))' ---------------------- 2012-03-15 22:40:20.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "mxgqkn@jvagpb.com" ---------------------- 2012-03-15 22:40:20.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2012-03-16 13:37:35.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2012-03-16 12:37:35.000 Logging started. ---------------------- 2012-03-16 12:37:35.000 BioCASe protocol used. ---------------------- 2012-03-16 12:37:35.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2012-03-16 12:37:35.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2012-03-16 12:37:35.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-03-16 12:37:35.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2012-03-16 12:37:35.000 Unknown request type! Default to capabilities. ---------------------- 2012-03-16 12:37:35.000 Destination hostname could not be determined ---------------------- 2012-03-16 12:37:35.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2012-03-16 12:37:35.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-03-16 12:37:35.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-03-16 12:37:35.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2012-03-16 12:37:35.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-03-16 12:37:35.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-03-16 12:37:35.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2012-03-16 18:42:11.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2012-03-16 17:42:11.000 Logging started. ---------------------- 2012-03-16 17:42:11.000 BioCASe protocol used. ---------------------- 2012-03-16 17:42:11.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2012-03-16 17:42:11.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2012-03-16 17:42:11.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-03-16 17:42:11.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2012-03-16 17:42:11.000 Unknown request type! Default to capabilities. ---------------------- 2012-03-16 17:42:11.000 Destination hostname could not be determined ---------------------- 2012-03-16 17:42:11.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2012-03-16 17:42:11.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2012-03-16 17:42:11.000 Reset CMF convenience cache data hash. ---------------------- 2012-03-16 17:42:11.000 Loading CMF from the source XML file. ---------------------- 2012-03-16 17:42:11.000 CMF Version 2.1 detected. ---------------------- 2012-03-16 17:42:11.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2012-03-16 17:42:11.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2012-03-16 17:42:11.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-03-16 17:42:11.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-03-16 17:42:11.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2012-03-16 17:42:11.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2012-03-16 17:42:11.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-03-16 17:42:11.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2012-03-19 00:35:32.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2012-03-19 00:35:31.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA scdhca@tuisxe.com USA ivqfqs USA 614129 VGG5fS scdhca@tuisxe.com scdhca@tuisxe.com ivqfqs
### ERROR LOG The Logging Results: ---------------------- 2012-03-18 23:35:32.000 Logging started. ---------------------- 2012-03-18 23:35:32.000 BioCASe protocol used. ---------------------- 2012-03-18 23:35:32.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2012-03-18 23:35:32.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2012-03-18 23:35:32.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-03-18 23:35:32.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-03-18 23:35:32.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-03-19 00:35:31.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n scdhca@tuisxe.com\n USA\n ivqfqs\n USA\n 614129\n VGG5fS\n scdhca@tuisxe.com\n scdhca@tuisxe.com\n ivqfqs\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-03-19 00:35:31.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n scdhca@tuisxe.com\n USA\n ivqfqs\n USA\n 614129\n VGG5fS\n scdhca@tuisxe.com\n scdhca@tuisxe.com\n ivqfqs\n\n\n\n \n
'} ---------------------- 2012-03-18 23:35:32.000 Found online debuglevel setting: 1 ---------------------- 2012-03-18 23:35:32.000 Setting debuglevel from 0 to 1 ---------------------- 2012-03-18 23:35:32.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-03-18 23:35:32.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-03-18 23:35:32.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2012-03-18 23:35:32.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-03-18 23:35:32.000 Pickled file is of latest revision. ---------------------- 2012-03-18 23:35:32.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-03-18 23:35:32.000 Original filter string parsed:
2.4.2 2012-03-19 00:35:31.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA scdhca@tuisxe.com USA ivqfqs USA 614129 VGG5fS scdhca@tuisxe.com scdhca@tuisxe.com ivqfqs
---------------------- 2012-03-18 23:35:32.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = scdhca@tuisxe.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE ivqfqs ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 614129 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE VGG5fS ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = scdhca@tuisxe.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = scdhca@tuisxe.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE ivqfqs )) ---------------------- 2012-03-18 23:35:32.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = scdhca@tuisxe.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE ivqfqs ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 614129 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE VGG5fS ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = scdhca@tuisxe.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = scdhca@tuisxe.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE ivqfqs )) ---------------------- 2012-03-18 23:35:32.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = scdhca@tuisxe.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE ivqfqs ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 614129 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE VGG5fS ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = scdhca@tuisxe.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = scdhca@tuisxe.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE ivqfqs )) ---------------------- 2012-03-18 23:35:32.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = scdhca@tuisxe.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE ivqfqs ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 614129 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE VGG5fS ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = scdhca@tuisxe.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = scdhca@tuisxe.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE ivqfqs )) ---------------------- 2012-03-18 23:35:32.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2012-03-18 23:35:32.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'scdhca@tuisxe.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'ivqfqs' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '614129' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'VGG5fS' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'scdhca@tuisxe.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'scdhca@tuisxe.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'ivqfqs' ))' ---------------------- 2012-03-18 23:35:32.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "scdhca@tuisxe.com" ---------------------- 2012-03-18 23:35:32.000 Setting debuglevel from 1 to 3 **************************************** PONTAURUS **************************************** ### ERROR TIME 2012-03-19 16:10:54.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to pontaurus
2.4.2 2012-03-19 16:10:54.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString *
### ERROR LOG The Logging Results: ---------------------- 2012-03-19 15:10:54.000 Logging started. ---------------------- 2012-03-19 15:10:54.000 BioCASe protocol used. ---------------------- 2012-03-19 15:10:54.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['pontaurus']} ---------------------- 2012-03-19 15:10:54.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/pontaurus/provider_setup_file.xml ---------------------- 2012-03-19 15:10:54.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-03-19 15:10:54.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-03-19 15:10:54.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-03-19 16:10:54.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n*\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-03-19 16:10:54.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n*\n\n\n \n
'} ---------------------- 2012-03-19 15:10:54.000 Found online debuglevel setting: 1 ---------------------- 2012-03-19 15:10:54.000 Setting debuglevel from 0 to 1 ---------------------- 2012-03-19 15:10:54.000 The biocase.wrapper.dbmod.dbmod_mysql database module has been used. ---------------------- 2012-03-19 15:10:54.000 No DB connection could be established. Please verify DB state and connection parameters in your provider_setup_file.xml Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_mysql.py", line 55, in createDBconnection return MySQLdb.connect( host=self.psfObj.dbIP, db=self.psfObj.datasource, user=self.psfObj.user, passwd=self.psfObj.password ) File "/usr/lib/python2.4/site-packages/MySQLdb/__init__.py", line 66, in Connect return Connection(*args, **kwargs) File "/usr/lib/python2.4/site-packages/MySQLdb/connections.py", line 134, in __init__ super(Connection, self).__init__(*args, **kwargs2) OperationalError: (1045, "Access denied for user 'WebUser'@'localhost' (using password: NO)") ---------------------- 2012-03-19 15:10:54.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 75, in doRequest operationObj = getOperationsObjectForDBMod(self.psfObj, self.logObj, self.responseObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 354, in getOperationsObjectForDBMod operationsObj = operations(psfObj, logObj, removeCMFSubtreePaths, altRootTableAlias) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 68, in __init__ DBModuleClass.__init__(self, psfObj, logObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_mysql.py", line 37, in __init__ DBBasemodule.__init__(self, psfObj, logObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 43, in __init__ self.conn = self.createDBconnection() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_mysql.py", line 57, in createDBconnection raise ConnectionError(log=self.logObj) ConnectionError: ---------------------- 2012-03-19 15:10:54.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2012-03-19 17:08:04.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2012-03-19 17:08:04.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA erckpm@bxkvxr.com USA byezap USA 551950 SEoZO erckpm@bxkvxr.com erckpm@bxkvxr.com byezap
### ERROR LOG The Logging Results: ---------------------- 2012-03-19 16:08:04.000 Logging started. ---------------------- 2012-03-19 16:08:04.000 BioCASe protocol used. ---------------------- 2012-03-19 16:08:04.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2012-03-19 16:08:04.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2012-03-19 16:08:04.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-03-19 16:08:04.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-03-19 16:08:04.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-03-19 17:08:04.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n erckpm@bxkvxr.com\n USA\n byezap\n USA\n 551950\n SEoZO\n erckpm@bxkvxr.com\n erckpm@bxkvxr.com\n byezap\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-03-19 17:08:04.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n erckpm@bxkvxr.com\n USA\n byezap\n USA\n 551950\n SEoZO\n erckpm@bxkvxr.com\n erckpm@bxkvxr.com\n byezap\n\n\n\n \n
'} ---------------------- 2012-03-19 16:08:04.000 Found online debuglevel setting: 1 ---------------------- 2012-03-19 16:08:04.000 Setting debuglevel from 0 to 1 ---------------------- 2012-03-19 16:08:04.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-03-19 16:08:04.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-03-19 16:08:04.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2012-03-19 16:08:04.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-03-19 16:08:04.000 Pickled file is of latest revision. ---------------------- 2012-03-19 16:08:04.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-03-19 16:08:04.000 Original filter string parsed:
2.4.2 2012-03-19 17:08:04.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA erckpm@bxkvxr.com USA byezap USA 551950 SEoZO erckpm@bxkvxr.com erckpm@bxkvxr.com byezap
---------------------- 2012-03-19 16:08:04.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = erckpm@bxkvxr.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE byezap ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 551950 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE SEoZO ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = erckpm@bxkvxr.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = erckpm@bxkvxr.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE byezap )) ---------------------- 2012-03-19 16:08:04.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = erckpm@bxkvxr.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE byezap ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 551950 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE SEoZO ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = erckpm@bxkvxr.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = erckpm@bxkvxr.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE byezap )) ---------------------- 2012-03-19 16:08:04.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = erckpm@bxkvxr.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE byezap ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 551950 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE SEoZO ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = erckpm@bxkvxr.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = erckpm@bxkvxr.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE byezap )) ---------------------- 2012-03-19 16:08:04.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = erckpm@bxkvxr.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE byezap ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 551950 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE SEoZO ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = erckpm@bxkvxr.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = erckpm@bxkvxr.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE byezap )) ---------------------- 2012-03-19 16:08:04.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2012-03-19 16:08:04.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'erckpm@bxkvxr.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'byezap' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '551950' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'SEoZO' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'erckpm@bxkvxr.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'erckpm@bxkvxr.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'byezap' ))' ---------------------- 2012-03-19 16:08:04.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "erckpm@bxkvxr.com" ---------------------- 2012-03-19 16:08:04.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2012-03-19 20:18:10.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2012-03-19 20:18:10.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA ocgsas@vijrdw.com USA zgkznfhlbdt USA 52109 DSsKZE ocgsas@vijrdw.com ocgsas@vijrdw.com zgkznfhlbdt
### ERROR LOG The Logging Results: ---------------------- 2012-03-19 19:18:10.000 Logging started. ---------------------- 2012-03-19 19:18:10.000 BioCASe protocol used. ---------------------- 2012-03-19 19:18:10.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2012-03-19 19:18:10.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2012-03-19 19:18:10.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-03-19 19:18:10.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-03-19 19:18:10.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-03-19 20:18:10.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n ocgsas@vijrdw.com\n USA\n zgkznfhlbdt\n USA\n 52109\n DSsKZE\n ocgsas@vijrdw.com\n ocgsas@vijrdw.com\n zgkznfhlbdt\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-03-19 20:18:10.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n ocgsas@vijrdw.com\n USA\n zgkznfhlbdt\n USA\n 52109\n DSsKZE\n ocgsas@vijrdw.com\n ocgsas@vijrdw.com\n zgkznfhlbdt\n\n\n\n \n
'} ---------------------- 2012-03-19 19:18:10.000 Found online debuglevel setting: 1 ---------------------- 2012-03-19 19:18:10.000 Setting debuglevel from 0 to 1 ---------------------- 2012-03-19 19:18:10.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-03-19 19:18:10.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-03-19 19:18:10.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2012-03-19 19:18:10.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-03-19 19:18:10.000 Pickled file is of latest revision. ---------------------- 2012-03-19 19:18:10.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-03-19 19:18:10.000 Original filter string parsed:
2.4.2 2012-03-19 20:18:10.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA ocgsas@vijrdw.com USA zgkznfhlbdt USA 52109 DSsKZE ocgsas@vijrdw.com ocgsas@vijrdw.com zgkznfhlbdt
---------------------- 2012-03-19 19:18:10.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ocgsas@vijrdw.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE zgkznfhlbdt ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 52109 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE DSsKZE ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ocgsas@vijrdw.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ocgsas@vijrdw.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE zgkznfhlbdt )) ---------------------- 2012-03-19 19:18:10.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ocgsas@vijrdw.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE zgkznfhlbdt ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 52109 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE DSsKZE ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ocgsas@vijrdw.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ocgsas@vijrdw.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE zgkznfhlbdt )) ---------------------- 2012-03-19 19:18:10.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ocgsas@vijrdw.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE zgkznfhlbdt ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 52109 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE DSsKZE ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ocgsas@vijrdw.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ocgsas@vijrdw.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE zgkznfhlbdt )) ---------------------- 2012-03-19 19:18:10.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ocgsas@vijrdw.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE zgkznfhlbdt ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 52109 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE DSsKZE ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = ocgsas@vijrdw.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ocgsas@vijrdw.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE zgkznfhlbdt )) ---------------------- 2012-03-19 19:18:10.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2012-03-19 19:18:10.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'ocgsas@vijrdw.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'zgkznfhlbdt' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '52109' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'DSsKZE' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'ocgsas@vijrdw.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'ocgsas@vijrdw.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'zgkznfhlbdt' ))' ---------------------- 2012-03-19 19:18:10.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "ocgsas@vijrdw.com" ---------------------- 2012-03-19 19:18:10.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2012-03-20 12:48:13.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2012-03-20 11:48:13.000 Logging started. ---------------------- 2012-03-20 11:48:13.000 BioCASe protocol used. ---------------------- 2012-03-20 11:48:13.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2012-03-20 11:48:13.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2012-03-20 11:48:13.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-03-20 11:48:13.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2012-03-20 11:48:13.000 Unknown request type! Default to capabilities. ---------------------- 2012-03-20 11:48:13.000 Destination hostname could not be determined ---------------------- 2012-03-20 11:48:13.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2012-03-20 11:48:13.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2012-03-20 11:48:13.000 Reset CMF convenience cache data hash. ---------------------- 2012-03-20 11:48:13.000 Loading CMF from the source XML file. ---------------------- 2012-03-20 11:48:13.000 CMF Version 2.1 detected. ---------------------- 2012-03-20 11:48:13.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2012-03-20 11:48:13.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2012-03-20 11:48:13.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-03-20 11:48:13.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-03-20 11:48:13.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2012-03-20 11:48:13.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2012-03-20 11:48:13.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-03-20 11:48:13.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2012-03-21 14:10:10.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2012-03-21 13:10:10.000 Logging started. ---------------------- 2012-03-21 13:10:10.000 BioCASe protocol used. ---------------------- 2012-03-21 13:10:10.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2012-03-21 13:10:10.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2012-03-21 13:10:10.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-03-21 13:10:10.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2012-03-21 13:10:10.000 Unknown request type! Default to capabilities. ---------------------- 2012-03-21 13:10:10.000 Destination hostname could not be determined ---------------------- 2012-03-21 13:10:10.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2012-03-21 13:10:10.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2012-03-21 13:10:10.000 Reset CMF convenience cache data hash. ---------------------- 2012-03-21 13:10:10.000 Loading CMF from the source XML file. ---------------------- 2012-03-21 13:10:10.000 CMF Version 2.1 detected. ---------------------- 2012-03-21 13:10:10.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2012-03-21 13:10:10.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2012-03-21 13:10:10.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-03-21 13:10:10.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-03-21 13:10:10.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2012-03-21 13:10:10.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2012-03-21 13:10:10.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-03-21 13:10:10.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2012-03-22 22:41:10.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2012-03-22 21:41:10.000 Logging started. ---------------------- 2012-03-22 21:41:10.000 BioCASe protocol used. ---------------------- 2012-03-22 21:41:10.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2012-03-22 21:41:10.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2012-03-22 21:41:10.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-03-22 21:41:10.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2012-03-22 21:41:10.000 Unknown request type! Default to capabilities. ---------------------- 2012-03-22 21:41:10.000 Destination hostname could not be determined ---------------------- 2012-03-22 21:41:10.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2012-03-22 21:41:10.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-03-22 21:41:10.000 Pickled file is of latest revision. ---------------------- 2012-03-22 21:41:10.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2012-03-22 21:41:10.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2012-03-22 21:41:10.000 Reset CMF convenience cache data hash. ---------------------- 2012-03-22 21:41:10.000 Loading CMF from the source XML file. ---------------------- 2012-03-22 21:41:10.000 CMF Version 2.1 detected. ---------------------- 2012-03-22 21:41:10.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2012-03-22 21:41:10.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2012-03-22 21:41:10.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-03-22 21:41:10.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-03-22 21:41:10.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2012-03-23 00:18:01.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2012-03-22 23:18:01.000 Logging started. ---------------------- 2012-03-22 23:18:01.000 BioCASe protocol used. ---------------------- 2012-03-22 23:18:01.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2012-03-22 23:18:01.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2012-03-22 23:18:01.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-03-22 23:18:01.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2012-03-22 23:18:01.000 Unknown request type! Default to capabilities. ---------------------- 2012-03-22 23:18:01.000 Destination hostname could not be determined ---------------------- 2012-03-22 23:18:01.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2012-03-22 23:18:01.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2012-03-22 23:18:01.000 Reset CMF convenience cache data hash. ---------------------- 2012-03-22 23:18:01.000 Loading CMF from the source XML file. ---------------------- 2012-03-22 23:18:01.000 CMF Version 2.1 detected. ---------------------- 2012-03-22 23:18:01.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2012-03-22 23:18:01.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2012-03-22 23:18:01.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-03-22 23:18:01.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-03-22 23:18:01.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2012-03-22 23:18:01.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2012-03-22 23:18:01.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-03-22 23:18:01.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2012-03-28 05:11:04.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2012-03-28 03:11:04.000 Logging started. ---------------------- 2012-03-28 03:11:04.000 BioCASe protocol used. ---------------------- 2012-03-28 03:11:04.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2012-03-28 03:11:04.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2012-03-28 03:11:04.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-03-28 03:11:04.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2012-03-28 03:11:04.000 Unknown request type! Default to capabilities. ---------------------- 2012-03-28 03:11:04.000 Destination hostname could not be determined ---------------------- 2012-03-28 03:11:04.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2012-03-28 03:11:04.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-03-28 03:11:04.000 Pickled file is of latest revision. ---------------------- 2012-03-28 03:11:04.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2012-03-28 03:11:04.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2012-03-28 03:11:04.000 Reset CMF convenience cache data hash. ---------------------- 2012-03-28 03:11:04.000 Loading CMF from the source XML file. ---------------------- 2012-03-28 03:11:04.000 CMF Version 2.1 detected. ---------------------- 2012-03-28 03:11:04.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2012-03-28 03:11:04.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2012-03-28 03:11:04.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-03-28 03:11:04.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-03-28 03:11:04.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2012-03-28 05:11:07.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2012-03-28 03:11:07.000 Logging started. ---------------------- 2012-03-28 03:11:07.000 BioCASe protocol used. ---------------------- 2012-03-28 03:11:07.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2012-03-28 03:11:07.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2012-03-28 03:11:07.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-03-28 03:11:07.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2012-03-28 03:11:07.000 Unknown request type! Default to capabilities. ---------------------- 2012-03-28 03:11:07.000 Destination hostname could not be determined ---------------------- 2012-03-28 03:11:07.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2012-03-28 03:11:07.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2012-03-28 03:11:07.000 Reset CMF convenience cache data hash. ---------------------- 2012-03-28 03:11:07.000 Loading CMF from the source XML file. ---------------------- 2012-03-28 03:11:07.000 CMF Version 2.1 detected. ---------------------- 2012-03-28 03:11:07.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2012-03-28 03:11:07.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2012-03-28 03:11:07.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-03-28 03:11:07.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-03-28 03:11:07.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2012-03-28 03:11:07.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2012-03-28 03:11:07.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-03-28 03:11:07.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2012-03-28 05:11:13.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2012-03-28 03:11:13.000 Logging started. ---------------------- 2012-03-28 03:11:13.000 BioCASe protocol used. ---------------------- 2012-03-28 03:11:13.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2012-03-28 03:11:13.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2012-03-28 03:11:13.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-03-28 03:11:13.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2012-03-28 03:11:13.000 Unknown request type! Default to capabilities. ---------------------- 2012-03-28 03:11:13.000 Destination hostname could not be determined ---------------------- 2012-03-28 03:11:13.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2012-03-28 03:11:13.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-03-28 03:11:13.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-03-28 03:11:13.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2012-03-28 03:11:13.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-03-28 03:11:13.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-03-28 03:11:13.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2012-03-29 09:43:41.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2012-03-29 07:43:41.000 Logging started. ---------------------- 2012-03-29 07:43:41.000 BioCASe protocol used. ---------------------- 2012-03-29 07:43:41.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2012-03-29 07:43:41.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2012-03-29 07:43:41.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-03-29 07:43:41.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2012-03-29 07:43:41.000 Unknown request type! Default to capabilities. ---------------------- 2012-03-29 07:43:41.000 Destination hostname could not be determined ---------------------- 2012-03-29 07:43:41.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2012-03-29 07:43:41.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-03-29 07:43:41.000 Pickled file is of latest revision. ---------------------- 2012-03-29 07:43:41.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2012-03-29 07:43:41.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2012-03-29 07:43:41.000 Reset CMF convenience cache data hash. ---------------------- 2012-03-29 07:43:41.000 Loading CMF from the source XML file. ---------------------- 2012-03-29 07:43:41.000 CMF Version 2.1 detected. ---------------------- 2012-03-29 07:43:41.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2012-03-29 07:43:41.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2012-03-29 07:43:41.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-03-29 07:43:41.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-03-29 07:43:41.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2012-03-29 09:43:44.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2012-03-29 07:43:44.000 Logging started. ---------------------- 2012-03-29 07:43:44.000 BioCASe protocol used. ---------------------- 2012-03-29 07:43:44.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2012-03-29 07:43:44.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2012-03-29 07:43:44.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-03-29 07:43:44.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2012-03-29 07:43:44.000 Unknown request type! Default to capabilities. ---------------------- 2012-03-29 07:43:44.000 Destination hostname could not be determined ---------------------- 2012-03-29 07:43:44.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2012-03-29 07:43:44.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2012-03-29 07:43:44.000 Reset CMF convenience cache data hash. ---------------------- 2012-03-29 07:43:44.000 Loading CMF from the source XML file. ---------------------- 2012-03-29 07:43:44.000 CMF Version 2.1 detected. ---------------------- 2012-03-29 07:43:44.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2012-03-29 07:43:44.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2012-03-29 07:43:44.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-03-29 07:43:44.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-03-29 07:43:44.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2012-03-29 07:43:44.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2012-03-29 07:43:44.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-03-29 07:43:44.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2012-03-29 09:43:50.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2012-03-29 07:43:50.000 Logging started. ---------------------- 2012-03-29 07:43:50.000 BioCASe protocol used. ---------------------- 2012-03-29 07:43:50.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2012-03-29 07:43:50.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2012-03-29 07:43:50.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-03-29 07:43:50.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2012-03-29 07:43:50.000 Unknown request type! Default to capabilities. ---------------------- 2012-03-29 07:43:50.000 Destination hostname could not be determined ---------------------- 2012-03-29 07:43:50.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2012-03-29 07:43:50.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-03-29 07:43:50.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-03-29 07:43:50.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2012-03-29 07:43:50.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-03-29 07:43:50.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-03-29 07:43:50.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2012-03-30 10:01:38.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2012-03-30 08:01:38.000 Logging started. ---------------------- 2012-03-30 08:01:38.000 BioCASe protocol used. ---------------------- 2012-03-30 08:01:38.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2012-03-30 08:01:38.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2012-03-30 08:01:38.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-03-30 08:01:38.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2012-03-30 08:01:38.000 Unknown request type! Default to capabilities. ---------------------- 2012-03-30 08:01:38.000 Destination hostname could not be determined ---------------------- 2012-03-30 08:01:38.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2012-03-30 08:01:38.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-03-30 08:01:38.000 Pickled file is of latest revision. ---------------------- 2012-03-30 08:01:38.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2012-03-30 08:01:38.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2012-03-30 08:01:38.000 Reset CMF convenience cache data hash. ---------------------- 2012-03-30 08:01:38.000 Loading CMF from the source XML file. ---------------------- 2012-03-30 08:01:38.000 CMF Version 2.1 detected. ---------------------- 2012-03-30 08:01:39.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2012-03-30 08:01:39.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2012-03-30 08:01:39.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-03-30 08:01:39.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-03-30 08:01:39.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2012-03-30 10:01:41.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2012-03-30 08:01:41.000 Logging started. ---------------------- 2012-03-30 08:01:41.000 BioCASe protocol used. ---------------------- 2012-03-30 08:01:41.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2012-03-30 08:01:41.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2012-03-30 08:01:41.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-03-30 08:01:41.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2012-03-30 08:01:41.000 Unknown request type! Default to capabilities. ---------------------- 2012-03-30 08:01:41.000 Destination hostname could not be determined ---------------------- 2012-03-30 08:01:41.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2012-03-30 08:01:41.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2012-03-30 08:01:41.000 Reset CMF convenience cache data hash. ---------------------- 2012-03-30 08:01:41.000 Loading CMF from the source XML file. ---------------------- 2012-03-30 08:01:41.000 CMF Version 2.1 detected. ---------------------- 2012-03-30 08:01:42.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2012-03-30 08:01:42.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2012-03-30 08:01:42.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-03-30 08:01:42.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-03-30 08:01:42.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2012-03-30 08:01:42.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2012-03-30 08:01:42.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-03-30 08:01:42.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2012-03-30 10:01:47.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2012-03-30 08:01:47.000 Logging started. ---------------------- 2012-03-30 08:01:47.000 BioCASe protocol used. ---------------------- 2012-03-30 08:01:47.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2012-03-30 08:01:47.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2012-03-30 08:01:47.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-03-30 08:01:47.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2012-03-30 08:01:47.000 Unknown request type! Default to capabilities. ---------------------- 2012-03-30 08:01:47.000 Destination hostname could not be determined ---------------------- 2012-03-30 08:01:47.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2012-03-30 08:01:47.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-03-30 08:01:47.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-03-30 08:01:47.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2012-03-30 08:01:47.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-03-30 08:01:47.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-03-30 08:01:47.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2012-03-31 13:18:12.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2012-03-31 13:18:12.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA kfunvt@qjakvh.com USA mnmweh USA 86887 KONFY kfunvt@qjakvh.com kfunvt@qjakvh.com mnmweh
### ERROR LOG The Logging Results: ---------------------- 2012-03-31 11:18:12.000 Logging started. ---------------------- 2012-03-31 11:18:12.000 BioCASe protocol used. ---------------------- 2012-03-31 11:18:12.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2012-03-31 11:18:12.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2012-03-31 11:18:12.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-03-31 11:18:12.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-03-31 11:18:12.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-03-31 13:18:12.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n kfunvt@qjakvh.com\n USA\n mnmweh\n USA\n 86887\n KONFY\n kfunvt@qjakvh.com\n kfunvt@qjakvh.com\n mnmweh\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-03-31 13:18:12.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n kfunvt@qjakvh.com\n USA\n mnmweh\n USA\n 86887\n KONFY\n kfunvt@qjakvh.com\n kfunvt@qjakvh.com\n mnmweh\n\n\n\n \n
'} ---------------------- 2012-03-31 11:18:12.000 Found online debuglevel setting: 1 ---------------------- 2012-03-31 11:18:12.000 Setting debuglevel from 0 to 1 ---------------------- 2012-03-31 11:18:12.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-03-31 11:18:13.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-03-31 11:18:13.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2012-03-31 11:18:13.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-03-31 11:18:13.000 Pickled file is of latest revision. ---------------------- 2012-03-31 11:18:13.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-03-31 11:18:13.000 Original filter string parsed:
2.4.2 2012-03-31 13:18:12.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA kfunvt@qjakvh.com USA mnmweh USA 86887 KONFY kfunvt@qjakvh.com kfunvt@qjakvh.com mnmweh
---------------------- 2012-03-31 11:18:13.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = kfunvt@qjakvh.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE mnmweh ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 86887 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE KONFY ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = kfunvt@qjakvh.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = kfunvt@qjakvh.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE mnmweh )) ---------------------- 2012-03-31 11:18:13.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = kfunvt@qjakvh.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE mnmweh ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 86887 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE KONFY ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = kfunvt@qjakvh.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = kfunvt@qjakvh.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE mnmweh )) ---------------------- 2012-03-31 11:18:13.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = kfunvt@qjakvh.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE mnmweh ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 86887 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE KONFY ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = kfunvt@qjakvh.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = kfunvt@qjakvh.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE mnmweh )) ---------------------- 2012-03-31 11:18:13.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = kfunvt@qjakvh.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE mnmweh ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 86887 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE KONFY ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = kfunvt@qjakvh.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = kfunvt@qjakvh.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE mnmweh )) ---------------------- 2012-03-31 11:18:13.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2012-03-31 11:18:13.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'kfunvt@qjakvh.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'mnmweh' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '86887' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'KONFY' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'kfunvt@qjakvh.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'kfunvt@qjakvh.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'mnmweh' ))' ---------------------- 2012-03-31 11:18:13.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "kfunvt@qjakvh.com" ---------------------- 2012-03-31 11:18:13.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2012-03-31 17:57:28.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2012-03-31 15:57:28.000 Logging started. ---------------------- 2012-03-31 15:57:28.000 BioCASe protocol used. ---------------------- 2012-03-31 15:57:28.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2012-03-31 15:57:28.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2012-03-31 15:57:28.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-03-31 15:57:28.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2012-03-31 15:57:28.000 Unknown request type! Default to capabilities. ---------------------- 2012-03-31 15:57:28.000 Destination hostname could not be determined ---------------------- 2012-03-31 15:57:28.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2012-03-31 15:57:28.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-03-31 15:57:28.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-03-31 15:57:28.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2012-03-31 15:57:28.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-03-31 15:57:28.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-03-31 15:57:28.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2012-04-01 18:22:22.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2012-04-01 16:22:22.000 Logging started. ---------------------- 2012-04-01 16:22:22.000 BioCASe protocol used. ---------------------- 2012-04-01 16:22:22.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2012-04-01 16:22:22.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2012-04-01 16:22:22.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-04-01 16:22:22.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2012-04-01 16:22:22.000 Unknown request type! Default to capabilities. ---------------------- 2012-04-01 16:22:22.000 Destination hostname could not be determined ---------------------- 2012-04-01 16:22:22.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2012-04-01 16:22:22.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-04-01 16:22:23.000 Pickled file is of latest revision. ---------------------- 2012-04-01 16:22:23.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2012-04-01 16:22:23.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2012-04-01 16:22:23.000 Reset CMF convenience cache data hash. ---------------------- 2012-04-01 16:22:23.000 Loading CMF from the source XML file. ---------------------- 2012-04-01 16:22:23.000 CMF Version 2.1 detected. ---------------------- 2012-04-01 16:22:23.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2012-04-01 16:22:23.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2012-04-01 16:22:23.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-04-01 16:22:23.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-04-01 16:22:23.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2012-04-01 18:22:25.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2012-04-01 16:22:25.000 Logging started. ---------------------- 2012-04-01 16:22:25.000 BioCASe protocol used. ---------------------- 2012-04-01 16:22:25.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2012-04-01 16:22:25.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2012-04-01 16:22:25.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-04-01 16:22:25.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2012-04-01 16:22:25.000 Unknown request type! Default to capabilities. ---------------------- 2012-04-01 16:22:25.000 Destination hostname could not be determined ---------------------- 2012-04-01 16:22:25.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2012-04-01 16:22:25.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2012-04-01 16:22:25.000 Reset CMF convenience cache data hash. ---------------------- 2012-04-01 16:22:25.000 Loading CMF from the source XML file. ---------------------- 2012-04-01 16:22:25.000 CMF Version 2.1 detected. ---------------------- 2012-04-01 16:22:26.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2012-04-01 16:22:26.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2012-04-01 16:22:26.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-04-01 16:22:26.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-04-01 16:22:26.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2012-04-01 16:22:26.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2012-04-01 16:22:26.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-04-01 16:22:26.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2012-04-01 18:22:31.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2012-04-01 16:22:31.000 Logging started. ---------------------- 2012-04-01 16:22:31.000 BioCASe protocol used. ---------------------- 2012-04-01 16:22:31.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2012-04-01 16:22:31.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2012-04-01 16:22:31.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-04-01 16:22:31.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2012-04-01 16:22:31.000 Unknown request type! Default to capabilities. ---------------------- 2012-04-01 16:22:31.000 Destination hostname could not be determined ---------------------- 2012-04-01 16:22:31.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2012-04-01 16:22:31.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-04-01 16:22:31.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-04-01 16:22:31.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2012-04-01 16:22:31.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-04-01 16:22:31.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-04-01 16:22:31.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2012-04-03 04:26:01.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2012-04-03 02:26:01.000 Logging started. ---------------------- 2012-04-03 02:26:01.000 BioCASe protocol used. ---------------------- 2012-04-03 02:26:01.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2012-04-03 02:26:01.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2012-04-03 02:26:01.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-04-03 02:26:01.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2012-04-03 02:26:01.000 Unknown request type! Default to capabilities. ---------------------- 2012-04-03 02:26:01.000 Destination hostname could not be determined ---------------------- 2012-04-03 02:26:01.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2012-04-03 02:26:01.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-04-03 02:26:01.000 Pickled file is of latest revision. ---------------------- 2012-04-03 02:26:01.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2012-04-03 02:26:01.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2012-04-03 02:26:01.000 Reset CMF convenience cache data hash. ---------------------- 2012-04-03 02:26:01.000 Loading CMF from the source XML file. ---------------------- 2012-04-03 02:26:01.000 CMF Version 2.1 detected. ---------------------- 2012-04-03 02:26:01.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2012-04-03 02:26:01.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2012-04-03 02:26:01.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-04-03 02:26:01.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-04-03 02:26:01.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2012-04-03 19:13:15.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2012-04-03 17:13:15.000 Logging started. ---------------------- 2012-04-03 17:13:15.000 BioCASe protocol used. ---------------------- 2012-04-03 17:13:15.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2012-04-03 17:13:15.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2012-04-03 17:13:15.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-04-03 17:13:15.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2012-04-03 17:13:15.000 Unknown request type! Default to capabilities. ---------------------- 2012-04-03 17:13:15.000 Destination hostname could not be determined ---------------------- 2012-04-03 17:13:15.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2012-04-03 17:13:15.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-04-03 17:13:15.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-04-03 17:13:15.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2012-04-03 17:13:15.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-04-03 17:13:15.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-04-03 17:13:15.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2012-04-04 13:46:18.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2012-04-04 11:46:18.000 Logging started. ---------------------- 2012-04-04 11:46:18.000 BioCASe protocol used. ---------------------- 2012-04-04 11:46:18.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2012-04-04 11:46:18.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2012-04-04 11:46:18.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-04-04 11:46:18.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2012-04-04 11:46:18.000 Unknown request type! Default to capabilities. ---------------------- 2012-04-04 11:46:18.000 Destination hostname could not be determined ---------------------- 2012-04-04 11:46:18.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2012-04-04 11:46:18.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2012-04-04 11:46:18.000 Reset CMF convenience cache data hash. ---------------------- 2012-04-04 11:46:18.000 Loading CMF from the source XML file. ---------------------- 2012-04-04 11:46:18.000 CMF Version 2.1 detected. ---------------------- 2012-04-04 11:46:18.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2012-04-04 11:46:18.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2012-04-04 11:46:18.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-04-04 11:46:18.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-04-04 11:46:18.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2012-04-04 11:46:18.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2012-04-04 11:46:18.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-04-04 11:46:18.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2012-04-04 18:51:46.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2012-04-04 18:51:46.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString jrSvHSMGkUwiXHGlt bIFuslRsPXZTlqm LWxoPcgRMJhXvr uooiehw meNTdzIkD GaxzIKKHBlOHRqjnNL vRQpvNjoxVokikeY WTOPIunMpOuGvB pXTjbbglNbZBhy uooiehw
### ERROR LOG The Logging Results: ---------------------- 2012-04-04 16:51:46.000 Logging started. ---------------------- 2012-04-04 16:51:46.000 BioCASe protocol used. ---------------------- 2012-04-04 16:51:46.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2012-04-04 16:51:46.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2012-04-04 16:51:46.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-04-04 16:51:46.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-04-04 16:51:46.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-04-04 18:51:46.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n jrSvHSMGkUwiXHGlt\n bIFuslRsPXZTlqm\n LWxoPcgRMJhXvr\n uooiehw\n meNTdzIkD\n GaxzIKKHBlOHRqjnNL\n vRQpvNjoxVokikeY\n WTOPIunMpOuGvB\n pXTjbbglNbZBhy\n uooiehw\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-04-04 18:51:46.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n jrSvHSMGkUwiXHGlt\n bIFuslRsPXZTlqm\n LWxoPcgRMJhXvr\n uooiehw\n meNTdzIkD\n GaxzIKKHBlOHRqjnNL\n vRQpvNjoxVokikeY\n WTOPIunMpOuGvB\n pXTjbbglNbZBhy\n uooiehw\n\n\n\n \n
'} ---------------------- 2012-04-04 16:51:46.000 Found online debuglevel setting: 1 ---------------------- 2012-04-04 16:51:46.000 Setting debuglevel from 0 to 1 ---------------------- 2012-04-04 16:51:46.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-04-04 16:51:46.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-04-04 16:51:46.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2012-04-04 16:51:46.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-04-04 16:51:46.000 Pickled file is of latest revision. ---------------------- 2012-04-04 16:51:46.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-04-04 16:51:46.000 Original filter string parsed:
2.4.2 2012-04-04 18:51:46.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString jrSvHSMGkUwiXHGlt bIFuslRsPXZTlqm LWxoPcgRMJhXvr uooiehw meNTdzIkD GaxzIKKHBlOHRqjnNL vRQpvNjoxVokikeY WTOPIunMpOuGvB pXTjbbglNbZBhy uooiehw
---------------------- 2012-04-04 16:51:46.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE jrSvHSMGkUwiXHGlt ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = bIFuslRsPXZTlqm ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE LWxoPcgRMJhXvr ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE uooiehw ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE meNTdzIkD ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE GaxzIKKHBlOHRqjnNL ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE vRQpvNjoxVokikeY ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = WTOPIunMpOuGvB ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = pXTjbbglNbZBhy ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE uooiehw )) ---------------------- 2012-04-04 16:51:46.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE jrSvHSMGkUwiXHGlt ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = bIFuslRsPXZTlqm ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE LWxoPcgRMJhXvr ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE uooiehw ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE meNTdzIkD ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE GaxzIKKHBlOHRqjnNL ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE vRQpvNjoxVokikeY ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = WTOPIunMpOuGvB ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = pXTjbbglNbZBhy ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE uooiehw )) ---------------------- 2012-04-04 16:51:46.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE jrSvHSMGkUwiXHGlt ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = bIFuslRsPXZTlqm ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE LWxoPcgRMJhXvr ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE uooiehw ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE meNTdzIkD ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE GaxzIKKHBlOHRqjnNL ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE vRQpvNjoxVokikeY ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = WTOPIunMpOuGvB ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = pXTjbbglNbZBhy ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE uooiehw )) ---------------------- 2012-04-04 16:51:46.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE jrSvHSMGkUwiXHGlt ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = bIFuslRsPXZTlqm ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE LWxoPcgRMJhXvr ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE uooiehw ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE meNTdzIkD ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE GaxzIKKHBlOHRqjnNL ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE vRQpvNjoxVokikeY ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = WTOPIunMpOuGvB ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = pXTjbbglNbZBhy ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE uooiehw )) ---------------------- 2012-04-04 16:51:46.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2012-04-04 16:51:46.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'jrSvHSMGkUwiXHGlt' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'bIFuslRsPXZTlqm' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'LWxoPcgRMJhXvr' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'uooiehw' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'meNTdzIkD' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'GaxzIKKHBlOHRqjnNL' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'vRQpvNjoxVokikeY' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'WTOPIunMpOuGvB' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'pXTjbbglNbZBhy' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'uooiehw' ))' ---------------------- 2012-04-04 16:51:46.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "bIFuslRsPXZTlqm" ---------------------- 2012-04-04 16:51:46.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2012-04-05 11:06:30.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2012-04-05 09:06:30.000 Logging started. ---------------------- 2012-04-05 09:06:30.000 BioCASe protocol used. ---------------------- 2012-04-05 09:06:30.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2012-04-05 09:06:30.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2012-04-05 09:06:30.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-04-05 09:06:30.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2012-04-05 09:06:30.000 Unknown request type! Default to capabilities. ---------------------- 2012-04-05 09:06:30.000 Destination hostname could not be determined ---------------------- 2012-04-05 09:06:30.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2012-04-05 09:06:30.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-04-05 09:06:30.000 Pickled file is of latest revision. ---------------------- 2012-04-05 09:06:30.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2012-04-05 09:06:30.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2012-04-05 09:06:30.000 Reset CMF convenience cache data hash. ---------------------- 2012-04-05 09:06:30.000 Loading CMF from the source XML file. ---------------------- 2012-04-05 09:06:30.000 CMF Version 2.1 detected. ---------------------- 2012-04-05 09:06:30.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2012-04-05 09:06:30.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2012-04-05 09:06:30.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-04-05 09:06:30.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-04-05 09:06:30.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2012-04-05 11:06:33.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2012-04-05 09:06:33.000 Logging started. ---------------------- 2012-04-05 09:06:33.000 BioCASe protocol used. ---------------------- 2012-04-05 09:06:33.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2012-04-05 09:06:33.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2012-04-05 09:06:33.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-04-05 09:06:33.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2012-04-05 09:06:33.000 Unknown request type! Default to capabilities. ---------------------- 2012-04-05 09:06:33.000 Destination hostname could not be determined ---------------------- 2012-04-05 09:06:33.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2012-04-05 09:06:33.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2012-04-05 09:06:33.000 Reset CMF convenience cache data hash. ---------------------- 2012-04-05 09:06:33.000 Loading CMF from the source XML file. ---------------------- 2012-04-05 09:06:33.000 CMF Version 2.1 detected. ---------------------- 2012-04-05 09:06:33.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2012-04-05 09:06:33.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2012-04-05 09:06:33.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-04-05 09:06:33.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-04-05 09:06:33.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2012-04-05 09:06:33.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2012-04-05 09:06:33.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-04-05 09:06:33.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2012-04-05 11:06:39.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2012-04-05 09:06:39.000 Logging started. ---------------------- 2012-04-05 09:06:39.000 BioCASe protocol used. ---------------------- 2012-04-05 09:06:39.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2012-04-05 09:06:39.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2012-04-05 09:06:39.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-04-05 09:06:39.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2012-04-05 09:06:39.000 Unknown request type! Default to capabilities. ---------------------- 2012-04-05 09:06:39.000 Destination hostname could not be determined ---------------------- 2012-04-05 09:06:39.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2012-04-05 09:06:39.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-04-05 09:06:39.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-04-05 09:06:39.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2012-04-05 09:06:39.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-04-05 09:06:39.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-04-05 09:06:39.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2012-04-05 11:30:25.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2012-04-05 09:30:25.000 Logging started. ---------------------- 2012-04-05 09:30:25.000 BioCASe protocol used. ---------------------- 2012-04-05 09:30:25.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2012-04-05 09:30:25.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2012-04-05 09:30:25.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-04-05 09:30:25.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2012-04-05 09:30:25.000 Unknown request type! Default to capabilities. ---------------------- 2012-04-05 09:30:25.000 Destination hostname could not be determined ---------------------- 2012-04-05 09:30:25.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2012-04-05 09:30:25.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-04-05 09:30:25.000 Pickled file is of latest revision. ---------------------- 2012-04-05 09:30:25.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2012-04-05 09:30:25.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2012-04-05 09:30:25.000 Reset CMF convenience cache data hash. ---------------------- 2012-04-05 09:30:25.000 Loading CMF from the source XML file. ---------------------- 2012-04-05 09:30:25.000 CMF Version 2.1 detected. ---------------------- 2012-04-05 09:30:25.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2012-04-05 09:30:25.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2012-04-05 09:30:25.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-04-05 09:30:25.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-04-05 09:30:25.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2012-04-05 11:30:28.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2012-04-05 09:30:28.000 Logging started. ---------------------- 2012-04-05 09:30:28.000 BioCASe protocol used. ---------------------- 2012-04-05 09:30:28.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2012-04-05 09:30:28.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2012-04-05 09:30:28.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-04-05 09:30:28.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2012-04-05 09:30:28.000 Unknown request type! Default to capabilities. ---------------------- 2012-04-05 09:30:28.000 Destination hostname could not be determined ---------------------- 2012-04-05 09:30:28.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2012-04-05 09:30:28.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2012-04-05 09:30:28.000 Reset CMF convenience cache data hash. ---------------------- 2012-04-05 09:30:28.000 Loading CMF from the source XML file. ---------------------- 2012-04-05 09:30:28.000 CMF Version 2.1 detected. ---------------------- 2012-04-05 09:30:28.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2012-04-05 09:30:28.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2012-04-05 09:30:28.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-04-05 09:30:28.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-04-05 09:30:28.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2012-04-05 09:30:28.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2012-04-05 09:30:28.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-04-05 09:30:28.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2012-04-05 11:30:34.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2012-04-05 09:30:34.000 Logging started. ---------------------- 2012-04-05 09:30:34.000 BioCASe protocol used. ---------------------- 2012-04-05 09:30:34.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2012-04-05 09:30:34.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2012-04-05 09:30:34.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-04-05 09:30:34.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2012-04-05 09:30:34.000 Unknown request type! Default to capabilities. ---------------------- 2012-04-05 09:30:34.000 Destination hostname could not be determined ---------------------- 2012-04-05 09:30:34.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2012-04-05 09:30:34.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-04-05 09:30:34.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-04-05 09:30:34.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2012-04-05 09:30:34.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-04-05 09:30:34.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-04-05 09:30:34.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2012-04-14 01:39:14.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2012-04-13 23:39:14.000 Logging started. ---------------------- 2012-04-13 23:39:14.000 BioCASe protocol used. ---------------------- 2012-04-13 23:39:14.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2012-04-13 23:39:14.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2012-04-13 23:39:14.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-04-13 23:39:14.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2012-04-13 23:39:14.000 Unknown request type! Default to capabilities. ---------------------- 2012-04-13 23:39:14.000 Destination hostname could not be determined ---------------------- 2012-04-13 23:39:14.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2012-04-13 23:39:14.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-04-13 23:39:14.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-04-13 23:39:14.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2012-04-13 23:39:14.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-04-13 23:39:14.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-04-13 23:39:14.000 Setting debuglevel from 0 to 3 **************************************** STERNADEMO **************************************** ### ERROR TIME 2012-04-14 02:28:08.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to SternaDemo
2.4.2 2012-04-14 02:28:08.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString antphbitm USA USA 3613 USA
### ERROR LOG The Logging Results: ---------------------- 2012-04-14 00:28:08.000 Logging started. ---------------------- 2012-04-14 00:28:08.000 BioCASe protocol used. ---------------------- 2012-04-14 00:28:08.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['SternaDemo']} ---------------------- 2012-04-14 00:28:08.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/SternaDemo/provider_setup_file.xml ---------------------- 2012-04-14 00:28:08.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-04-14 00:28:08.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-04-14 00:28:08.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-04-14 02:28:08.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n antphbitm\n USA\n USA\n 3613\n USA\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-04-14 02:28:08.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n antphbitm\n USA\n USA\n 3613\n USA\n\n\n\n \n
'} ---------------------- 2012-04-14 00:28:08.000 Found online debuglevel setting: 1 ---------------------- 2012-04-14 00:28:08.000 Setting debuglevel from 0 to 1 ---------------------- 2012-04-14 00:28:08.000 No DB connection could be established. Please verify DB state and connection parameters in your provider_setup_file.xml Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 52, in getOperationsObjectForDBMod module = __import__(modulename, globals(), locals(), 'DBmodule') ImportError: No module named dbmod_ ---------------------- 2012-04-14 00:28:08.000 PRG_WRONG_DBMS: The Providers DBMS is not yet supported or it's database drivers are missing. ---------------------- 2012-04-14 00:28:08.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 75, in doRequest operationObj = getOperationsObjectForDBMod(self.psfObj, self.logObj, self.responseObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 56, in getOperationsObjectForDBMod raise ConnectionError(dbms=psfObj.dbms, log=logObj) ConnectionError: ---------------------- 2012-04-14 00:28:08.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2012-04-14 02:28:23.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to EntomoAlbertinaGBIFBck
2.4.2 2012-04-14 02:28:23.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString ikmhdowcjg USA USA 8240 USA
### ERROR LOG The Logging Results: ---------------------- 2012-04-14 00:28:23.000 Logging started. ---------------------- 2012-04-14 00:28:23.000 BioCASe protocol used. ---------------------- 2012-04-14 00:28:23.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2012-04-14 00:28:23.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2012-04-14 00:28:23.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-04-14 00:28:23.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-04-14 00:28:23.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-04-14 02:28:23.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n ikmhdowcjg\n USA\n USA\n 8240\n USA\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-04-14 02:28:23.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n ikmhdowcjg\n USA\n USA\n 8240\n USA\n\n\n\n \n
'} ---------------------- 2012-04-14 00:28:23.000 Found online debuglevel setting: 1 ---------------------- 2012-04-14 00:28:23.000 Setting debuglevel from 0 to 1 ---------------------- 2012-04-14 00:28:23.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-04-14 00:28:23.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-04-14 00:28:23.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2012-04-14 00:28:23.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-04-14 00:28:23.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 231, in getCMFobject CMFObject.loadCMFdata(self.psfObj.getCMFfilename(namespace), psfObj=self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-04-14 00:28:23.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 118, in scan self.CMFObject = self.getCMFobject(self.requestObj.reqSchema, altRootTableKey=self.altRootTableAlias) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 237, in getCMFobject raise CMFError(log=self.logObj, cmf=namespace) CMFError: ---------------------- 2012-04-14 00:28:23.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2012-04-14 02:28:24.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians20070608
2.4.2 2012-04-14 02:28:24.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA nztoys@uzllif.com USA xyymemyp USA 56677 USA nztoys@uzllif.com xyymemyp xyymemyp
### ERROR LOG The Logging Results: ---------------------- 2012-04-14 00:28:24.000 Logging started. ---------------------- 2012-04-14 00:28:24.000 BioCASe protocol used. ---------------------- 2012-04-14 00:28:24.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2012-04-14 00:28:24.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2012-04-14 00:28:24.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-04-14 00:28:24.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-04-14 00:28:24.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-04-14 02:28:24.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n nztoys@uzllif.com\n USA\n xyymemyp\n USA\n 56677\n USA\n nztoys@uzllif.com\n xyymemyp\n xyymemyp\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-04-14 02:28:24.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n nztoys@uzllif.com\n USA\n xyymemyp\n USA\n 56677\n USA\n nztoys@uzllif.com\n xyymemyp\n xyymemyp\n\n\n\n \n
'} ---------------------- 2012-04-14 00:28:24.000 Found online debuglevel setting: 1 ---------------------- 2012-04-14 00:28:24.000 Setting debuglevel from 0 to 1 ---------------------- 2012-04-14 00:28:24.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-04-14 00:28:24.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-04-14 00:28:24.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2012-04-14 00:28:24.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2012-04-14 00:28:24.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 231, in getCMFobject CMFObject.loadCMFdata(self.psfObj.getCMFfilename(namespace), psfObj=self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-04-14 00:28:24.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 118, in scan self.CMFObject = self.getCMFobject(self.requestObj.reqSchema, altRootTableKey=self.altRootTableAlias) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 237, in getCMFobject raise CMFError(log=self.logObj, cmf=namespace) CMFError: ---------------------- 2012-04-14 00:28:24.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2012-04-14 02:28:24.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2012-04-14 02:28:24.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA rcxxqn@mtuirr.com USA ayplwvbe USA 8109 USA rcxxqn@mtuirr.com ayplwvbe ayplwvbe
### ERROR LOG The Logging Results: ---------------------- 2012-04-14 00:28:24.000 Logging started. ---------------------- 2012-04-14 00:28:24.000 BioCASe protocol used. ---------------------- 2012-04-14 00:28:24.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2012-04-14 00:28:24.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2012-04-14 00:28:24.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-04-14 00:28:24.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-04-14 00:28:24.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-04-14 02:28:24.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n rcxxqn@mtuirr.com\n USA\n ayplwvbe\n USA\n 8109\n USA\n rcxxqn@mtuirr.com\n ayplwvbe\n ayplwvbe\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-04-14 02:28:24.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n rcxxqn@mtuirr.com\n USA\n ayplwvbe\n USA\n 8109\n USA\n rcxxqn@mtuirr.com\n ayplwvbe\n ayplwvbe\n\n\n\n \n
'} ---------------------- 2012-04-14 00:28:24.000 Found online debuglevel setting: 1 ---------------------- 2012-04-14 00:28:24.000 Setting debuglevel from 0 to 1 ---------------------- 2012-04-14 00:28:24.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-04-14 00:28:24.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-04-14 00:28:24.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2012-04-14 00:28:24.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-04-14 00:28:24.000 Pickled file is of latest revision. ---------------------- 2012-04-14 00:28:24.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-04-14 00:28:24.000 Original filter string parsed:
2.4.2 2012-04-14 02:28:24.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA rcxxqn@mtuirr.com USA ayplwvbe USA 8109 USA rcxxqn@mtuirr.com ayplwvbe ayplwvbe
---------------------- 2012-04-14 00:28:24.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = rcxxqn@mtuirr.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE ayplwvbe ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 8109 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = rcxxqn@mtuirr.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ayplwvbe ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE ayplwvbe )) ---------------------- 2012-04-14 00:28:24.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = rcxxqn@mtuirr.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE ayplwvbe ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 8109 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = rcxxqn@mtuirr.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ayplwvbe ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE ayplwvbe )) ---------------------- 2012-04-14 00:28:24.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = rcxxqn@mtuirr.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE ayplwvbe ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 8109 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = rcxxqn@mtuirr.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ayplwvbe ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE ayplwvbe )) ---------------------- 2012-04-14 00:28:24.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = rcxxqn@mtuirr.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE ayplwvbe ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 8109 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = rcxxqn@mtuirr.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ayplwvbe ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE ayplwvbe )) ---------------------- 2012-04-14 00:28:24.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2012-04-14 00:28:24.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'rcxxqn@mtuirr.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'ayplwvbe' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '8109' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'rcxxqn@mtuirr.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'ayplwvbe' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'ayplwvbe' ))' ---------------------- 2012-04-14 00:28:24.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "rcxxqn@mtuirr.com" ---------------------- 2012-04-14 00:28:24.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2012-04-14 02:28:34.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to EntomoAlbertinaBck
2.4.2 2012-04-14 02:28:34.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString jorbwotd USA USA 7920 USA
### ERROR LOG The Logging Results: ---------------------- 2012-04-14 00:28:34.000 Logging started. ---------------------- 2012-04-14 00:28:34.000 BioCASe protocol used. ---------------------- 2012-04-14 00:28:34.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2012-04-14 00:28:34.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2012-04-14 00:28:34.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-04-14 00:28:34.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-04-14 00:28:34.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-04-14 02:28:34.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n jorbwotd\n USA\n USA\n 7920\n USA\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-04-14 02:28:34.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n jorbwotd\n USA\n USA\n 7920\n USA\n\n\n\n \n
'} ---------------------- 2012-04-14 00:28:34.000 Found online debuglevel setting: 1 ---------------------- 2012-04-14 00:28:34.000 Setting debuglevel from 0 to 1 ---------------------- 2012-04-14 00:28:34.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-04-14 00:28:34.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-04-14 00:28:34.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2012-04-14 00:28:34.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2012-04-14 00:28:34.000 Reset CMF convenience cache data hash. ---------------------- 2012-04-14 00:28:34.000 Loading CMF from the source XML file. ---------------------- 2012-04-14 00:28:34.000 CMF Version 2.1 detected. ---------------------- 2012-04-14 00:28:34.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2012-04-14 00:28:34.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2012-04-14 00:28:34.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-04-14 00:28:34.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 231, in getCMFobject CMFObject.loadCMFdata(self.psfObj.getCMFfilename(namespace), psfObj=self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-04-14 00:28:34.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 118, in scan self.CMFObject = self.getCMFobject(self.requestObj.reqSchema, altRootTableKey=self.altRootTableAlias) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 237, in getCMFobject raise CMFError(log=self.logObj, cmf=namespace) CMFError: ---------------------- 2012-04-14 00:28:34.000 Setting debuglevel from 1 to 3 **************************************** TRAINING **************************************** ### ERROR TIME 2012-04-14 02:28:33.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to training
2.4.2 2012-04-14 02:28:33.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString xlvnyf USA USA 116618 USA
### ERROR LOG The Logging Results: ---------------------- 2012-04-14 00:28:33.000 Logging started. ---------------------- 2012-04-14 00:28:33.000 BioCASe protocol used. ---------------------- 2012-04-14 00:28:33.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['training']} ---------------------- 2012-04-14 00:28:33.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/training/provider_setup_file.xml ---------------------- 2012-04-14 00:28:33.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-04-14 00:28:33.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-04-14 00:28:33.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-04-14 02:28:33.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n xlvnyf\n USA\n USA\n 116618\n USA\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-04-14 02:28:33.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n xlvnyf\n USA\n USA\n 116618\n USA\n\n\n\n \n
'} ---------------------- 2012-04-14 00:28:33.000 Found online debuglevel setting: 1 ---------------------- 2012-04-14 00:28:33.000 Setting debuglevel from 0 to 1 ---------------------- 2012-04-14 00:28:33.000 The biocase.wrapper.dbmod.dbmod_mysql database module has been used. ---------------------- 2012-04-14 00:28:37.000 No DB connection could be established. Please verify DB state and connection parameters in your provider_setup_file.xml Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_mysql.py", line 55, in createDBconnection return MySQLdb.connect( host=self.psfObj.dbIP, db=self.psfObj.datasource, user=self.psfObj.user, passwd=self.psfObj.password ) File "/usr/lib/python2.4/site-packages/MySQLdb/__init__.py", line 66, in Connect return Connection(*args, **kwargs) File "/usr/lib/python2.4/site-packages/MySQLdb/connections.py", line 134, in __init__ super(Connection, self).__init__(*args, **kwargs2) OperationalError: (2003, "Can't connect to MySQL server on '192.168.2.252' (111)") ---------------------- 2012-04-14 00:28:37.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 75, in doRequest operationObj = getOperationsObjectForDBMod(self.psfObj, self.logObj, self.responseObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 354, in getOperationsObjectForDBMod operationsObj = operations(psfObj, logObj, removeCMFSubtreePaths, altRootTableAlias) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 68, in __init__ DBModuleClass.__init__(self, psfObj, logObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_mysql.py", line 37, in __init__ DBBasemodule.__init__(self, psfObj, logObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 43, in __init__ self.conn = self.createDBconnection() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_mysql.py", line 57, in createDBconnection raise ConnectionError(log=self.logObj) ConnectionError: ---------------------- 2012-04-14 00:28:37.000 Setting debuglevel from 1 to 3 **************************************** TESTRMCA **************************************** ### ERROR TIME 2012-04-14 02:28:54.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to testRMCA
2.4.2 2012-04-14 02:28:53.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString rrwral USA USA 166864 USA
### ERROR LOG The Logging Results: ---------------------- 2012-04-14 00:28:54.000 Logging started. ---------------------- 2012-04-14 00:28:54.000 BioCASe protocol used. ---------------------- 2012-04-14 00:28:54.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['testRMCA']} ---------------------- 2012-04-14 00:28:54.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/testRMCA/provider_setup_file.xml ---------------------- 2012-04-14 00:28:54.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-04-14 00:28:54.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-04-14 00:28:54.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-04-14 02:28:53.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n rrwral\n USA\n USA\n 166864\n USA\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-04-14 02:28:53.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n rrwral\n USA\n USA\n 166864\n USA\n\n\n\n \n
'} ---------------------- 2012-04-14 00:28:54.000 Found online debuglevel setting: 1 ---------------------- 2012-04-14 00:28:54.000 Setting debuglevel from 0 to 1 ---------------------- 2012-04-14 00:28:54.000 No DB connection could be established. Please verify DB state and connection parameters in your provider_setup_file.xml Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 52, in getOperationsObjectForDBMod module = __import__(modulename, globals(), locals(), 'DBmodule') ImportError: No module named dbmod_ ---------------------- 2012-04-14 00:28:54.000 PRG_WRONG_DBMS: The Providers DBMS is not yet supported or it's database drivers are missing. ---------------------- 2012-04-14 00:28:54.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 75, in doRequest operationObj = getOperationsObjectForDBMod(self.psfObj, self.logObj, self.responseObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 56, in getOperationsObjectForDBMod raise ConnectionError(dbms=psfObj.dbms, log=logObj) ConnectionError: ---------------------- 2012-04-14 00:28:54.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2012-04-14 02:29:01.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians20070608
2.4.2 2012-04-14 02:29:01.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA hlmdur@yozqqc.com USA khbrjazprql USA 6245 USA hlmdur@yozqqc.com khbrjazprql khbrjazprql
### ERROR LOG The Logging Results: ---------------------- 2012-04-14 00:29:01.000 Logging started. ---------------------- 2012-04-14 00:29:01.000 BioCASe protocol used. ---------------------- 2012-04-14 00:29:01.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2012-04-14 00:29:01.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2012-04-14 00:29:01.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-04-14 00:29:01.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-04-14 00:29:01.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-04-14 02:29:01.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n hlmdur@yozqqc.com\n USA\n khbrjazprql\n USA\n 6245\n USA\n hlmdur@yozqqc.com\n khbrjazprql\n khbrjazprql\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-04-14 02:29:01.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n hlmdur@yozqqc.com\n USA\n khbrjazprql\n USA\n 6245\n USA\n hlmdur@yozqqc.com\n khbrjazprql\n khbrjazprql\n\n\n\n \n
'} ---------------------- 2012-04-14 00:29:01.000 Found online debuglevel setting: 1 ---------------------- 2012-04-14 00:29:01.000 Setting debuglevel from 0 to 1 ---------------------- 2012-04-14 00:29:01.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-04-14 00:29:01.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-04-14 00:29:01.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2012-04-14 00:29:01.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2012-04-14 00:29:01.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 231, in getCMFobject CMFObject.loadCMFdata(self.psfObj.getCMFfilename(namespace), psfObj=self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-04-14 00:29:01.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 118, in scan self.CMFObject = self.getCMFobject(self.requestObj.reqSchema, altRootTableKey=self.altRootTableAlias) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 237, in getCMFobject raise CMFError(log=self.logObj, cmf=namespace) CMFError: ---------------------- 2012-04-14 00:29:01.000 Setting debuglevel from 1 to 3 **************************************** HERPNETRMCA **************************************** ### ERROR TIME 2012-04-14 02:29:05.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to herpNETRMCA
2.4.2 2012-04-14 02:29:05.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString hifppgthb USA USA 713001 USA
### ERROR LOG The Logging Results: ---------------------- 2012-04-14 00:29:05.000 Logging started. ---------------------- 2012-04-14 00:29:05.000 BioCASe protocol used. ---------------------- 2012-04-14 00:29:05.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['herpNETRMCA']} ---------------------- 2012-04-14 00:29:05.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/herpNETRMCA/provider_setup_file.xml ---------------------- 2012-04-14 00:29:05.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-04-14 00:29:05.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-04-14 00:29:05.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-04-14 02:29:05.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n hifppgthb\n USA\n USA\n 713001\n USA\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-04-14 02:29:05.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n hifppgthb\n USA\n USA\n 713001\n USA\n\n\n\n \n
'} ---------------------- 2012-04-14 00:29:05.000 Found online debuglevel setting: 1 ---------------------- 2012-04-14 00:29:05.000 Setting debuglevel from 0 to 1 ---------------------- 2012-04-14 00:29:05.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-04-14 00:29:05.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-04-14 00:29:05.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/herpNETRMCA/cmf_ABCD_2 06 .xml' ---------------------- 2012-04-14 00:29:05.000 Load the pickled CMF object '.cmf_ABCD_2 06 .xml.pick' ---------------------- 2012-04-14 00:29:05.000 Pickled file is of latest revision. ---------------------- 2012-04-14 00:29:05.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-04-14 00:29:05.000 Original filter string parsed:
2.4.2 2012-04-14 02:29:05.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString hifppgthb USA USA 713001 USA
---------------------- 2012-04-14 00:29:05.000 Filter created: (("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE hifppgthb ) AND ("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 713001 ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA )) ---------------------- 2012-04-14 00:29:05.000 Compressed filter used: (("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE hifppgthb ) AND ("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 713001 ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA )) ---------------------- 2012-04-14 00:29:05.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE hifppgthb ) AND ("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 713001 ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA )) ---------------------- 2012-04-14 00:29:05.000 Final fully compressed filter: (("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE hifppgthb ) AND ("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 713001 ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA )) ---------------------- 2012-04-14 00:29:05.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2012-04-14 00:29:05.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "v_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "v_abcd2v06manytomanyidentifications" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "v_abcd2v06higherrankbymanyidentifications" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'hifppgthb' ) AND ("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '713001' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ))' ---------------------- 2012-04-14 00:29:05.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: relation "v_abcd2v06manytomanyidentifications" does not exist ---------------------- 2012-04-14 00:29:05.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2012-04-14 02:29:42.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2012-04-14 02:29:42.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA alqbyq@ndifla.com USA jiivzzd USA 97902 USA alqbyq@ndifla.com jiivzzd jiivzzd
### ERROR LOG The Logging Results: ---------------------- 2012-04-14 00:29:42.000 Logging started. ---------------------- 2012-04-14 00:29:42.000 BioCASe protocol used. ---------------------- 2012-04-14 00:29:42.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2012-04-14 00:29:42.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2012-04-14 00:29:42.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-04-14 00:29:42.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-04-14 00:29:42.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-04-14 02:29:42.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n alqbyq@ndifla.com\n USA\n jiivzzd\n USA\n 97902\n USA\n alqbyq@ndifla.com\n jiivzzd\n jiivzzd\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-04-14 02:29:42.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n alqbyq@ndifla.com\n USA\n jiivzzd\n USA\n 97902\n USA\n alqbyq@ndifla.com\n jiivzzd\n jiivzzd\n\n\n\n \n
'} ---------------------- 2012-04-14 00:29:42.000 Found online debuglevel setting: 1 ---------------------- 2012-04-14 00:29:42.000 Setting debuglevel from 0 to 1 ---------------------- 2012-04-14 00:29:42.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-04-14 00:29:42.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-04-14 00:29:42.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2012-04-14 00:29:42.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-04-14 00:29:42.000 Pickled file is of latest revision. ---------------------- 2012-04-14 00:29:42.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-04-14 00:29:42.000 Original filter string parsed:
2.4.2 2012-04-14 02:29:42.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA alqbyq@ndifla.com USA jiivzzd USA 97902 USA alqbyq@ndifla.com jiivzzd jiivzzd
---------------------- 2012-04-14 00:29:42.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = alqbyq@ndifla.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE jiivzzd ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 97902 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = alqbyq@ndifla.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = jiivzzd ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jiivzzd )) ---------------------- 2012-04-14 00:29:42.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = alqbyq@ndifla.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE jiivzzd ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 97902 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = alqbyq@ndifla.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = jiivzzd ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jiivzzd )) ---------------------- 2012-04-14 00:29:42.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = alqbyq@ndifla.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE jiivzzd ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 97902 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = alqbyq@ndifla.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = jiivzzd ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jiivzzd )) ---------------------- 2012-04-14 00:29:42.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = alqbyq@ndifla.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE jiivzzd ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 97902 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = alqbyq@ndifla.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = jiivzzd ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jiivzzd )) ---------------------- 2012-04-14 00:29:42.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2012-04-14 00:29:42.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'alqbyq@ndifla.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'jiivzzd' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '97902' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'alqbyq@ndifla.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'jiivzzd' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'jiivzzd' ))' ---------------------- 2012-04-14 00:29:42.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "alqbyq@ndifla.com" ---------------------- 2012-04-14 00:29:42.000 Setting debuglevel from 1 to 3 **************************************** PONTAURUS **************************************** ### ERROR TIME 2012-04-14 02:30:32.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to pontaurus
2.4.2 2012-04-14 02:30:32.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString jpynwqjyye USA USA 74947 USA
### ERROR LOG The Logging Results: ---------------------- 2012-04-14 00:30:32.000 Logging started. ---------------------- 2012-04-14 00:30:32.000 BioCASe protocol used. ---------------------- 2012-04-14 00:30:32.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['pontaurus']} ---------------------- 2012-04-14 00:30:32.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/pontaurus/provider_setup_file.xml ---------------------- 2012-04-14 00:30:32.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-04-14 00:30:32.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-04-14 00:30:32.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-04-14 02:30:32.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n jpynwqjyye\n USA\n USA\n 74947\n USA\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-04-14 02:30:32.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n jpynwqjyye\n USA\n USA\n 74947\n USA\n\n\n\n \n
'} ---------------------- 2012-04-14 00:30:32.000 Found online debuglevel setting: 1 ---------------------- 2012-04-14 00:30:32.000 Setting debuglevel from 0 to 1 ---------------------- 2012-04-14 00:30:32.000 The biocase.wrapper.dbmod.dbmod_mysql database module has been used. ---------------------- 2012-04-14 00:30:32.000 No DB connection could be established. Please verify DB state and connection parameters in your provider_setup_file.xml Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_mysql.py", line 55, in createDBconnection return MySQLdb.connect( host=self.psfObj.dbIP, db=self.psfObj.datasource, user=self.psfObj.user, passwd=self.psfObj.password ) File "/usr/lib/python2.4/site-packages/MySQLdb/__init__.py", line 66, in Connect return Connection(*args, **kwargs) File "/usr/lib/python2.4/site-packages/MySQLdb/connections.py", line 134, in __init__ super(Connection, self).__init__(*args, **kwargs2) OperationalError: (1045, "Access denied for user 'WebUser'@'localhost' (using password: NO)") ---------------------- 2012-04-14 00:30:32.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 75, in doRequest operationObj = getOperationsObjectForDBMod(self.psfObj, self.logObj, self.responseObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 354, in getOperationsObjectForDBMod operationsObj = operations(psfObj, logObj, removeCMFSubtreePaths, altRootTableAlias) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 68, in __init__ DBModuleClass.__init__(self, psfObj, logObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_mysql.py", line 37, in __init__ DBBasemodule.__init__(self, psfObj, logObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 43, in __init__ self.conn = self.createDBconnection() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_mysql.py", line 57, in createDBconnection raise ConnectionError(log=self.logObj) ConnectionError: ---------------------- 2012-04-14 00:30:32.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2012-04-16 03:36:15.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2012-04-16 01:36:15.000 Logging started. ---------------------- 2012-04-16 01:36:15.000 BioCASe protocol used. ---------------------- 2012-04-16 01:36:15.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2012-04-16 01:36:15.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2012-04-16 01:36:15.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-04-16 01:36:15.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2012-04-16 01:36:15.000 Unknown request type! Default to capabilities. ---------------------- 2012-04-16 01:36:15.000 Destination hostname could not be determined ---------------------- 2012-04-16 01:36:15.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2012-04-16 01:36:15.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2012-04-16 01:36:15.000 Reset CMF convenience cache data hash. ---------------------- 2012-04-16 01:36:15.000 Loading CMF from the source XML file. ---------------------- 2012-04-16 01:36:15.000 CMF Version 2.1 detected. ---------------------- 2012-04-16 01:36:15.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2012-04-16 01:36:15.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2012-04-16 01:36:15.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-04-16 01:36:15.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-04-16 01:36:15.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2012-04-16 01:36:15.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2012-04-16 01:36:15.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-04-16 01:36:15.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2012-04-22 15:18:00.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2012-04-22 13:18:00.000 Logging started. ---------------------- 2012-04-22 13:18:00.000 BioCASe protocol used. ---------------------- 2012-04-22 13:18:00.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2012-04-22 13:18:00.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2012-04-22 13:18:00.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-04-22 13:18:00.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2012-04-22 13:18:00.000 Unknown request type! Default to capabilities. ---------------------- 2012-04-22 13:18:00.000 Destination hostname could not be determined ---------------------- 2012-04-22 13:18:00.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2012-04-22 13:18:00.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-04-22 13:18:00.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-04-22 13:18:00.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2012-04-22 13:18:00.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-04-22 13:18:00.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-04-22 13:18:00.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2012-04-28 10:40:17.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2012-04-28 08:40:17.000 Logging started. ---------------------- 2012-04-28 08:40:17.000 BioCASe protocol used. ---------------------- 2012-04-28 08:40:17.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2012-04-28 08:40:17.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2012-04-28 08:40:17.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-04-28 08:40:17.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2012-04-28 08:40:17.000 Unknown request type! Default to capabilities. ---------------------- 2012-04-28 08:40:17.000 Destination hostname could not be determined ---------------------- 2012-04-28 08:40:17.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2012-04-28 08:40:17.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2012-04-28 08:40:17.000 Reset CMF convenience cache data hash. ---------------------- 2012-04-28 08:40:17.000 Loading CMF from the source XML file. ---------------------- 2012-04-28 08:40:17.000 CMF Version 2.1 detected. ---------------------- 2012-04-28 08:40:17.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2012-04-28 08:40:17.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2012-04-28 08:40:17.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-04-28 08:40:17.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-04-28 08:40:17.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2012-04-28 08:40:17.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2012-04-28 08:40:17.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-04-28 08:40:17.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2012-04-30 05:27:30.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2012-04-30 03:27:30.000 Logging started. ---------------------- 2012-04-30 03:27:30.000 BioCASe protocol used. ---------------------- 2012-04-30 03:27:30.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2012-04-30 03:27:30.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2012-04-30 03:27:30.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-04-30 03:27:30.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2012-04-30 03:27:30.000 Unknown request type! Default to capabilities. ---------------------- 2012-04-30 03:27:30.000 Destination hostname could not be determined ---------------------- 2012-04-30 03:27:30.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2012-04-30 03:27:30.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-04-30 03:27:30.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-04-30 03:27:30.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2012-04-30 03:27:30.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-04-30 03:27:30.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-04-30 03:27:30.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2012-04-30 16:57:22.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2012-04-30 14:57:22.000 Logging started. ---------------------- 2012-04-30 14:57:22.000 BioCASe protocol used. ---------------------- 2012-04-30 14:57:22.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2012-04-30 14:57:22.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2012-04-30 14:57:22.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-04-30 14:57:22.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2012-04-30 14:57:22.000 Unknown request type! Default to capabilities. ---------------------- 2012-04-30 14:57:22.000 Destination hostname could not be determined ---------------------- 2012-04-30 14:57:22.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2012-04-30 14:57:22.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-04-30 14:57:22.000 Pickled file is of latest revision. ---------------------- 2012-04-30 14:57:22.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2012-04-30 14:57:22.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2012-04-30 14:57:22.000 Reset CMF convenience cache data hash. ---------------------- 2012-04-30 14:57:22.000 Loading CMF from the source XML file. ---------------------- 2012-04-30 14:57:22.000 CMF Version 2.1 detected. ---------------------- 2012-04-30 14:57:22.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2012-04-30 14:57:22.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2012-04-30 14:57:22.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-04-30 14:57:22.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-04-30 14:57:22.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2012-05-01 19:56:43.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2012-05-01 17:56:43.000 Logging started. ---------------------- 2012-05-01 17:56:43.000 BioCASe protocol used. ---------------------- 2012-05-01 17:56:43.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2012-05-01 17:56:43.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2012-05-01 17:56:43.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-05-01 17:56:43.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2012-05-01 17:56:43.000 Unknown request type! Default to capabilities. ---------------------- 2012-05-01 17:56:43.000 Destination hostname could not be determined ---------------------- 2012-05-01 17:56:43.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2012-05-01 17:56:43.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-05-01 17:56:43.000 Pickled file is of latest revision. ---------------------- 2012-05-01 17:56:43.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2012-05-01 17:56:43.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2012-05-01 17:56:43.000 Reset CMF convenience cache data hash. ---------------------- 2012-05-01 17:56:43.000 Loading CMF from the source XML file. ---------------------- 2012-05-01 17:56:43.000 CMF Version 2.1 detected. ---------------------- 2012-05-01 17:56:43.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2012-05-01 17:56:43.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2012-05-01 17:56:43.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-05-01 17:56:43.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-05-01 17:56:43.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2012-05-01 20:06:54.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2012-05-01 18:06:54.000 Logging started. ---------------------- 2012-05-01 18:06:54.000 BioCASe protocol used. ---------------------- 2012-05-01 18:06:54.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2012-05-01 18:06:54.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2012-05-01 18:06:54.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-05-01 18:06:54.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2012-05-01 18:06:54.000 Unknown request type! Default to capabilities. ---------------------- 2012-05-01 18:06:54.000 Destination hostname could not be determined ---------------------- 2012-05-01 18:06:54.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2012-05-01 18:06:54.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2012-05-01 18:06:54.000 Reset CMF convenience cache data hash. ---------------------- 2012-05-01 18:06:54.000 Loading CMF from the source XML file. ---------------------- 2012-05-01 18:06:54.000 CMF Version 2.1 detected. ---------------------- 2012-05-01 18:06:54.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2012-05-01 18:06:54.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2012-05-01 18:06:54.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-05-01 18:06:54.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-05-01 18:06:54.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2012-05-01 18:06:54.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2012-05-01 18:06:54.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-05-01 18:06:54.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2012-05-01 20:08:52.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2012-05-01 18:08:52.000 Logging started. ---------------------- 2012-05-01 18:08:52.000 BioCASe protocol used. ---------------------- 2012-05-01 18:08:52.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2012-05-01 18:08:52.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2012-05-01 18:08:52.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-05-01 18:08:52.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2012-05-01 18:08:52.000 Unknown request type! Default to capabilities. ---------------------- 2012-05-01 18:08:52.000 Destination hostname could not be determined ---------------------- 2012-05-01 18:08:52.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2012-05-01 18:08:52.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-05-01 18:08:52.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-05-01 18:08:52.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2012-05-01 18:08:52.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-05-01 18:08:52.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-05-01 18:08:52.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2012-05-08 15:26:55.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2012-05-08 13:26:55.000 Logging started. ---------------------- 2012-05-08 13:26:55.000 BioCASe protocol used. ---------------------- 2012-05-08 13:26:55.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2012-05-08 13:26:55.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2012-05-08 13:26:55.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-05-08 13:26:55.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2012-05-08 13:26:55.000 Unknown request type! Default to capabilities. ---------------------- 2012-05-08 13:26:55.000 Destination hostname could not be determined ---------------------- 2012-05-08 13:26:55.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2012-05-08 13:26:55.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-05-08 13:26:55.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-05-08 13:26:55.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2012-05-08 13:26:55.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-05-08 13:26:55.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-05-08 13:26:55.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2012-05-14 22:34:43.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2012-05-14 20:34:43.000 Logging started. ---------------------- 2012-05-14 20:34:43.000 BioCASe protocol used. ---------------------- 2012-05-14 20:34:43.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2012-05-14 20:34:43.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2012-05-14 20:34:43.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-05-14 20:34:43.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2012-05-14 20:34:43.000 Unknown request type! Default to capabilities. ---------------------- 2012-05-14 20:34:43.000 Destination hostname could not be determined ---------------------- 2012-05-14 20:34:43.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2012-05-14 20:34:43.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-05-14 20:34:43.000 Pickled file is of latest revision. ---------------------- 2012-05-14 20:34:43.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2012-05-14 20:34:43.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2012-05-14 20:34:43.000 Reset CMF convenience cache data hash. ---------------------- 2012-05-14 20:34:43.000 Loading CMF from the source XML file. ---------------------- 2012-05-14 20:34:43.000 CMF Version 2.1 detected. ---------------------- 2012-05-14 20:34:43.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2012-05-14 20:34:43.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2012-05-14 20:34:43.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-05-14 20:34:43.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-05-14 20:34:43.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2012-05-18 03:19:47.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2012-05-18 01:19:47.000 Logging started. ---------------------- 2012-05-18 01:19:47.000 BioCASe protocol used. ---------------------- 2012-05-18 01:19:47.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2012-05-18 01:19:47.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2012-05-18 01:19:47.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-05-18 01:19:47.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2012-05-18 01:19:47.000 Unknown request type! Default to capabilities. ---------------------- 2012-05-18 01:19:47.000 Destination hostname could not be determined ---------------------- 2012-05-18 01:19:47.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2012-05-18 01:19:47.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-05-18 01:19:47.000 Pickled file is of latest revision. ---------------------- 2012-05-18 01:19:47.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2012-05-18 01:19:47.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2012-05-18 01:19:47.000 Reset CMF convenience cache data hash. ---------------------- 2012-05-18 01:19:47.000 Loading CMF from the source XML file. ---------------------- 2012-05-18 01:19:47.000 CMF Version 2.1 detected. ---------------------- 2012-05-18 01:19:47.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2012-05-18 01:19:47.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2012-05-18 01:19:47.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-05-18 01:19:47.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-05-18 01:19:47.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2012-05-18 03:30:21.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2012-05-18 01:30:21.000 Logging started. ---------------------- 2012-05-18 01:30:21.000 BioCASe protocol used. ---------------------- 2012-05-18 01:30:21.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2012-05-18 01:30:21.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2012-05-18 01:30:21.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-05-18 01:30:21.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2012-05-18 01:30:21.000 Unknown request type! Default to capabilities. ---------------------- 2012-05-18 01:30:21.000 Destination hostname could not be determined ---------------------- 2012-05-18 01:30:21.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2012-05-18 01:30:21.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2012-05-18 01:30:21.000 Reset CMF convenience cache data hash. ---------------------- 2012-05-18 01:30:21.000 Loading CMF from the source XML file. ---------------------- 2012-05-18 01:30:21.000 CMF Version 2.1 detected. ---------------------- 2012-05-18 01:30:21.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2012-05-18 01:30:21.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2012-05-18 01:30:21.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-05-18 01:30:21.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-05-18 01:30:21.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2012-05-18 01:30:21.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2012-05-18 01:30:21.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-05-18 01:30:21.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2012-05-18 03:30:23.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2012-05-18 01:30:23.000 Logging started. ---------------------- 2012-05-18 01:30:23.000 BioCASe protocol used. ---------------------- 2012-05-18 01:30:23.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2012-05-18 01:30:23.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2012-05-18 01:30:23.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-05-18 01:30:23.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2012-05-18 01:30:23.000 Unknown request type! Default to capabilities. ---------------------- 2012-05-18 01:30:23.000 Destination hostname could not be determined ---------------------- 2012-05-18 01:30:23.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2012-05-18 01:30:23.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-05-18 01:30:23.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-05-18 01:30:23.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2012-05-18 01:30:23.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-05-18 01:30:23.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-05-18 01:30:23.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2012-05-20 20:56:35.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2012-05-20 18:56:35.000 Logging started. ---------------------- 2012-05-20 18:56:35.000 BioCASe protocol used. ---------------------- 2012-05-20 18:56:35.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2012-05-20 18:56:35.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2012-05-20 18:56:35.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-05-20 18:56:35.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2012-05-20 18:56:35.000 Unknown request type! Default to capabilities. ---------------------- 2012-05-20 18:56:35.000 Destination hostname could not be determined ---------------------- 2012-05-20 18:56:35.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2012-05-20 18:56:35.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-05-20 18:56:35.000 Pickled file is of latest revision. ---------------------- 2012-05-20 18:56:35.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2012-05-20 18:56:35.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2012-05-20 18:56:35.000 Reset CMF convenience cache data hash. ---------------------- 2012-05-20 18:56:35.000 Loading CMF from the source XML file. ---------------------- 2012-05-20 18:56:35.000 CMF Version 2.1 detected. ---------------------- 2012-05-20 18:56:35.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2012-05-20 18:56:35.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2012-05-20 18:56:35.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-05-20 18:56:35.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-05-20 18:56:35.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2012-05-21 00:56:21.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2012-05-20 22:56:21.000 Logging started. ---------------------- 2012-05-20 22:56:21.000 BioCASe protocol used. ---------------------- 2012-05-20 22:56:21.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2012-05-20 22:56:21.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2012-05-20 22:56:21.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-05-20 22:56:21.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2012-05-20 22:56:21.000 Unknown request type! Default to capabilities. ---------------------- 2012-05-20 22:56:21.000 Destination hostname could not be determined ---------------------- 2012-05-20 22:56:21.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2012-05-20 22:56:21.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2012-05-20 22:56:21.000 Reset CMF convenience cache data hash. ---------------------- 2012-05-20 22:56:21.000 Loading CMF from the source XML file. ---------------------- 2012-05-20 22:56:21.000 CMF Version 2.1 detected. ---------------------- 2012-05-20 22:56:21.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2012-05-20 22:56:21.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2012-05-20 22:56:21.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-05-20 22:56:21.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-05-20 22:56:21.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2012-05-20 22:56:21.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2012-05-20 22:56:21.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-05-20 22:56:21.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2012-05-29 01:30:04.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2012-05-28 23:30:04.000 Logging started. ---------------------- 2012-05-28 23:30:04.000 BioCASe protocol used. ---------------------- 2012-05-28 23:30:04.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2012-05-28 23:30:04.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2012-05-28 23:30:04.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-05-28 23:30:04.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2012-05-28 23:30:04.000 Unknown request type! Default to capabilities. ---------------------- 2012-05-28 23:30:04.000 Destination hostname could not be determined ---------------------- 2012-05-28 23:30:04.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2012-05-28 23:30:04.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-05-28 23:30:04.000 Pickled file is of latest revision. ---------------------- 2012-05-28 23:30:04.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2012-05-28 23:30:04.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2012-05-28 23:30:04.000 Reset CMF convenience cache data hash. ---------------------- 2012-05-28 23:30:04.000 Loading CMF from the source XML file. ---------------------- 2012-05-28 23:30:04.000 CMF Version 2.1 detected. ---------------------- 2012-05-28 23:30:04.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2012-05-28 23:30:04.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2012-05-28 23:30:04.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-05-28 23:30:04.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-05-28 23:30:04.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2012-05-29 01:30:11.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2012-05-28 23:30:11.000 Logging started. ---------------------- 2012-05-28 23:30:11.000 BioCASe protocol used. ---------------------- 2012-05-28 23:30:11.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2012-05-28 23:30:11.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2012-05-28 23:30:11.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-05-28 23:30:11.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2012-05-28 23:30:11.000 Unknown request type! Default to capabilities. ---------------------- 2012-05-28 23:30:11.000 Destination hostname could not be determined ---------------------- 2012-05-28 23:30:11.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2012-05-28 23:30:11.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2012-05-28 23:30:11.000 Reset CMF convenience cache data hash. ---------------------- 2012-05-28 23:30:11.000 Loading CMF from the source XML file. ---------------------- 2012-05-28 23:30:11.000 CMF Version 2.1 detected. ---------------------- 2012-05-28 23:30:11.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2012-05-28 23:30:11.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2012-05-28 23:30:11.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-05-28 23:30:11.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-05-28 23:30:11.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2012-05-28 23:30:11.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2012-05-28 23:30:11.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-05-28 23:30:11.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2012-05-29 01:30:25.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2012-05-28 23:30:25.000 Logging started. ---------------------- 2012-05-28 23:30:25.000 BioCASe protocol used. ---------------------- 2012-05-28 23:30:25.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2012-05-28 23:30:25.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2012-05-28 23:30:25.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-05-28 23:30:25.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2012-05-28 23:30:25.000 Unknown request type! Default to capabilities. ---------------------- 2012-05-28 23:30:25.000 Destination hostname could not be determined ---------------------- 2012-05-28 23:30:25.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2012-05-28 23:30:25.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-05-28 23:30:25.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-05-28 23:30:25.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2012-05-28 23:30:25.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-05-28 23:30:25.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-05-28 23:30:25.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2012-05-29 04:46:11.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2012-05-29 02:46:11.000 Logging started. ---------------------- 2012-05-29 02:46:11.000 BioCASe protocol used. ---------------------- 2012-05-29 02:46:11.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2012-05-29 02:46:11.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2012-05-29 02:46:11.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-05-29 02:46:11.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2012-05-29 02:46:11.000 Unknown request type! Default to capabilities. ---------------------- 2012-05-29 02:46:11.000 Destination hostname could not be determined ---------------------- 2012-05-29 02:46:11.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2012-05-29 02:46:11.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-05-29 02:46:11.000 Pickled file is of latest revision. ---------------------- 2012-05-29 02:46:11.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2012-05-29 02:46:11.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2012-05-29 02:46:11.000 Reset CMF convenience cache data hash. ---------------------- 2012-05-29 02:46:11.000 Loading CMF from the source XML file. ---------------------- 2012-05-29 02:46:11.000 CMF Version 2.1 detected. ---------------------- 2012-05-29 02:46:11.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2012-05-29 02:46:11.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2012-05-29 02:46:11.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-05-29 02:46:11.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-05-29 02:46:11.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2012-05-29 04:46:18.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2012-05-29 02:46:18.000 Logging started. ---------------------- 2012-05-29 02:46:18.000 BioCASe protocol used. ---------------------- 2012-05-29 02:46:18.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2012-05-29 02:46:18.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2012-05-29 02:46:18.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-05-29 02:46:18.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2012-05-29 02:46:18.000 Unknown request type! Default to capabilities. ---------------------- 2012-05-29 02:46:18.000 Destination hostname could not be determined ---------------------- 2012-05-29 02:46:18.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2012-05-29 02:46:18.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2012-05-29 02:46:18.000 Reset CMF convenience cache data hash. ---------------------- 2012-05-29 02:46:18.000 Loading CMF from the source XML file. ---------------------- 2012-05-29 02:46:18.000 CMF Version 2.1 detected. ---------------------- 2012-05-29 02:46:18.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2012-05-29 02:46:18.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2012-05-29 02:46:18.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-05-29 02:46:18.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-05-29 02:46:18.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2012-05-29 02:46:18.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2012-05-29 02:46:18.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-05-29 02:46:18.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2012-05-29 04:46:32.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2012-05-29 02:46:32.000 Logging started. ---------------------- 2012-05-29 02:46:32.000 BioCASe protocol used. ---------------------- 2012-05-29 02:46:32.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2012-05-29 02:46:32.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2012-05-29 02:46:32.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-05-29 02:46:32.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2012-05-29 02:46:32.000 Unknown request type! Default to capabilities. ---------------------- 2012-05-29 02:46:32.000 Destination hostname could not be determined ---------------------- 2012-05-29 02:46:32.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2012-05-29 02:46:32.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-05-29 02:46:32.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-05-29 02:46:32.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2012-05-29 02:46:32.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-05-29 02:46:32.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-05-29 02:46:32.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2012-05-30 21:51:00.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2012-05-30 19:51:00.000 Logging started. ---------------------- 2012-05-30 19:51:00.000 BioCASe protocol used. ---------------------- 2012-05-30 19:51:00.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2012-05-30 19:51:00.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2012-05-30 19:51:00.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-05-30 19:51:00.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2012-05-30 19:51:00.000 Unknown request type! Default to capabilities. ---------------------- 2012-05-30 19:51:00.000 Destination hostname could not be determined ---------------------- 2012-05-30 19:51:00.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2012-05-30 19:51:00.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-05-30 19:51:00.000 Pickled file is of latest revision. ---------------------- 2012-05-30 19:51:00.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2012-05-30 19:51:00.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2012-05-30 19:51:00.000 Reset CMF convenience cache data hash. ---------------------- 2012-05-30 19:51:00.000 Loading CMF from the source XML file. ---------------------- 2012-05-30 19:51:00.000 CMF Version 2.1 detected. ---------------------- 2012-05-30 19:51:00.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2012-05-30 19:51:00.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2012-05-30 19:51:00.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-05-30 19:51:00.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-05-30 19:51:00.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2012-05-30 21:51:07.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2012-05-30 19:51:07.000 Logging started. ---------------------- 2012-05-30 19:51:07.000 BioCASe protocol used. ---------------------- 2012-05-30 19:51:07.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2012-05-30 19:51:07.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2012-05-30 19:51:07.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-05-30 19:51:07.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2012-05-30 19:51:07.000 Unknown request type! Default to capabilities. ---------------------- 2012-05-30 19:51:07.000 Destination hostname could not be determined ---------------------- 2012-05-30 19:51:07.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2012-05-30 19:51:07.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2012-05-30 19:51:07.000 Reset CMF convenience cache data hash. ---------------------- 2012-05-30 19:51:07.000 Loading CMF from the source XML file. ---------------------- 2012-05-30 19:51:07.000 CMF Version 2.1 detected. ---------------------- 2012-05-30 19:51:07.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2012-05-30 19:51:07.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2012-05-30 19:51:07.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-05-30 19:51:07.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-05-30 19:51:07.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2012-05-30 19:51:07.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2012-05-30 19:51:07.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-05-30 19:51:07.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2012-05-30 21:51:21.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2012-05-30 19:51:21.000 Logging started. ---------------------- 2012-05-30 19:51:21.000 BioCASe protocol used. ---------------------- 2012-05-30 19:51:21.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2012-05-30 19:51:21.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2012-05-30 19:51:21.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-05-30 19:51:21.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2012-05-30 19:51:21.000 Unknown request type! Default to capabilities. ---------------------- 2012-05-30 19:51:21.000 Destination hostname could not be determined ---------------------- 2012-05-30 19:51:21.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2012-05-30 19:51:21.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-05-30 19:51:21.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-05-30 19:51:21.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2012-05-30 19:51:21.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-05-30 19:51:21.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-05-30 19:51:21.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2012-05-31 06:31:58.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2012-05-31 04:31:58.000 Logging started. ---------------------- 2012-05-31 04:31:58.000 BioCASe protocol used. ---------------------- 2012-05-31 04:31:58.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2012-05-31 04:31:58.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2012-05-31 04:31:58.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-05-31 04:31:58.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2012-05-31 04:31:58.000 Unknown request type! Default to capabilities. ---------------------- 2012-05-31 04:31:58.000 Destination hostname could not be determined ---------------------- 2012-05-31 04:31:58.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2012-05-31 04:31:58.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2012-05-31 04:31:58.000 Reset CMF convenience cache data hash. ---------------------- 2012-05-31 04:31:58.000 Loading CMF from the source XML file. ---------------------- 2012-05-31 04:31:58.000 CMF Version 2.1 detected. ---------------------- 2012-05-31 04:31:58.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2012-05-31 04:31:58.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2012-05-31 04:31:58.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-05-31 04:31:58.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-05-31 04:31:58.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2012-05-31 04:31:58.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2012-05-31 04:31:58.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-05-31 04:31:58.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2012-05-31 18:10:00.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2012-05-31 16:10:00.000 Logging started. ---------------------- 2012-05-31 16:10:00.000 BioCASe protocol used. ---------------------- 2012-05-31 16:10:00.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2012-05-31 16:10:00.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2012-05-31 16:10:00.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-05-31 16:10:00.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2012-05-31 16:10:00.000 Unknown request type! Default to capabilities. ---------------------- 2012-05-31 16:10:00.000 Destination hostname could not be determined ---------------------- 2012-05-31 16:10:00.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2012-05-31 16:10:00.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2012-05-31 16:10:00.000 Reset CMF convenience cache data hash. ---------------------- 2012-05-31 16:10:00.000 Loading CMF from the source XML file. ---------------------- 2012-05-31 16:10:00.000 CMF Version 2.1 detected. ---------------------- 2012-05-31 16:10:00.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2012-05-31 16:10:00.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2012-05-31 16:10:00.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-05-31 16:10:00.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-05-31 16:10:00.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2012-05-31 16:10:00.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2012-05-31 16:10:00.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-05-31 16:10:00.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2012-06-01 13:30:12.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2012-06-01 11:30:12.000 Logging started. ---------------------- 2012-06-01 11:30:12.000 BioCASe protocol used. ---------------------- 2012-06-01 11:30:12.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2012-06-01 11:30:12.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2012-06-01 11:30:12.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-06-01 11:30:12.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2012-06-01 11:30:12.000 Unknown request type! Default to capabilities. ---------------------- 2012-06-01 11:30:12.000 Destination hostname could not be determined ---------------------- 2012-06-01 11:30:12.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2012-06-01 11:30:12.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-06-01 11:30:12.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-06-01 11:30:12.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2012-06-01 11:30:12.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-06-01 11:30:12.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-06-01 11:30:12.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2012-06-02 13:36:02.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2012-06-02 11:36:02.000 Logging started. ---------------------- 2012-06-02 11:36:02.000 BioCASe protocol used. ---------------------- 2012-06-02 11:36:02.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2012-06-02 11:36:02.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2012-06-02 11:36:02.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-06-02 11:36:02.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2012-06-02 11:36:02.000 Unknown request type! Default to capabilities. ---------------------- 2012-06-02 11:36:02.000 Destination hostname could not be determined ---------------------- 2012-06-02 11:36:02.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2012-06-02 11:36:02.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-06-02 11:36:02.000 Pickled file is of latest revision. ---------------------- 2012-06-02 11:36:02.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2012-06-02 11:36:02.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2012-06-02 11:36:02.000 Reset CMF convenience cache data hash. ---------------------- 2012-06-02 11:36:02.000 Loading CMF from the source XML file. ---------------------- 2012-06-02 11:36:02.000 CMF Version 2.1 detected. ---------------------- 2012-06-02 11:36:02.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2012-06-02 11:36:02.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2012-06-02 11:36:02.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-06-02 11:36:02.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-06-02 11:36:02.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2012-06-03 14:28:42.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2012-06-03 12:28:42.000 Logging started. ---------------------- 2012-06-03 12:28:42.000 BioCASe protocol used. ---------------------- 2012-06-03 12:28:42.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2012-06-03 12:28:42.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2012-06-03 12:28:42.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-06-03 12:28:42.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2012-06-03 12:28:42.000 Unknown request type! Default to capabilities. ---------------------- 2012-06-03 12:28:42.000 Destination hostname could not be determined ---------------------- 2012-06-03 12:28:42.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2012-06-03 12:28:42.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-06-03 12:28:42.000 Pickled file is of latest revision. ---------------------- 2012-06-03 12:28:42.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2012-06-03 12:28:42.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2012-06-03 12:28:42.000 Reset CMF convenience cache data hash. ---------------------- 2012-06-03 12:28:42.000 Loading CMF from the source XML file. ---------------------- 2012-06-03 12:28:42.000 CMF Version 2.1 detected. ---------------------- 2012-06-03 12:28:42.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2012-06-03 12:28:42.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2012-06-03 12:28:42.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-06-03 12:28:42.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-06-03 12:28:42.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2012-06-05 06:27:04.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2012-06-05 04:27:04.000 Logging started. ---------------------- 2012-06-05 04:27:04.000 BioCASe protocol used. ---------------------- 2012-06-05 04:27:04.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2012-06-05 04:27:04.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2012-06-05 04:27:04.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-06-05 04:27:04.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2012-06-05 04:27:04.000 Unknown request type! Default to capabilities. ---------------------- 2012-06-05 04:27:04.000 Destination hostname could not be determined ---------------------- 2012-06-05 04:27:04.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2012-06-05 04:27:04.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2012-06-05 04:27:04.000 Reset CMF convenience cache data hash. ---------------------- 2012-06-05 04:27:04.000 Loading CMF from the source XML file. ---------------------- 2012-06-05 04:27:04.000 CMF Version 2.1 detected. ---------------------- 2012-06-05 04:27:04.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2012-06-05 04:27:04.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2012-06-05 04:27:04.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-06-05 04:27:04.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-06-05 04:27:04.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2012-06-05 04:27:04.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2012-06-05 04:27:04.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-06-05 04:27:04.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2012-06-05 08:50:30.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2012-06-05 08:50:30.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString qjxiFURNXsrs LKiPiSvyUBj cHtueSphrLWdRIyAwsq jonn1 BfyLMmuj cHejibcuagWNqyVQD xYvrBDFGiVFY PmNVMUbhSMniFUCsoCc IzjoGxOgnh jonn1
### ERROR LOG The Logging Results: ---------------------- 2012-06-05 06:50:30.000 Logging started. ---------------------- 2012-06-05 06:50:30.000 BioCASe protocol used. ---------------------- 2012-06-05 06:50:30.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2012-06-05 06:50:30.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2012-06-05 06:50:30.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-06-05 06:50:30.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-06-05 06:50:30.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-06-05 08:50:30.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n qjxiFURNXsrs\n LKiPiSvyUBj\n cHtueSphrLWdRIyAwsq\n jonn1\n BfyLMmuj\n cHejibcuagWNqyVQD\n xYvrBDFGiVFY\n PmNVMUbhSMniFUCsoCc\n IzjoGxOgnh\n jonn1\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-06-05 08:50:30.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n qjxiFURNXsrs\n LKiPiSvyUBj\n cHtueSphrLWdRIyAwsq\n jonn1\n BfyLMmuj\n cHejibcuagWNqyVQD\n xYvrBDFGiVFY\n PmNVMUbhSMniFUCsoCc\n IzjoGxOgnh\n jonn1\n\n\n\n \n
'} ---------------------- 2012-06-05 06:50:30.000 Found online debuglevel setting: 1 ---------------------- 2012-06-05 06:50:30.000 Setting debuglevel from 0 to 1 ---------------------- 2012-06-05 06:50:30.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-06-05 06:50:30.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-06-05 06:50:30.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2012-06-05 06:50:30.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-06-05 06:50:30.000 Pickled file is of latest revision. ---------------------- 2012-06-05 06:50:30.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-06-05 06:50:30.000 Original filter string parsed:
2.4.2 2012-06-05 08:50:30.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString qjxiFURNXsrs LKiPiSvyUBj cHtueSphrLWdRIyAwsq jonn1 BfyLMmuj cHejibcuagWNqyVQD xYvrBDFGiVFY PmNVMUbhSMniFUCsoCc IzjoGxOgnh jonn1
---------------------- 2012-06-05 06:50:30.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE qjxiFURNXsrs ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = LKiPiSvyUBj ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE cHtueSphrLWdRIyAwsq ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE jonn1 ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE BfyLMmuj ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE cHejibcuagWNqyVQD ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE xYvrBDFGiVFY ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = PmNVMUbhSMniFUCsoCc ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = IzjoGxOgnh ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jonn1 )) ---------------------- 2012-06-05 06:50:30.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE qjxiFURNXsrs ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = LKiPiSvyUBj ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE cHtueSphrLWdRIyAwsq ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE jonn1 ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE BfyLMmuj ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE cHejibcuagWNqyVQD ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE xYvrBDFGiVFY ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = PmNVMUbhSMniFUCsoCc ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = IzjoGxOgnh ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jonn1 )) ---------------------- 2012-06-05 06:50:30.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE qjxiFURNXsrs ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = LKiPiSvyUBj ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE cHtueSphrLWdRIyAwsq ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE jonn1 ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE BfyLMmuj ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE cHejibcuagWNqyVQD ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE xYvrBDFGiVFY ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = PmNVMUbhSMniFUCsoCc ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = IzjoGxOgnh ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jonn1 )) ---------------------- 2012-06-05 06:50:30.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE qjxiFURNXsrs ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = LKiPiSvyUBj ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE cHtueSphrLWdRIyAwsq ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE jonn1 ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE BfyLMmuj ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE cHejibcuagWNqyVQD ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE xYvrBDFGiVFY ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = PmNVMUbhSMniFUCsoCc ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = IzjoGxOgnh ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jonn1 )) ---------------------- 2012-06-05 06:50:30.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2012-06-05 06:50:30.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'qjxiFURNXsrs' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'LKiPiSvyUBj' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'cHtueSphrLWdRIyAwsq' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'jonn1' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'BfyLMmuj' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'cHejibcuagWNqyVQD' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'xYvrBDFGiVFY' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'PmNVMUbhSMniFUCsoCc' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'IzjoGxOgnh' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'jonn1' ))' ---------------------- 2012-06-05 06:50:30.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "LKiPiSvyUBj" ---------------------- 2012-06-05 06:50:30.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2012-06-07 07:42:53.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2012-06-07 05:42:53.000 Logging started. ---------------------- 2012-06-07 05:42:53.000 BioCASe protocol used. ---------------------- 2012-06-07 05:42:53.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2012-06-07 05:42:53.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2012-06-07 05:42:53.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-06-07 05:42:53.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2012-06-07 05:42:53.000 Unknown request type! Default to capabilities. ---------------------- 2012-06-07 05:42:53.000 Destination hostname could not be determined ---------------------- 2012-06-07 05:42:53.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2012-06-07 05:42:53.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-06-07 05:42:53.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-06-07 05:42:53.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2012-06-07 05:42:53.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-06-07 05:42:53.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-06-07 05:42:53.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2012-06-09 19:37:50.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2012-06-09 19:37:50.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString NsYJQbuUllWswH ODurXlavJS YkRapDUPw pzlytx oZuGocOdXYtRxsAPE OeKtuKKVBWDm pFNydNFbcXbrkjGLx NbXhiphoWG ShFcKZJUalrRz pzlytx
### ERROR LOG The Logging Results: ---------------------- 2012-06-09 17:37:50.000 Logging started. ---------------------- 2012-06-09 17:37:50.000 BioCASe protocol used. ---------------------- 2012-06-09 17:37:50.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2012-06-09 17:37:50.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2012-06-09 17:37:50.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-06-09 17:37:50.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-06-09 17:37:50.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-06-09 19:37:50.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n NsYJQbuUllWswH\n ODurXlavJS\n YkRapDUPw\n pzlytx\n oZuGocOdXYtRxsAPE\n OeKtuKKVBWDm\n pFNydNFbcXbrkjGLx\n NbXhiphoWG\n ShFcKZJUalrRz\n pzlytx\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-06-09 19:37:50.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n NsYJQbuUllWswH\n ODurXlavJS\n YkRapDUPw\n pzlytx\n oZuGocOdXYtRxsAPE\n OeKtuKKVBWDm\n pFNydNFbcXbrkjGLx\n NbXhiphoWG\n ShFcKZJUalrRz\n pzlytx\n\n\n\n \n
'} ---------------------- 2012-06-09 17:37:50.000 Found online debuglevel setting: 1 ---------------------- 2012-06-09 17:37:50.000 Setting debuglevel from 0 to 1 ---------------------- 2012-06-09 17:37:50.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-06-09 17:37:50.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-06-09 17:37:50.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2012-06-09 17:37:50.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-06-09 17:37:50.000 Pickled file is of latest revision. ---------------------- 2012-06-09 17:37:50.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-06-09 17:37:50.000 Original filter string parsed:
2.4.2 2012-06-09 19:37:50.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString NsYJQbuUllWswH ODurXlavJS YkRapDUPw pzlytx oZuGocOdXYtRxsAPE OeKtuKKVBWDm pFNydNFbcXbrkjGLx NbXhiphoWG ShFcKZJUalrRz pzlytx
---------------------- 2012-06-09 17:37:50.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE NsYJQbuUllWswH ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ODurXlavJS ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE YkRapDUPw ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE pzlytx ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE oZuGocOdXYtRxsAPE ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE OeKtuKKVBWDm ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE pFNydNFbcXbrkjGLx ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = NbXhiphoWG ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ShFcKZJUalrRz ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE pzlytx )) ---------------------- 2012-06-09 17:37:50.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE NsYJQbuUllWswH ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ODurXlavJS ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE YkRapDUPw ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE pzlytx ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE oZuGocOdXYtRxsAPE ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE OeKtuKKVBWDm ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE pFNydNFbcXbrkjGLx ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = NbXhiphoWG ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ShFcKZJUalrRz ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE pzlytx )) ---------------------- 2012-06-09 17:37:50.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE NsYJQbuUllWswH ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ODurXlavJS ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE YkRapDUPw ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE pzlytx ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE oZuGocOdXYtRxsAPE ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE OeKtuKKVBWDm ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE pFNydNFbcXbrkjGLx ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = NbXhiphoWG ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ShFcKZJUalrRz ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE pzlytx )) ---------------------- 2012-06-09 17:37:50.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE NsYJQbuUllWswH ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = ODurXlavJS ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE YkRapDUPw ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE pzlytx ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE oZuGocOdXYtRxsAPE ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE OeKtuKKVBWDm ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE pFNydNFbcXbrkjGLx ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = NbXhiphoWG ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ShFcKZJUalrRz ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE pzlytx )) ---------------------- 2012-06-09 17:37:50.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2012-06-09 17:37:50.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'NsYJQbuUllWswH' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'ODurXlavJS' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'YkRapDUPw' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'pzlytx' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'oZuGocOdXYtRxsAPE' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'OeKtuKKVBWDm' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'pFNydNFbcXbrkjGLx' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'NbXhiphoWG' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'ShFcKZJUalrRz' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'pzlytx' ))' ---------------------- 2012-06-09 17:37:50.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "ODurXlavJS" ---------------------- 2012-06-09 17:37:50.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2012-06-12 17:58:58.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians ---------------------- 2012-07-06 17:39:06.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2012-07-06 17:39:06.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2012-07-06 17:39:06.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-07-06 17:39:06.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2012-07-08 19:22:02.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2012-07-08 17:22:02.000 Logging started. ---------------------- 2012-07-08 17:22:02.000 BioCASe protocol used. ---------------------- 2012-07-08 17:22:02.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2012-07-08 17:22:02.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2012-07-08 17:22:02.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-07-08 17:22:02.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2012-07-08 17:22:02.000 Unknown request type! Default to capabilities. ---------------------- 2012-07-08 17:22:02.000 Destination hostname could not be determined ---------------------- 2012-07-08 17:22:02.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2012-07-08 17:22:02.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-07-08 17:22:02.000 Pickled file is of latest revision. ---------------------- 2012-07-08 17:22:02.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2012-07-08 17:22:02.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2012-07-08 17:22:02.000 Reset CMF convenience cache data hash. ---------------------- 2012-07-08 17:22:02.000 Loading CMF from the source XML file. ---------------------- 2012-07-08 17:22:02.000 CMF Version 2.1 detected. ---------------------- 2012-07-08 17:22:02.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2012-07-08 17:22:02.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2012-07-08 17:22:02.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-07-08 17:22:02.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-07-08 17:22:02.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2012-07-09 03:55:51.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2012-07-09 01:55:51.000 Logging started. ---------------------- 2012-07-09 01:55:51.000 BioCASe protocol used. ---------------------- 2012-07-09 01:55:51.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2012-07-09 01:55:51.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2012-07-09 01:55:51.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-07-09 01:55:51.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2012-07-09 01:55:51.000 Unknown request type! Default to capabilities. ---------------------- 2012-07-09 01:55:51.000 Destination hostname could not be determined ---------------------- 2012-07-09 01:55:51.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2012-07-09 01:55:51.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-07-09 01:55:51.000 Pickled file is of latest revision. ---------------------- 2012-07-09 01:55:51.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2012-07-09 01:55:51.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2012-07-09 01:55:51.000 Reset CMF convenience cache data hash. ---------------------- 2012-07-09 01:55:51.000 Loading CMF from the source XML file. ---------------------- 2012-07-09 01:55:51.000 CMF Version 2.1 detected. ---------------------- 2012-07-09 01:55:51.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2012-07-09 01:55:51.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2012-07-09 01:55:51.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-07-09 01:55:51.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-07-09 01:55:51.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2012-07-10 14:43:28.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2012-07-10 12:43:28.000 Logging started. ---------------------- 2012-07-10 12:43:28.000 BioCASe protocol used. ---------------------- 2012-07-10 12:43:28.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2012-07-10 12:43:28.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2012-07-10 12:43:28.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-07-10 12:43:28.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2012-07-10 12:43:28.000 Unknown request type! Default to capabilities. ---------------------- 2012-07-10 12:43:28.000 Destination hostname could not be determined ---------------------- 2012-07-10 12:43:28.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2012-07-10 12:43:28.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-07-10 12:43:28.000 Pickled file is of latest revision. ---------------------- 2012-07-10 12:43:28.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2012-07-10 12:43:28.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2012-07-10 12:43:28.000 Reset CMF convenience cache data hash. ---------------------- 2012-07-10 12:43:28.000 Loading CMF from the source XML file. ---------------------- 2012-07-10 12:43:28.000 CMF Version 2.1 detected. ---------------------- 2012-07-10 12:43:28.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2012-07-10 12:43:28.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2012-07-10 12:43:28.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-07-10 12:43:28.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-07-10 12:43:28.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2012-07-12 15:16:00.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2012-07-12 13:16:00.000 Logging started. ---------------------- 2012-07-12 13:16:00.000 BioCASe protocol used. ---------------------- 2012-07-12 13:16:00.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2012-07-12 13:16:00.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2012-07-12 13:16:00.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-07-12 13:16:00.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2012-07-12 13:16:00.000 Unknown request type! Default to capabilities. ---------------------- 2012-07-12 13:16:00.000 Destination hostname could not be determined ---------------------- 2012-07-12 13:16:00.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2012-07-12 13:16:00.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2012-07-12 13:16:00.000 Reset CMF convenience cache data hash. ---------------------- 2012-07-12 13:16:01.000 Loading CMF from the source XML file. ---------------------- 2012-07-12 13:16:01.000 CMF Version 2.1 detected. ---------------------- 2012-07-12 13:16:01.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2012-07-12 13:16:01.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2012-07-12 13:16:01.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-07-12 13:16:01.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-07-12 13:16:01.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2012-07-12 13:16:01.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2012-07-12 13:16:01.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-07-12 13:16:01.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2012-07-14 16:47:43.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2012-07-14 14:47:43.000 Logging started. ---------------------- 2012-07-14 14:47:43.000 BioCASe protocol used. ---------------------- 2012-07-14 14:47:43.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2012-07-14 14:47:43.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2012-07-14 14:47:43.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-07-14 14:47:43.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2012-07-14 14:47:43.000 Unknown request type! Default to capabilities. ---------------------- 2012-07-14 14:47:43.000 Destination hostname could not be determined ---------------------- 2012-07-14 14:47:43.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2012-07-14 14:47:43.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-07-14 14:47:43.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-07-14 14:47:43.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2012-07-14 14:47:43.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-07-14 14:47:43.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-07-14 14:47:43.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2012-07-16 23:07:44.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2012-07-16 21:07:44.000 Logging started. ---------------------- 2012-07-16 21:07:44.000 BioCASe protocol used. ---------------------- 2012-07-16 21:07:44.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2012-07-16 21:07:44.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2012-07-16 21:07:44.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-07-16 21:07:44.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2012-07-16 21:07:44.000 Unknown request type! Default to capabilities. ---------------------- 2012-07-16 21:07:44.000 Destination hostname could not be determined ---------------------- 2012-07-16 21:07:44.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2012-07-16 21:07:44.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-07-16 21:07:44.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-07-16 21:07:44.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2012-07-16 21:07:44.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-07-16 21:07:44.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-07-16 21:07:44.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2012-07-18 00:29:34.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians20070608
2.4.2 2012-07-18 00:29:34.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA ahplmv@pmbllz.com USA bfhiflwhdzy USA 748045 USA ahplmv@pmbllz.com bfhiflwhdzy bfhiflwhdzy
### ERROR LOG The Logging Results: ---------------------- 2012-07-17 22:29:34.000 Logging started. ---------------------- 2012-07-17 22:29:34.000 BioCASe protocol used. ---------------------- 2012-07-17 22:29:34.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2012-07-17 22:29:34.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2012-07-17 22:29:34.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-07-17 22:29:34.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-07-17 22:29:34.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-07-18 00:29:34.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n ahplmv@pmbllz.com\n USA\n bfhiflwhdzy\n USA\n 748045\n USA\n ahplmv@pmbllz.com\n bfhiflwhdzy\n bfhiflwhdzy\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-07-18 00:29:34.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n ahplmv@pmbllz.com\n USA\n bfhiflwhdzy\n USA\n 748045\n USA\n ahplmv@pmbllz.com\n bfhiflwhdzy\n bfhiflwhdzy\n\n\n\n \n
'} ---------------------- 2012-07-17 22:29:34.000 Found online debuglevel setting: 1 ---------------------- 2012-07-17 22:29:34.000 Setting debuglevel from 0 to 1 ---------------------- 2012-07-17 22:29:34.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-07-17 22:29:34.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-07-17 22:29:34.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2012-07-17 22:29:34.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2012-07-17 22:29:34.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 231, in getCMFobject CMFObject.loadCMFdata(self.psfObj.getCMFfilename(namespace), psfObj=self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-07-17 22:29:34.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 118, in scan self.CMFObject = self.getCMFobject(self.requestObj.reqSchema, altRootTableKey=self.altRootTableAlias) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 237, in getCMFobject raise CMFError(log=self.logObj, cmf=namespace) CMFError: ---------------------- 2012-07-17 22:29:34.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2012-07-19 09:54:42.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2012-07-19 09:54:41.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA kjsjdb@zludgi.com USA ugmlnpf USA 577418 USA kjsjdb@zludgi.com ugmlnpf ugmlnpf
### ERROR LOG The Logging Results: ---------------------- 2012-07-19 07:54:42.000 Logging started. ---------------------- 2012-07-19 07:54:42.000 BioCASe protocol used. ---------------------- 2012-07-19 07:54:42.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2012-07-19 07:54:42.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2012-07-19 07:54:42.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-07-19 07:54:42.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-07-19 07:54:42.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-07-19 09:54:41.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n kjsjdb@zludgi.com\n USA\n ugmlnpf\n USA\n 577418\n USA\n kjsjdb@zludgi.com\n ugmlnpf\n ugmlnpf\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-07-19 09:54:41.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n kjsjdb@zludgi.com\n USA\n ugmlnpf\n USA\n 577418\n USA\n kjsjdb@zludgi.com\n ugmlnpf\n ugmlnpf\n\n\n\n \n
'} ---------------------- 2012-07-19 07:54:42.000 Found online debuglevel setting: 1 ---------------------- 2012-07-19 07:54:42.000 Setting debuglevel from 0 to 1 ---------------------- 2012-07-19 07:54:42.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-07-19 07:54:42.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-07-19 07:54:42.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2012-07-19 07:54:42.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-07-19 07:54:42.000 Pickled file is of latest revision. ---------------------- 2012-07-19 07:54:42.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-07-19 07:54:42.000 Original filter string parsed:
2.4.2 2012-07-19 09:54:41.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA kjsjdb@zludgi.com USA ugmlnpf USA 577418 USA kjsjdb@zludgi.com ugmlnpf ugmlnpf
---------------------- 2012-07-19 07:54:42.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = kjsjdb@zludgi.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE ugmlnpf ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 577418 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = kjsjdb@zludgi.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ugmlnpf ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE ugmlnpf )) ---------------------- 2012-07-19 07:54:42.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = kjsjdb@zludgi.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE ugmlnpf ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 577418 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = kjsjdb@zludgi.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ugmlnpf ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE ugmlnpf )) ---------------------- 2012-07-19 07:54:42.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = kjsjdb@zludgi.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE ugmlnpf ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 577418 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = kjsjdb@zludgi.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ugmlnpf ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE ugmlnpf )) ---------------------- 2012-07-19 07:54:42.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = kjsjdb@zludgi.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE ugmlnpf ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 577418 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = kjsjdb@zludgi.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = ugmlnpf ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE ugmlnpf )) ---------------------- 2012-07-19 07:54:42.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2012-07-19 07:54:42.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'kjsjdb@zludgi.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'ugmlnpf' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '577418' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'kjsjdb@zludgi.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'ugmlnpf' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'ugmlnpf' ))' ---------------------- 2012-07-19 07:54:42.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "kjsjdb@zludgi.com" ---------------------- 2012-07-19 07:54:42.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2012-07-19 20:25:34.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2012-07-19 18:25:34.000 Logging started. ---------------------- 2012-07-19 18:25:34.000 BioCASe protocol used. ---------------------- 2012-07-19 18:25:34.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2012-07-19 18:25:34.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2012-07-19 18:25:34.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-07-19 18:25:34.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2012-07-19 18:25:34.000 Unknown request type! Default to capabilities. ---------------------- 2012-07-19 18:25:34.000 Destination hostname could not be determined ---------------------- 2012-07-19 18:25:34.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2012-07-19 18:25:34.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2012-07-19 18:25:34.000 Reset CMF convenience cache data hash. ---------------------- 2012-07-19 18:25:34.000 Loading CMF from the source XML file. ---------------------- 2012-07-19 18:25:34.000 CMF Version 2.1 detected. ---------------------- 2012-07-19 18:25:34.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2012-07-19 18:25:34.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2012-07-19 18:25:34.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-07-19 18:25:34.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-07-19 18:25:34.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2012-07-19 18:25:34.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2012-07-19 18:25:34.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-07-19 18:25:34.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2012-07-27 07:03:28.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2012-07-27 07:03:28.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString hjYZEirnVekBPQA freelife@yahoo.com AznRMQWrP Gabriel USA 491689 OsOg4 GouKoCZmiAQOmBnajKr freelife@yahoo.com PdMCegEMgtSs
### ERROR LOG The Logging Results: ---------------------- 2012-07-27 05:03:28.000 Logging started. ---------------------- 2012-07-27 05:03:28.000 BioCASe protocol used. ---------------------- 2012-07-27 05:03:28.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2012-07-27 05:03:28.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2012-07-27 05:03:28.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-07-27 05:03:28.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-07-27 05:03:28.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-07-27 07:03:28.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n hjYZEirnVekBPQA\n freelife@yahoo.com\n AznRMQWrP\n Gabriel\n USA\n 491689\n OsOg4\n GouKoCZmiAQOmBnajKr\n freelife@yahoo.com\n PdMCegEMgtSs\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-07-27 07:03:28.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n hjYZEirnVekBPQA\n freelife@yahoo.com\n AznRMQWrP\n Gabriel\n USA\n 491689\n OsOg4\n GouKoCZmiAQOmBnajKr\n freelife@yahoo.com\n PdMCegEMgtSs\n\n\n\n \n
'} ---------------------- 2012-07-27 05:03:28.000 Found online debuglevel setting: 1 ---------------------- 2012-07-27 05:03:28.000 Setting debuglevel from 0 to 1 ---------------------- 2012-07-27 05:03:28.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-07-27 05:03:29.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-07-27 05:03:29.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2012-07-27 05:03:29.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-07-27 05:03:34.000 Pickled file is of latest revision. ---------------------- 2012-07-27 05:03:34.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-07-27 05:03:34.000 Original filter string parsed:
2.4.2 2012-07-27 07:03:28.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString hjYZEirnVekBPQA freelife@yahoo.com AznRMQWrP Gabriel USA 491689 OsOg4 GouKoCZmiAQOmBnajKr freelife@yahoo.com PdMCegEMgtSs
---------------------- 2012-07-27 05:03:34.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE hjYZEirnVekBPQA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = freelife@yahoo.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE AznRMQWrP ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Gabriel ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 491689 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE OsOg4 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = GouKoCZmiAQOmBnajKr ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = freelife@yahoo.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE PdMCegEMgtSs )) ---------------------- 2012-07-27 05:03:34.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE hjYZEirnVekBPQA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = freelife@yahoo.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE AznRMQWrP ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Gabriel ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 491689 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE OsOg4 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = GouKoCZmiAQOmBnajKr ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = freelife@yahoo.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE PdMCegEMgtSs )) ---------------------- 2012-07-27 05:03:34.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE hjYZEirnVekBPQA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = freelife@yahoo.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE AznRMQWrP ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Gabriel ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 491689 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE OsOg4 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = GouKoCZmiAQOmBnajKr ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = freelife@yahoo.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE PdMCegEMgtSs )) ---------------------- 2012-07-27 05:03:34.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE hjYZEirnVekBPQA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = freelife@yahoo.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE AznRMQWrP ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Gabriel ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 491689 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE OsOg4 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = GouKoCZmiAQOmBnajKr ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = freelife@yahoo.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE PdMCegEMgtSs )) ---------------------- 2012-07-27 05:03:34.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2012-07-27 05:03:34.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'hjYZEirnVekBPQA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'freelife@yahoo.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'AznRMQWrP' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Gabriel' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '491689' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'OsOg4' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'GouKoCZmiAQOmBnajKr' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'freelife@yahoo.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'PdMCegEMgtSs' ))' ---------------------- 2012-07-27 05:03:34.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "freelife@yahoo.com" ---------------------- 2012-07-27 05:03:34.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2012-07-31 19:57:41.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2012-07-31 19:57:41.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA gvrqks@cxkyjs.com USA dtsdvojixa USA 5551 le24R gvrqks@cxkyjs.com gvrqks@cxkyjs.com dtsdvojixa
### ERROR LOG The Logging Results: ---------------------- 2012-07-31 17:57:41.000 Logging started. ---------------------- 2012-07-31 17:57:41.000 BioCASe protocol used. ---------------------- 2012-07-31 17:57:41.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2012-07-31 17:57:41.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2012-07-31 17:57:41.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-07-31 17:57:41.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-07-31 17:57:41.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-07-31 19:57:41.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n gvrqks@cxkyjs.com\n USA\n dtsdvojixa\n USA\n 5551\n le24R\n gvrqks@cxkyjs.com\n gvrqks@cxkyjs.com\n dtsdvojixa\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-07-31 19:57:41.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n gvrqks@cxkyjs.com\n USA\n dtsdvojixa\n USA\n 5551\n le24R\n gvrqks@cxkyjs.com\n gvrqks@cxkyjs.com\n dtsdvojixa\n\n\n\n \n
'} ---------------------- 2012-07-31 17:57:41.000 Found online debuglevel setting: 1 ---------------------- 2012-07-31 17:57:41.000 Setting debuglevel from 0 to 1 ---------------------- 2012-07-31 17:57:41.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-07-31 17:57:42.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-07-31 17:57:42.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2012-07-31 17:57:42.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-07-31 17:57:45.000 Pickled file is of latest revision. ---------------------- 2012-07-31 17:57:45.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-07-31 17:57:45.000 Original filter string parsed:
2.4.2 2012-07-31 19:57:41.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA gvrqks@cxkyjs.com USA dtsdvojixa USA 5551 le24R gvrqks@cxkyjs.com gvrqks@cxkyjs.com dtsdvojixa
---------------------- 2012-07-31 17:57:45.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = gvrqks@cxkyjs.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE dtsdvojixa ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 5551 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE le24R ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = gvrqks@cxkyjs.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = gvrqks@cxkyjs.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE dtsdvojixa )) ---------------------- 2012-07-31 17:57:45.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = gvrqks@cxkyjs.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE dtsdvojixa ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 5551 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE le24R ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = gvrqks@cxkyjs.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = gvrqks@cxkyjs.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE dtsdvojixa )) ---------------------- 2012-07-31 17:57:45.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = gvrqks@cxkyjs.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE dtsdvojixa ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 5551 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE le24R ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = gvrqks@cxkyjs.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = gvrqks@cxkyjs.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE dtsdvojixa )) ---------------------- 2012-07-31 17:57:45.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = gvrqks@cxkyjs.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE dtsdvojixa ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 5551 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE le24R ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = gvrqks@cxkyjs.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = gvrqks@cxkyjs.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE dtsdvojixa )) ---------------------- 2012-07-31 17:57:45.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2012-07-31 17:57:45.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'gvrqks@cxkyjs.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'dtsdvojixa' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '5551' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'le24R' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'gvrqks@cxkyjs.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'gvrqks@cxkyjs.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'dtsdvojixa' ))' ---------------------- 2012-07-31 17:57:46.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "gvrqks@cxkyjs.com" ---------------------- 2012-07-31 17:57:46.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2012-08-03 13:52:11.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2012-08-03 11:52:11.000 Logging started. ---------------------- 2012-08-03 11:52:11.000 BioCASe protocol used. ---------------------- 2012-08-03 11:52:11.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2012-08-03 11:52:11.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2012-08-03 11:52:11.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-08-03 11:52:11.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2012-08-03 11:52:11.000 Unknown request type! Default to capabilities. ---------------------- 2012-08-03 11:52:11.000 Destination hostname could not be determined ---------------------- 2012-08-03 11:52:11.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2012-08-03 11:52:11.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-08-03 11:52:12.000 Pickled file is of latest revision. ---------------------- 2012-08-03 11:52:12.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2012-08-03 11:52:12.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2012-08-03 11:52:12.000 Reset CMF convenience cache data hash. ---------------------- 2012-08-03 11:52:12.000 Loading CMF from the source XML file. ---------------------- 2012-08-03 11:52:12.000 CMF Version 2.1 detected. ---------------------- 2012-08-03 11:52:12.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2012-08-03 11:52:12.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2012-08-03 11:52:12.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-08-03 11:52:12.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-08-03 11:52:12.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2012-08-06 21:27:25.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2012-08-06 19:27:25.000 Logging started. ---------------------- 2012-08-06 19:27:25.000 BioCASe protocol used. ---------------------- 2012-08-06 19:27:25.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2012-08-06 19:27:25.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2012-08-06 19:27:25.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-08-06 19:27:25.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2012-08-06 19:27:25.000 Unknown request type! Default to capabilities. ---------------------- 2012-08-06 19:27:25.000 Destination hostname could not be determined ---------------------- 2012-08-06 19:27:25.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2012-08-06 19:27:25.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-08-06 19:27:25.000 Pickled file is of latest revision. ---------------------- 2012-08-06 19:27:25.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2012-08-06 19:27:25.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2012-08-06 19:27:25.000 Reset CMF convenience cache data hash. ---------------------- 2012-08-06 19:27:25.000 Loading CMF from the source XML file. ---------------------- 2012-08-06 19:27:25.000 CMF Version 2.1 detected. ---------------------- 2012-08-06 19:27:25.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2012-08-06 19:27:25.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2012-08-06 19:27:25.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-08-06 19:27:25.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-08-06 19:27:25.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2012-08-06 21:29:32.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2012-08-06 19:29:32.000 Logging started. ---------------------- 2012-08-06 19:29:32.000 BioCASe protocol used. ---------------------- 2012-08-06 19:29:32.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2012-08-06 19:29:32.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2012-08-06 19:29:32.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-08-06 19:29:32.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2012-08-06 19:29:32.000 Unknown request type! Default to capabilities. ---------------------- 2012-08-06 19:29:32.000 Destination hostname could not be determined ---------------------- 2012-08-06 19:29:32.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2012-08-06 19:29:32.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-08-06 19:29:32.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-08-06 19:29:32.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2012-08-06 19:29:32.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-08-06 19:29:32.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-08-06 19:29:32.000 Setting debuglevel from 0 to 3 **************************************** JOCLWLXKF **************************************** ### ERROR TIME 2012-08-08 13:31:08.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to joclwlxkf no request doc set. ### ERROR LOG The Logging Results: ---------------------- 2012-08-08 11:31:08.000 Logging started. ---------------------- 2012-08-08 11:31:08.000 BioCASe protocol used. ---------------------- 2012-08-08 11:31:08.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['joclwlxkf']} ---------------------- 2012-08-08 11:31:08.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/joclwlxkf/provider_setup_file.xml ---------------------- 2012-08-08 11:31:08.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-08-08 11:31:08.000 PRG_PSF_PARSING_ERROR: The Provider Configuration could not be parsed. Please check if "UNKNOWN" is accesible and a valid XML document. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 114, in readConfigFiles self.psfObj.readPSFile() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 104, in readPSFile parse(absFilename, handler) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/__init__.py", line 31, in parse parser.parse(filename_or_stream) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 103, in parse source = saxutils.prepare_input_source(source) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/saxutils.py", line 523, in prepare_input_source f = urllib2.urlopen(source.getSystemId()) File "/usr/lib/python2.4/urllib2.py", line 130, in urlopen return _opener.open(url, data) File "/usr/lib/python2.4/urllib2.py", line 350, in open protocol = req.get_type() File "/usr/lib/python2.4/urllib2.py", line 233, in get_type raise ValueError, "unknown url type: %s" % self.__original ValueError: unknown url type: /var/www/BiocaseProvider_2.4.2/configuration/datasources/joclwlxkf/provider_setup_file.xml ---------------------- 2012-08-08 11:31:08.000 Serious PyWrapper instance crash Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/www/pywrapper.cgi", line 49, in ? pywInstance.readConfigFiles( PSFPath=PSFPath, logDir=logDir) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 118, in readConfigFiles raise ProviderSetupParseError("UNKNOWN", self.logObj) ProviderSetupParseError: ---------------------- 2012-08-08 11:31:08.000 PyWrapper instance is missing its configurations! ---------------------- 2012-08-08 11:31:08.000 Setting debuglevel from 0 to 3 **************************************** JOCLWLXKF **************************************** ### ERROR TIME 2012-08-08 13:50:47.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to joclwlxkf no request doc set. ### ERROR LOG The Logging Results: ---------------------- 2012-08-08 11:50:47.000 Logging started. ---------------------- 2012-08-08 11:50:47.000 BioCASe protocol used. ---------------------- 2012-08-08 11:50:47.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['joclwlxkf']} ---------------------- 2012-08-08 11:50:47.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/joclwlxkf/provider_setup_file.xml ---------------------- 2012-08-08 11:50:47.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-08-08 11:50:47.000 PRG_PSF_PARSING_ERROR: The Provider Configuration could not be parsed. Please check if "UNKNOWN" is accesible and a valid XML document. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 114, in readConfigFiles self.psfObj.readPSFile() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 104, in readPSFile parse(absFilename, handler) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/__init__.py", line 31, in parse parser.parse(filename_or_stream) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 103, in parse source = saxutils.prepare_input_source(source) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/saxutils.py", line 523, in prepare_input_source f = urllib2.urlopen(source.getSystemId()) File "/usr/lib/python2.4/urllib2.py", line 130, in urlopen return _opener.open(url, data) File "/usr/lib/python2.4/urllib2.py", line 350, in open protocol = req.get_type() File "/usr/lib/python2.4/urllib2.py", line 233, in get_type raise ValueError, "unknown url type: %s" % self.__original ValueError: unknown url type: /var/www/BiocaseProvider_2.4.2/configuration/datasources/joclwlxkf/provider_setup_file.xml ---------------------- 2012-08-08 11:50:47.000 Serious PyWrapper instance crash Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/www/pywrapper.cgi", line 49, in ? pywInstance.readConfigFiles( PSFPath=PSFPath, logDir=logDir) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 118, in readConfigFiles raise ProviderSetupParseError("UNKNOWN", self.logObj) ProviderSetupParseError: ---------------------- 2012-08-08 11:50:47.000 PyWrapper instance is missing its configurations! ---------------------- 2012-08-08 11:50:47.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2012-08-09 14:09:34.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2012-08-09 12:09:34.000 Logging started. ---------------------- 2012-08-09 12:09:34.000 BioCASe protocol used. ---------------------- 2012-08-09 12:09:34.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2012-08-09 12:09:34.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2012-08-09 12:09:34.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-08-09 12:09:34.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2012-08-09 12:09:34.000 Unknown request type! Default to capabilities. ---------------------- 2012-08-09 12:09:34.000 Destination hostname could not be determined ---------------------- 2012-08-09 12:09:34.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2012-08-09 12:09:34.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-08-09 12:09:34.000 Pickled file is of latest revision. ---------------------- 2012-08-09 12:09:34.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2012-08-09 12:09:34.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2012-08-09 12:09:34.000 Reset CMF convenience cache data hash. ---------------------- 2012-08-09 12:09:34.000 Loading CMF from the source XML file. ---------------------- 2012-08-09 12:09:34.000 CMF Version 2.1 detected. ---------------------- 2012-08-09 12:09:35.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2012-08-09 12:09:35.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2012-08-09 12:09:35.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-08-09 12:09:35.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-08-09 12:09:35.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2012-08-09 15:43:04.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2012-08-09 15:43:03.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString ydxjYzqxpBRnp sdfvswere@gmail.com qlVVzKUCZQI TriadMarket USA 809938 T6qcO8 twApTBNehSnAYRDiy sdfvswere@gmail.com jRhbwXDzBhuZwCXhj
### ERROR LOG The Logging Results: ---------------------- 2012-08-09 13:43:04.000 Logging started. ---------------------- 2012-08-09 13:43:04.000 BioCASe protocol used. ---------------------- 2012-08-09 13:43:04.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2012-08-09 13:43:04.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2012-08-09 13:43:04.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-08-09 13:43:04.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-08-09 13:43:04.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-08-09 15:43:03.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n ydxjYzqxpBRnp\n sdfvswere@gmail.com\n qlVVzKUCZQI\n TriadMarket\n USA\n 809938\n T6qcO8\n twApTBNehSnAYRDiy\n sdfvswere@gmail.com\n jRhbwXDzBhuZwCXhj\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-08-09 15:43:03.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n ydxjYzqxpBRnp\n sdfvswere@gmail.com\n qlVVzKUCZQI\n TriadMarket\n USA\n 809938\n T6qcO8\n twApTBNehSnAYRDiy\n sdfvswere@gmail.com\n jRhbwXDzBhuZwCXhj\n\n\n\n \n
'} ---------------------- 2012-08-09 13:43:04.000 Found online debuglevel setting: 1 ---------------------- 2012-08-09 13:43:04.000 Setting debuglevel from 0 to 1 ---------------------- 2012-08-09 13:43:04.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-08-09 13:43:05.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-08-09 13:43:05.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2012-08-09 13:43:05.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-08-09 13:43:09.000 Pickled file is of latest revision. ---------------------- 2012-08-09 13:43:09.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-08-09 13:43:09.000 Original filter string parsed:
2.4.2 2012-08-09 15:43:03.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString ydxjYzqxpBRnp sdfvswere@gmail.com qlVVzKUCZQI TriadMarket USA 809938 T6qcO8 twApTBNehSnAYRDiy sdfvswere@gmail.com jRhbwXDzBhuZwCXhj
---------------------- 2012-08-09 13:43:09.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE ydxjYzqxpBRnp ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = sdfvswere@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE qlVVzKUCZQI ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE TriadMarket ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 809938 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE T6qcO8 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = twApTBNehSnAYRDiy ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = sdfvswere@gmail.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jRhbwXDzBhuZwCXhj )) ---------------------- 2012-08-09 13:43:09.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE ydxjYzqxpBRnp ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = sdfvswere@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE qlVVzKUCZQI ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE TriadMarket ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 809938 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE T6qcO8 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = twApTBNehSnAYRDiy ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = sdfvswere@gmail.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jRhbwXDzBhuZwCXhj )) ---------------------- 2012-08-09 13:43:09.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE ydxjYzqxpBRnp ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = sdfvswere@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE qlVVzKUCZQI ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE TriadMarket ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 809938 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE T6qcO8 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = twApTBNehSnAYRDiy ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = sdfvswere@gmail.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jRhbwXDzBhuZwCXhj )) ---------------------- 2012-08-09 13:43:09.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE ydxjYzqxpBRnp ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = sdfvswere@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE qlVVzKUCZQI ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE TriadMarket ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 809938 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE T6qcO8 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = twApTBNehSnAYRDiy ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = sdfvswere@gmail.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jRhbwXDzBhuZwCXhj )) ---------------------- 2012-08-09 13:43:09.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2012-08-09 13:43:09.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'ydxjYzqxpBRnp' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'sdfvswere@gmail.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'qlVVzKUCZQI' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'TriadMarket' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '809938' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'T6qcO8' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'twApTBNehSnAYRDiy' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'sdfvswere@gmail.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'jRhbwXDzBhuZwCXhj' ))' ---------------------- 2012-08-09 13:43:09.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "sdfvswere@gmail.com" ---------------------- 2012-08-09 13:43:09.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2012-08-16 12:30:51.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2012-08-16 10:30:51.000 Logging started. ---------------------- 2012-08-16 10:30:51.000 BioCASe protocol used. ---------------------- 2012-08-16 10:30:51.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2012-08-16 10:30:51.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2012-08-16 10:30:51.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-08-16 10:30:51.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2012-08-16 10:30:51.000 Unknown request type! Default to capabilities. ---------------------- 2012-08-16 10:30:51.000 Destination hostname could not be determined ---------------------- 2012-08-16 10:30:51.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2012-08-16 10:30:51.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2012-08-16 10:30:51.000 Reset CMF convenience cache data hash. ---------------------- 2012-08-16 10:30:51.000 Loading CMF from the source XML file. ---------------------- 2012-08-16 10:30:51.000 CMF Version 2.1 detected. ---------------------- 2012-08-16 10:30:51.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2012-08-16 10:30:51.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2012-08-16 10:30:51.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-08-16 10:30:51.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-08-16 10:30:51.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2012-08-16 10:30:51.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2012-08-16 10:30:51.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-08-16 10:30:51.000 Setting debuglevel from 0 to 3 **************************************** RMCAAMPHIBIANS **************************************** ### ERROR TIME 2012-08-17 05:18:15.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCAAmphibians no request doc set. ### ERROR LOG The Logging Results: ---------------------- 2012-08-17 03:18:15.000 Logging started. ---------------------- 2012-08-17 03:18:15.000 BioCASe protocol used. ---------------------- 2012-08-17 03:18:15.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCAAmphibians']} ---------------------- 2012-08-17 03:18:15.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCAAmphibians/provider_setup_file.xml ---------------------- 2012-08-17 03:18:15.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-08-17 03:18:15.000 PRG_PSF_PARSING_ERROR: The Provider Configuration could not be parsed. Please check if "UNKNOWN" is accesible and a valid XML document. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 114, in readConfigFiles self.psfObj.readPSFile() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 104, in readPSFile parse(absFilename, handler) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/__init__.py", line 31, in parse parser.parse(filename_or_stream) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 103, in parse source = saxutils.prepare_input_source(source) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/saxutils.py", line 523, in prepare_input_source f = urllib2.urlopen(source.getSystemId()) File "/usr/lib/python2.4/urllib2.py", line 130, in urlopen return _opener.open(url, data) File "/usr/lib/python2.4/urllib2.py", line 350, in open protocol = req.get_type() File "/usr/lib/python2.4/urllib2.py", line 233, in get_type raise ValueError, "unknown url type: %s" % self.__original ValueError: unknown url type: /var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCAAmphibians/provider_setup_file.xml ---------------------- 2012-08-17 03:18:15.000 Serious PyWrapper instance crash Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/www/pywrapper.cgi", line 49, in ? pywInstance.readConfigFiles( PSFPath=PSFPath, logDir=logDir) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 118, in readConfigFiles raise ProviderSetupParseError("UNKNOWN", self.logObj) ProviderSetupParseError: ---------------------- 2012-08-17 03:18:15.000 PyWrapper instance is missing its configurations! ---------------------- 2012-08-17 03:18:15.000 Setting debuglevel from 0 to 3 **************************************** RMCAAMPHIBIANS **************************************** ### ERROR TIME 2012-08-18 12:51:20.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCAAmphibians no request doc set. ### ERROR LOG The Logging Results: ---------------------- 2012-08-18 10:51:20.000 Logging started. ---------------------- 2012-08-18 10:51:20.000 BioCASe protocol used. ---------------------- 2012-08-18 10:51:20.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCAAmphibians']} ---------------------- 2012-08-18 10:51:20.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCAAmphibians/provider_setup_file.xml ---------------------- 2012-08-18 10:51:20.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-08-18 10:51:20.000 PRG_PSF_PARSING_ERROR: The Provider Configuration could not be parsed. Please check if "UNKNOWN" is accesible and a valid XML document. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 114, in readConfigFiles self.psfObj.readPSFile() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 104, in readPSFile parse(absFilename, handler) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/__init__.py", line 31, in parse parser.parse(filename_or_stream) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 103, in parse source = saxutils.prepare_input_source(source) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/saxutils.py", line 523, in prepare_input_source f = urllib2.urlopen(source.getSystemId()) File "/usr/lib/python2.4/urllib2.py", line 130, in urlopen return _opener.open(url, data) File "/usr/lib/python2.4/urllib2.py", line 350, in open protocol = req.get_type() File "/usr/lib/python2.4/urllib2.py", line 233, in get_type raise ValueError, "unknown url type: %s" % self.__original ValueError: unknown url type: /var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCAAmphibians/provider_setup_file.xml ---------------------- 2012-08-18 10:51:20.000 Serious PyWrapper instance crash Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/www/pywrapper.cgi", line 49, in ? pywInstance.readConfigFiles( PSFPath=PSFPath, logDir=logDir) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 118, in readConfigFiles raise ProviderSetupParseError("UNKNOWN", self.logObj) ProviderSetupParseError: ---------------------- 2012-08-18 10:51:20.000 PyWrapper instance is missing its configurations! ---------------------- 2012-08-18 10:51:20.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2012-08-18 14:09:33.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2012-08-18 12:09:33.000 Logging started. ---------------------- 2012-08-18 12:09:33.000 BioCASe protocol used. ---------------------- 2012-08-18 12:09:33.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2012-08-18 12:09:33.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2012-08-18 12:09:33.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-08-18 12:09:33.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2012-08-18 12:09:33.000 Unknown request type! Default to capabilities. ---------------------- 2012-08-18 12:09:33.000 Destination hostname could not be determined ---------------------- 2012-08-18 12:09:33.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2012-08-18 12:09:33.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-08-18 12:09:33.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-08-18 12:09:33.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2012-08-18 12:09:33.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-08-18 12:09:33.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-08-18 12:09:33.000 Setting debuglevel from 0 to 3 **************************************** RMCAAMPHIBIANS **************************************** ### ERROR TIME 2012-08-19 05:27:30.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCAAmphibians no request doc set. ### ERROR LOG The Logging Results: ---------------------- 2012-08-19 03:27:30.000 Logging started. ---------------------- 2012-08-19 03:27:30.000 BioCASe protocol used. ---------------------- 2012-08-19 03:27:30.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCAAmphibians']} ---------------------- 2012-08-19 03:27:30.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCAAmphibians/provider_setup_file.xml ---------------------- 2012-08-19 03:27:30.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-08-19 03:27:30.000 PRG_PSF_PARSING_ERROR: The Provider Configuration could not be parsed. Please check if "UNKNOWN" is accesible and a valid XML document. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 114, in readConfigFiles self.psfObj.readPSFile() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 104, in readPSFile parse(absFilename, handler) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/__init__.py", line 31, in parse parser.parse(filename_or_stream) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 103, in parse source = saxutils.prepare_input_source(source) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/saxutils.py", line 523, in prepare_input_source f = urllib2.urlopen(source.getSystemId()) File "/usr/lib/python2.4/urllib2.py", line 130, in urlopen return _opener.open(url, data) File "/usr/lib/python2.4/urllib2.py", line 350, in open protocol = req.get_type() File "/usr/lib/python2.4/urllib2.py", line 233, in get_type raise ValueError, "unknown url type: %s" % self.__original ValueError: unknown url type: /var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCAAmphibians/provider_setup_file.xml ---------------------- 2012-08-19 03:27:30.000 Serious PyWrapper instance crash Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/www/pywrapper.cgi", line 49, in ? pywInstance.readConfigFiles( PSFPath=PSFPath, logDir=logDir) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 118, in readConfigFiles raise ProviderSetupParseError("UNKNOWN", self.logObj) ProviderSetupParseError: ---------------------- 2012-08-19 03:27:30.000 PyWrapper instance is missing its configurations! ---------------------- 2012-08-19 03:27:30.000 Setting debuglevel from 0 to 3 **************************************** RMCAAMPHIBIANS **************************************** ### ERROR TIME 2012-08-20 21:14:41.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCAAmphibians no request doc set. ### ERROR LOG The Logging Results: ---------------------- 2012-08-20 19:14:41.000 Logging started. ---------------------- 2012-08-20 19:14:41.000 BioCASe protocol used. ---------------------- 2012-08-20 19:14:41.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCAAmphibians']} ---------------------- 2012-08-20 19:14:41.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCAAmphibians/provider_setup_file.xml ---------------------- 2012-08-20 19:14:41.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-08-20 19:14:41.000 PRG_PSF_PARSING_ERROR: The Provider Configuration could not be parsed. Please check if "UNKNOWN" is accesible and a valid XML document. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 114, in readConfigFiles self.psfObj.readPSFile() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 104, in readPSFile parse(absFilename, handler) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/__init__.py", line 31, in parse parser.parse(filename_or_stream) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 103, in parse source = saxutils.prepare_input_source(source) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/saxutils.py", line 523, in prepare_input_source f = urllib2.urlopen(source.getSystemId()) File "/usr/lib/python2.4/urllib2.py", line 130, in urlopen return _opener.open(url, data) File "/usr/lib/python2.4/urllib2.py", line 350, in open protocol = req.get_type() File "/usr/lib/python2.4/urllib2.py", line 233, in get_type raise ValueError, "unknown url type: %s" % self.__original ValueError: unknown url type: /var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCAAmphibians/provider_setup_file.xml ---------------------- 2012-08-20 19:14:41.000 Serious PyWrapper instance crash Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/www/pywrapper.cgi", line 49, in ? pywInstance.readConfigFiles( PSFPath=PSFPath, logDir=logDir) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 118, in readConfigFiles raise ProviderSetupParseError("UNKNOWN", self.logObj) ProviderSetupParseError: ---------------------- 2012-08-20 19:14:41.000 PyWrapper instance is missing its configurations! ---------------------- 2012-08-20 19:14:41.000 Setting debuglevel from 0 to 3 **************************************** XPBDDZEYJW **************************************** ### ERROR TIME 2012-08-21 14:11:20.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to xpbddzeyjw no request doc set. ### ERROR LOG The Logging Results: ---------------------- 2012-08-21 12:11:20.000 Logging started. ---------------------- 2012-08-21 12:11:20.000 BioCASe protocol used. ---------------------- 2012-08-21 12:11:20.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['xpbddzeyjw']} ---------------------- 2012-08-21 12:11:20.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/xpbddzeyjw/provider_setup_file.xml ---------------------- 2012-08-21 12:11:20.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-08-21 12:11:20.000 PRG_PSF_PARSING_ERROR: The Provider Configuration could not be parsed. Please check if "UNKNOWN" is accesible and a valid XML document. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 114, in readConfigFiles self.psfObj.readPSFile() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 104, in readPSFile parse(absFilename, handler) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/__init__.py", line 31, in parse parser.parse(filename_or_stream) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 103, in parse source = saxutils.prepare_input_source(source) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/saxutils.py", line 523, in prepare_input_source f = urllib2.urlopen(source.getSystemId()) File "/usr/lib/python2.4/urllib2.py", line 130, in urlopen return _opener.open(url, data) File "/usr/lib/python2.4/urllib2.py", line 350, in open protocol = req.get_type() File "/usr/lib/python2.4/urllib2.py", line 233, in get_type raise ValueError, "unknown url type: %s" % self.__original ValueError: unknown url type: /var/www/BiocaseProvider_2.4.2/configuration/datasources/xpbddzeyjw/provider_setup_file.xml ---------------------- 2012-08-21 12:11:20.000 Serious PyWrapper instance crash Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/www/pywrapper.cgi", line 49, in ? pywInstance.readConfigFiles( PSFPath=PSFPath, logDir=logDir) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 118, in readConfigFiles raise ProviderSetupParseError("UNKNOWN", self.logObj) ProviderSetupParseError: ---------------------- 2012-08-21 12:11:20.000 PyWrapper instance is missing its configurations! ---------------------- 2012-08-21 12:11:20.000 Setting debuglevel from 0 to 3 **************************************** XPBDDZEYJW **************************************** ### ERROR TIME 2012-08-21 14:11:21.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to xpbddzeyjw no request doc set. ### ERROR LOG The Logging Results: ---------------------- 2012-08-21 12:11:21.000 Logging started. ---------------------- 2012-08-21 12:11:21.000 BioCASe protocol used. ---------------------- 2012-08-21 12:11:21.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['xpbddzeyjw']} ---------------------- 2012-08-21 12:11:21.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/xpbddzeyjw/provider_setup_file.xml ---------------------- 2012-08-21 12:11:21.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-08-21 12:11:21.000 PRG_PSF_PARSING_ERROR: The Provider Configuration could not be parsed. Please check if "UNKNOWN" is accesible and a valid XML document. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 114, in readConfigFiles self.psfObj.readPSFile() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 104, in readPSFile parse(absFilename, handler) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/__init__.py", line 31, in parse parser.parse(filename_or_stream) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 103, in parse source = saxutils.prepare_input_source(source) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/saxutils.py", line 523, in prepare_input_source f = urllib2.urlopen(source.getSystemId()) File "/usr/lib/python2.4/urllib2.py", line 130, in urlopen return _opener.open(url, data) File "/usr/lib/python2.4/urllib2.py", line 350, in open protocol = req.get_type() File "/usr/lib/python2.4/urllib2.py", line 233, in get_type raise ValueError, "unknown url type: %s" % self.__original ValueError: unknown url type: /var/www/BiocaseProvider_2.4.2/configuration/datasources/xpbddzeyjw/provider_setup_file.xml ---------------------- 2012-08-21 12:11:21.000 Serious PyWrapper instance crash Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/www/pywrapper.cgi", line 49, in ? pywInstance.readConfigFiles( PSFPath=PSFPath, logDir=logDir) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 118, in readConfigFiles raise ProviderSetupParseError("UNKNOWN", self.logObj) ProviderSetupParseError: ---------------------- 2012-08-21 12:11:21.000 PyWrapper instance is missing its configurations! ---------------------- 2012-08-21 12:11:21.000 Setting debuglevel from 0 to 3 **************************************** RMCAAMPHIBIANS **************************************** ### ERROR TIME 2012-08-22 00:28:25.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCAAmphibians no request doc set. ### ERROR LOG The Logging Results: ---------------------- 2012-08-21 22:28:25.000 Logging started. ---------------------- 2012-08-21 22:28:25.000 BioCASe protocol used. ---------------------- 2012-08-21 22:28:25.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCAAmphibians']} ---------------------- 2012-08-21 22:28:25.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCAAmphibians/provider_setup_file.xml ---------------------- 2012-08-21 22:28:25.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-08-21 22:28:25.000 PRG_PSF_PARSING_ERROR: The Provider Configuration could not be parsed. Please check if "UNKNOWN" is accesible and a valid XML document. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 114, in readConfigFiles self.psfObj.readPSFile() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 104, in readPSFile parse(absFilename, handler) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/__init__.py", line 31, in parse parser.parse(filename_or_stream) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 103, in parse source = saxutils.prepare_input_source(source) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/saxutils.py", line 523, in prepare_input_source f = urllib2.urlopen(source.getSystemId()) File "/usr/lib/python2.4/urllib2.py", line 130, in urlopen return _opener.open(url, data) File "/usr/lib/python2.4/urllib2.py", line 350, in open protocol = req.get_type() File "/usr/lib/python2.4/urllib2.py", line 233, in get_type raise ValueError, "unknown url type: %s" % self.__original ValueError: unknown url type: /var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCAAmphibians/provider_setup_file.xml ---------------------- 2012-08-21 22:28:25.000 Serious PyWrapper instance crash Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/www/pywrapper.cgi", line 49, in ? pywInstance.readConfigFiles( PSFPath=PSFPath, logDir=logDir) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 118, in readConfigFiles raise ProviderSetupParseError("UNKNOWN", self.logObj) ProviderSetupParseError: ---------------------- 2012-08-21 22:28:25.000 PyWrapper instance is missing its configurations! ---------------------- 2012-08-21 22:28:25.000 Setting debuglevel from 0 to 3 **************************************** QRHMLDSMWMP **************************************** ### ERROR TIME 2012-08-22 23:27:39.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to qrhmldsmwmp no request doc set. ### ERROR LOG The Logging Results: ---------------------- 2012-08-22 21:27:39.000 Logging started. ---------------------- 2012-08-22 21:27:39.000 BioCASe protocol used. ---------------------- 2012-08-22 21:27:39.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['qrhmldsmwmp']} ---------------------- 2012-08-22 21:27:39.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/qrhmldsmwmp/provider_setup_file.xml ---------------------- 2012-08-22 21:27:39.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-08-22 21:27:39.000 PRG_PSF_PARSING_ERROR: The Provider Configuration could not be parsed. Please check if "UNKNOWN" is accesible and a valid XML document. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 114, in readConfigFiles self.psfObj.readPSFile() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 104, in readPSFile parse(absFilename, handler) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/__init__.py", line 31, in parse parser.parse(filename_or_stream) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 103, in parse source = saxutils.prepare_input_source(source) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/saxutils.py", line 523, in prepare_input_source f = urllib2.urlopen(source.getSystemId()) File "/usr/lib/python2.4/urllib2.py", line 130, in urlopen return _opener.open(url, data) File "/usr/lib/python2.4/urllib2.py", line 350, in open protocol = req.get_type() File "/usr/lib/python2.4/urllib2.py", line 233, in get_type raise ValueError, "unknown url type: %s" % self.__original ValueError: unknown url type: /var/www/BiocaseProvider_2.4.2/configuration/datasources/qrhmldsmwmp/provider_setup_file.xml ---------------------- 2012-08-22 21:27:39.000 Serious PyWrapper instance crash Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/www/pywrapper.cgi", line 49, in ? pywInstance.readConfigFiles( PSFPath=PSFPath, logDir=logDir) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 118, in readConfigFiles raise ProviderSetupParseError("UNKNOWN", self.logObj) ProviderSetupParseError: ---------------------- 2012-08-22 21:27:39.000 PyWrapper instance is missing its configurations! ---------------------- 2012-08-22 21:27:39.000 Setting debuglevel from 0 to 3 **************************************** QRHMLDSMWMP **************************************** ### ERROR TIME 2012-08-22 23:27:40.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to qrhmldsmwmp no request doc set. ### ERROR LOG The Logging Results: ---------------------- 2012-08-22 21:27:40.000 Logging started. ---------------------- 2012-08-22 21:27:40.000 BioCASe protocol used. ---------------------- 2012-08-22 21:27:40.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['qrhmldsmwmp']} ---------------------- 2012-08-22 21:27:40.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/qrhmldsmwmp/provider_setup_file.xml ---------------------- 2012-08-22 21:27:40.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-08-22 21:27:40.000 PRG_PSF_PARSING_ERROR: The Provider Configuration could not be parsed. Please check if "UNKNOWN" is accesible and a valid XML document. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 114, in readConfigFiles self.psfObj.readPSFile() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 104, in readPSFile parse(absFilename, handler) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/__init__.py", line 31, in parse parser.parse(filename_or_stream) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 103, in parse source = saxutils.prepare_input_source(source) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/saxutils.py", line 523, in prepare_input_source f = urllib2.urlopen(source.getSystemId()) File "/usr/lib/python2.4/urllib2.py", line 130, in urlopen return _opener.open(url, data) File "/usr/lib/python2.4/urllib2.py", line 350, in open protocol = req.get_type() File "/usr/lib/python2.4/urllib2.py", line 233, in get_type raise ValueError, "unknown url type: %s" % self.__original ValueError: unknown url type: /var/www/BiocaseProvider_2.4.2/configuration/datasources/qrhmldsmwmp/provider_setup_file.xml ---------------------- 2012-08-22 21:27:40.000 Serious PyWrapper instance crash Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/www/pywrapper.cgi", line 49, in ? pywInstance.readConfigFiles( PSFPath=PSFPath, logDir=logDir) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 118, in readConfigFiles raise ProviderSetupParseError("UNKNOWN", self.logObj) ProviderSetupParseError: ---------------------- 2012-08-22 21:27:40.000 PyWrapper instance is missing its configurations! ---------------------- 2012-08-22 21:27:40.000 Setting debuglevel from 0 to 3 **************************************** EJKBXFMJQL **************************************** ### ERROR TIME 2012-08-25 17:49:51.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to ejkbxfmjql no request doc set. ### ERROR LOG The Logging Results: ---------------------- 2012-08-25 15:49:51.000 Logging started. ---------------------- 2012-08-25 15:49:51.000 BioCASe protocol used. ---------------------- 2012-08-25 15:49:51.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['ejkbxfmjql']} ---------------------- 2012-08-25 15:49:51.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/ejkbxfmjql/provider_setup_file.xml ---------------------- 2012-08-25 15:49:51.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-08-25 15:49:51.000 PRG_PSF_PARSING_ERROR: The Provider Configuration could not be parsed. Please check if "UNKNOWN" is accesible and a valid XML document. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 114, in readConfigFiles self.psfObj.readPSFile() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 104, in readPSFile parse(absFilename, handler) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/__init__.py", line 31, in parse parser.parse(filename_or_stream) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 103, in parse source = saxutils.prepare_input_source(source) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/saxutils.py", line 523, in prepare_input_source f = urllib2.urlopen(source.getSystemId()) File "/usr/lib/python2.4/urllib2.py", line 130, in urlopen return _opener.open(url, data) File "/usr/lib/python2.4/urllib2.py", line 350, in open protocol = req.get_type() File "/usr/lib/python2.4/urllib2.py", line 233, in get_type raise ValueError, "unknown url type: %s" % self.__original ValueError: unknown url type: /var/www/BiocaseProvider_2.4.2/configuration/datasources/ejkbxfmjql/provider_setup_file.xml ---------------------- 2012-08-25 15:49:51.000 Serious PyWrapper instance crash Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/www/pywrapper.cgi", line 49, in ? pywInstance.readConfigFiles( PSFPath=PSFPath, logDir=logDir) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 118, in readConfigFiles raise ProviderSetupParseError("UNKNOWN", self.logObj) ProviderSetupParseError: ---------------------- 2012-08-25 15:49:51.000 PyWrapper instance is missing its configurations! ---------------------- 2012-08-25 15:49:51.000 Setting debuglevel from 0 to 3 **************************************** EJKBXFMJQL **************************************** ### ERROR TIME 2012-08-25 17:55:35.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to ejkbxfmjql no request doc set. ### ERROR LOG The Logging Results: ---------------------- 2012-08-25 15:55:35.000 Logging started. ---------------------- 2012-08-25 15:55:35.000 BioCASe protocol used. ---------------------- 2012-08-25 15:55:35.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['ejkbxfmjql']} ---------------------- 2012-08-25 15:55:35.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/ejkbxfmjql/provider_setup_file.xml ---------------------- 2012-08-25 15:55:35.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-08-25 15:55:35.000 PRG_PSF_PARSING_ERROR: The Provider Configuration could not be parsed. Please check if "UNKNOWN" is accesible and a valid XML document. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 114, in readConfigFiles self.psfObj.readPSFile() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 104, in readPSFile parse(absFilename, handler) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/__init__.py", line 31, in parse parser.parse(filename_or_stream) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 103, in parse source = saxutils.prepare_input_source(source) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/saxutils.py", line 523, in prepare_input_source f = urllib2.urlopen(source.getSystemId()) File "/usr/lib/python2.4/urllib2.py", line 130, in urlopen return _opener.open(url, data) File "/usr/lib/python2.4/urllib2.py", line 350, in open protocol = req.get_type() File "/usr/lib/python2.4/urllib2.py", line 233, in get_type raise ValueError, "unknown url type: %s" % self.__original ValueError: unknown url type: /var/www/BiocaseProvider_2.4.2/configuration/datasources/ejkbxfmjql/provider_setup_file.xml ---------------------- 2012-08-25 15:55:35.000 Serious PyWrapper instance crash Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/www/pywrapper.cgi", line 49, in ? pywInstance.readConfigFiles( PSFPath=PSFPath, logDir=logDir) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 118, in readConfigFiles raise ProviderSetupParseError("UNKNOWN", self.logObj) ProviderSetupParseError: ---------------------- 2012-08-25 15:55:35.000 PyWrapper instance is missing its configurations! ---------------------- 2012-08-25 15:55:35.000 Setting debuglevel from 0 to 3 **************************************** TQAODESYC **************************************** ### ERROR TIME 2012-08-27 03:36:30.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to tqaodesyc no request doc set. ### ERROR LOG The Logging Results: ---------------------- 2012-08-27 01:36:30.000 Logging started. ---------------------- 2012-08-27 01:36:30.000 BioCASe protocol used. ---------------------- 2012-08-27 01:36:30.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['tqaodesyc']} ---------------------- 2012-08-27 01:36:30.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/tqaodesyc/provider_setup_file.xml ---------------------- 2012-08-27 01:36:30.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-08-27 01:36:30.000 PRG_PSF_PARSING_ERROR: The Provider Configuration could not be parsed. Please check if "UNKNOWN" is accesible and a valid XML document. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 114, in readConfigFiles self.psfObj.readPSFile() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 104, in readPSFile parse(absFilename, handler) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/__init__.py", line 31, in parse parser.parse(filename_or_stream) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 103, in parse source = saxutils.prepare_input_source(source) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/saxutils.py", line 523, in prepare_input_source f = urllib2.urlopen(source.getSystemId()) File "/usr/lib/python2.4/urllib2.py", line 130, in urlopen return _opener.open(url, data) File "/usr/lib/python2.4/urllib2.py", line 350, in open protocol = req.get_type() File "/usr/lib/python2.4/urllib2.py", line 233, in get_type raise ValueError, "unknown url type: %s" % self.__original ValueError: unknown url type: /var/www/BiocaseProvider_2.4.2/configuration/datasources/tqaodesyc/provider_setup_file.xml ---------------------- 2012-08-27 01:36:30.000 Serious PyWrapper instance crash Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/www/pywrapper.cgi", line 49, in ? pywInstance.readConfigFiles( PSFPath=PSFPath, logDir=logDir) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 118, in readConfigFiles raise ProviderSetupParseError("UNKNOWN", self.logObj) ProviderSetupParseError: ---------------------- 2012-08-27 01:36:30.000 PyWrapper instance is missing its configurations! ---------------------- 2012-08-27 01:36:30.000 Setting debuglevel from 0 to 3 **************************************** TQAODESYC **************************************** ### ERROR TIME 2012-08-27 03:36:31.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to tqaodesyc no request doc set. ### ERROR LOG The Logging Results: ---------------------- 2012-08-27 01:36:31.000 Logging started. ---------------------- 2012-08-27 01:36:31.000 BioCASe protocol used. ---------------------- 2012-08-27 01:36:31.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['tqaodesyc']} ---------------------- 2012-08-27 01:36:31.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/tqaodesyc/provider_setup_file.xml ---------------------- 2012-08-27 01:36:31.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-08-27 01:36:31.000 PRG_PSF_PARSING_ERROR: The Provider Configuration could not be parsed. Please check if "UNKNOWN" is accesible and a valid XML document. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 114, in readConfigFiles self.psfObj.readPSFile() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 104, in readPSFile parse(absFilename, handler) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/__init__.py", line 31, in parse parser.parse(filename_or_stream) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 103, in parse source = saxutils.prepare_input_source(source) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/saxutils.py", line 523, in prepare_input_source f = urllib2.urlopen(source.getSystemId()) File "/usr/lib/python2.4/urllib2.py", line 130, in urlopen return _opener.open(url, data) File "/usr/lib/python2.4/urllib2.py", line 350, in open protocol = req.get_type() File "/usr/lib/python2.4/urllib2.py", line 233, in get_type raise ValueError, "unknown url type: %s" % self.__original ValueError: unknown url type: /var/www/BiocaseProvider_2.4.2/configuration/datasources/tqaodesyc/provider_setup_file.xml ---------------------- 2012-08-27 01:36:31.000 Serious PyWrapper instance crash Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/www/pywrapper.cgi", line 49, in ? pywInstance.readConfigFiles( PSFPath=PSFPath, logDir=logDir) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 118, in readConfigFiles raise ProviderSetupParseError("UNKNOWN", self.logObj) ProviderSetupParseError: ---------------------- 2012-08-27 01:36:31.000 PyWrapper instance is missing its configurations! ---------------------- 2012-08-27 01:36:31.000 Setting debuglevel from 0 to 3 **************************************** SNQIZIHJH **************************************** ### ERROR TIME 2012-08-28 22:42:29.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to snqizihjh no request doc set. ### ERROR LOG The Logging Results: ---------------------- 2012-08-28 20:42:29.000 Logging started. ---------------------- 2012-08-28 20:42:29.000 BioCASe protocol used. ---------------------- 2012-08-28 20:42:29.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['snqizihjh']} ---------------------- 2012-08-28 20:42:29.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/snqizihjh/provider_setup_file.xml ---------------------- 2012-08-28 20:42:29.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-08-28 20:42:29.000 PRG_PSF_PARSING_ERROR: The Provider Configuration could not be parsed. Please check if "UNKNOWN" is accesible and a valid XML document. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 114, in readConfigFiles self.psfObj.readPSFile() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 104, in readPSFile parse(absFilename, handler) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/__init__.py", line 31, in parse parser.parse(filename_or_stream) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 103, in parse source = saxutils.prepare_input_source(source) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/saxutils.py", line 523, in prepare_input_source f = urllib2.urlopen(source.getSystemId()) File "/usr/lib/python2.4/urllib2.py", line 130, in urlopen return _opener.open(url, data) File "/usr/lib/python2.4/urllib2.py", line 350, in open protocol = req.get_type() File "/usr/lib/python2.4/urllib2.py", line 233, in get_type raise ValueError, "unknown url type: %s" % self.__original ValueError: unknown url type: /var/www/BiocaseProvider_2.4.2/configuration/datasources/snqizihjh/provider_setup_file.xml ---------------------- 2012-08-28 20:42:29.000 Serious PyWrapper instance crash Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/www/pywrapper.cgi", line 49, in ? pywInstance.readConfigFiles( PSFPath=PSFPath, logDir=logDir) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 118, in readConfigFiles raise ProviderSetupParseError("UNKNOWN", self.logObj) ProviderSetupParseError: ---------------------- 2012-08-28 20:42:29.000 PyWrapper instance is missing its configurations! ---------------------- 2012-08-28 20:42:29.000 Setting debuglevel from 0 to 3 **************************************** SNQIZIHJH **************************************** ### ERROR TIME 2012-08-28 22:47:29.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to snqizihjh no request doc set. ### ERROR LOG The Logging Results: ---------------------- 2012-08-28 20:47:29.000 Logging started. ---------------------- 2012-08-28 20:47:29.000 BioCASe protocol used. ---------------------- 2012-08-28 20:47:29.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['snqizihjh']} ---------------------- 2012-08-28 20:47:29.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/snqizihjh/provider_setup_file.xml ---------------------- 2012-08-28 20:47:29.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-08-28 20:47:29.000 PRG_PSF_PARSING_ERROR: The Provider Configuration could not be parsed. Please check if "UNKNOWN" is accesible and a valid XML document. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 114, in readConfigFiles self.psfObj.readPSFile() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 104, in readPSFile parse(absFilename, handler) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/__init__.py", line 31, in parse parser.parse(filename_or_stream) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 103, in parse source = saxutils.prepare_input_source(source) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/saxutils.py", line 523, in prepare_input_source f = urllib2.urlopen(source.getSystemId()) File "/usr/lib/python2.4/urllib2.py", line 130, in urlopen return _opener.open(url, data) File "/usr/lib/python2.4/urllib2.py", line 350, in open protocol = req.get_type() File "/usr/lib/python2.4/urllib2.py", line 233, in get_type raise ValueError, "unknown url type: %s" % self.__original ValueError: unknown url type: /var/www/BiocaseProvider_2.4.2/configuration/datasources/snqizihjh/provider_setup_file.xml ---------------------- 2012-08-28 20:47:29.000 Serious PyWrapper instance crash Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/www/pywrapper.cgi", line 49, in ? pywInstance.readConfigFiles( PSFPath=PSFPath, logDir=logDir) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 118, in readConfigFiles raise ProviderSetupParseError("UNKNOWN", self.logObj) ProviderSetupParseError: ---------------------- 2012-08-28 20:47:29.000 PyWrapper instance is missing its configurations! ---------------------- 2012-08-28 20:47:29.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2012-08-29 23:07:17.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2012-08-29 23:07:16.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString KqniGAlxFuA kJZPhjoNhvPYUHOtpm icDJhyyQexj bdsusgwhccm RSklbfGe zHiWWyChJfufdoCX dLxDkQQXEjcbAynozUj SklNPwGtfUydAUqt kpDiqMlEt bdsusgwhccm
### ERROR LOG The Logging Results: ---------------------- 2012-08-29 21:07:17.000 Logging started. ---------------------- 2012-08-29 21:07:17.000 BioCASe protocol used. ---------------------- 2012-08-29 21:07:17.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2012-08-29 21:07:17.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2012-08-29 21:07:17.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-08-29 21:07:17.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-08-29 21:07:17.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-08-29 23:07:16.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n KqniGAlxFuA\n kJZPhjoNhvPYUHOtpm\n icDJhyyQexj\n bdsusgwhccm\n RSklbfGe\n zHiWWyChJfufdoCX\n dLxDkQQXEjcbAynozUj\n SklNPwGtfUydAUqt\n kpDiqMlEt\n bdsusgwhccm\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-08-29 23:07:16.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n KqniGAlxFuA\n kJZPhjoNhvPYUHOtpm\n icDJhyyQexj\n bdsusgwhccm\n RSklbfGe\n zHiWWyChJfufdoCX\n dLxDkQQXEjcbAynozUj\n SklNPwGtfUydAUqt\n kpDiqMlEt\n bdsusgwhccm\n\n\n\n \n
'} ---------------------- 2012-08-29 21:07:17.000 Found online debuglevel setting: 1 ---------------------- 2012-08-29 21:07:17.000 Setting debuglevel from 0 to 1 ---------------------- 2012-08-29 21:07:17.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-08-29 21:07:19.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-08-29 21:07:19.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2012-08-29 21:07:19.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-08-29 21:07:23.000 Pickled file is of latest revision. ---------------------- 2012-08-29 21:07:23.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-08-29 21:07:23.000 Original filter string parsed:
2.4.2 2012-08-29 23:07:16.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString KqniGAlxFuA kJZPhjoNhvPYUHOtpm icDJhyyQexj bdsusgwhccm RSklbfGe zHiWWyChJfufdoCX dLxDkQQXEjcbAynozUj SklNPwGtfUydAUqt kpDiqMlEt bdsusgwhccm
---------------------- 2012-08-29 21:07:23.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE KqniGAlxFuA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = kJZPhjoNhvPYUHOtpm ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE icDJhyyQexj ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE bdsusgwhccm ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE RSklbfGe ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE zHiWWyChJfufdoCX ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE dLxDkQQXEjcbAynozUj ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = SklNPwGtfUydAUqt ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = kpDiqMlEt ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE bdsusgwhccm )) ---------------------- 2012-08-29 21:07:23.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE KqniGAlxFuA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = kJZPhjoNhvPYUHOtpm ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE icDJhyyQexj ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE bdsusgwhccm ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE RSklbfGe ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE zHiWWyChJfufdoCX ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE dLxDkQQXEjcbAynozUj ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = SklNPwGtfUydAUqt ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = kpDiqMlEt ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE bdsusgwhccm )) ---------------------- 2012-08-29 21:07:23.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE KqniGAlxFuA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = kJZPhjoNhvPYUHOtpm ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE icDJhyyQexj ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE bdsusgwhccm ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE RSklbfGe ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE zHiWWyChJfufdoCX ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE dLxDkQQXEjcbAynozUj ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = SklNPwGtfUydAUqt ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = kpDiqMlEt ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE bdsusgwhccm )) ---------------------- 2012-08-29 21:07:23.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE KqniGAlxFuA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = kJZPhjoNhvPYUHOtpm ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE icDJhyyQexj ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE bdsusgwhccm ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE RSklbfGe ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE zHiWWyChJfufdoCX ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE dLxDkQQXEjcbAynozUj ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = SklNPwGtfUydAUqt ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = kpDiqMlEt ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE bdsusgwhccm )) ---------------------- 2012-08-29 21:07:23.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2012-08-29 21:07:23.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'KqniGAlxFuA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'kJZPhjoNhvPYUHOtpm' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'icDJhyyQexj' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'bdsusgwhccm' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'RSklbfGe' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'zHiWWyChJfufdoCX' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'dLxDkQQXEjcbAynozUj' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'SklNPwGtfUydAUqt' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'kpDiqMlEt' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'bdsusgwhccm' ))' ---------------------- 2012-08-29 21:07:24.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "kJZPhjoNhvPYUHOtpm" ---------------------- 2012-08-29 21:07:24.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAZOOMIFY **************************************** ### ERROR TIME 2012-08-30 04:01:02.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaZoomify mRrwCs xdxzjykrcdje, [url=http://xoeoxhacamxe.com/]xoeoxhacamxe[/url], [link=http://fwlaipnojmiz.com/]fwlaipnojmiz[/link], http://efwpixquphmz.com/ ### ERROR LOG The Logging Results: ---------------------- 2012-08-30 02:01:02.000 Logging started. ---------------------- 2012-08-30 02:01:02.000 BioCASe protocol used. ---------------------- 2012-08-30 02:01:02.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaZoomify']} ---------------------- 2012-08-30 02:01:02.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaZoomify/provider_setup_file.xml ---------------------- 2012-08-30 02:01:02.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-08-30 02:01:02.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-08-30 02:01:02.000 All parameters found in the request: {'debug': '1', 'query': 'mRrwCs xdxzjykrcdje, [url=http://xoeoxhacamxe.com/]xoeoxhacamxe[/url], [link=http://fwlaipnojmiz.com/]fwlaipnojmiz[/link], http://efwpixquphmz.com/', 'request_string': 'mRrwCs xdxzjykrcdje, [url=http://xoeoxhacamxe.com/]xoeoxhacamxe[/url], [link=http://fwlaipnojmiz.com/]fwlaipnojmiz[/link], http://efwpixquphmz.com/'} ---------------------- 2012-08-30 02:01:02.000 Found online debuglevel setting: 1 ---------------------- 2012-08-30 02:01:02.000 Setting debuglevel from 0 to 1 ---------------------- 2012-08-30 02:01:02.000 REQ_PARSING_ERROR: The request could not be parsed. Please check if it is a valid XML document. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 87, in parseRequestString parseString(RequestString, handler) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/__init__.py", line 47, in parseString parser.parse(inpsrc) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 109, in parse xmlreader.IncrementalParser.parse(self, source) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/xmlreader.py", line 123, in parse self.feed(buffer) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 220, in feed self._err_handler.fatalError(exc) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/handler.py", line 38, in fatalError raise exception SAXParseException: :1:0: syntax error ---------------------- 2012-08-30 02:01:02.000 Serious PyWrapper instance crash Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/www/pywrapper.cgi", line 55, in ? pywInstance.setRequest() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 136, in setRequest self.protocolObj.setRequest(args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 37, in setRequest ProtocolBaseClass.setRequest(self, RequestClass, args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/base_protocol.py", line 41, in setRequest self.requestObj.setRequest(args) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 48, in setRequest self.parseRequestString(args['request_string']) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_request.py", line 89, in parseRequestString raise RequestParseError(self.logObj) RequestParseError: ---------------------- 2012-08-30 02:01:02.000 Unknown Request-type : None ---------------------- 2012-08-30 02:01:02.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2012-09-03 09:35:27.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2012-09-03 07:35:27.000 Logging started. ---------------------- 2012-09-03 07:35:27.000 BioCASe protocol used. ---------------------- 2012-09-03 07:35:27.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2012-09-03 07:35:27.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2012-09-03 07:35:27.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-09-03 07:35:27.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2012-09-03 07:35:27.000 Unknown request type! Default to capabilities. ---------------------- 2012-09-03 07:35:27.000 Destination hostname could not be determined ---------------------- 2012-09-03 07:35:27.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2012-09-03 07:35:27.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2012-09-03 07:35:27.000 Reset CMF convenience cache data hash. ---------------------- 2012-09-03 07:35:27.000 Loading CMF from the source XML file. ---------------------- 2012-09-03 07:35:27.000 CMF Version 2.1 detected. ---------------------- 2012-09-03 07:35:27.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2012-09-03 07:35:27.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2012-09-03 07:35:27.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-09-03 07:35:27.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-09-03 07:35:27.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2012-09-03 07:35:27.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2012-09-03 07:35:27.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-09-03 07:35:27.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2012-09-04 10:48:25.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2012-09-04 08:48:25.000 Logging started. ---------------------- 2012-09-04 08:48:25.000 BioCASe protocol used. ---------------------- 2012-09-04 08:48:25.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2012-09-04 08:48:25.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2012-09-04 08:48:25.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-09-04 08:48:25.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2012-09-04 08:48:25.000 Unknown request type! Default to capabilities. ---------------------- 2012-09-04 08:48:25.000 Destination hostname could not be determined ---------------------- 2012-09-04 08:48:25.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2012-09-04 08:48:25.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-09-04 08:48:25.000 Pickled file is of latest revision. ---------------------- 2012-09-04 08:48:25.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2012-09-04 08:48:25.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2012-09-04 08:48:25.000 Reset CMF convenience cache data hash. ---------------------- 2012-09-04 08:48:25.000 Loading CMF from the source XML file. ---------------------- 2012-09-04 08:48:25.000 CMF Version 2.1 detected. ---------------------- 2012-09-04 08:48:25.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2012-09-04 08:48:25.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2012-09-04 08:48:25.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-09-04 08:48:25.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-09-04 08:48:25.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2012-09-04 13:32:29.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2012-09-04 11:32:29.000 Logging started. ---------------------- 2012-09-04 11:32:29.000 BioCASe protocol used. ---------------------- 2012-09-04 11:32:29.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2012-09-04 11:32:29.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2012-09-04 11:32:29.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-09-04 11:32:29.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2012-09-04 11:32:29.000 Unknown request type! Default to capabilities. ---------------------- 2012-09-04 11:32:29.000 Destination hostname could not be determined ---------------------- 2012-09-04 11:32:29.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2012-09-04 11:32:29.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-09-04 11:32:29.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-09-04 11:32:29.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2012-09-04 11:32:29.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-09-04 11:32:29.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-09-04 11:32:29.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2012-09-05 11:43:16.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2012-09-05 09:43:16.000 Logging started. ---------------------- 2012-09-05 09:43:16.000 BioCASe protocol used. ---------------------- 2012-09-05 09:43:16.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2012-09-05 09:43:16.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2012-09-05 09:43:16.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-09-05 09:43:16.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2012-09-05 09:43:16.000 Unknown request type! Default to capabilities. ---------------------- 2012-09-05 09:43:16.000 Destination hostname could not be determined ---------------------- 2012-09-05 09:43:16.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2012-09-05 09:43:16.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-09-05 09:43:16.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-09-05 09:43:16.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2012-09-05 09:43:16.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-09-05 09:43:16.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-09-05 09:43:16.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2012-09-07 20:19:48.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2012-09-07 18:19:48.000 Logging started. ---------------------- 2012-09-07 18:19:48.000 BioCASe protocol used. ---------------------- 2012-09-07 18:19:48.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2012-09-07 18:19:48.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2012-09-07 18:19:48.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-09-07 18:19:48.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2012-09-07 18:19:48.000 Unknown request type! Default to capabilities. ---------------------- 2012-09-07 18:19:48.000 Destination hostname could not be determined ---------------------- 2012-09-07 18:19:48.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2012-09-07 18:19:48.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-09-07 18:19:48.000 Pickled file is of latest revision. ---------------------- 2012-09-07 18:19:48.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2012-09-07 18:19:48.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2012-09-07 18:19:48.000 Reset CMF convenience cache data hash. ---------------------- 2012-09-07 18:19:48.000 Loading CMF from the source XML file. ---------------------- 2012-09-07 18:19:48.000 CMF Version 2.1 detected. ---------------------- 2012-09-07 18:19:48.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2012-09-07 18:19:48.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2012-09-07 18:19:48.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-09-07 18:19:48.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-09-07 18:19:48.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2012-09-09 06:19:43.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2012-09-09 04:19:43.000 Logging started. ---------------------- 2012-09-09 04:19:43.000 BioCASe protocol used. ---------------------- 2012-09-09 04:19:43.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2012-09-09 04:19:43.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2012-09-09 04:19:43.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-09-09 04:19:43.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2012-09-09 04:19:43.000 Unknown request type! Default to capabilities. ---------------------- 2012-09-09 04:19:43.000 Destination hostname could not be determined ---------------------- 2012-09-09 04:19:43.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2012-09-09 04:19:43.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-09-09 04:19:43.000 Pickled file is of latest revision. ---------------------- 2012-09-09 04:19:43.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2012-09-09 04:19:43.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2012-09-09 04:19:43.000 Reset CMF convenience cache data hash. ---------------------- 2012-09-09 04:19:43.000 Loading CMF from the source XML file. ---------------------- 2012-09-09 04:19:43.000 CMF Version 2.1 detected. ---------------------- 2012-09-09 04:19:43.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2012-09-09 04:19:43.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2012-09-09 04:19:43.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-09-09 04:19:43.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-09-09 04:19:43.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2012-09-09 07:53:00.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2012-09-09 05:53:00.000 Logging started. ---------------------- 2012-09-09 05:53:00.000 BioCASe protocol used. ---------------------- 2012-09-09 05:53:00.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2012-09-09 05:53:00.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2012-09-09 05:53:00.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-09-09 05:53:00.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2012-09-09 05:53:00.000 Unknown request type! Default to capabilities. ---------------------- 2012-09-09 05:53:00.000 Destination hostname could not be determined ---------------------- 2012-09-09 05:53:00.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2012-09-09 05:53:00.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-09-09 05:53:00.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-09-09 05:53:00.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2012-09-09 05:53:00.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-09-09 05:53:00.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-09-09 05:53:00.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2012-09-09 08:52:45.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2012-09-09 06:52:45.000 Logging started. ---------------------- 2012-09-09 06:52:45.000 BioCASe protocol used. ---------------------- 2012-09-09 06:52:45.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2012-09-09 06:52:45.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2012-09-09 06:52:45.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-09-09 06:52:45.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2012-09-09 06:52:45.000 Unknown request type! Default to capabilities. ---------------------- 2012-09-09 06:52:45.000 Destination hostname could not be determined ---------------------- 2012-09-09 06:52:45.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2012-09-09 06:52:45.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2012-09-09 06:52:45.000 Reset CMF convenience cache data hash. ---------------------- 2012-09-09 06:52:45.000 Loading CMF from the source XML file. ---------------------- 2012-09-09 06:52:45.000 CMF Version 2.1 detected. ---------------------- 2012-09-09 06:52:45.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2012-09-09 06:52:45.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2012-09-09 06:52:45.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-09-09 06:52:45.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-09-09 06:52:45.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2012-09-09 06:52:45.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2012-09-09 06:52:45.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-09-09 06:52:45.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2012-09-13 22:41:58.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2012-09-13 20:41:58.000 Logging started. ---------------------- 2012-09-13 20:41:58.000 BioCASe protocol used. ---------------------- 2012-09-13 20:41:58.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2012-09-13 20:41:58.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2012-09-13 20:41:58.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-09-13 20:41:58.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2012-09-13 20:41:58.000 Unknown request type! Default to capabilities. ---------------------- 2012-09-13 20:41:58.000 Destination hostname could not be determined ---------------------- 2012-09-13 20:41:58.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2012-09-13 20:41:58.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-09-13 20:41:58.000 Pickled file is of latest revision. ---------------------- 2012-09-13 20:41:58.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2012-09-13 20:41:58.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2012-09-13 20:41:58.000 Reset CMF convenience cache data hash. ---------------------- 2012-09-13 20:41:58.000 Loading CMF from the source XML file. ---------------------- 2012-09-13 20:41:58.000 CMF Version 2.1 detected. ---------------------- 2012-09-13 20:41:59.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2012-09-13 20:41:59.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2012-09-13 20:41:59.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-09-13 20:41:59.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-09-13 20:41:59.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2012-09-13 22:58:00.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2012-09-13 20:58:00.000 Logging started. ---------------------- 2012-09-13 20:58:01.000 BioCASe protocol used. ---------------------- 2012-09-13 20:58:01.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2012-09-13 20:58:01.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2012-09-13 20:58:01.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-09-13 20:58:01.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2012-09-13 20:58:01.000 Unknown request type! Default to capabilities. ---------------------- 2012-09-13 20:58:01.000 Destination hostname could not be determined ---------------------- 2012-09-13 20:58:01.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2012-09-13 20:58:01.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-09-13 20:58:01.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-09-13 20:58:01.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2012-09-13 20:58:01.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-09-13 20:58:01.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-09-13 20:58:01.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2012-09-13 23:13:44.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2012-09-13 21:13:44.000 Logging started. ---------------------- 2012-09-13 21:13:44.000 BioCASe protocol used. ---------------------- 2012-09-13 21:13:44.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2012-09-13 21:13:44.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2012-09-13 21:13:44.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-09-13 21:13:44.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2012-09-13 21:13:44.000 Unknown request type! Default to capabilities. ---------------------- 2012-09-13 21:13:44.000 Destination hostname could not be determined ---------------------- 2012-09-13 21:13:44.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2012-09-13 21:13:44.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2012-09-13 21:13:44.000 Reset CMF convenience cache data hash. ---------------------- 2012-09-13 21:13:44.000 Loading CMF from the source XML file. ---------------------- 2012-09-13 21:13:44.000 CMF Version 2.1 detected. ---------------------- 2012-09-13 21:13:44.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2012-09-13 21:13:44.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2012-09-13 21:13:44.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-09-13 21:13:44.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-09-13 21:13:44.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2012-09-13 21:13:44.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2012-09-13 21:13:44.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-09-13 21:13:44.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2012-09-14 05:18:40.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2012-09-14 05:18:40.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString XNHSvOiqvYOfQuux SlTGTSHmRfBXv QAzsEZxfPAZAOhRGz ojvhztrxim shbDODhJsWxaLEmhmL XeAdmXuIHFVSAL THIonvJaSnvLGEUvt zceXtiQxIgYyY EPbhRFMOFx ojvhztrxim
### ERROR LOG The Logging Results: ---------------------- 2012-09-14 03:18:40.000 Logging started. ---------------------- 2012-09-14 03:18:40.000 BioCASe protocol used. ---------------------- 2012-09-14 03:18:40.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2012-09-14 03:18:40.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2012-09-14 03:18:40.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-09-14 03:18:40.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-09-14 03:18:40.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-09-14 05:18:40.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n XNHSvOiqvYOfQuux\n SlTGTSHmRfBXv\n QAzsEZxfPAZAOhRGz\n ojvhztrxim\n shbDODhJsWxaLEmhmL\n XeAdmXuIHFVSAL\n THIonvJaSnvLGEUvt\n zceXtiQxIgYyY\n EPbhRFMOFx\n ojvhztrxim\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-09-14 05:18:40.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n XNHSvOiqvYOfQuux\n SlTGTSHmRfBXv\n QAzsEZxfPAZAOhRGz\n ojvhztrxim\n shbDODhJsWxaLEmhmL\n XeAdmXuIHFVSAL\n THIonvJaSnvLGEUvt\n zceXtiQxIgYyY\n EPbhRFMOFx\n ojvhztrxim\n\n\n\n \n
'} ---------------------- 2012-09-14 03:18:40.000 Found online debuglevel setting: 1 ---------------------- 2012-09-14 03:18:40.000 Setting debuglevel from 0 to 1 ---------------------- 2012-09-14 03:18:40.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-09-14 03:18:40.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-09-14 03:18:40.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2012-09-14 03:18:40.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-09-14 03:18:40.000 Pickled file is of latest revision. ---------------------- 2012-09-14 03:18:40.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-09-14 03:18:40.000 Original filter string parsed:
2.4.2 2012-09-14 05:18:40.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString XNHSvOiqvYOfQuux SlTGTSHmRfBXv QAzsEZxfPAZAOhRGz ojvhztrxim shbDODhJsWxaLEmhmL XeAdmXuIHFVSAL THIonvJaSnvLGEUvt zceXtiQxIgYyY EPbhRFMOFx ojvhztrxim
---------------------- 2012-09-14 03:18:40.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE XNHSvOiqvYOfQuux ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = SlTGTSHmRfBXv ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE QAzsEZxfPAZAOhRGz ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE ojvhztrxim ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE shbDODhJsWxaLEmhmL ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE XeAdmXuIHFVSAL ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE THIonvJaSnvLGEUvt ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = zceXtiQxIgYyY ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = EPbhRFMOFx ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE ojvhztrxim )) ---------------------- 2012-09-14 03:18:40.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE XNHSvOiqvYOfQuux ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = SlTGTSHmRfBXv ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE QAzsEZxfPAZAOhRGz ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE ojvhztrxim ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE shbDODhJsWxaLEmhmL ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE XeAdmXuIHFVSAL ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE THIonvJaSnvLGEUvt ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = zceXtiQxIgYyY ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = EPbhRFMOFx ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE ojvhztrxim )) ---------------------- 2012-09-14 03:18:40.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE XNHSvOiqvYOfQuux ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = SlTGTSHmRfBXv ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE QAzsEZxfPAZAOhRGz ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE ojvhztrxim ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE shbDODhJsWxaLEmhmL ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE XeAdmXuIHFVSAL ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE THIonvJaSnvLGEUvt ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = zceXtiQxIgYyY ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = EPbhRFMOFx ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE ojvhztrxim )) ---------------------- 2012-09-14 03:18:40.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE XNHSvOiqvYOfQuux ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = SlTGTSHmRfBXv ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE QAzsEZxfPAZAOhRGz ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE ojvhztrxim ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE shbDODhJsWxaLEmhmL ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE XeAdmXuIHFVSAL ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE THIonvJaSnvLGEUvt ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = zceXtiQxIgYyY ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = EPbhRFMOFx ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE ojvhztrxim )) ---------------------- 2012-09-14 03:18:40.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2012-09-14 03:18:40.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'XNHSvOiqvYOfQuux' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'SlTGTSHmRfBXv' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'QAzsEZxfPAZAOhRGz' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'ojvhztrxim' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'shbDODhJsWxaLEmhmL' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 'XeAdmXuIHFVSAL' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'THIonvJaSnvLGEUvt' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'zceXtiQxIgYyY' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'EPbhRFMOFx' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'ojvhztrxim' ))' ---------------------- 2012-09-14 03:18:40.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "SlTGTSHmRfBXv" ---------------------- 2012-09-14 03:18:40.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2012-09-14 15:26:34.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2012-09-14 15:26:34.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA cstbcj@pdokgz.com USA pumivrhe USA 5304 CZyWm cstbcj@pdokgz.com cstbcj@pdokgz.com pumivrhe
### ERROR LOG The Logging Results: ---------------------- 2012-09-14 13:26:34.000 Logging started. ---------------------- 2012-09-14 13:26:34.000 BioCASe protocol used. ---------------------- 2012-09-14 13:26:34.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2012-09-14 13:26:34.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2012-09-14 13:26:34.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-09-14 13:26:34.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-09-14 13:26:34.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-09-14 15:26:34.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n cstbcj@pdokgz.com\n USA\n pumivrhe\n USA\n 5304\n CZyWm\n cstbcj@pdokgz.com\n cstbcj@pdokgz.com\n pumivrhe\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-09-14 15:26:34.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n cstbcj@pdokgz.com\n USA\n pumivrhe\n USA\n 5304\n CZyWm\n cstbcj@pdokgz.com\n cstbcj@pdokgz.com\n pumivrhe\n\n\n\n \n
'} ---------------------- 2012-09-14 13:26:34.000 Found online debuglevel setting: 1 ---------------------- 2012-09-14 13:26:34.000 Setting debuglevel from 0 to 1 ---------------------- 2012-09-14 13:26:34.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-09-14 13:26:34.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-09-14 13:26:34.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2012-09-14 13:26:34.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-09-14 13:26:35.000 Pickled file is of latest revision. ---------------------- 2012-09-14 13:26:35.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-09-14 13:26:35.000 Original filter string parsed:
2.4.2 2012-09-14 15:26:34.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA cstbcj@pdokgz.com USA pumivrhe USA 5304 CZyWm cstbcj@pdokgz.com cstbcj@pdokgz.com pumivrhe
---------------------- 2012-09-14 13:26:35.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = cstbcj@pdokgz.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE pumivrhe ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 5304 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE CZyWm ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = cstbcj@pdokgz.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = cstbcj@pdokgz.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE pumivrhe )) ---------------------- 2012-09-14 13:26:35.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = cstbcj@pdokgz.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE pumivrhe ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 5304 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE CZyWm ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = cstbcj@pdokgz.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = cstbcj@pdokgz.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE pumivrhe )) ---------------------- 2012-09-14 13:26:35.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = cstbcj@pdokgz.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE pumivrhe ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 5304 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE CZyWm ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = cstbcj@pdokgz.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = cstbcj@pdokgz.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE pumivrhe )) ---------------------- 2012-09-14 13:26:35.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = cstbcj@pdokgz.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE pumivrhe ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 5304 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE CZyWm ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = cstbcj@pdokgz.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = cstbcj@pdokgz.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE pumivrhe )) ---------------------- 2012-09-14 13:26:35.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2012-09-14 13:26:35.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'cstbcj@pdokgz.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'pumivrhe' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '5304' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'CZyWm' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'cstbcj@pdokgz.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'cstbcj@pdokgz.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'pumivrhe' ))' ---------------------- 2012-09-14 13:26:35.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "cstbcj@pdokgz.com" ---------------------- 2012-09-14 13:26:35.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2012-09-14 17:00:05.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 192.38.28.55 to EntomoAlbertinaGBIF
0.98 Sep 14, 2012 5:02:40 PM 192.38.28.55 http://herpnet.africamuseum.be/biocase/pywrapper.cgi?dsa=EntomoAlbertinaGBIF scan
http://www.tdwg.org/schemas/abcd/2.06 http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Metadata/Description/Representation/Title true
### ERROR LOG The Logging Results: ---------------------- 2012-09-14 15:00:05.000 Logging started. ---------------------- 2012-09-14 15:00:05.000 BioCASe protocol used. ---------------------- 2012-09-14 15:00:05.000 Querystring analyzed by pywrapper.cgi directly: {'request': ['\n\n
\n\t0.98\n\tSep 14, 2012 5:02:40 PM\n\t192.38.28.55\n\thttp://herpnet.africamuseum.be/biocase/pywrapper.cgi?dsa=EntomoAlbertinaGBIF\n\tscan\n
\n\thttp://www.tdwg.org/schemas/abcd/2.06\n\thttp://www.tdwg.org/schemas/abcd/2.06\n\t/DataSets/DataSet/Metadata/Description/Representation/Title\n\t\ntrue\n
'], 'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2012-09-14 15:00:05.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2012-09-14 15:00:05.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-09-14 15:00:05.000 HTTP parameter 'request' used for building the request. ---------------------- 2012-09-14 15:00:05.000 All parameters found in the request: {'request_string': '\n\n
\n\t0.98\n\tSep 14, 2012 5:02:40 PM\n\t192.38.28.55\n\thttp://herpnet.africamuseum.be/biocase/pywrapper.cgi?dsa=EntomoAlbertinaGBIF\n\tscan\n
\n\thttp://www.tdwg.org/schemas/abcd/2.06\n\thttp://www.tdwg.org/schemas/abcd/2.06\n\t/DataSets/DataSet/Metadata/Description/Representation/Title\n\t\ntrue\n
', 'request': '\n\n
\n\t0.98\n\tSep 14, 2012 5:02:40 PM\n\t192.38.28.55\n\thttp://herpnet.africamuseum.be/biocase/pywrapper.cgi?dsa=EntomoAlbertinaGBIF\n\tscan\n
\n\thttp://www.tdwg.org/schemas/abcd/2.06\n\thttp://www.tdwg.org/schemas/abcd/2.06\n\t/DataSets/DataSet/Metadata/Description/Representation/Title\n\t\ntrue\n
', 'dsa': 'EntomoAlbertinaGBIF'} ---------------------- 2012-09-14 15:00:05.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-09-14 15:00:05.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-09-14 15:00:05.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_2.06.xml' ---------------------- 2012-09-14 15:00:05.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-09-14 15:00:05.000 Pickled file is of latest revision. ---------------------- 2012-09-14 15:00:05.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-09-14 15:00:05.000 Original filter string parsed:
0.98 Sep 14, 2012 5:02:40 PM 192.38.28.55 http://herpnet.africamuseum.be/biocase/pywrapper.cgi?dsa=EntomoAlbertinaGBIF scan
http://www.tdwg.org/schemas/abcd/2.06 http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Metadata/Description/Representation/Title true
---------------------- 2012-09-14 15:00:05.000 Filter created: None ---------------------- 2012-09-14 15:00:05.000 Compressed filter used: None ---------------------- 2012-09-14 15:00:05.000 REQ_NOT_SEARCHABLE_CONCEPT: The requested concept /DataSets/DataSet/Metadata/Description/Representation/Title is not searchable for this provider! Please do a capabilities request to see all searchable concepts ---------------------- 2012-09-14 15:00:05.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 168, in scan raise RequestNotSearchableConceptError(CMFobj.xpath, self.logObj) RequestNotSearchableConceptError: ---------------------- 2012-09-14 15:00:05.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2012-09-16 20:41:12.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2012-09-16 18:41:12.000 Logging started. ---------------------- 2012-09-16 18:41:12.000 BioCASe protocol used. ---------------------- 2012-09-16 18:41:12.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2012-09-16 18:41:12.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2012-09-16 18:41:12.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-09-16 18:41:12.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2012-09-16 18:41:12.000 Unknown request type! Default to capabilities. ---------------------- 2012-09-16 18:41:12.000 Destination hostname could not be determined ---------------------- 2012-09-16 18:41:12.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2012-09-16 18:41:12.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-09-16 18:41:12.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-09-16 18:41:12.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2012-09-16 18:41:12.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-09-16 18:41:12.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-09-16 18:41:12.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2012-09-19 22:11:58.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2012-09-19 22:11:58.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA eehsbi@rukbxi.com USA fqeqbc USA 7194 BB81i eehsbi@rukbxi.com eehsbi@rukbxi.com fqeqbc
### ERROR LOG The Logging Results: ---------------------- 2012-09-19 20:11:58.000 Logging started. ---------------------- 2012-09-19 20:11:58.000 BioCASe protocol used. ---------------------- 2012-09-19 20:11:58.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2012-09-19 20:11:58.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2012-09-19 20:11:58.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-09-19 20:11:58.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-09-19 20:11:58.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-09-19 22:11:58.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n eehsbi@rukbxi.com\n USA\n fqeqbc\n USA\n 7194\n BB81i\n eehsbi@rukbxi.com\n eehsbi@rukbxi.com\n fqeqbc\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-09-19 22:11:58.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n USA\n eehsbi@rukbxi.com\n USA\n fqeqbc\n USA\n 7194\n BB81i\n eehsbi@rukbxi.com\n eehsbi@rukbxi.com\n fqeqbc\n\n\n\n \n
'} ---------------------- 2012-09-19 20:11:58.000 Found online debuglevel setting: 1 ---------------------- 2012-09-19 20:11:58.000 Setting debuglevel from 0 to 1 ---------------------- 2012-09-19 20:11:58.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-09-19 20:11:58.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-09-19 20:11:58.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2012-09-19 20:11:58.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-09-19 20:11:58.000 Pickled file is of latest revision. ---------------------- 2012-09-19 20:11:58.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-09-19 20:11:58.000 Original filter string parsed:
2.4.2 2012-09-19 22:11:58.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString USA eehsbi@rukbxi.com USA fqeqbc USA 7194 BB81i eehsbi@rukbxi.com eehsbi@rukbxi.com fqeqbc
---------------------- 2012-09-19 20:11:58.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = eehsbi@rukbxi.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE fqeqbc ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 7194 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE BB81i ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = eehsbi@rukbxi.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = eehsbi@rukbxi.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE fqeqbc )) ---------------------- 2012-09-19 20:11:58.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = eehsbi@rukbxi.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE fqeqbc ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 7194 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE BB81i ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = eehsbi@rukbxi.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = eehsbi@rukbxi.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE fqeqbc )) ---------------------- 2012-09-19 20:11:58.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = eehsbi@rukbxi.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE fqeqbc ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 7194 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE BB81i ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = eehsbi@rukbxi.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = eehsbi@rukbxi.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE fqeqbc )) ---------------------- 2012-09-19 20:11:58.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = eehsbi@rukbxi.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE USA ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE fqeqbc ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 7194 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE BB81i ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = eehsbi@rukbxi.com ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = eehsbi@rukbxi.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE fqeqbc )) ---------------------- 2012-09-19 20:11:58.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2012-09-19 20:11:58.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'eehsbi@rukbxi.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'USA' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'fqeqbc' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '7194' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'BB81i' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'eehsbi@rukbxi.com' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'eehsbi@rukbxi.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'fqeqbc' ))' ---------------------- 2012-09-19 20:11:58.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "eehsbi@rukbxi.com" ---------------------- 2012-09-19 20:11:58.000 Setting debuglevel from 1 to 3 **************************************** QRHMLDSMWMP **************************************** ### ERROR TIME 2012-09-20 13:31:23.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to qrhmldsmwmp no request doc set. ### ERROR LOG The Logging Results: ---------------------- 2012-09-20 11:31:23.000 Logging started. ---------------------- 2012-09-20 11:31:23.000 BioCASe protocol used. ---------------------- 2012-09-20 11:31:23.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['qrhmldsmwmp']} ---------------------- 2012-09-20 11:31:23.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/qrhmldsmwmp/provider_setup_file.xml ---------------------- 2012-09-20 11:31:23.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-09-20 11:31:23.000 PRG_PSF_PARSING_ERROR: The Provider Configuration could not be parsed. Please check if "UNKNOWN" is accesible and a valid XML document. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 114, in readConfigFiles self.psfObj.readPSFile() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 104, in readPSFile parse(absFilename, handler) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/__init__.py", line 31, in parse parser.parse(filename_or_stream) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 103, in parse source = saxutils.prepare_input_source(source) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/saxutils.py", line 523, in prepare_input_source f = urllib2.urlopen(source.getSystemId()) File "/usr/lib/python2.4/urllib2.py", line 130, in urlopen return _opener.open(url, data) File "/usr/lib/python2.4/urllib2.py", line 350, in open protocol = req.get_type() File "/usr/lib/python2.4/urllib2.py", line 233, in get_type raise ValueError, "unknown url type: %s" % self.__original ValueError: unknown url type: /var/www/BiocaseProvider_2.4.2/configuration/datasources/qrhmldsmwmp/provider_setup_file.xml ---------------------- 2012-09-20 11:31:23.000 Serious PyWrapper instance crash Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/www/pywrapper.cgi", line 49, in ? pywInstance.readConfigFiles( PSFPath=PSFPath, logDir=logDir) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 118, in readConfigFiles raise ProviderSetupParseError("UNKNOWN", self.logObj) ProviderSetupParseError: ---------------------- 2012-09-20 11:31:23.000 PyWrapper instance is missing its configurations! ---------------------- 2012-09-20 11:31:23.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2012-09-21 03:20:14.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2012-09-21 03:20:14.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString HSuVHlOaw kidrock@msn.com WznPEplWI pitfighter USA 8539 MtpBzD YAlryaeuEtt kidrock@msn.com DYpyxlCReujZcWhHaeE
### ERROR LOG The Logging Results: ---------------------- 2012-09-21 01:20:14.000 Logging started. ---------------------- 2012-09-21 01:20:14.000 BioCASe protocol used. ---------------------- 2012-09-21 01:20:14.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2012-09-21 01:20:14.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2012-09-21 01:20:14.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-09-21 01:20:14.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-09-21 01:20:14.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-09-21 03:20:14.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n HSuVHlOaw\n kidrock@msn.com\n WznPEplWI\n pitfighter\n USA\n 8539\n MtpBzD\n YAlryaeuEtt\n kidrock@msn.com\n DYpyxlCReujZcWhHaeE\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-09-21 03:20:14.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n HSuVHlOaw\n kidrock@msn.com\n WznPEplWI\n pitfighter\n USA\n 8539\n MtpBzD\n YAlryaeuEtt\n kidrock@msn.com\n DYpyxlCReujZcWhHaeE\n\n\n\n \n
'} ---------------------- 2012-09-21 01:20:14.000 Found online debuglevel setting: 1 ---------------------- 2012-09-21 01:20:14.000 Setting debuglevel from 0 to 1 ---------------------- 2012-09-21 01:20:14.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-09-21 01:20:14.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-09-21 01:20:14.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2012-09-21 01:20:14.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-09-21 01:20:14.000 Pickled file is of latest revision. ---------------------- 2012-09-21 01:20:14.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-09-21 01:20:14.000 Original filter string parsed:
2.4.2 2012-09-21 03:20:14.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString HSuVHlOaw kidrock@msn.com WznPEplWI pitfighter USA 8539 MtpBzD YAlryaeuEtt kidrock@msn.com DYpyxlCReujZcWhHaeE
---------------------- 2012-09-21 01:20:14.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE HSuVHlOaw ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = kidrock@msn.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE WznPEplWI ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE pitfighter ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 8539 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE MtpBzD ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = YAlryaeuEtt ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = kidrock@msn.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE DYpyxlCReujZcWhHaeE )) ---------------------- 2012-09-21 01:20:14.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE HSuVHlOaw ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = kidrock@msn.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE WznPEplWI ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE pitfighter ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 8539 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE MtpBzD ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = YAlryaeuEtt ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = kidrock@msn.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE DYpyxlCReujZcWhHaeE )) ---------------------- 2012-09-21 01:20:14.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE HSuVHlOaw ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = kidrock@msn.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE WznPEplWI ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE pitfighter ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 8539 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE MtpBzD ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = YAlryaeuEtt ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = kidrock@msn.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE DYpyxlCReujZcWhHaeE )) ---------------------- 2012-09-21 01:20:14.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE HSuVHlOaw ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = kidrock@msn.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE WznPEplWI ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE pitfighter ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 8539 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE MtpBzD ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = YAlryaeuEtt ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = kidrock@msn.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE DYpyxlCReujZcWhHaeE )) ---------------------- 2012-09-21 01:20:14.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2012-09-21 01:20:14.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'HSuVHlOaw' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'kidrock@msn.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'WznPEplWI' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'pitfighter' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '8539' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'MtpBzD' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'YAlryaeuEtt' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'kidrock@msn.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'DYpyxlCReujZcWhHaeE' ))' ---------------------- 2012-09-21 01:20:14.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "kidrock@msn.com" ---------------------- 2012-09-21 01:20:14.000 Setting debuglevel from 1 to 3 **************************************** TQAODESYC **************************************** ### ERROR TIME 2012-09-23 00:06:00.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to tqaodesyc no request doc set. ### ERROR LOG The Logging Results: ---------------------- 2012-09-22 22:06:00.000 Logging started. ---------------------- 2012-09-22 22:06:00.000 BioCASe protocol used. ---------------------- 2012-09-22 22:06:00.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['tqaodesyc']} ---------------------- 2012-09-22 22:06:00.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/tqaodesyc/provider_setup_file.xml ---------------------- 2012-09-22 22:06:00.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-09-22 22:06:00.000 PRG_PSF_PARSING_ERROR: The Provider Configuration could not be parsed. Please check if "UNKNOWN" is accesible and a valid XML document. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 114, in readConfigFiles self.psfObj.readPSFile() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 104, in readPSFile parse(absFilename, handler) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/__init__.py", line 31, in parse parser.parse(filename_or_stream) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 103, in parse source = saxutils.prepare_input_source(source) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/saxutils.py", line 523, in prepare_input_source f = urllib2.urlopen(source.getSystemId()) File "/usr/lib/python2.4/urllib2.py", line 130, in urlopen return _opener.open(url, data) File "/usr/lib/python2.4/urllib2.py", line 350, in open protocol = req.get_type() File "/usr/lib/python2.4/urllib2.py", line 233, in get_type raise ValueError, "unknown url type: %s" % self.__original ValueError: unknown url type: /var/www/BiocaseProvider_2.4.2/configuration/datasources/tqaodesyc/provider_setup_file.xml ---------------------- 2012-09-22 22:06:00.000 Serious PyWrapper instance crash Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/www/pywrapper.cgi", line 49, in ? pywInstance.readConfigFiles( PSFPath=PSFPath, logDir=logDir) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 118, in readConfigFiles raise ProviderSetupParseError("UNKNOWN", self.logObj) ProviderSetupParseError: ---------------------- 2012-09-22 22:06:00.000 PyWrapper instance is missing its configurations! ---------------------- 2012-09-22 22:06:00.000 Setting debuglevel from 0 to 3 **************************************** EJKBXFMJQL **************************************** ### ERROR TIME 2012-09-23 12:55:07.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to ejkbxfmjql no request doc set. ### ERROR LOG The Logging Results: ---------------------- 2012-09-23 10:55:07.000 Logging started. ---------------------- 2012-09-23 10:55:07.000 BioCASe protocol used. ---------------------- 2012-09-23 10:55:07.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['ejkbxfmjql']} ---------------------- 2012-09-23 10:55:07.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/ejkbxfmjql/provider_setup_file.xml ---------------------- 2012-09-23 10:55:07.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-09-23 10:55:07.000 PRG_PSF_PARSING_ERROR: The Provider Configuration could not be parsed. Please check if "UNKNOWN" is accesible and a valid XML document. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 114, in readConfigFiles self.psfObj.readPSFile() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 104, in readPSFile parse(absFilename, handler) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/__init__.py", line 31, in parse parser.parse(filename_or_stream) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 103, in parse source = saxutils.prepare_input_source(source) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/saxutils.py", line 523, in prepare_input_source f = urllib2.urlopen(source.getSystemId()) File "/usr/lib/python2.4/urllib2.py", line 130, in urlopen return _opener.open(url, data) File "/usr/lib/python2.4/urllib2.py", line 350, in open protocol = req.get_type() File "/usr/lib/python2.4/urllib2.py", line 233, in get_type raise ValueError, "unknown url type: %s" % self.__original ValueError: unknown url type: /var/www/BiocaseProvider_2.4.2/configuration/datasources/ejkbxfmjql/provider_setup_file.xml ---------------------- 2012-09-23 10:55:07.000 Serious PyWrapper instance crash Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/www/pywrapper.cgi", line 49, in ? pywInstance.readConfigFiles( PSFPath=PSFPath, logDir=logDir) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 118, in readConfigFiles raise ProviderSetupParseError("UNKNOWN", self.logObj) ProviderSetupParseError: ---------------------- 2012-09-23 10:55:07.000 PyWrapper instance is missing its configurations! ---------------------- 2012-09-23 10:55:07.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2012-09-23 17:25:29.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2012-09-23 15:25:29.000 Logging started. ---------------------- 2012-09-23 15:25:29.000 BioCASe protocol used. ---------------------- 2012-09-23 15:25:29.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2012-09-23 15:25:29.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2012-09-23 15:25:29.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-09-23 15:25:29.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2012-09-23 15:25:29.000 Unknown request type! Default to capabilities. ---------------------- 2012-09-23 15:25:29.000 Destination hostname could not be determined ---------------------- 2012-09-23 15:25:29.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2012-09-23 15:25:29.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-09-23 15:25:29.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-09-23 15:25:29.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2012-09-23 15:25:29.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-09-23 15:25:29.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-09-23 15:25:29.000 Setting debuglevel from 0 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2012-09-24 10:43:31.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2012-09-24 08:43:31.000 Logging started. ---------------------- 2012-09-24 08:43:31.000 BioCASe protocol used. ---------------------- 2012-09-24 08:43:31.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2012-09-24 08:43:31.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2012-09-24 08:43:31.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-09-24 08:43:31.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2012-09-24 08:43:31.000 Unknown request type! Default to capabilities. ---------------------- 2012-09-24 08:43:31.000 Destination hostname could not be determined ---------------------- 2012-09-24 08:43:31.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2012-09-24 08:43:31.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-09-24 08:43:31.000 Pickled file is of latest revision. ---------------------- 2012-09-24 08:43:31.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2012-09-24 08:43:31.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2012-09-24 08:43:31.000 Reset CMF convenience cache data hash. ---------------------- 2012-09-24 08:43:31.000 Loading CMF from the source XML file. ---------------------- 2012-09-24 08:43:31.000 CMF Version 2.1 detected. ---------------------- 2012-09-24 08:43:31.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2012-09-24 08:43:31.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2012-09-24 08:43:31.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-09-24 08:43:31.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-09-24 08:43:31.000 Setting debuglevel from 0 to 3 **************************************** SNQIZIHJH **************************************** ### ERROR TIME 2012-09-24 14:26:45.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to snqizihjh no request doc set. ### ERROR LOG The Logging Results: ---------------------- 2012-09-24 12:26:45.000 Logging started. ---------------------- 2012-09-24 12:26:45.000 BioCASe protocol used. ---------------------- 2012-09-24 12:26:45.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['snqizihjh']} ---------------------- 2012-09-24 12:26:45.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/snqizihjh/provider_setup_file.xml ---------------------- 2012-09-24 12:26:45.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-09-24 12:26:45.000 PRG_PSF_PARSING_ERROR: The Provider Configuration could not be parsed. Please check if "UNKNOWN" is accesible and a valid XML document. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 114, in readConfigFiles self.psfObj.readPSFile() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 104, in readPSFile parse(absFilename, handler) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/__init__.py", line 31, in parse parser.parse(filename_or_stream) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 103, in parse source = saxutils.prepare_input_source(source) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/saxutils.py", line 523, in prepare_input_source f = urllib2.urlopen(source.getSystemId()) File "/usr/lib/python2.4/urllib2.py", line 130, in urlopen return _opener.open(url, data) File "/usr/lib/python2.4/urllib2.py", line 350, in open protocol = req.get_type() File "/usr/lib/python2.4/urllib2.py", line 233, in get_type raise ValueError, "unknown url type: %s" % self.__original ValueError: unknown url type: /var/www/BiocaseProvider_2.4.2/configuration/datasources/snqizihjh/provider_setup_file.xml ---------------------- 2012-09-24 12:26:45.000 Serious PyWrapper instance crash Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/www/pywrapper.cgi", line 49, in ? pywInstance.readConfigFiles( PSFPath=PSFPath, logDir=logDir) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 118, in readConfigFiles raise ProviderSetupParseError("UNKNOWN", self.logObj) ProviderSetupParseError: ---------------------- 2012-09-24 12:26:45.000 PyWrapper instance is missing its configurations! ---------------------- 2012-09-24 12:26:45.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2012-09-25 14:07:32.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2012-09-25 14:07:31.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString mjeXQZKCNVgtLJ kidrock@msn.com iyTUwCVGdErgebtL Eric USA 82520 XFPp1 cYFfsafgfHkX kidrock@msn.com VmouTdhoYvJvmm
### ERROR LOG The Logging Results: ---------------------- 2012-09-25 12:07:32.000 Logging started. ---------------------- 2012-09-25 12:07:32.000 BioCASe protocol used. ---------------------- 2012-09-25 12:07:32.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2012-09-25 12:07:32.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2012-09-25 12:07:32.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-09-25 12:07:32.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-09-25 12:07:32.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-09-25 14:07:31.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n mjeXQZKCNVgtLJ\n kidrock@msn.com\n iyTUwCVGdErgebtL\n Eric\n USA\n 82520\n XFPp1\n cYFfsafgfHkX\n kidrock@msn.com\n VmouTdhoYvJvmm\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-09-25 14:07:31.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n mjeXQZKCNVgtLJ\n kidrock@msn.com\n iyTUwCVGdErgebtL\n Eric\n USA\n 82520\n XFPp1\n cYFfsafgfHkX\n kidrock@msn.com\n VmouTdhoYvJvmm\n\n\n\n \n
'} ---------------------- 2012-09-25 12:07:32.000 Found online debuglevel setting: 1 ---------------------- 2012-09-25 12:07:32.000 Setting debuglevel from 0 to 1 ---------------------- 2012-09-25 12:07:32.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-09-25 12:07:32.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-09-25 12:07:32.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2012-09-25 12:07:32.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-09-25 12:07:32.000 Pickled file is of latest revision. ---------------------- 2012-09-25 12:07:32.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-09-25 12:07:32.000 Original filter string parsed:
2.4.2 2012-09-25 14:07:31.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString mjeXQZKCNVgtLJ kidrock@msn.com iyTUwCVGdErgebtL Eric USA 82520 XFPp1 cYFfsafgfHkX kidrock@msn.com VmouTdhoYvJvmm
---------------------- 2012-09-25 12:07:32.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE mjeXQZKCNVgtLJ ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = kidrock@msn.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE iyTUwCVGdErgebtL ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Eric ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 82520 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE XFPp1 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = cYFfsafgfHkX ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = kidrock@msn.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE VmouTdhoYvJvmm )) ---------------------- 2012-09-25 12:07:32.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE mjeXQZKCNVgtLJ ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = kidrock@msn.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE iyTUwCVGdErgebtL ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Eric ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 82520 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE XFPp1 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = cYFfsafgfHkX ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = kidrock@msn.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE VmouTdhoYvJvmm )) ---------------------- 2012-09-25 12:07:32.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE mjeXQZKCNVgtLJ ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = kidrock@msn.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE iyTUwCVGdErgebtL ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Eric ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 82520 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE XFPp1 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = cYFfsafgfHkX ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = kidrock@msn.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE VmouTdhoYvJvmm )) ---------------------- 2012-09-25 12:07:32.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE mjeXQZKCNVgtLJ ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = kidrock@msn.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE iyTUwCVGdErgebtL ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Eric ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 82520 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE XFPp1 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = cYFfsafgfHkX ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = kidrock@msn.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE VmouTdhoYvJvmm )) ---------------------- 2012-09-25 12:07:32.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2012-09-25 12:07:32.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'mjeXQZKCNVgtLJ' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'kidrock@msn.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'iyTUwCVGdErgebtL' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Eric' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '82520' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'XFPp1' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'cYFfsafgfHkX' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'kidrock@msn.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'VmouTdhoYvJvmm' ))' ---------------------- 2012-09-25 12:07:32.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "kidrock@msn.com" ---------------------- 2012-09-25 12:07:32.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS20070608 **************************************** ### ERROR TIME 2012-09-29 06:14:03.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians20070608 ### ERROR LOG The Logging Results: ---------------------- 2012-09-29 04:14:03.000 Logging started. ---------------------- 2012-09-29 04:14:03.000 BioCASe protocol used. ---------------------- 2012-09-29 04:14:03.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians20070608']} ---------------------- 2012-09-29 04:14:03.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/provider_setup_file.xml ---------------------- 2012-09-29 04:14:03.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-09-29 04:14:03.000 All parameters found in the request: {'dsa': 'RMCA_Amphibians20070608'} ---------------------- 2012-09-29 04:14:03.000 Unknown request type! Default to capabilities. ---------------------- 2012-09-29 04:14:03.000 Destination hostname could not be determined ---------------------- 2012-09-29 04:14:03.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_1.20.xml' ---------------------- 2012-09-29 04:14:03.000 CMF modified when: 2007-01-30 16:26:41.000 ---------------------- 2012-09-29 04:14:03.000 Reset CMF convenience cache data hash. ---------------------- 2012-09-29 04:14:03.000 Loading CMF from the source XML file. ---------------------- 2012-09-29 04:14:03.000 CMF Version 2.1 detected. ---------------------- 2012-09-29 04:14:03.000 Init CMF with root table: 'v_abcd2v06herpnet' ---------------------- 2012-09-29 04:14:03.000 Root table v_abcd2v06herpnet is not listed in the provider configuration. ---------------------- 2012-09-29 04:14:03.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-09-29 04:14:03.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-09-29 04:14:03.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians20070608/cmf_ABCD_2 06.xml' ---------------------- 2012-09-29 04:14:03.000 Load the pickled CMF object '.cmf_ABCD_2 06.xml.pick' ---------------------- 2012-09-29 04:14:03.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-09-29 04:14:03.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2012-10-02 16:10:40.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2012-10-02 16:10:40.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString JdWlBZaBhMQNv dogkill@yahoo.com tapvPsYxahzwCiZ bobber USA 54683 Rv0RwC rMFePTPMdLA dogkill@yahoo.com MtShxDBbFSkcjZfL
### ERROR LOG The Logging Results: ---------------------- 2012-10-02 14:10:40.000 Logging started. ---------------------- 2012-10-02 14:10:40.000 BioCASe protocol used. ---------------------- 2012-10-02 14:10:40.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2012-10-02 14:10:40.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2012-10-02 14:10:40.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-10-02 14:10:40.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-10-02 14:10:40.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-10-02 16:10:40.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n JdWlBZaBhMQNv\n dogkill@yahoo.com\n tapvPsYxahzwCiZ\n bobber\n USA\n 54683\n Rv0RwC\n rMFePTPMdLA\n dogkill@yahoo.com\n MtShxDBbFSkcjZfL\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-10-02 16:10:40.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n JdWlBZaBhMQNv\n dogkill@yahoo.com\n tapvPsYxahzwCiZ\n bobber\n USA\n 54683\n Rv0RwC\n rMFePTPMdLA\n dogkill@yahoo.com\n MtShxDBbFSkcjZfL\n\n\n\n \n
'} ---------------------- 2012-10-02 14:10:40.000 Found online debuglevel setting: 1 ---------------------- 2012-10-02 14:10:40.000 Setting debuglevel from 0 to 1 ---------------------- 2012-10-02 14:10:40.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-10-02 14:10:40.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-10-02 14:10:40.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2012-10-02 14:10:40.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-10-02 14:10:40.000 Pickled file is of latest revision. ---------------------- 2012-10-02 14:10:40.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-10-02 14:10:40.000 Original filter string parsed:
2.4.2 2012-10-02 16:10:40.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString JdWlBZaBhMQNv dogkill@yahoo.com tapvPsYxahzwCiZ bobber USA 54683 Rv0RwC rMFePTPMdLA dogkill@yahoo.com MtShxDBbFSkcjZfL
---------------------- 2012-10-02 14:10:40.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE JdWlBZaBhMQNv ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = dogkill@yahoo.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE tapvPsYxahzwCiZ ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE bobber ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 54683 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE Rv0RwC ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = rMFePTPMdLA ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = dogkill@yahoo.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE MtShxDBbFSkcjZfL )) ---------------------- 2012-10-02 14:10:40.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE JdWlBZaBhMQNv ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = dogkill@yahoo.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE tapvPsYxahzwCiZ ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE bobber ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 54683 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE Rv0RwC ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = rMFePTPMdLA ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = dogkill@yahoo.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE MtShxDBbFSkcjZfL )) ---------------------- 2012-10-02 14:10:40.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE JdWlBZaBhMQNv ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = dogkill@yahoo.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE tapvPsYxahzwCiZ ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE bobber ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 54683 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE Rv0RwC ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = rMFePTPMdLA ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = dogkill@yahoo.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE MtShxDBbFSkcjZfL )) ---------------------- 2012-10-02 14:10:40.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE JdWlBZaBhMQNv ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = dogkill@yahoo.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE tapvPsYxahzwCiZ ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE bobber ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 54683 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE Rv0RwC ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = rMFePTPMdLA ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = dogkill@yahoo.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE MtShxDBbFSkcjZfL )) ---------------------- 2012-10-02 14:10:40.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2012-10-02 14:10:40.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'JdWlBZaBhMQNv' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'dogkill@yahoo.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'tapvPsYxahzwCiZ' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'bobber' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '54683' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'Rv0RwC' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'rMFePTPMdLA' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'dogkill@yahoo.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'MtShxDBbFSkcjZfL' ))' ---------------------- 2012-10-02 14:10:40.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "dogkill@yahoo.com" ---------------------- 2012-10-02 14:10:40.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2012-10-03 08:38:01.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2012-10-03 08:38:01.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString BtDLgkgSqOMIwdxaFTt kidrock@msn.com zNqHlrXiwdJvcGnFduf Melanie USA 356823 EgKjpo cfsbLeNTKZPjlSZGdt kidrock@msn.com zsPZXjTeWUkeNPbaHa
### ERROR LOG The Logging Results: ---------------------- 2012-10-03 06:38:01.000 Logging started. ---------------------- 2012-10-03 06:38:01.000 BioCASe protocol used. ---------------------- 2012-10-03 06:38:01.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2012-10-03 06:38:01.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2012-10-03 06:38:01.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-10-03 06:38:01.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-10-03 06:38:01.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-10-03 08:38:01.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n BtDLgkgSqOMIwdxaFTt\n kidrock@msn.com\n zNqHlrXiwdJvcGnFduf\n Melanie\n USA\n 356823\n EgKjpo\n cfsbLeNTKZPjlSZGdt\n kidrock@msn.com\n zsPZXjTeWUkeNPbaHa\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-10-03 08:38:01.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n BtDLgkgSqOMIwdxaFTt\n kidrock@msn.com\n zNqHlrXiwdJvcGnFduf\n Melanie\n USA\n 356823\n EgKjpo\n cfsbLeNTKZPjlSZGdt\n kidrock@msn.com\n zsPZXjTeWUkeNPbaHa\n\n\n\n \n
'} ---------------------- 2012-10-03 06:38:01.000 Found online debuglevel setting: 1 ---------------------- 2012-10-03 06:38:01.000 Setting debuglevel from 0 to 1 ---------------------- 2012-10-03 06:38:01.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-10-03 06:38:01.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-10-03 06:38:01.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2012-10-03 06:38:01.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-10-03 06:38:01.000 Pickled file is of latest revision. ---------------------- 2012-10-03 06:38:01.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-10-03 06:38:01.000 Original filter string parsed:
2.4.2 2012-10-03 08:38:01.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString BtDLgkgSqOMIwdxaFTt kidrock@msn.com zNqHlrXiwdJvcGnFduf Melanie USA 356823 EgKjpo cfsbLeNTKZPjlSZGdt kidrock@msn.com zsPZXjTeWUkeNPbaHa
---------------------- 2012-10-03 06:38:01.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE BtDLgkgSqOMIwdxaFTt ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = kidrock@msn.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE zNqHlrXiwdJvcGnFduf ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Melanie ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 356823 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE EgKjpo ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = cfsbLeNTKZPjlSZGdt ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = kidrock@msn.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE zsPZXjTeWUkeNPbaHa )) ---------------------- 2012-10-03 06:38:01.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE BtDLgkgSqOMIwdxaFTt ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = kidrock@msn.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE zNqHlrXiwdJvcGnFduf ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Melanie ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 356823 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE EgKjpo ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = cfsbLeNTKZPjlSZGdt ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = kidrock@msn.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE zsPZXjTeWUkeNPbaHa )) ---------------------- 2012-10-03 06:38:01.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE BtDLgkgSqOMIwdxaFTt ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = kidrock@msn.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE zNqHlrXiwdJvcGnFduf ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Melanie ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 356823 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE EgKjpo ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = cfsbLeNTKZPjlSZGdt ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = kidrock@msn.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE zsPZXjTeWUkeNPbaHa )) ---------------------- 2012-10-03 06:38:01.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE BtDLgkgSqOMIwdxaFTt ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = kidrock@msn.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE zNqHlrXiwdJvcGnFduf ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Melanie ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 356823 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE EgKjpo ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = cfsbLeNTKZPjlSZGdt ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = kidrock@msn.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE zsPZXjTeWUkeNPbaHa )) ---------------------- 2012-10-03 06:38:01.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2012-10-03 06:38:01.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'BtDLgkgSqOMIwdxaFTt' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'kidrock@msn.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'zNqHlrXiwdJvcGnFduf' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Melanie' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '356823' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'EgKjpo' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'cfsbLeNTKZPjlSZGdt' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'kidrock@msn.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'zsPZXjTeWUkeNPbaHa' ))' ---------------------- 2012-10-03 06:38:01.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "kidrock@msn.com" ---------------------- 2012-10-03 06:38:01.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIFBCK **************************************** ### ERROR TIME 2012-10-03 13:06:39.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaGBIFBck ### ERROR LOG The Logging Results: ---------------------- 2012-10-03 11:06:39.000 Logging started. ---------------------- 2012-10-03 11:06:39.000 BioCASe protocol used. ---------------------- 2012-10-03 11:06:39.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIFBck']} ---------------------- 2012-10-03 11:06:39.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/provider_setup_file.xml ---------------------- 2012-10-03 11:06:39.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-10-03 11:06:39.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaGBIFBck'} ---------------------- 2012-10-03 11:06:39.000 Unknown request type! Default to capabilities. ---------------------- 2012-10-03 11:06:39.000 Destination hostname could not be determined ---------------------- 2012-10-03 11:06:39.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_1.20.xml' ---------------------- 2012-10-03 11:06:39.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-10-03 11:06:39.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/1.2 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-10-03 11:06:39.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIFBck/cmf_ABCD_2.06.xml' ---------------------- 2012-10-03 11:06:39.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-10-03 11:06:39.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 260, in loadCMFdata isGood = self.__unpickle__(CMFpick) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 161, in __unpickle__ pickleHash = pickle.load(CMFfo) EOFError ---------------------- 2012-10-03 11:06:39.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2012-10-04 02:45:00.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2012-10-04 02:45:00.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString zerzEtohO cooler111@yahoo.com ZKtXyDkibtcVaAK Christian USA 21785 b15fNu WgpZNBwmaqUdGttB cooler111@yahoo.com YSIFGEFmjRwdcPUlc
### ERROR LOG The Logging Results: ---------------------- 2012-10-04 00:45:00.000 Logging started. ---------------------- 2012-10-04 00:45:00.000 BioCASe protocol used. ---------------------- 2012-10-04 00:45:00.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2012-10-04 00:45:00.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2012-10-04 00:45:00.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-10-04 00:45:00.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-10-04 00:45:00.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-10-04 02:45:00.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n zerzEtohO\n cooler111@yahoo.com\n ZKtXyDkibtcVaAK\n Christian\n USA\n 21785\n b15fNu\n WgpZNBwmaqUdGttB\n cooler111@yahoo.com\n YSIFGEFmjRwdcPUlc\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-10-04 02:45:00.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n zerzEtohO\n cooler111@yahoo.com\n ZKtXyDkibtcVaAK\n Christian\n USA\n 21785\n b15fNu\n WgpZNBwmaqUdGttB\n cooler111@yahoo.com\n YSIFGEFmjRwdcPUlc\n\n\n\n \n
'} ---------------------- 2012-10-04 00:45:00.000 Found online debuglevel setting: 1 ---------------------- 2012-10-04 00:45:00.000 Setting debuglevel from 0 to 1 ---------------------- 2012-10-04 00:45:00.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-10-04 00:45:00.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-10-04 00:45:00.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2012-10-04 00:45:00.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-10-04 00:45:00.000 Pickled file is of latest revision. ---------------------- 2012-10-04 00:45:00.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-10-04 00:45:00.000 Original filter string parsed:
2.4.2 2012-10-04 02:45:00.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString zerzEtohO cooler111@yahoo.com ZKtXyDkibtcVaAK Christian USA 21785 b15fNu WgpZNBwmaqUdGttB cooler111@yahoo.com YSIFGEFmjRwdcPUlc
---------------------- 2012-10-04 00:45:00.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE zerzEtohO ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = cooler111@yahoo.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE ZKtXyDkibtcVaAK ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Christian ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 21785 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE b15fNu ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = WgpZNBwmaqUdGttB ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = cooler111@yahoo.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE YSIFGEFmjRwdcPUlc )) ---------------------- 2012-10-04 00:45:00.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE zerzEtohO ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = cooler111@yahoo.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE ZKtXyDkibtcVaAK ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Christian ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 21785 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE b15fNu ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = WgpZNBwmaqUdGttB ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = cooler111@yahoo.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE YSIFGEFmjRwdcPUlc )) ---------------------- 2012-10-04 00:45:00.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE zerzEtohO ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = cooler111@yahoo.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE ZKtXyDkibtcVaAK ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Christian ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 21785 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE b15fNu ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = WgpZNBwmaqUdGttB ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = cooler111@yahoo.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE YSIFGEFmjRwdcPUlc )) ---------------------- 2012-10-04 00:45:00.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE zerzEtohO ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = cooler111@yahoo.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE ZKtXyDkibtcVaAK ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Christian ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 21785 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE b15fNu ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = WgpZNBwmaqUdGttB ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = cooler111@yahoo.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE YSIFGEFmjRwdcPUlc )) ---------------------- 2012-10-04 00:45:00.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2012-10-04 00:45:00.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'zerzEtohO' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'cooler111@yahoo.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'ZKtXyDkibtcVaAK' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Christian' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '21785' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'b15fNu' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'WgpZNBwmaqUdGttB' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'cooler111@yahoo.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'YSIFGEFmjRwdcPUlc' ))' ---------------------- 2012-10-04 00:45:00.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "cooler111@yahoo.com" ---------------------- 2012-10-04 00:45:00.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2012-10-04 06:16:02.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2012-10-04 06:16:02.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString OoGVOIkzB heyjew@msn.com YLxLdtZbLM Aaliyah USA 9862 fqBhx VqGRFzQEIAq heyjew@msn.com aOymCGvcIfK
### ERROR LOG The Logging Results: ---------------------- 2012-10-04 04:16:02.000 Logging started. ---------------------- 2012-10-04 04:16:02.000 BioCASe protocol used. ---------------------- 2012-10-04 04:16:02.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2012-10-04 04:16:02.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2012-10-04 04:16:02.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-10-04 04:16:02.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-10-04 04:16:02.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-10-04 06:16:02.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n OoGVOIkzB\n heyjew@msn.com\n YLxLdtZbLM\n Aaliyah\n USA\n 9862\n fqBhx\n VqGRFzQEIAq\n heyjew@msn.com\n aOymCGvcIfK\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-10-04 06:16:02.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n OoGVOIkzB\n heyjew@msn.com\n YLxLdtZbLM\n Aaliyah\n USA\n 9862\n fqBhx\n VqGRFzQEIAq\n heyjew@msn.com\n aOymCGvcIfK\n\n\n\n \n
'} ---------------------- 2012-10-04 04:16:02.000 Found online debuglevel setting: 1 ---------------------- 2012-10-04 04:16:02.000 Setting debuglevel from 0 to 1 ---------------------- 2012-10-04 04:16:02.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-10-04 04:16:02.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-10-04 04:16:02.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2012-10-04 04:16:02.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-10-04 04:16:02.000 Pickled file is of latest revision. ---------------------- 2012-10-04 04:16:02.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-10-04 04:16:02.000 Original filter string parsed:
2.4.2 2012-10-04 06:16:02.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString OoGVOIkzB heyjew@msn.com YLxLdtZbLM Aaliyah USA 9862 fqBhx VqGRFzQEIAq heyjew@msn.com aOymCGvcIfK
---------------------- 2012-10-04 04:16:02.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE OoGVOIkzB ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = heyjew@msn.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE YLxLdtZbLM ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Aaliyah ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 9862 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE fqBhx ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = VqGRFzQEIAq ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = heyjew@msn.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE aOymCGvcIfK )) ---------------------- 2012-10-04 04:16:02.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE OoGVOIkzB ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = heyjew@msn.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE YLxLdtZbLM ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Aaliyah ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 9862 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE fqBhx ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = VqGRFzQEIAq ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = heyjew@msn.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE aOymCGvcIfK )) ---------------------- 2012-10-04 04:16:02.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE OoGVOIkzB ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = heyjew@msn.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE YLxLdtZbLM ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Aaliyah ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 9862 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE fqBhx ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = VqGRFzQEIAq ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = heyjew@msn.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE aOymCGvcIfK )) ---------------------- 2012-10-04 04:16:02.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE OoGVOIkzB ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = heyjew@msn.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE YLxLdtZbLM ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Aaliyah ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 9862 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE fqBhx ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = VqGRFzQEIAq ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = heyjew@msn.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE aOymCGvcIfK )) ---------------------- 2012-10-04 04:16:02.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2012-10-04 04:16:02.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'OoGVOIkzB' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'heyjew@msn.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'YLxLdtZbLM' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Aaliyah' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '9862' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'fqBhx' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'VqGRFzQEIAq' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'heyjew@msn.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'aOymCGvcIfK' ))' ---------------------- 2012-10-04 04:16:02.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "heyjew@msn.com" ---------------------- 2012-10-04 04:16:02.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2012-10-04 11:32:33.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 192.38.28.115 to EntomoAlbertinaGBIF
0.98 Oct 4, 2012 11:32:33 AM 192.38.28.115 http://herpnet.africamuseum.be/biocase/pywrapper.cgi?dsa=EntomoAlbertinaGBIF scan
http://www.tdwg.org/schemas/abcd/2.06 http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Metadata/Description/Representation/Title true
### ERROR LOG The Logging Results: ---------------------- 2012-10-04 09:32:33.000 Logging started. ---------------------- 2012-10-04 09:32:33.000 BioCASe protocol used. ---------------------- 2012-10-04 09:32:33.000 Querystring analyzed by pywrapper.cgi directly: {'request': ['\n\n
\n\t0.98\n\tOct 4, 2012 11:32:33 AM\n\t192.38.28.115\n\thttp://herpnet.africamuseum.be/biocase/pywrapper.cgi?dsa=EntomoAlbertinaGBIF\n\tscan\n
\n\thttp://www.tdwg.org/schemas/abcd/2.06\n\thttp://www.tdwg.org/schemas/abcd/2.06\n\t/DataSets/DataSet/Metadata/Description/Representation/Title\n\t\ntrue\n
'], 'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2012-10-04 09:32:33.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2012-10-04 09:32:33.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-10-04 09:32:33.000 HTTP parameter 'request' used for building the request. ---------------------- 2012-10-04 09:32:33.000 All parameters found in the request: {'request_string': '\n\n
\n\t0.98\n\tOct 4, 2012 11:32:33 AM\n\t192.38.28.115\n\thttp://herpnet.africamuseum.be/biocase/pywrapper.cgi?dsa=EntomoAlbertinaGBIF\n\tscan\n
\n\thttp://www.tdwg.org/schemas/abcd/2.06\n\thttp://www.tdwg.org/schemas/abcd/2.06\n\t/DataSets/DataSet/Metadata/Description/Representation/Title\n\t\ntrue\n
', 'request': '\n\n
\n\t0.98\n\tOct 4, 2012 11:32:33 AM\n\t192.38.28.115\n\thttp://herpnet.africamuseum.be/biocase/pywrapper.cgi?dsa=EntomoAlbertinaGBIF\n\tscan\n
\n\thttp://www.tdwg.org/schemas/abcd/2.06\n\thttp://www.tdwg.org/schemas/abcd/2.06\n\t/DataSets/DataSet/Metadata/Description/Representation/Title\n\t\ntrue\n
', 'dsa': 'EntomoAlbertinaGBIF'} ---------------------- 2012-10-04 09:32:33.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-10-04 09:32:33.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-10-04 09:32:33.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/cmf_ABCD_2.06.xml' ---------------------- 2012-10-04 09:32:33.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-10-04 09:32:34.000 Pickled file is of latest revision. ---------------------- 2012-10-04 09:32:34.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-10-04 09:32:34.000 Original filter string parsed:
0.98 Oct 4, 2012 11:32:33 AM 192.38.28.115 http://herpnet.africamuseum.be/biocase/pywrapper.cgi?dsa=EntomoAlbertinaGBIF scan
http://www.tdwg.org/schemas/abcd/2.06 http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Metadata/Description/Representation/Title true
---------------------- 2012-10-04 09:32:34.000 Filter created: None ---------------------- 2012-10-04 09:32:34.000 Compressed filter used: None ---------------------- 2012-10-04 09:32:34.000 REQ_NOT_SEARCHABLE_CONCEPT: The requested concept /DataSets/DataSet/Metadata/Description/Representation/Title is not searchable for this provider! Please do a capabilities request to see all searchable concepts ---------------------- 2012-10-04 09:32:34.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 168, in scan raise RequestNotSearchableConceptError(CMFobj.xpath, self.logObj) RequestNotSearchableConceptError: ---------------------- 2012-10-04 09:32:34.000 Setting debuglevel from 0 to 3 **************************************** JOCLWLXKF **************************************** ### ERROR TIME 2012-10-05 03:12:04.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to joclwlxkf no request doc set. ### ERROR LOG The Logging Results: ---------------------- 2012-10-05 01:12:04.000 Logging started. ---------------------- 2012-10-05 01:12:04.000 BioCASe protocol used. ---------------------- 2012-10-05 01:12:04.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['joclwlxkf']} ---------------------- 2012-10-05 01:12:04.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/joclwlxkf/provider_setup_file.xml ---------------------- 2012-10-05 01:12:04.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-10-05 01:12:04.000 PRG_PSF_PARSING_ERROR: The Provider Configuration could not be parsed. Please check if "UNKNOWN" is accesible and a valid XML document. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 114, in readConfigFiles self.psfObj.readPSFile() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 104, in readPSFile parse(absFilename, handler) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/__init__.py", line 31, in parse parser.parse(filename_or_stream) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 103, in parse source = saxutils.prepare_input_source(source) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/saxutils.py", line 523, in prepare_input_source f = urllib2.urlopen(source.getSystemId()) File "/usr/lib/python2.4/urllib2.py", line 130, in urlopen return _opener.open(url, data) File "/usr/lib/python2.4/urllib2.py", line 350, in open protocol = req.get_type() File "/usr/lib/python2.4/urllib2.py", line 233, in get_type raise ValueError, "unknown url type: %s" % self.__original ValueError: unknown url type: /var/www/BiocaseProvider_2.4.2/configuration/datasources/joclwlxkf/provider_setup_file.xml ---------------------- 2012-10-05 01:12:04.000 Serious PyWrapper instance crash Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/www/pywrapper.cgi", line 49, in ? pywInstance.readConfigFiles( PSFPath=PSFPath, logDir=logDir) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 118, in readConfigFiles raise ProviderSetupParseError("UNKNOWN", self.logObj) ProviderSetupParseError: ---------------------- 2012-10-05 01:12:04.000 PyWrapper instance is missing its configurations! ---------------------- 2012-10-05 01:12:04.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2012-10-05 07:02:57.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2012-10-05 07:02:57.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString rRTltgLgnAicy freeman@hotmail.com qRUmNkpC Lauren USA 94991 okOj8o tadhIoUdQUmk freeman@hotmail.com CMzdMplqeghI
### ERROR LOG The Logging Results: ---------------------- 2012-10-05 05:02:57.000 Logging started. ---------------------- 2012-10-05 05:02:57.000 BioCASe protocol used. ---------------------- 2012-10-05 05:02:57.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2012-10-05 05:02:57.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2012-10-05 05:02:57.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-10-05 05:02:57.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-10-05 05:02:57.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-10-05 07:02:57.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n rRTltgLgnAicy\n freeman@hotmail.com\n qRUmNkpC\n Lauren\n USA\n 94991\n okOj8o\n tadhIoUdQUmk\n freeman@hotmail.com\n CMzdMplqeghI\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-10-05 07:02:57.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n rRTltgLgnAicy\n freeman@hotmail.com\n qRUmNkpC\n Lauren\n USA\n 94991\n okOj8o\n tadhIoUdQUmk\n freeman@hotmail.com\n CMzdMplqeghI\n\n\n\n \n
'} ---------------------- 2012-10-05 05:02:57.000 Found online debuglevel setting: 1 ---------------------- 2012-10-05 05:02:57.000 Setting debuglevel from 0 to 1 ---------------------- 2012-10-05 05:02:57.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-10-05 05:02:57.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-10-05 05:02:57.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2012-10-05 05:02:57.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-10-05 05:02:57.000 Pickled file is of latest revision. ---------------------- 2012-10-05 05:02:57.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-10-05 05:02:57.000 Original filter string parsed:
2.4.2 2012-10-05 07:02:57.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString rRTltgLgnAicy freeman@hotmail.com qRUmNkpC Lauren USA 94991 okOj8o tadhIoUdQUmk freeman@hotmail.com CMzdMplqeghI
---------------------- 2012-10-05 05:02:57.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE rRTltgLgnAicy ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = freeman@hotmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE qRUmNkpC ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Lauren ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 94991 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE okOj8o ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = tadhIoUdQUmk ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = freeman@hotmail.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE CMzdMplqeghI )) ---------------------- 2012-10-05 05:02:57.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE rRTltgLgnAicy ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = freeman@hotmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE qRUmNkpC ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Lauren ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 94991 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE okOj8o ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = tadhIoUdQUmk ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = freeman@hotmail.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE CMzdMplqeghI )) ---------------------- 2012-10-05 05:02:57.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE rRTltgLgnAicy ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = freeman@hotmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE qRUmNkpC ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Lauren ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 94991 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE okOj8o ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = tadhIoUdQUmk ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = freeman@hotmail.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE CMzdMplqeghI )) ---------------------- 2012-10-05 05:02:57.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE rRTltgLgnAicy ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = freeman@hotmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE qRUmNkpC ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Lauren ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 94991 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE okOj8o ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = tadhIoUdQUmk ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = freeman@hotmail.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE CMzdMplqeghI )) ---------------------- 2012-10-05 05:02:57.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2012-10-05 05:02:57.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'rRTltgLgnAicy' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'freeman@hotmail.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'qRUmNkpC' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Lauren' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '94991' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'okOj8o' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'tadhIoUdQUmk' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'freeman@hotmail.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'CMzdMplqeghI' ))' ---------------------- 2012-10-05 05:02:58.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "freeman@hotmail.com" ---------------------- 2012-10-05 05:02:58.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2012-10-05 20:28:49.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2012-10-05 20:28:49.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString cOOXEjNIIuw incomeppc@hotmail.com fydRzzNoPZf John USA 6371 nzR4se NHsofGeXHhHiMfBbp incomeppc@hotmail.com PRexNyIijZWMNQX
### ERROR LOG The Logging Results: ---------------------- 2012-10-05 18:28:49.000 Logging started. ---------------------- 2012-10-05 18:28:49.000 BioCASe protocol used. ---------------------- 2012-10-05 18:28:49.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2012-10-05 18:28:49.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2012-10-05 18:28:49.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-10-05 18:28:49.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-10-05 18:28:49.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-10-05 20:28:49.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n cOOXEjNIIuw\n incomeppc@hotmail.com\n fydRzzNoPZf\n John\n USA\n 6371\n nzR4se\n NHsofGeXHhHiMfBbp\n incomeppc@hotmail.com\n PRexNyIijZWMNQX\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-10-05 20:28:49.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n cOOXEjNIIuw\n incomeppc@hotmail.com\n fydRzzNoPZf\n John\n USA\n 6371\n nzR4se\n NHsofGeXHhHiMfBbp\n incomeppc@hotmail.com\n PRexNyIijZWMNQX\n\n\n\n \n
'} ---------------------- 2012-10-05 18:28:49.000 Found online debuglevel setting: 1 ---------------------- 2012-10-05 18:28:49.000 Setting debuglevel from 0 to 1 ---------------------- 2012-10-05 18:28:49.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-10-05 18:28:50.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-10-05 18:28:50.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2012-10-05 18:28:50.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-10-05 18:28:52.000 Pickled file is of latest revision. ---------------------- 2012-10-05 18:28:52.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-10-05 18:28:52.000 Original filter string parsed:
2.4.2 2012-10-05 20:28:49.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString cOOXEjNIIuw incomeppc@hotmail.com fydRzzNoPZf John USA 6371 nzR4se NHsofGeXHhHiMfBbp incomeppc@hotmail.com PRexNyIijZWMNQX
---------------------- 2012-10-05 18:28:52.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE cOOXEjNIIuw ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = incomeppc@hotmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE fydRzzNoPZf ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE John ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 6371 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE nzR4se ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = NHsofGeXHhHiMfBbp ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = incomeppc@hotmail.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE PRexNyIijZWMNQX )) ---------------------- 2012-10-05 18:28:52.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE cOOXEjNIIuw ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = incomeppc@hotmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE fydRzzNoPZf ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE John ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 6371 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE nzR4se ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = NHsofGeXHhHiMfBbp ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = incomeppc@hotmail.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE PRexNyIijZWMNQX )) ---------------------- 2012-10-05 18:28:52.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE cOOXEjNIIuw ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = incomeppc@hotmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE fydRzzNoPZf ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE John ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 6371 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE nzR4se ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = NHsofGeXHhHiMfBbp ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = incomeppc@hotmail.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE PRexNyIijZWMNQX )) ---------------------- 2012-10-05 18:28:52.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE cOOXEjNIIuw ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = incomeppc@hotmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE fydRzzNoPZf ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE John ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 6371 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE nzR4se ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = NHsofGeXHhHiMfBbp ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = incomeppc@hotmail.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE PRexNyIijZWMNQX )) ---------------------- 2012-10-05 18:28:52.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2012-10-05 18:28:52.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'cOOXEjNIIuw' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'incomeppc@hotmail.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'fydRzzNoPZf' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'John' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '6371' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'nzR4se' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'NHsofGeXHhHiMfBbp' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'incomeppc@hotmail.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'PRexNyIijZWMNQX' ))' ---------------------- 2012-10-05 18:28:52.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "incomeppc@hotmail.com" ---------------------- 2012-10-05 18:28:52.000 Setting debuglevel from 1 to 3 **************************************** KKIXVYTMYQJUCUS **************************************** ### ERROR TIME 2012-10-06 00:13:13.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to kkixvytmyqjucus no request doc set. ### ERROR LOG The Logging Results: ---------------------- 2012-10-05 22:13:13.000 Logging started. ---------------------- 2012-10-05 22:13:13.000 BioCASe protocol used. ---------------------- 2012-10-05 22:13:13.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['kkixvytmyqjucus']} ---------------------- 2012-10-05 22:13:13.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/kkixvytmyqjucus/provider_setup_file.xml ---------------------- 2012-10-05 22:13:13.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-10-05 22:13:14.000 PRG_PSF_PARSING_ERROR: The Provider Configuration could not be parsed. Please check if "UNKNOWN" is accesible and a valid XML document. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 114, in readConfigFiles self.psfObj.readPSFile() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 104, in readPSFile parse(absFilename, handler) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/__init__.py", line 31, in parse parser.parse(filename_or_stream) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 103, in parse source = saxutils.prepare_input_source(source) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/saxutils.py", line 523, in prepare_input_source f = urllib2.urlopen(source.getSystemId()) File "/usr/lib/python2.4/urllib2.py", line 130, in urlopen return _opener.open(url, data) File "/usr/lib/python2.4/urllib2.py", line 350, in open protocol = req.get_type() File "/usr/lib/python2.4/urllib2.py", line 233, in get_type raise ValueError, "unknown url type: %s" % self.__original ValueError: unknown url type: /var/www/BiocaseProvider_2.4.2/configuration/datasources/kkixvytmyqjucus/provider_setup_file.xml ---------------------- 2012-10-05 22:13:14.000 Serious PyWrapper instance crash Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/www/pywrapper.cgi", line 49, in ? pywInstance.readConfigFiles( PSFPath=PSFPath, logDir=logDir) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 118, in readConfigFiles raise ProviderSetupParseError("UNKNOWN", self.logObj) ProviderSetupParseError: ---------------------- 2012-10-05 22:13:14.000 PyWrapper instance is missing its configurations! ---------------------- 2012-10-05 22:13:14.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2012-10-06 08:57:40.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2012-10-06 08:57:40.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString amlIAknYGS bonser@gmail.com yKrIrRkyAfGDOnS Nicholas USA 891637 l1Yeja vGmHWwCgprrVhu bonser@gmail.com PfBsbpULeSxMRyQZvOC
### ERROR LOG The Logging Results: ---------------------- 2012-10-06 06:57:40.000 Logging started. ---------------------- 2012-10-06 06:57:40.000 BioCASe protocol used. ---------------------- 2012-10-06 06:57:40.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2012-10-06 06:57:40.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2012-10-06 06:57:40.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-10-06 06:57:40.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-10-06 06:57:40.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-10-06 08:57:40.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n amlIAknYGS\n bonser@gmail.com\n yKrIrRkyAfGDOnS\n Nicholas\n USA\n 891637\n l1Yeja\n vGmHWwCgprrVhu\n bonser@gmail.com\n PfBsbpULeSxMRyQZvOC\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-10-06 08:57:40.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n amlIAknYGS\n bonser@gmail.com\n yKrIrRkyAfGDOnS\n Nicholas\n USA\n 891637\n l1Yeja\n vGmHWwCgprrVhu\n bonser@gmail.com\n PfBsbpULeSxMRyQZvOC\n\n\n\n \n
'} ---------------------- 2012-10-06 06:57:40.000 Found online debuglevel setting: 1 ---------------------- 2012-10-06 06:57:40.000 Setting debuglevel from 0 to 1 ---------------------- 2012-10-06 06:57:40.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-10-06 06:57:41.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-10-06 06:57:41.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2012-10-06 06:57:41.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-10-06 06:57:41.000 Pickled file is of latest revision. ---------------------- 2012-10-06 06:57:41.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-10-06 06:57:41.000 Original filter string parsed:
2.4.2 2012-10-06 08:57:40.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString amlIAknYGS bonser@gmail.com yKrIrRkyAfGDOnS Nicholas USA 891637 l1Yeja vGmHWwCgprrVhu bonser@gmail.com PfBsbpULeSxMRyQZvOC
---------------------- 2012-10-06 06:57:41.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE amlIAknYGS ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = bonser@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE yKrIrRkyAfGDOnS ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Nicholas ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 891637 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE l1Yeja ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = vGmHWwCgprrVhu ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = bonser@gmail.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE PfBsbpULeSxMRyQZvOC )) ---------------------- 2012-10-06 06:57:41.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE amlIAknYGS ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = bonser@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE yKrIrRkyAfGDOnS ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Nicholas ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 891637 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE l1Yeja ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = vGmHWwCgprrVhu ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = bonser@gmail.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE PfBsbpULeSxMRyQZvOC )) ---------------------- 2012-10-06 06:57:41.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE amlIAknYGS ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = bonser@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE yKrIrRkyAfGDOnS ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Nicholas ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 891637 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE l1Yeja ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = vGmHWwCgprrVhu ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = bonser@gmail.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE PfBsbpULeSxMRyQZvOC )) ---------------------- 2012-10-06 06:57:41.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE amlIAknYGS ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = bonser@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE yKrIrRkyAfGDOnS ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Nicholas ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 891637 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE l1Yeja ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = vGmHWwCgprrVhu ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = bonser@gmail.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE PfBsbpULeSxMRyQZvOC )) ---------------------- 2012-10-06 06:57:41.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2012-10-06 06:57:41.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'amlIAknYGS' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'bonser@gmail.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'yKrIrRkyAfGDOnS' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Nicholas' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '891637' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'l1Yeja' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'vGmHWwCgprrVhu' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'bonser@gmail.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'PfBsbpULeSxMRyQZvOC' ))' ---------------------- 2012-10-06 06:57:42.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "bonser@gmail.com" ---------------------- 2012-10-06 06:57:42.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2012-10-06 12:55:02.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2012-10-06 12:55:02.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString ISPuiJmlFrRnljuqH bonser@gmail.com IgMfZzWYgrIhK Savannah USA 914702 aL0qS TZKUQuhGOgKjL bonser@gmail.com WRsjnDWqYLUVE
### ERROR LOG The Logging Results: ---------------------- 2012-10-06 10:55:02.000 Logging started. ---------------------- 2012-10-06 10:55:02.000 BioCASe protocol used. ---------------------- 2012-10-06 10:55:02.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2012-10-06 10:55:02.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2012-10-06 10:55:02.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-10-06 10:55:02.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-10-06 10:55:02.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-10-06 12:55:02.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n ISPuiJmlFrRnljuqH\n bonser@gmail.com\n IgMfZzWYgrIhK\n Savannah\n USA\n 914702\n aL0qS\n TZKUQuhGOgKjL\n bonser@gmail.com\n WRsjnDWqYLUVE\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-10-06 12:55:02.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n ISPuiJmlFrRnljuqH\n bonser@gmail.com\n IgMfZzWYgrIhK\n Savannah\n USA\n 914702\n aL0qS\n TZKUQuhGOgKjL\n bonser@gmail.com\n WRsjnDWqYLUVE\n\n\n\n \n
'} ---------------------- 2012-10-06 10:55:02.000 Found online debuglevel setting: 1 ---------------------- 2012-10-06 10:55:02.000 Setting debuglevel from 0 to 1 ---------------------- 2012-10-06 10:55:02.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-10-06 10:55:02.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-10-06 10:55:02.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2012-10-06 10:55:02.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-10-06 10:55:02.000 Pickled file is of latest revision. ---------------------- 2012-10-06 10:55:02.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-10-06 10:55:02.000 Original filter string parsed:
2.4.2 2012-10-06 12:55:02.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString ISPuiJmlFrRnljuqH bonser@gmail.com IgMfZzWYgrIhK Savannah USA 914702 aL0qS TZKUQuhGOgKjL bonser@gmail.com WRsjnDWqYLUVE
---------------------- 2012-10-06 10:55:02.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE ISPuiJmlFrRnljuqH ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = bonser@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE IgMfZzWYgrIhK ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Savannah ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 914702 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE aL0qS ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = TZKUQuhGOgKjL ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = bonser@gmail.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE WRsjnDWqYLUVE )) ---------------------- 2012-10-06 10:55:02.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE ISPuiJmlFrRnljuqH ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = bonser@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE IgMfZzWYgrIhK ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Savannah ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 914702 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE aL0qS ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = TZKUQuhGOgKjL ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = bonser@gmail.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE WRsjnDWqYLUVE )) ---------------------- 2012-10-06 10:55:02.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE ISPuiJmlFrRnljuqH ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = bonser@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE IgMfZzWYgrIhK ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Savannah ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 914702 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE aL0qS ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = TZKUQuhGOgKjL ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = bonser@gmail.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE WRsjnDWqYLUVE )) ---------------------- 2012-10-06 10:55:02.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE ISPuiJmlFrRnljuqH ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = bonser@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE IgMfZzWYgrIhK ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Savannah ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 914702 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE aL0qS ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = TZKUQuhGOgKjL ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = bonser@gmail.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE WRsjnDWqYLUVE )) ---------------------- 2012-10-06 10:55:02.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2012-10-06 10:55:02.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'ISPuiJmlFrRnljuqH' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'bonser@gmail.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'IgMfZzWYgrIhK' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Savannah' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '914702' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'aL0qS' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'TZKUQuhGOgKjL' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'bonser@gmail.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'WRsjnDWqYLUVE' ))' ---------------------- 2012-10-06 10:55:02.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "bonser@gmail.com" ---------------------- 2012-10-06 10:55:02.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2012-10-06 15:40:38.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2012-10-06 13:40:38.000 Logging started. ---------------------- 2012-10-06 13:40:38.000 BioCASe protocol used. ---------------------- 2012-10-06 13:40:38.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2012-10-06 13:40:38.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2012-10-06 13:40:38.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-10-06 13:40:38.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2012-10-06 13:40:38.000 Unknown request type! Default to capabilities. ---------------------- 2012-10-06 13:40:38.000 Destination hostname could not be determined ---------------------- 2012-10-06 13:40:38.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2012-10-06 13:40:38.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-10-06 13:40:38.000 Pickled file is of latest revision. ---------------------- 2012-10-06 13:40:38.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2012-10-06 13:40:38.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2012-10-06 13:40:38.000 Reset CMF convenience cache data hash. ---------------------- 2012-10-06 13:40:38.000 Loading CMF from the source XML file. ---------------------- 2012-10-06 13:40:38.000 CMF Version 2.1 detected. ---------------------- 2012-10-06 13:40:38.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2012-10-06 13:40:38.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2012-10-06 13:40:38.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-10-06 13:40:38.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-10-06 13:40:38.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2012-10-07 05:15:49.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2012-10-07 05:15:49.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString pnHxuAMldGMgwY gobiz@gmail.com TQeEbbliFY Wyatt USA 978748 yXt4e FuIcZlUKfCUTyZKVk gobiz@gmail.com qBEuCrlRUoLBSaqfyd
### ERROR LOG The Logging Results: ---------------------- 2012-10-07 03:15:49.000 Logging started. ---------------------- 2012-10-07 03:15:49.000 BioCASe protocol used. ---------------------- 2012-10-07 03:15:49.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2012-10-07 03:15:49.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2012-10-07 03:15:49.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-10-07 03:15:49.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-10-07 03:15:49.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-10-07 05:15:49.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n pnHxuAMldGMgwY\n gobiz@gmail.com\n TQeEbbliFY\n Wyatt\n USA\n 978748\n yXt4e\n FuIcZlUKfCUTyZKVk\n gobiz@gmail.com\n qBEuCrlRUoLBSaqfyd\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-10-07 05:15:49.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n pnHxuAMldGMgwY\n gobiz@gmail.com\n TQeEbbliFY\n Wyatt\n USA\n 978748\n yXt4e\n FuIcZlUKfCUTyZKVk\n gobiz@gmail.com\n qBEuCrlRUoLBSaqfyd\n\n\n\n \n
'} ---------------------- 2012-10-07 03:15:49.000 Found online debuglevel setting: 1 ---------------------- 2012-10-07 03:15:49.000 Setting debuglevel from 0 to 1 ---------------------- 2012-10-07 03:15:49.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-10-07 03:15:49.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-10-07 03:15:49.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2012-10-07 03:15:49.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-10-07 03:15:49.000 Pickled file is of latest revision. ---------------------- 2012-10-07 03:15:49.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-10-07 03:15:49.000 Original filter string parsed:
2.4.2 2012-10-07 05:15:49.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString pnHxuAMldGMgwY gobiz@gmail.com TQeEbbliFY Wyatt USA 978748 yXt4e FuIcZlUKfCUTyZKVk gobiz@gmail.com qBEuCrlRUoLBSaqfyd
---------------------- 2012-10-07 03:15:49.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE pnHxuAMldGMgwY ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = gobiz@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE TQeEbbliFY ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Wyatt ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 978748 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE yXt4e ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = FuIcZlUKfCUTyZKVk ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = gobiz@gmail.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE qBEuCrlRUoLBSaqfyd )) ---------------------- 2012-10-07 03:15:49.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE pnHxuAMldGMgwY ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = gobiz@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE TQeEbbliFY ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Wyatt ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 978748 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE yXt4e ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = FuIcZlUKfCUTyZKVk ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = gobiz@gmail.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE qBEuCrlRUoLBSaqfyd )) ---------------------- 2012-10-07 03:15:49.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE pnHxuAMldGMgwY ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = gobiz@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE TQeEbbliFY ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Wyatt ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 978748 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE yXt4e ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = FuIcZlUKfCUTyZKVk ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = gobiz@gmail.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE qBEuCrlRUoLBSaqfyd )) ---------------------- 2012-10-07 03:15:49.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE pnHxuAMldGMgwY ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = gobiz@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE TQeEbbliFY ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Wyatt ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 978748 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE yXt4e ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = FuIcZlUKfCUTyZKVk ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = gobiz@gmail.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE qBEuCrlRUoLBSaqfyd )) ---------------------- 2012-10-07 03:15:49.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2012-10-07 03:15:49.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'pnHxuAMldGMgwY' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'gobiz@gmail.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'TQeEbbliFY' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Wyatt' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '978748' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'yXt4e' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'FuIcZlUKfCUTyZKVk' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'gobiz@gmail.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'qBEuCrlRUoLBSaqfyd' ))' ---------------------- 2012-10-07 03:15:49.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "gobiz@gmail.com" ---------------------- 2012-10-07 03:15:49.000 Setting debuglevel from 1 to 3 **************************************** JOCLWLXKF **************************************** ### ERROR TIME 2012-10-07 10:53:31.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to joclwlxkf no request doc set. ### ERROR LOG The Logging Results: ---------------------- 2012-10-07 08:53:31.000 Logging started. ---------------------- 2012-10-07 08:53:31.000 BioCASe protocol used. ---------------------- 2012-10-07 08:53:31.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['joclwlxkf']} ---------------------- 2012-10-07 08:53:31.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/joclwlxkf/provider_setup_file.xml ---------------------- 2012-10-07 08:53:31.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-10-07 08:53:31.000 PRG_PSF_PARSING_ERROR: The Provider Configuration could not be parsed. Please check if "UNKNOWN" is accesible and a valid XML document. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 114, in readConfigFiles self.psfObj.readPSFile() File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 104, in readPSFile parse(absFilename, handler) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/__init__.py", line 31, in parse parser.parse(filename_or_stream) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/expatreader.py", line 103, in parse source = saxutils.prepare_input_source(source) File "/usr/lib/python2.4/site-packages/_xmlplus/sax/saxutils.py", line 523, in prepare_input_source f = urllib2.urlopen(source.getSystemId()) File "/usr/lib/python2.4/urllib2.py", line 130, in urlopen return _opener.open(url, data) File "/usr/lib/python2.4/urllib2.py", line 350, in open protocol = req.get_type() File "/usr/lib/python2.4/urllib2.py", line 233, in get_type raise ValueError, "unknown url type: %s" % self.__original ValueError: unknown url type: /var/www/BiocaseProvider_2.4.2/configuration/datasources/joclwlxkf/provider_setup_file.xml ---------------------- 2012-10-07 08:53:31.000 Serious PyWrapper instance crash Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/www/pywrapper.cgi", line 49, in ? pywInstance.readConfigFiles( PSFPath=PSFPath, logDir=logDir) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/pywrapper.py", line 118, in readConfigFiles raise ProviderSetupParseError("UNKNOWN", self.logObj) ProviderSetupParseError: ---------------------- 2012-10-07 08:53:31.000 PyWrapper instance is missing its configurations! ---------------------- 2012-10-07 08:53:31.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2012-10-07 21:49:57.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2012-10-07 21:49:57.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString cAIkDjsVZcFLyJKS goodsam@gmail.com EXhJChKVATDWREd Destiny USA 5252 9ZgxZ nJGgJXAlxJoVOCChunX goodsam@gmail.com ATatifWXGgEmfLWI
### ERROR LOG The Logging Results: ---------------------- 2012-10-07 19:49:57.000 Logging started. ---------------------- 2012-10-07 19:49:57.000 BioCASe protocol used. ---------------------- 2012-10-07 19:49:57.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2012-10-07 19:49:57.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2012-10-07 19:49:57.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-10-07 19:49:57.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-10-07 19:49:57.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-10-07 21:49:57.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n cAIkDjsVZcFLyJKS\n goodsam@gmail.com\n EXhJChKVATDWREd\n Destiny\n USA\n 5252\n 9ZgxZ\n nJGgJXAlxJoVOCChunX\n goodsam@gmail.com\n ATatifWXGgEmfLWI\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-10-07 21:49:57.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n cAIkDjsVZcFLyJKS\n goodsam@gmail.com\n EXhJChKVATDWREd\n Destiny\n USA\n 5252\n 9ZgxZ\n nJGgJXAlxJoVOCChunX\n goodsam@gmail.com\n ATatifWXGgEmfLWI\n\n\n\n \n
'} ---------------------- 2012-10-07 19:49:57.000 Found online debuglevel setting: 1 ---------------------- 2012-10-07 19:49:57.000 Setting debuglevel from 0 to 1 ---------------------- 2012-10-07 19:49:57.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-10-07 19:49:58.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-10-07 19:49:58.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2012-10-07 19:49:58.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-10-07 19:49:59.000 Pickled file is of latest revision. ---------------------- 2012-10-07 19:49:59.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-10-07 19:49:59.000 Original filter string parsed:
2.4.2 2012-10-07 21:49:57.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString cAIkDjsVZcFLyJKS goodsam@gmail.com EXhJChKVATDWREd Destiny USA 5252 9ZgxZ nJGgJXAlxJoVOCChunX goodsam@gmail.com ATatifWXGgEmfLWI
---------------------- 2012-10-07 19:49:59.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE cAIkDjsVZcFLyJKS ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = goodsam@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE EXhJChKVATDWREd ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Destiny ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 5252 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 9ZgxZ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = nJGgJXAlxJoVOCChunX ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = goodsam@gmail.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE ATatifWXGgEmfLWI )) ---------------------- 2012-10-07 19:49:59.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE cAIkDjsVZcFLyJKS ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = goodsam@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE EXhJChKVATDWREd ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Destiny ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 5252 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 9ZgxZ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = nJGgJXAlxJoVOCChunX ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = goodsam@gmail.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE ATatifWXGgEmfLWI )) ---------------------- 2012-10-07 19:49:59.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE cAIkDjsVZcFLyJKS ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = goodsam@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE EXhJChKVATDWREd ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Destiny ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 5252 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 9ZgxZ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = nJGgJXAlxJoVOCChunX ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = goodsam@gmail.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE ATatifWXGgEmfLWI )) ---------------------- 2012-10-07 19:49:59.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE cAIkDjsVZcFLyJKS ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = goodsam@gmail.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE EXhJChKVATDWREd ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Destiny ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 5252 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 9ZgxZ ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = nJGgJXAlxJoVOCChunX ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = goodsam@gmail.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE ATatifWXGgEmfLWI )) ---------------------- 2012-10-07 19:49:59.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2012-10-07 19:49:59.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'cAIkDjsVZcFLyJKS' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'goodsam@gmail.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'EXhJChKVATDWREd' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Destiny' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '5252' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE '9ZgxZ' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'nJGgJXAlxJoVOCChunX' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'goodsam@gmail.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'ATatifWXGgEmfLWI' ))' ---------------------- 2012-10-07 19:49:59.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "goodsam@gmail.com" ---------------------- 2012-10-07 19:49:59.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2012-10-08 22:48:48.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2012-10-08 22:48:47.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString ijxoSqMwJNGLgcx coolman@msn.com LduDABmeooBgcR Tyler USA 51301 GtUJ04 mmeuVOOlxDnLZ coolman@msn.com jaUedCEBCwWTe
### ERROR LOG The Logging Results: ---------------------- 2012-10-08 20:48:48.000 Logging started. ---------------------- 2012-10-08 20:48:48.000 BioCASe protocol used. ---------------------- 2012-10-08 20:48:48.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2012-10-08 20:48:48.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2012-10-08 20:48:48.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-10-08 20:48:48.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-10-08 20:48:48.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-10-08 22:48:47.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n ijxoSqMwJNGLgcx\n coolman@msn.com\n LduDABmeooBgcR\n Tyler\n USA\n 51301\n GtUJ04\n mmeuVOOlxDnLZ\n coolman@msn.com\n jaUedCEBCwWTe\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-10-08 22:48:47.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n ijxoSqMwJNGLgcx\n coolman@msn.com\n LduDABmeooBgcR\n Tyler\n USA\n 51301\n GtUJ04\n mmeuVOOlxDnLZ\n coolman@msn.com\n jaUedCEBCwWTe\n\n\n\n \n
'} ---------------------- 2012-10-08 20:48:48.000 Found online debuglevel setting: 1 ---------------------- 2012-10-08 20:48:48.000 Setting debuglevel from 0 to 1 ---------------------- 2012-10-08 20:48:48.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-10-08 20:48:49.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-10-08 20:48:49.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2012-10-08 20:48:49.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-10-08 20:48:50.000 Pickled file is of latest revision. ---------------------- 2012-10-08 20:48:50.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-10-08 20:48:50.000 Original filter string parsed:
2.4.2 2012-10-08 22:48:47.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString ijxoSqMwJNGLgcx coolman@msn.com LduDABmeooBgcR Tyler USA 51301 GtUJ04 mmeuVOOlxDnLZ coolman@msn.com jaUedCEBCwWTe
---------------------- 2012-10-08 20:48:50.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE ijxoSqMwJNGLgcx ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = coolman@msn.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE LduDABmeooBgcR ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Tyler ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 51301 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE GtUJ04 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = mmeuVOOlxDnLZ ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = coolman@msn.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jaUedCEBCwWTe )) ---------------------- 2012-10-08 20:48:50.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE ijxoSqMwJNGLgcx ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = coolman@msn.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE LduDABmeooBgcR ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Tyler ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 51301 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE GtUJ04 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = mmeuVOOlxDnLZ ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = coolman@msn.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jaUedCEBCwWTe )) ---------------------- 2012-10-08 20:48:50.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE ijxoSqMwJNGLgcx ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = coolman@msn.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE LduDABmeooBgcR ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Tyler ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 51301 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE GtUJ04 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = mmeuVOOlxDnLZ ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = coolman@msn.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jaUedCEBCwWTe )) ---------------------- 2012-10-08 20:48:50.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE ijxoSqMwJNGLgcx ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = coolman@msn.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE LduDABmeooBgcR ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Tyler ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 51301 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE GtUJ04 ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = mmeuVOOlxDnLZ ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = coolman@msn.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE jaUedCEBCwWTe )) ---------------------- 2012-10-08 20:48:50.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2012-10-08 20:48:50.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'ijxoSqMwJNGLgcx' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'coolman@msn.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'LduDABmeooBgcR' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Tyler' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '51301' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'GtUJ04' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'mmeuVOOlxDnLZ' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'coolman@msn.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'jaUedCEBCwWTe' ))' ---------------------- 2012-10-08 20:48:50.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "coolman@msn.com" ---------------------- 2012-10-08 20:48:50.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2012-10-09 23:48:58.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2012-10-09 23:48:57.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString deeKBSGJu lifestile@msn.com IUptByhn Joseph USA 233862 Az89l VYEokTbtpiWBIERFA lifestile@msn.com WDWYDeuLjnoTW
### ERROR LOG The Logging Results: ---------------------- 2012-10-09 21:48:58.000 Logging started. ---------------------- 2012-10-09 21:48:58.000 BioCASe protocol used. ---------------------- 2012-10-09 21:48:58.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2012-10-09 21:48:58.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2012-10-09 21:48:58.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-10-09 21:48:58.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-10-09 21:48:58.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-10-09 23:48:57.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n deeKBSGJu\n lifestile@msn.com\n IUptByhn\n Joseph\n USA\n 233862\n Az89l\n VYEokTbtpiWBIERFA\n lifestile@msn.com\n WDWYDeuLjnoTW\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-10-09 23:48:57.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n deeKBSGJu\n lifestile@msn.com\n IUptByhn\n Joseph\n USA\n 233862\n Az89l\n VYEokTbtpiWBIERFA\n lifestile@msn.com\n WDWYDeuLjnoTW\n\n\n\n \n
'} ---------------------- 2012-10-09 21:48:58.000 Found online debuglevel setting: 1 ---------------------- 2012-10-09 21:48:58.000 Setting debuglevel from 0 to 1 ---------------------- 2012-10-09 21:48:58.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-10-09 21:48:58.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-10-09 21:48:58.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2012-10-09 21:48:58.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-10-09 21:48:59.000 Pickled file is of latest revision. ---------------------- 2012-10-09 21:48:59.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-10-09 21:48:59.000 Original filter string parsed:
2.4.2 2012-10-09 23:48:57.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString deeKBSGJu lifestile@msn.com IUptByhn Joseph USA 233862 Az89l VYEokTbtpiWBIERFA lifestile@msn.com WDWYDeuLjnoTW
---------------------- 2012-10-09 21:48:59.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE deeKBSGJu ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = lifestile@msn.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE IUptByhn ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Joseph ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 233862 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE Az89l ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = VYEokTbtpiWBIERFA ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = lifestile@msn.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE WDWYDeuLjnoTW )) ---------------------- 2012-10-09 21:48:59.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE deeKBSGJu ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = lifestile@msn.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE IUptByhn ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Joseph ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 233862 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE Az89l ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = VYEokTbtpiWBIERFA ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = lifestile@msn.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE WDWYDeuLjnoTW )) ---------------------- 2012-10-09 21:48:59.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE deeKBSGJu ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = lifestile@msn.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE IUptByhn ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Joseph ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 233862 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE Az89l ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = VYEokTbtpiWBIERFA ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = lifestile@msn.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE WDWYDeuLjnoTW )) ---------------------- 2012-10-09 21:48:59.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE deeKBSGJu ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = lifestile@msn.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE IUptByhn ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Joseph ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 233862 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE Az89l ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = VYEokTbtpiWBIERFA ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = lifestile@msn.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE WDWYDeuLjnoTW )) ---------------------- 2012-10-09 21:48:59.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2012-10-09 21:48:59.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'deeKBSGJu' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'lifestile@msn.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'IUptByhn' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Joseph' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '233862' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'Az89l' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'VYEokTbtpiWBIERFA' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'lifestile@msn.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'WDWYDeuLjnoTW' ))' ---------------------- 2012-10-09 21:48:59.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "lifestile@msn.com" ---------------------- 2012-10-09 21:48:59.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINAGBIF **************************************** ### ERROR TIME 2012-10-10 10:52:50.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to EntomoAlbertinaGBIF
2.4.2 2012-10-10 10:52:49.000 scan
http://digir.net/schema/conceptual/darwin/2003/1.0 /recordset/record/ScientificName
### ERROR LOG The Logging Results: ---------------------- 2012-10-10 08:52:50.000 Logging started. ---------------------- 2012-10-10 08:52:50.000 BioCASe protocol used. ---------------------- 2012-10-10 08:52:50.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaGBIF']} ---------------------- 2012-10-10 08:52:50.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaGBIF/provider_setup_file.xml ---------------------- 2012-10-10 08:52:50.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-10-10 08:52:50.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-10-10 08:52:50.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-10-10 10:52:49.000\n scan\n
\n \n http://digir.net/schema/conceptual/darwin/2003/1.0\n /recordset/record/ScientificName\n \n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-10-10 10:52:49.000\n scan\n
\n \n http://digir.net/schema/conceptual/darwin/2003/1.0\n /recordset/record/ScientificName\n \n \n
'} ---------------------- 2012-10-10 08:52:50.000 Found online debuglevel setting: 1 ---------------------- 2012-10-10 08:52:50.000 Setting debuglevel from 0 to 1 ---------------------- 2012-10-10 08:52:50.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-10-10 08:52:51.000 Try to get CMF for namespace http://digir.net/schema/conceptual/darwin/2003/1.0 ---------------------- 2012-10-10 08:52:51.000 No CMF found! Available CMFs: [u'http://www.tdwg.org/schemas/abcd/1.2', u'http://www.tdwg.org/schemas/abcd/2.06'] ---------------------- 2012-10-10 08:52:51.000 Load CMFile 'None' ---------------------- 2012-10-10 08:52:51.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://digir.net/schema/conceptual/darwin/2003/1.0 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 231, in getCMFobject CMFObject.loadCMFdata(self.psfObj.getCMFfilename(namespace), psfObj=self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 249, in loadCMFdata if type(filename) not in(StringType, UnicodeType) or not os.path.isfile(filename): raise "CMFile %s does not exist. Cant load that file" % filename CMFile None does not exist. Cant load that file ---------------------- 2012-10-10 08:52:51.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 118, in scan self.CMFObject = self.getCMFobject(self.requestObj.reqSchema, altRootTableKey=self.altRootTableAlias) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 237, in getCMFobject raise CMFError(log=self.logObj, cmf=namespace) CMFError: ---------------------- 2012-10-10 08:52:51.000 Setting debuglevel from 1 to 3 **************************************** ENTOMOALBERTINABCK **************************************** ### ERROR TIME 2012-10-10 18:33:06.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to EntomoAlbertinaBck ### ERROR LOG The Logging Results: ---------------------- 2012-10-10 16:33:06.000 Logging started. ---------------------- 2012-10-10 16:33:07.000 BioCASe protocol used. ---------------------- 2012-10-10 16:33:07.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['EntomoAlbertinaBck']} ---------------------- 2012-10-10 16:33:07.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/provider_setup_file.xml ---------------------- 2012-10-10 16:33:07.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-10-10 16:33:07.000 All parameters found in the request: {'dsa': 'EntomoAlbertinaBck'} ---------------------- 2012-10-10 16:33:07.000 Unknown request type! Default to capabilities. ---------------------- 2012-10-10 16:33:07.000 Destination hostname could not be determined ---------------------- 2012-10-10 16:33:07.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_1.20.xml' ---------------------- 2012-10-10 16:33:07.000 Load the pickled CMF object '.cmf_ABCD_1.20.xml.pick' ---------------------- 2012-10-10 16:33:08.000 Pickled file is of latest revision. ---------------------- 2012-10-10 16:33:08.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/EntomoAlbertinaBck/cmf_ABCD_2.06.xml' ---------------------- 2012-10-10 16:33:08.000 CMF modified when: 2008-10-10 11:40:36.000 ---------------------- 2012-10-10 16:33:08.000 Reset CMF convenience cache data hash. ---------------------- 2012-10-10 16:33:08.000 Loading CMF from the source XML file. ---------------------- 2012-10-10 16:33:08.000 CMF Version 2.1 detected. ---------------------- 2012-10-10 16:33:09.000 Init CMF with root table: 'v_albertina_faunistic_burundi_guid' ---------------------- 2012-10-10 16:33:09.000 Root table v_albertina_faunistic_burundi_guid is not listed in the provider configuration. ---------------------- 2012-10-10 16:33:09.000 CFG_PSF_TABLEALIAS_ERROR: The PSF file contains tablealias declaration errors. ---------------------- 2012-10-10 16:33:09.000 CFG_CMF_FILE_CORRUPTED: The CMF DB mapping file http://www.tdwg.org/schemas/abcd/2.06 was corrupt or could not be interpreted. Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_response.py", line 163, in setCapabilitiesContent CMFobj.loadCMFdata(schema.conceptMappingFile, self.psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 270, in loadCMFdata self.__readCMF__(filename, psfObj=psfObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 225, in __readCMF__ self.initForDataProcessing(psfObj, ch.rootTable, ch.staticTables) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/cmf_base.py", line 293, in initForDataProcessing self.tableTreeObj = psfObj.getTableTreeObj(rootTableAlias, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/psf.py", line 246, in getTableTreeObj return self.tablegraph.getTableTree(rootTableAliasName, staticTableAliasList) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 221, in getTableTree self._setRoot(tableTreeObj, rootTableAliasName) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/graph/tablegraph.py", line 240, in _setRoot raise TableConfigError(self.logObj) TableConfigError: ---------------------- 2012-10-10 16:33:09.000 Setting debuglevel from 0 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2012-10-11 00:43:57.000 ### BIOCASE VERSION 2.4.2 ### REQUEST from 193.190.223.48 to RMCA_Amphibians
2.4.2 2012-10-11 00:43:57.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString HRsJgmACpgeQ nogood87@yahoo.com urXTGjKLTrFUrlbG Zoe USA 90130 LlnWXn VaTfEtvhro nogood87@yahoo.com UdRYbjwSFzluNAug
### ERROR LOG The Logging Results: ---------------------- 2012-10-10 22:43:57.000 Logging started. ---------------------- 2012-10-10 22:43:57.000 BioCASe protocol used. ---------------------- 2012-10-10 22:43:57.000 Querystring analyzed by pywrapper.cgi directly: {'dsa': ['RMCA_Amphibians']} ---------------------- 2012-10-10 22:43:57.000 set PSF=/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/provider_setup_file.xml ---------------------- 2012-10-10 22:43:57.000 set logDir=/var/www/BiocaseProvider_2.4.2/log ---------------------- 2012-10-10 22:43:58.000 HTTP parameter 'query' used for building the request. ---------------------- 2012-10-10 22:43:58.000 All parameters found in the request: {'debug': '1', 'query': '\n \n
\n 2.4.2\n 2012-10-11 00:43:57.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n HRsJgmACpgeQ\n nogood87@yahoo.com\n urXTGjKLTrFUrlbG\n Zoe\n USA\n 90130\n LlnWXn\n VaTfEtvhro\n nogood87@yahoo.com\n UdRYbjwSFzluNAug\n\n\n\n \n
', 'request_string': '\n \n
\n 2.4.2\n 2012-10-11 00:43:57.000\n scan\n
\n \n http://www.tdwg.org/schemas/abcd/2.06\n /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString\n \n\n\n HRsJgmACpgeQ\n nogood87@yahoo.com\n urXTGjKLTrFUrlbG\n Zoe\n USA\n 90130\n LlnWXn\n VaTfEtvhro\n nogood87@yahoo.com\n UdRYbjwSFzluNAug\n\n\n\n \n
'} ---------------------- 2012-10-10 22:43:58.000 Found online debuglevel setting: 1 ---------------------- 2012-10-10 22:43:58.000 Setting debuglevel from 0 to 1 ---------------------- 2012-10-10 22:43:58.000 The biocase.wrapper.dbmod.dbmod_postgres database module has been used. ---------------------- 2012-10-10 22:43:59.000 Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 ---------------------- 2012-10-10 22:43:59.000 Load CMFile '/var/www/BiocaseProvider_2.4.2/configuration/datasources/RMCA_Amphibians/cmf_ABCD_2.06.xml' ---------------------- 2012-10-10 22:43:59.000 Load the pickled CMF object '.cmf_ABCD_2.06.xml.pick' ---------------------- 2012-10-10 22:44:01.000 Pickled file is of latest revision. ---------------------- 2012-10-10 22:44:01.000 Global CMF Filters integrated into the SQL: () ---------------------- 2012-10-10 22:44:01.000 Original filter string parsed:
2.4.2 2012-10-11 00:43:57.000 scan
http://www.tdwg.org/schemas/abcd/2.06 /DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString HRsJgmACpgeQ nogood87@yahoo.com urXTGjKLTrFUrlbG Zoe USA 90130 LlnWXn VaTfEtvhro nogood87@yahoo.com UdRYbjwSFzluNAug
---------------------- 2012-10-10 22:44:01.000 Filter created: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE HRsJgmACpgeQ ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = nogood87@yahoo.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE urXTGjKLTrFUrlbG ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Zoe ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 90130 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE LlnWXn ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = VaTfEtvhro ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = nogood87@yahoo.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE UdRYbjwSFzluNAug )) ---------------------- 2012-10-10 22:44:01.000 Compressed filter used: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE HRsJgmACpgeQ ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = nogood87@yahoo.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE urXTGjKLTrFUrlbG ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Zoe ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 90130 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE LlnWXn ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = VaTfEtvhro ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = nogood87@yahoo.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE UdRYbjwSFzluNAug )) ---------------------- 2012-10-10 22:44:01.000 The scan request contained a hidden filter which was integrated: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE HRsJgmACpgeQ ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = nogood87@yahoo.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE urXTGjKLTrFUrlbG ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Zoe ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 90130 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE LlnWXn ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = VaTfEtvhro ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = nogood87@yahoo.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE UdRYbjwSFzluNAug )) ---------------------- 2012-10-10 22:44:01.000 Final fully compressed filter: (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE HRsJgmACpgeQ ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = nogood87@yahoo.com ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE urXTGjKLTrFUrlbG ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE Zoe ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE USA ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE 90130 ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE LlnWXn ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = VaTfEtvhro ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = nogood87@yahoo.com ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE UdRYbjwSFzluNAug )) ---------------------- 2012-10-10 22:44:01.000 Select Distinct List: [v_abcd2v06manytomanyidentifications.fullscientificnamestring(text)] ---------------------- 2012-10-10 22:44:01.000 Executing SQL: 'SELECT DISTINCT "v_abcd2v06manytomanyidentifications"."fullscientificnamestring" FROM "t_abcd2v06herpnet_trigger" AS "v_abcd2v06herpnet_trigger" LEFT JOIN "t_abcd2v06manytomanyidentifications_trigger" AS "v_abcd2v06manytomanyidentifications" ON ("v_abcd2v06manytomanyidentifications"."fk" = "v_abcd2v06herpnet_trigger"."pk") LEFT JOIN "t_abcd2v06higherrankbymanyidentifications_trigger" AS "v_abcd2v06higherrankbymanyidentifications" ON ("v_abcd2v06higherrankbymanyidentifications"."recordfk" = "v_abcd2v06manytomanyidentifications"."pk") WHERE (("v_abcd2v06higherrankbymanyidentifications"."taxonname" ILIKE 'HRsJgmACpgeQ' ) AND ("v_abcd2v06herpnet_trigger"."decimallongitude" = 'nogood87@yahoo.com' ) AND ("v_abcd2v06herpnet_trigger"."locality" ILIKE 'urXTGjKLTrFUrlbG' ) AND ("v_abcd2v06manytomanyidentifications"."fullscientificnamestring" ILIKE 'Zoe' ) AND ("v_abcd2v06herpnet_trigger"."country" ILIKE 'USA' ) AND ("v_abcd2v06herpnet_trigger"."catalognumbertext" ILIKE '90130' ) AND ("v_abcd2v06herpnet_trigger"."coordinatesverbatim" ILIKE 'LlnWXn' ) AND ("v_abcd2v06herpnet_trigger"."decimallatitude" = 'VaTfEtvhro' ) AND ("v_abcd2v06herpnet_trigger"."coordinateuncertainityinmeters" = 'nogood87@yahoo.com' ) AND ("v_abcd2v06manytomanyidentifications"."preferredflag" ILIKE 'UdRYbjwSFzluNAug' ))' ---------------------- 2012-10-10 22:44:02.000 Request processing aborted due to fatal error ! Traceback (most recent call last): File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/protocol/BioCASe/biocase_protocol.py", line 85, in doRequest scanList = operationObj.scan(self.requestObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/operations.py", line 158, in scan rs += self.execDistinct([mapping.getItems()[0]], FilterObj) File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/base_dbmod.py", line 84, in execDistinct return [r[0] for r in self.execSQL(sql, paras)] File "/var/www/BiocaseProvider_2.4.2/lib/biocase/wrapper/dbmod/dbmod_postgres.py", line 85, in execSQL self.c.execute(sql) File "/usr/lib/python2.4/site-packages/pyPgSQL/PgSQL.py", line 3072, in execute raise OperationalError, msg OperationalError: ERROR: invalid input syntax for type double precision: "nogood87@yahoo.com" ---------------------- 2012-10-10 22:44:02.000 Setting debuglevel from 1 to 3 **************************************** RMCA_AMPHIBIANS **************************************** ### ERROR TIME 2012-10-11 20:38:06.11 ### BIOCASE VERSION 2.4.2 ### REQUEST from [] to RMCA_Amphibians
search
http://www.tdwg.org/schemas/abcd/2.06 http://www.tdwg.org/schemas/abcd/2.06 Boophis tephraeomystax (Duméril A.H.A.,1853) false
… ### ERROR LOG