===== NEW PYWRAPPER REQUEST 2012-12-07 21:31:44.476833 ===== INFO 89 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 89 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 93 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 114 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 114 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 131 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 132 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 132 pywrapper.cmf ln167 cmf_base.__readCMF__(): CMF last modified: 2012-12-07 21:31:35 INFO 211 pywrapper.cmf ln184 cmf_base.__readCMF__(): Init CMF with root table: 'specimens' INFO 285 pywrapper.operations ln169 operations.scan(): Scan mapping v_noms_scientifiques.nom_scientifique_complet(text) INFO 286 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT v_noms_scientifiques.nom_scientifique_complet FROM specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) WHERE (v_noms_scientifiques.nom_scientifique_complet LIKE 'A%' )' INFO 290 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 5 INFO 290 pywrapper.operations ln181 operations.scan(): Scan operation succeeded. INFO 291 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 293 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.1 [scan] 0/0 q=(v_noms_scientifiques.nom_scientifique_complet LIKE A* ) scan=/DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString RecordStatus: start=0, count=5, drop=0, total=5 INFO 294 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-07 21:31:48.738783 ===== INFO 88 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 88 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 92 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 113 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 113 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 127 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 127 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 199 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) WHERE (v_noms_scientifiques.nom_scientifique_complet LIKE 'A%' ) ORDER BY specimens.id_specimens LIMIT 11' INFO 202 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 5 INFO 206 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.pk_specimen, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.nom_vern, specimens.langue_vern, specimens.date_obs, specimens.recolteur, localites.localite, localites.nompays, localites.code_pays, specimens.longitude, specimens.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (104, 107, 300, 602, 1001)) ORDER BY specimens.id_specimens' ERROR 208 pywrapper.errors ln28 errorclasses.log(): A SQL statement produced an error: SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.pk_specimen, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.nom_vern, specimens.langue_vern, specimens.date_obs, specimens.recolteur, localites.localite, localites.nompays, localites.code_pays, specimens.longitude, specimens.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (104, 107, 300, 602, 1001)) ORDER BY specimens.id_specimens Traceback (most recent call last): File "/var/www/provider_software_3.1/lib/biocase/wrapper/dbmod/dbmod_mysql.py", line 79, in execSQL self.c.execute(sql) File "/usr/lib/python2.7/dist-packages/MySQLdb/cursors.py", line 174, in execute self.errorhandler(self, exc, value) File "/usr/lib/python2.7/dist-packages/MySQLdb/connections.py", line 36, in defaulterrorhandler raise errorclass, errorvalue OperationalError: (1054, "Unknown column 'specimens.pk_specimen' in 'field list'") INFO 209 pywrapper.protocol ln54 base_protocol.doResponse(): Request processing failed INFO 210 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 212 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.1 [search] 0/10 q=(v_noms_scientifiques.nom_scientifique_complet LIKE A* ) RecordStatus: start=0, count=0, drop=0, total=0 INFO 212 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-07 21:34:30.824526 ===== INFO 87 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 87 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 92 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 113 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 113 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 129 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 130 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 130 pywrapper.cmf ln167 cmf_base.__readCMF__(): CMF last modified: 2012-12-07 21:34:26 INFO 213 pywrapper.cmf ln184 cmf_base.__readCMF__(): Init CMF with root table: 'specimens' INFO 289 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) WHERE (v_noms_scientifiques.nom_scientifique_complet LIKE 'A%' ) ORDER BY specimens.id_specimens LIMIT 11' INFO 292 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 5 INFO 295 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.nom_vern, specimens.langue_vern, specimens.date_obs, specimens.recolteur, localites.localite, localites.nompays, localites.code_pays, specimens.longitude, specimens.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (104, 107, 300, 602, 1001)) ORDER BY specimens.id_specimens' ERROR 297 pywrapper.errors ln28 errorclasses.log(): A SQL statement produced an error: SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.nom_vern, specimens.langue_vern, specimens.date_obs, specimens.recolteur, localites.localite, localites.nompays, localites.code_pays, specimens.longitude, specimens.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (104, 107, 300, 602, 1001)) ORDER BY specimens.id_specimens Traceback (most recent call last): File "/var/www/provider_software_3.1/lib/biocase/wrapper/dbmod/dbmod_mysql.py", line 79, in execSQL self.c.execute(sql) File "/usr/lib/python2.7/dist-packages/MySQLdb/cursors.py", line 174, in execute self.errorhandler(self, exc, value) File "/usr/lib/python2.7/dist-packages/MySQLdb/connections.py", line 36, in defaulterrorhandler raise errorclass, errorvalue OperationalError: (1054, "Unknown column 'localites.localite' in 'field list'") INFO 298 pywrapper.protocol ln54 base_protocol.doResponse(): Request processing failed INFO 299 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 301 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.1 [search] 0/10 q=(v_noms_scientifiques.nom_scientifique_complet LIKE A* ) RecordStatus: start=0, count=0, drop=0, total=0 INFO 301 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-07 21:35:19.685598 ===== INFO 87 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 87 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 91 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 112 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 112 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 127 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 127 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 127 pywrapper.cmf ln167 cmf_base.__readCMF__(): CMF last modified: 2012-12-07 21:35:13 INFO 204 pywrapper.cmf ln184 cmf_base.__readCMF__(): Init CMF with root table: 'specimens' INFO 279 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) WHERE (v_noms_scientifiques.nom_scientifique_complet LIKE 'A%' ) ORDER BY specimens.id_specimens LIMIT 11' INFO 283 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 5 INFO 287 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.nom_vern, specimens.langue_vern, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, specimens.longitude, specimens.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (104, 107, 300, 602, 1001)) ORDER BY specimens.id_specimens' ERROR 289 pywrapper.errors ln28 errorclasses.log(): A SQL statement produced an error: SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.nom_vern, specimens.langue_vern, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, specimens.longitude, specimens.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (104, 107, 300, 602, 1001)) ORDER BY specimens.id_specimens Traceback (most recent call last): File "/var/www/provider_software_3.1/lib/biocase/wrapper/dbmod/dbmod_mysql.py", line 79, in execSQL self.c.execute(sql) File "/usr/lib/python2.7/dist-packages/MySQLdb/cursors.py", line 174, in execute self.errorhandler(self, exc, value) File "/usr/lib/python2.7/dist-packages/MySQLdb/connections.py", line 36, in defaulterrorhandler raise errorclass, errorvalue OperationalError: (1054, "Unknown column 'specimens.longitude' in 'field list'") INFO 290 pywrapper.protocol ln54 base_protocol.doResponse(): Request processing failed INFO 291 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 292 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.1 [search] 0/10 q=(v_noms_scientifiques.nom_scientifique_complet LIKE A* ) RecordStatus: start=0, count=0, drop=0, total=0 INFO 293 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-07 21:36:05.900119 ===== INFO 87 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 87 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 91 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 112 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 113 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 126 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 127 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 127 pywrapper.cmf ln167 cmf_base.__readCMF__(): CMF last modified: 2012-12-07 21:36:03 INFO 205 pywrapper.cmf ln184 cmf_base.__readCMF__(): Init CMF with root table: 'specimens' INFO 278 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) WHERE (v_noms_scientifiques.nom_scientifique_complet LIKE 'A%' ) ORDER BY specimens.id_specimens LIMIT 11' INFO 281 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 5 INFO 282 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.nom_vern, specimens.langue_vern, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (104, 107, 300, 602, 1001)) ORDER BY specimens.id_specimens' ERROR 284 pywrapper.errors ln28 errorclasses.log(): A SQL statement produced an error: SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.nom_vern, specimens.langue_vern, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (104, 107, 300, 602, 1001)) ORDER BY specimens.id_specimens Traceback (most recent call last): File "/var/www/provider_software_3.1/lib/biocase/wrapper/dbmod/dbmod_mysql.py", line 79, in execSQL self.c.execute(sql) File "/usr/lib/python2.7/dist-packages/MySQLdb/cursors.py", line 174, in execute self.errorhandler(self, exc, value) File "/usr/lib/python2.7/dist-packages/MySQLdb/connections.py", line 36, in defaulterrorhandler raise errorclass, errorvalue OperationalError: (1054, "Unknown column 'metadonnees_root.id' in 'field list'") INFO 285 pywrapper.protocol ln54 base_protocol.doResponse(): Request processing failed INFO 285 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 287 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.1 [search] 0/10 q=(v_noms_scientifiques.nom_scientifique_complet LIKE A* ) RecordStatus: start=0, count=0, drop=0, total=0 INFO 287 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-07 21:36:32.115781 ===== INFO 87 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 87 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 91 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 111 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 112 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 125 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 126 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 126 pywrapper.cmf ln167 cmf_base.__readCMF__(): CMF last modified: 2012-12-07 21:36:27 INFO 205 pywrapper.cmf ln184 cmf_base.__readCMF__(): Init CMF with root table: 'specimens' INFO 280 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) WHERE (v_noms_scientifiques.nom_scientifique_complet LIKE 'A%' ) ORDER BY specimens.id_specimens LIMIT 11' INFO 283 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 5 INFO 284 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.nom_vern, specimens.langue_vern, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (104, 107, 300, 602, 1001)) ORDER BY specimens.id_specimens' INFO 288 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 12 WARNING 298 pywrapper.cmf ln1151 cmf_element._getChoicelessChildNodesLOL(): The mandatory child element LowerValue could not be created [0 existing, but 1 required]. The element /DataSets/DataSet/Units/Unit/MeasurementsOrFacts/MeasurementOrFact/MeasurementOrFactAtomised was also dropped. INFO 325 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.20001411438 INFO 327 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 333 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.1 [search] 0/10 q=(v_noms_scientifiques.nom_scientifique_complet LIKE A* ) RecordStatus: start=0, count=5, drop=0, total=5 INFO 333 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-07 21:36:46.468759 ===== INFO 91 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 91 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 95 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 117 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 117 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 131 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 132 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 203 pywrapper.operations ln169 operations.scan(): Scan mapping v_noms_scientifiques.nom_scientifique_complet(text) INFO 204 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT v_noms_scientifiques.nom_scientifique_complet FROM specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) WHERE (v_noms_scientifiques.nom_scientifique_complet LIKE '%' )' INFO 207 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 39 INFO 208 pywrapper.operations ln181 operations.scan(): Scan operation succeeded. INFO 209 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 211 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [scan] 0/0 q=(v_noms_scientifiques.nom_scientifique_complet LIKE * ) scan=/DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString RecordStatus: start=0, count=39, drop=0, total=39 INFO 211 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-07 21:36:47.791380 ===== INFO 88 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 88 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 92 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 113 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 114 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 128 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 128 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 199 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) WHERE ((v_noms_scientifiques.nom_scientifique_complet LIKE '%' ) AND (v_noms_scientifiques.nom_scientifique_complet LIKE 'Belostoma sp. Latreille, 1807' )) ORDER BY specimens.id_specimens LIMIT 11' INFO 203 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 206 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.nom_vern, specimens.langue_vern, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (305)) ORDER BY specimens.id_specimens' INFO 208 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 2 WARNING 221 pywrapper.cmf ln1151 cmf_element._getChoicelessChildNodesLOL(): The mandatory child element LowerValue could not be created [0 existing, but 1 required]. The element /DataSets/DataSet/Units/Unit/MeasurementsOrFacts/MeasurementOrFact/MeasurementOrFactAtomised was also dropped. INFO 223 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.0951738357544 INFO 224 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 227 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [search] 0/10 q=((v_noms_scientifiques.nom_scientifique_complet LIKE * ) AND (v_noms_scientifiques.nom_scientifique_complet LIKE Belostoma sp. Latreille, 1807 )) RecordStatus: start=0, count=1, drop=0, total=1 INFO 227 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-07 21:36:51.510049 ===== INFO 86 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 86 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 91 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 111 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 111 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 126 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 126 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 196 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM metadonnees_root AS metadonnees_root LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens WHERE ((metadonnees.institution_acronyme = 'UPN' ) AND (metadonnees.collection = 'Botanique (UPN)' ) AND (specimens.id_specimens = '305' )) ORDER BY specimens.id_specimens LIMIT 11' INFO 197 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 199 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.nom_vern, specimens.langue_vern, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (305)) ORDER BY specimens.id_specimens' INFO 199 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 2 WARNING 209 pywrapper.cmf ln1151 cmf_element._getChoicelessChildNodesLOL(): The mandatory child element LowerValue could not be created [0 existing, but 1 required]. The element /DataSets/DataSet/Units/Unit/MeasurementsOrFacts/MeasurementOrFact/MeasurementOrFactAtomised was also dropped. INFO 210 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.0847170352936 INFO 211 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 214 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [search] 0/10 q=((metadonnees.institution_acronyme = UPN ) AND (metadonnees.collection = Botanique (UPN) ) AND (specimens.id_specimens = 305 )) RecordStatus: start=0, count=1, drop=0, total=1 INFO 214 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-07 21:37:12.273295 ===== INFO 87 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 87 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 91 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 112 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 112 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 128 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 129 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 204 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM metadonnees_root AS metadonnees_root LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens WHERE ((metadonnees.institution_acronyme = 'UPN' ) AND (metadonnees.collection = 'Botanique (UPN)' ) AND (specimens.id_specimens = '305' )) ORDER BY specimens.id_specimens LIMIT 11' INFO 205 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 207 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.nom_vern, specimens.langue_vern, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (305)) ORDER BY specimens.id_specimens' INFO 207 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 2 WARNING 217 pywrapper.cmf ln1151 cmf_element._getChoicelessChildNodesLOL(): The mandatory child element LowerValue could not be created [0 existing, but 1 required]. The element /DataSets/DataSet/Units/Unit/MeasurementsOrFacts/MeasurementOrFact/MeasurementOrFactAtomised was also dropped. INFO 219 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.091285943985 INFO 220 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 223 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [search] 0/10 q=((metadonnees.institution_acronyme = UPN ) AND (metadonnees.collection = Botanique (UPN) ) AND (specimens.id_specimens = 305 )) RecordStatus: start=0, count=1, drop=0, total=1 INFO 223 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-07 21:38:39.732837 ===== INFO 88 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 88 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 92 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 113 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 113 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 129 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 130 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 204 pywrapper.operations ln169 operations.scan(): Scan mapping specimens.id_specimens(text) INFO 205 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) WHERE (v_noms_scientifiques.nom_scientifique_complet LIKE '%' )' INFO 207 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 42 INFO 207 pywrapper.operations ln181 operations.scan(): Scan operation succeeded. INFO 208 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 210 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [scan] 0/0 q=(v_noms_scientifiques.nom_scientifique_complet LIKE * ) scan=/DataSets/DataSet/Units/Unit/UnitID RecordStatus: start=0, count=42, drop=0, total=42 INFO 210 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-07 21:39:00.041133 ===== INFO 87 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 87 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 92 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 112 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 113 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 129 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 130 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 204 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) WHERE ((v_noms_scientifiques.nom_scientifique_complet LIKE '%' ) AND (specimens.id_specimens LIKE '104' )) ORDER BY specimens.id_specimens LIMIT 11' INFO 205 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 207 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.nom_vern, specimens.langue_vern, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (104)) ORDER BY specimens.id_specimens' INFO 209 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 2 INFO 222 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.0936942100525 INFO 223 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 226 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [search] 0/10 q=((v_noms_scientifiques.nom_scientifique_complet LIKE * ) AND (specimens.id_specimens LIKE 104 )) RecordStatus: start=0, count=1, drop=0, total=1 INFO 226 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-07 21:39:02.039420 ===== INFO 90 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 90 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 94 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 115 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 116 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 131 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 132 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 207 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM metadonnees_root AS metadonnees_root LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens WHERE ((metadonnees.institution_acronyme = 'UPN' ) AND (metadonnees.collection = 'Botanique (UPN)' ) AND (specimens.id_specimens = '104' )) ORDER BY specimens.id_specimens LIMIT 11' INFO 208 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 210 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.nom_vern, specimens.langue_vern, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (104)) ORDER BY specimens.id_specimens' INFO 210 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 2 INFO 222 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.0907709598541 INFO 223 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 225 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [search] 0/10 q=((metadonnees.institution_acronyme = UPN ) AND (metadonnees.collection = Botanique (UPN) ) AND (specimens.id_specimens = 104 )) RecordStatus: start=0, count=1, drop=0, total=1 INFO 226 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-07 21:39:12.201636 ===== INFO 90 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 90 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 95 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 117 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 117 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 134 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 135 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 214 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM metadonnees_root AS metadonnees_root LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens WHERE ((metadonnees.institution_acronyme = 'UPN' ) AND (metadonnees.collection = 'Botanique (UPN)' ) AND (specimens.id_specimens = '104' )) ORDER BY specimens.id_specimens LIMIT 11' INFO 215 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 216 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.nom_vern, specimens.langue_vern, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (104)) ORDER BY specimens.id_specimens' INFO 217 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 2 INFO 229 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.0950078964233 INFO 230 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 233 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [search] 0/10 q=((metadonnees.institution_acronyme = UPN ) AND (metadonnees.collection = Botanique (UPN) ) AND (specimens.id_specimens = 104 )) RecordStatus: start=0, count=1, drop=0, total=1 INFO 233 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-07 21:40:30.623626 ===== INFO 87 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 87 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 91 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 112 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 113 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 126 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 127 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 127 pywrapper.cmf ln167 cmf_base.__readCMF__(): CMF last modified: 2012-12-07 21:40:02 INFO 203 pywrapper.cmf ln184 cmf_base.__readCMF__(): Init CMF with root table: 'specimens' INFO 278 pywrapper.operations ln169 operations.scan(): Scan mapping v_noms_scientifiques.nom_scientifique_complet(text) INFO 279 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT v_noms_scientifiques.nom_scientifique_complet FROM specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) WHERE (v_noms_scientifiques.nom_scientifique_complet LIKE '%' )' INFO 282 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 39 INFO 283 pywrapper.operations ln181 operations.scan(): Scan operation succeeded. INFO 284 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 285 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [scan] 0/0 q=(v_noms_scientifiques.nom_scientifique_complet LIKE * ) scan=/DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString RecordStatus: start=0, count=39, drop=0, total=39 INFO 285 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-07 21:40:50.175591 ===== INFO 87 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 88 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 92 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 113 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 113 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 129 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 129 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 203 pywrapper.operations ln169 operations.scan(): Scan mapping specimens.id_specimens(text) INFO 204 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) WHERE (v_noms_scientifiques.nom_scientifique_complet LIKE '%' )' INFO 206 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 42 INFO 206 pywrapper.operations ln181 operations.scan(): Scan operation succeeded. INFO 207 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 209 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [scan] 0/0 q=(v_noms_scientifiques.nom_scientifique_complet LIKE * ) scan=/DataSets/DataSet/Units/Unit/UnitID RecordStatus: start=0, count=42, drop=0, total=42 INFO 209 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-07 21:40:53.363426 ===== INFO 88 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 88 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 93 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 113 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 114 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 130 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 130 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 205 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) WHERE ((v_noms_scientifiques.nom_scientifique_complet LIKE '%' ) AND (specimens.id_specimens LIKE '104' )) ORDER BY specimens.id_specimens LIMIT 11' INFO 206 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 207 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.langue_vern, specimens.nom_vern, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (104)) ORDER BY specimens.id_specimens' INFO 210 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 2 INFO 226 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.0965919494629 INFO 227 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 231 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [search] 0/10 q=((v_noms_scientifiques.nom_scientifique_complet LIKE * ) AND (specimens.id_specimens LIKE 104 )) RecordStatus: start=0, count=1, drop=0, total=1 INFO 231 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-07 21:40:57.176688 ===== INFO 87 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 87 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 91 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 112 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 112 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 128 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 129 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 203 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM metadonnees_root AS metadonnees_root LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens WHERE ((metadonnees.institution_acronyme = 'UPN' ) AND (metadonnees.collection = 'Botanique (UPN)' ) AND (specimens.id_specimens = '104' )) ORDER BY specimens.id_specimens LIMIT 11' INFO 204 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 205 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.langue_vern, specimens.nom_vern, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (104)) ORDER BY specimens.id_specimens' INFO 205 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 2 INFO 217 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.0891938209534 INFO 218 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 221 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [search] 0/10 q=((metadonnees.institution_acronyme = UPN ) AND (metadonnees.collection = Botanique (UPN) ) AND (specimens.id_specimens = 104 )) RecordStatus: start=0, count=1, drop=0, total=1 INFO 221 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-07 21:41:03.005250 ===== INFO 88 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 88 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 92 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 113 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 114 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 128 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 128 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 200 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM metadonnees_root AS metadonnees_root LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens WHERE ((metadonnees.institution_acronyme = 'UPN' ) AND (metadonnees.collection = 'Botanique (UPN)' ) AND (specimens.id_specimens = '104' )) ORDER BY specimens.id_specimens LIMIT 11' INFO 201 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 203 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.langue_vern, specimens.nom_vern, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (104)) ORDER BY specimens.id_specimens' INFO 203 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 2 INFO 215 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.0866739749908 INFO 216 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 219 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [search] 0/10 q=((metadonnees.institution_acronyme = UPN ) AND (metadonnees.collection = Botanique (UPN) ) AND (specimens.id_specimens = 104 )) RecordStatus: start=0, count=1, drop=0, total=1 INFO 219 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-07 21:42:52.245747 ===== INFO 88 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 88 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 92 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 113 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 113 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 129 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 130 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 206 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM metadonnees_root AS metadonnees_root LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens WHERE ((metadonnees.institution_acronyme = 'UPN' ) AND (metadonnees.collection = 'Botanique (UPN)' ) AND (specimens.id_specimens = '104' )) ORDER BY specimens.id_specimens LIMIT 11' INFO 207 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 208 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.langue_vern, specimens.nom_vern, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (104)) ORDER BY specimens.id_specimens' INFO 209 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 2 INFO 220 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.0916850566864 INFO 221 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 224 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [search] 0/10 q=((metadonnees.institution_acronyme = UPN ) AND (metadonnees.collection = Botanique (UPN) ) AND (specimens.id_specimens = 104 )) RecordStatus: start=0, count=1, drop=0, total=1 INFO 224 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-07 21:43:31.297904 ===== INFO 91 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 92 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 96 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 118 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 118 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 135 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 136 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 136 pywrapper.cmf ln167 cmf_base.__readCMF__(): CMF last modified: 2012-12-07 21:43:28 INFO 216 pywrapper.cmf ln184 cmf_base.__readCMF__(): Init CMF with root table: 'specimens' INFO 292 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM metadonnees_root AS metadonnees_root LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens WHERE ((metadonnees.institution_acronyme = 'UPN' ) AND (metadonnees.collection = 'Botanique (UPN)' ) AND (specimens.id_specimens = '104' )) ORDER BY specimens.id_specimens LIMIT 11' INFO 293 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 294 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.nom_vern, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (104)) ORDER BY specimens.id_specimens' INFO 296 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 2 INFO 308 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.173345804214 INFO 309 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 312 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [search] 0/10 q=((metadonnees.institution_acronyme = UPN ) AND (metadonnees.collection = Botanique (UPN) ) AND (specimens.id_specimens = 104 )) RecordStatus: start=0, count=1, drop=0, total=1 INFO 312 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-07 21:44:29.995190 ===== INFO 87 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 87 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 92 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 112 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 113 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 127 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 127 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 127 pywrapper.cmf ln167 cmf_base.__readCMF__(): CMF last modified: 2012-12-07 21:44:26 INFO 204 pywrapper.cmf ln184 cmf_base.__readCMF__(): Init CMF with root table: 'specimens' INFO 281 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM metadonnees_root AS metadonnees_root LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens WHERE ((metadonnees.institution_acronyme = 'UPN' ) AND (metadonnees.collection = 'Botanique (UPN)' ) AND (specimens.id_specimens = '104' )) ORDER BY specimens.id_specimens LIMIT 11' INFO 283 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 284 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.nom_vern, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (104)) ORDER BY specimens.id_specimens' INFO 284 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 2 INFO 296 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.16903090477 INFO 297 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 300 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [search] 0/10 q=((metadonnees.institution_acronyme = UPN ) AND (metadonnees.collection = Botanique (UPN) ) AND (specimens.id_specimens = 104 )) RecordStatus: start=0, count=1, drop=0, total=1 INFO 300 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-07 21:45:29.302350 ===== INFO 87 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 87 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 92 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 112 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 113 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 126 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 127 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 127 pywrapper.cmf ln167 cmf_base.__readCMF__(): CMF last modified: 2012-12-07 21:45:26 INFO 204 pywrapper.cmf ln184 cmf_base.__readCMF__(): Init CMF with root table: 'specimens' INFO 280 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM metadonnees_root AS metadonnees_root LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens WHERE ((metadonnees.institution_acronyme = 'UPN' ) AND (metadonnees.collection = 'Botanique (UPN)' ) AND (specimens.id_specimens = '104' )) ORDER BY specimens.id_specimens LIMIT 11' INFO 281 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 282 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.nom_vern, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (104)) ORDER BY specimens.id_specimens' INFO 283 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 2 INFO 294 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.167369842529 INFO 295 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 298 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [search] 0/10 q=((metadonnees.institution_acronyme = UPN ) AND (metadonnees.collection = Botanique (UPN) ) AND (specimens.id_specimens = 104 )) RecordStatus: start=0, count=1, drop=0, total=1 INFO 299 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-07 21:46:21.118161 ===== INFO 88 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 88 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 92 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 113 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 113 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 129 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 130 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 131 pywrapper.cmf ln167 cmf_base.__readCMF__(): CMF last modified: 2012-12-07 21:46:11 INFO 211 pywrapper.cmf ln184 cmf_base.__readCMF__(): Init CMF with root table: 'specimens' INFO 288 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM metadonnees_root AS metadonnees_root LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens WHERE ((metadonnees.institution_acronyme = 'UPN' ) AND (metadonnees.collection = 'Botanique (UPN)' ) AND (specimens.id_specimens = '104' )) ORDER BY specimens.id_specimens LIMIT 11' INFO 289 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 290 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.nom_vern, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (104)) ORDER BY specimens.id_specimens' INFO 290 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 2 INFO 302 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.172841072083 INFO 303 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 307 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [search] 0/10 q=((metadonnees.institution_acronyme = UPN ) AND (metadonnees.collection = Botanique (UPN) ) AND (specimens.id_specimens = 104 )) RecordStatus: start=0, count=1, drop=0, total=1 INFO 308 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-07 21:49:28.598858 ===== INFO 87 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 87 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 91 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 111 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 112 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 128 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 129 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 129 pywrapper.cmf ln167 cmf_base.__readCMF__(): CMF last modified: 2012-12-07 21:49:25 INFO 211 pywrapper.cmf ln184 cmf_base.__readCMF__(): Init CMF with root table: 'specimens' INFO 289 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM metadonnees_root AS metadonnees_root LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens WHERE ((metadonnees.institution_acronyme = 'UPN' ) AND (metadonnees.collection = 'Botanique (UPN)' ) AND (specimens.id_specimens = '104' )) ORDER BY specimens.id_specimens LIMIT 11' INFO 290 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 291 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.langue_vern, specimens.nom_vern, specimens.nom_francais, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (104)) ORDER BY specimens.id_specimens' INFO 294 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 2 INFO 310 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.182252883911 INFO 311 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 315 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [search] 0/10 q=((metadonnees.institution_acronyme = UPN ) AND (metadonnees.collection = Botanique (UPN) ) AND (specimens.id_specimens = 104 )) RecordStatus: start=0, count=1, drop=0, total=1 INFO 315 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-07 21:51:26.737783 ===== INFO 89 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 90 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 94 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 115 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 115 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 129 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 130 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 203 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM metadonnees_root AS metadonnees_root LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens WHERE ((metadonnees.institution_acronyme = 'UPN' ) AND (metadonnees.collection = 'Botanique (UPN)' ) AND (specimens.id_specimens = '104' )) ORDER BY specimens.id_specimens LIMIT 11' INFO 204 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 205 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.langue_vern, specimens.nom_vern, specimens.nom_francais, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (104)) ORDER BY specimens.id_specimens' INFO 205 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 2 INFO 217 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.0879089832306 INFO 218 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 222 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [search] 0/10 q=((metadonnees.institution_acronyme = UPN ) AND (metadonnees.collection = Botanique (UPN) ) AND (specimens.id_specimens = 104 )) RecordStatus: start=0, count=1, drop=0, total=1 INFO 222 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-07 21:51:31.039927 ===== INFO 86 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 87 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 91 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 111 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 112 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 126 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 126 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 197 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM metadonnees_root AS metadonnees_root LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens WHERE ((metadonnees.institution_acronyme = 'UPN' ) AND (metadonnees.collection = 'Botanique (UPN)' ) AND (specimens.id_specimens = '104' )) ORDER BY specimens.id_specimens LIMIT 11' INFO 198 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 199 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.langue_vern, specimens.nom_vern, specimens.nom_francais, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (104)) ORDER BY specimens.id_specimens' INFO 200 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 2 INFO 211 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.0856990814209 INFO 212 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 216 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [search] 0/10 q=((metadonnees.institution_acronyme = UPN ) AND (metadonnees.collection = Botanique (UPN) ) AND (specimens.id_specimens = 104 )) RecordStatus: start=0, count=1, drop=0, total=1 INFO 216 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-07 21:52:01.820061 ===== INFO 87 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 87 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 91 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 111 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 112 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 125 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 126 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 196 pywrapper.operations ln169 operations.scan(): Scan mapping v_noms_scientifiques.nom_scientifique_complet(text) INFO 196 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT v_noms_scientifiques.nom_scientifique_complet FROM specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) WHERE (v_noms_scientifiques.nom_scientifique_complet LIKE '%' )' INFO 200 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 39 INFO 201 pywrapper.operations ln181 operations.scan(): Scan operation succeeded. INFO 202 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 203 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [scan] 0/0 q=(v_noms_scientifiques.nom_scientifique_complet LIKE * ) scan=/DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString RecordStatus: start=0, count=39, drop=0, total=39 INFO 203 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-07 21:52:07.670217 ===== INFO 89 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 89 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 93 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 115 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 115 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 130 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 130 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 203 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) WHERE ((v_noms_scientifiques.nom_scientifique_complet LIKE '%' ) AND (v_noms_scientifiques.nom_scientifique_complet LIKE 'Augosoma centaurus Fabricius, 1758' )) ORDER BY specimens.id_specimens LIMIT 11' INFO 206 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 208 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.langue_vern, specimens.nom_vern, specimens.nom_francais, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (104)) ORDER BY specimens.id_specimens' INFO 208 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 2 INFO 220 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.0896098613739 INFO 221 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 224 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [search] 0/10 q=((v_noms_scientifiques.nom_scientifique_complet LIKE * ) AND (v_noms_scientifiques.nom_scientifique_complet LIKE Augosoma centaurus Fabricius, 1758 )) RecordStatus: start=0, count=1, drop=0, total=1 INFO 224 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-07 21:55:46.210875 ===== INFO 88 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 88 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 92 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 119 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 120 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 137 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 137 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 211 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) WHERE ((v_noms_scientifiques.nom_scientifique_complet LIKE '%' ) AND (specimens.id_specimens LIKE '100' )) ORDER BY specimens.id_specimens LIMIT 11' INFO 212 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 214 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.langue_vern, specimens.nom_vern, specimens.nom_francais, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (100)) ORDER BY specimens.id_specimens' INFO 216 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 2 INFO 228 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.0914189815521 INFO 229 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 232 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [search] 0/10 q=((v_noms_scientifiques.nom_scientifique_complet LIKE * ) AND (specimens.id_specimens LIKE 100 )) RecordStatus: start=0, count=1, drop=0, total=1 INFO 232 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-07 22:00:06.874559 ===== INFO 90 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 90 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 94 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 115 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 115 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 131 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 132 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 207 pywrapper.operations ln169 operations.scan(): Scan mapping v_noms_scientifiques.nom_scientifique_complet(text) INFO 208 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT v_noms_scientifiques.nom_scientifique_complet FROM specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) WHERE (v_noms_scientifiques.nom_scientifique_complet LIKE '%' )' INFO 212 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 39 INFO 213 pywrapper.operations ln181 operations.scan(): Scan operation succeeded. INFO 215 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 217 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [scan] 0/0 q=(v_noms_scientifiques.nom_scientifique_complet LIKE * ) scan=/DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString RecordStatus: start=0, count=39, drop=0, total=39 INFO 218 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-07 22:00:08.464586 ===== INFO 88 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 88 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 92 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 113 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 113 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 129 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 130 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 206 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) WHERE ((v_noms_scientifiques.nom_scientifique_complet LIKE '%' ) AND (v_noms_scientifiques.nom_scientifique_complet LIKE 'Acrida turrita Linnaeus, 1758' )) ORDER BY specimens.id_specimens LIMIT 11' INFO 210 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 212 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.langue_vern, specimens.nom_vern, specimens.nom_francais, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (602)) ORDER BY specimens.id_specimens' INFO 215 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 2 INFO 231 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.101576089859 INFO 232 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 236 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [search] 0/10 q=((v_noms_scientifiques.nom_scientifique_complet LIKE * ) AND (v_noms_scientifiques.nom_scientifique_complet LIKE Acrida turrita Linnaeus, 1758 )) RecordStatus: start=0, count=1, drop=0, total=1 INFO 236 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-07 22:47:36.534069 ===== INFO 89 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 89 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 94 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 115 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 115 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 129 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 130 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 201 pywrapper.operations ln169 operations.scan(): Scan mapping v_noms_scientifiques.nom_scientifique_complet(text) INFO 202 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT v_noms_scientifiques.nom_scientifique_complet FROM specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) WHERE (v_noms_scientifiques.nom_scientifique_complet LIKE '%' )' INFO 205 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 39 INFO 206 pywrapper.operations ln181 operations.scan(): Scan operation succeeded. INFO 207 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 208 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [scan] 0/0 q=(v_noms_scientifiques.nom_scientifique_complet LIKE * ) scan=/DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString RecordStatus: start=0, count=39, drop=0, total=39 INFO 208 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-07 22:47:37.722770 ===== INFO 87 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 88 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 92 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 114 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 114 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 129 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 129 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 201 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) WHERE ((v_noms_scientifiques.nom_scientifique_complet LIKE '%' ) AND (v_noms_scientifiques.nom_scientifique_complet LIKE 'Bemisia tabaci Gennadius, 1889' )) ORDER BY specimens.id_specimens LIMIT 11' INFO 204 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 206 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.langue_vern, specimens.nom_vern, specimens.nom_francais, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (900)) ORDER BY specimens.id_specimens' INFO 208 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 2 WARNING 218 pywrapper.cmf ln1151 cmf_element._getChoicelessChildNodesLOL(): The mandatory child element LowerValue could not be created [0 existing, but 1 required]. The element /DataSets/DataSet/Units/Unit/MeasurementsOrFacts/MeasurementOrFact/MeasurementOrFactAtomised was also dropped. INFO 219 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.0905220508575 INFO 220 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 223 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [search] 0/10 q=((v_noms_scientifiques.nom_scientifique_complet LIKE * ) AND (v_noms_scientifiques.nom_scientifique_complet LIKE Bemisia tabaci Gennadius, 1889 )) RecordStatus: start=0, count=1, drop=0, total=1 INFO 223 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-07 22:47:40.021903 ===== INFO 90 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 90 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 95 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 115 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 116 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 130 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 130 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 208 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM metadonnees_root AS metadonnees_root LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens WHERE ((metadonnees.institution_acronyme = 'UPN' ) AND (metadonnees.collection = 'Entomologie (UPN)' ) AND (specimens.id_specimens = '900' )) ORDER BY specimens.id_specimens LIMIT 11' INFO 209 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 210 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.langue_vern, specimens.nom_vern, specimens.nom_francais, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (900)) ORDER BY specimens.id_specimens' INFO 211 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 2 WARNING 221 pywrapper.cmf ln1151 cmf_element._getChoicelessChildNodesLOL(): The mandatory child element LowerValue could not be created [0 existing, but 1 required]. The element /DataSets/DataSet/Units/Unit/MeasurementsOrFacts/MeasurementOrFact/MeasurementOrFactAtomised was also dropped. INFO 222 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.0925209522247 INFO 223 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 227 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [search] 0/10 q=((metadonnees.institution_acronyme = UPN ) AND (metadonnees.collection = Entomologie (UPN) ) AND (specimens.id_specimens = 900 )) RecordStatus: start=0, count=1, drop=0, total=1 INFO 227 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-07 22:47:46.634874 ===== INFO 88 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 88 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 92 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 113 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 113 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 128 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 128 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 201 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) WHERE ((v_noms_scientifiques.nom_scientifique_complet LIKE '%' ) AND (v_noms_scientifiques.nom_scientifique_complet LIKE 'Acrida turrita Linnaeus, 1758' )) ORDER BY specimens.id_specimens LIMIT 11' INFO 204 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 205 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.langue_vern, specimens.nom_vern, specimens.nom_francais, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (602)) ORDER BY specimens.id_specimens' INFO 205 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 2 INFO 217 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.0895879268646 INFO 218 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 222 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [search] 0/10 q=((v_noms_scientifiques.nom_scientifique_complet LIKE * ) AND (v_noms_scientifiques.nom_scientifique_complet LIKE Acrida turrita Linnaeus, 1758 )) RecordStatus: start=0, count=1, drop=0, total=1 INFO 222 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-07 22:47:55.055179 ===== INFO 87 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 87 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 92 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 113 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 113 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 127 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 127 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 200 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM metadonnees_root AS metadonnees_root LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens WHERE ((metadonnees.institution_acronyme = 'UPN' ) AND (metadonnees.collection = 'Entomologie (UPN)' ) AND (specimens.id_specimens = '602' )) ORDER BY specimens.id_specimens LIMIT 11' INFO 201 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 203 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.langue_vern, specimens.nom_vern, specimens.nom_francais, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (602)) ORDER BY specimens.id_specimens' INFO 203 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 2 INFO 216 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.0892939567566 INFO 217 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 220 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [search] 0/10 q=((metadonnees.institution_acronyme = UPN ) AND (metadonnees.collection = Entomologie (UPN) ) AND (specimens.id_specimens = 602 )) RecordStatus: start=0, count=1, drop=0, total=1 INFO 221 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-07 22:54:31.282525 ===== INFO 87 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 87 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 91 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 112 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 112 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 126 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 127 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 198 pywrapper.operations ln169 operations.scan(): Scan mapping v_noms_scientifiques.nom_scientifique_complet(text) INFO 199 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT v_noms_scientifiques.nom_scientifique_complet FROM specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) WHERE (v_noms_scientifiques.nom_scientifique_complet LIKE '%' )' INFO 203 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 39 INFO 203 pywrapper.operations ln181 operations.scan(): Scan operation succeeded. INFO 204 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 205 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [scan] 0/0 q=(v_noms_scientifiques.nom_scientifique_complet LIKE * ) scan=/DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString RecordStatus: start=0, count=39, drop=0, total=39 INFO 206 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-07 22:54:32.438166 ===== INFO 87 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 87 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 91 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 112 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 112 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 128 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 129 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 205 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) WHERE ((v_noms_scientifiques.nom_scientifique_complet LIKE '%' ) AND (v_noms_scientifiques.nom_scientifique_complet LIKE 'Belostoma sp. Latreille, 1807' )) ORDER BY specimens.id_specimens LIMIT 11' INFO 208 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 209 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.langue_vern, specimens.nom_vern, specimens.nom_francais, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (305)) ORDER BY specimens.id_specimens' INFO 212 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 2 WARNING 222 pywrapper.cmf ln1151 cmf_element._getChoicelessChildNodesLOL(): The mandatory child element LowerValue could not be created [0 existing, but 1 required]. The element /DataSets/DataSet/Units/Unit/MeasurementsOrFacts/MeasurementOrFact/MeasurementOrFactAtomised was also dropped. INFO 224 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.0959210395813 INFO 225 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 227 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [search] 0/10 q=((v_noms_scientifiques.nom_scientifique_complet LIKE * ) AND (v_noms_scientifiques.nom_scientifique_complet LIKE Belostoma sp. Latreille, 1807 )) RecordStatus: start=0, count=1, drop=0, total=1 INFO 228 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-07 22:54:34.554616 ===== INFO 87 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 87 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 91 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 112 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 112 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 128 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 129 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 204 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM metadonnees_root AS metadonnees_root LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens WHERE ((metadonnees.institution_acronyme = 'UPN' ) AND (metadonnees.collection = 'Entomologie (UPN)' ) AND (specimens.id_specimens = '305' )) ORDER BY specimens.id_specimens LIMIT 11' INFO 205 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 206 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.langue_vern, specimens.nom_vern, specimens.nom_francais, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (305)) ORDER BY specimens.id_specimens' INFO 207 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 2 WARNING 217 pywrapper.cmf ln1151 cmf_element._getChoicelessChildNodesLOL(): The mandatory child element LowerValue could not be created [0 existing, but 1 required]. The element /DataSets/DataSet/Units/Unit/MeasurementsOrFacts/MeasurementOrFact/MeasurementOrFactAtomised was also dropped. INFO 218 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.0907869338989 INFO 219 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 222 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [search] 0/10 q=((metadonnees.institution_acronyme = UPN ) AND (metadonnees.collection = Entomologie (UPN) ) AND (specimens.id_specimens = 305 )) RecordStatus: start=0, count=1, drop=0, total=1 INFO 222 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-08 00:22:49.330159 ===== INFO 87 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 88 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 92 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 113 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 113 pywrapper.protocol ln66 base_request.init(): Unknown request type! Default to capabilities. INFO 113 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 157 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' WARNING 203 pywrapper.protocol.biocase ln93 biocase_response.postprocessMessage(): Destination hostname could not be determined INFO 203 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 206 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 66.249.75.156 [capabilities] RecordStatus: start=0, count=0, drop=0, total=0 INFO 206 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-08 01:33:08.451533 ===== INFO 90 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 90 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 94 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 115 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 115 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 132 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 133 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 212 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM metadonnees_root AS metadonnees_root LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens WHERE ((metadonnees.institution_acronyme = 'UPN' ) AND (metadonnees.collection = 'Entomologie (UPN)' ) AND (specimens.id_specimens = '602' )) ORDER BY specimens.id_specimens LIMIT 11' INFO 214 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 215 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.langue_vern, specimens.nom_vern, specimens.nom_francais, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (602)) ORDER BY specimens.id_specimens' INFO 216 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 2 INFO 228 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.0957779884338 INFO 229 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 231 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [search] 0/10 q=((metadonnees.institution_acronyme = UPN ) AND (metadonnees.collection = Entomologie (UPN) ) AND (specimens.id_specimens = 602 )) RecordStatus: start=0, count=1, drop=0, total=1 INFO 232 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-09 07:28:18.662449 ===== INFO 91 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 91 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 95 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 116 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 116 pywrapper.protocol ln66 base_request.init(): Unknown request type! Default to capabilities. INFO 117 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 164 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' WARNING 210 pywrapper.protocol.biocase ln93 biocase_response.postprocessMessage(): Destination hostname could not be determined INFO 211 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 214 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 66.249.74.2 [capabilities] RecordStatus: start=0, count=0, drop=0, total=0 INFO 214 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-10 10:59:45.972594 ===== INFO 90 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 90 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 94 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 115 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 115 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 129 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 129 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 203 pywrapper.operations ln169 operations.scan(): Scan mapping v_noms_scientifiques.nom_scientifique_complet(text) INFO 203 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT v_noms_scientifiques.nom_scientifique_complet FROM specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique)' INFO 207 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 39 INFO 207 pywrapper.operations ln181 operations.scan(): Scan operation succeeded. INFO 208 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 210 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [scan] 0/0 q=None scan=/DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString RecordStatus: start=0, count=39, drop=0, total=39 INFO 210 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-10 10:59:54.306388 ===== INFO 91 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 91 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 95 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 116 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 117 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 133 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 134 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 214 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) WHERE (v_noms_scientifiques.nom_scientifique_complet LIKE 'Acrida turrita Linnaeus, 1758' ) ORDER BY specimens.id_specimens LIMIT 11' INFO 218 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 220 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.langue_vern, specimens.nom_vern, specimens.nom_francais, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (602)) ORDER BY specimens.id_specimens' INFO 221 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 2 INFO 237 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.104030132294 INFO 238 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 242 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [search] 0/10 q=(v_noms_scientifiques.nom_scientifique_complet LIKE Acrida turrita Linnaeus, 1758 ) RecordStatus: start=0, count=1, drop=0, total=1 INFO 242 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-10 10:59:59.624784 ===== INFO 89 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 89 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 93 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 114 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 114 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 130 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 131 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 207 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM metadonnees_root AS metadonnees_root LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens WHERE ((metadonnees.institution_acronyme = 'UPN' ) AND (metadonnees.collection = 'Entomologie (UPN)' ) AND (specimens.id_specimens = '602' )) ORDER BY specimens.id_specimens LIMIT 11' INFO 208 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 210 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.langue_vern, specimens.nom_vern, specimens.nom_francais, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (602)) ORDER BY specimens.id_specimens' INFO 210 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 2 INFO 222 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.0924990177155 INFO 224 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 226 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [search] 0/10 q=((metadonnees.institution_acronyme = UPN ) AND (metadonnees.collection = Entomologie (UPN) ) AND (specimens.id_specimens = 602 )) RecordStatus: start=0, count=1, drop=0, total=1 INFO 227 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-10 11:01:37.693481 ===== INFO 90 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 90 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 94 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 115 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 115 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 131 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 132 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 209 pywrapper.operations ln169 operations.scan(): Scan mapping localites.ville(text) INFO 210 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT localites.ville FROM specimens AS specimens LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) WHERE (v_noms_scientifiques.nom_scientifique_complet LIKE 'Osmia bicolor' )' INFO 214 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 214 pywrapper.operations ln181 operations.scan(): Scan operation succeeded. INFO 215 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 216 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [scan] 0/0 q=(v_noms_scientifiques.nom_scientifique_complet LIKE Osmia bicolor ) scan=/DataSets/DataSet/Units/Unit/Gathering/LocalityText RecordStatus: start=0, count=1, drop=0, total=1 INFO 216 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-10 11:01:48.755297 ===== INFO 88 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 88 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 93 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 114 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 114 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 130 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 131 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 208 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) WHERE ((v_noms_scientifiques.nom_scientifique_complet LIKE 'Osmia bicolor' ) AND (localites.ville LIKE 'Kinshasa' )) ORDER BY specimens.id_specimens LIMIT 11' INFO 211 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 213 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.langue_vern, specimens.nom_vern, specimens.nom_francais, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (403)) ORDER BY specimens.id_specimens' INFO 215 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 2 WARNING 225 pywrapper.cmf ln1151 cmf_element._getChoicelessChildNodesLOL(): The mandatory child element LowerValue could not be created [0 existing, but 1 required]. The element /DataSets/DataSet/Units/Unit/MeasurementsOrFacts/MeasurementOrFact/MeasurementOrFactAtomised was also dropped. INFO 227 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.097354888916 INFO 228 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 231 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [search] 0/10 q=((v_noms_scientifiques.nom_scientifique_complet LIKE Osmia bicolor ) AND (localites.ville LIKE Kinshasa )) RecordStatus: start=0, count=1, drop=0, total=1 INFO 231 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-10 11:01:57.870383 ===== INFO 94 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 94 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 99 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 122 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 122 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 140 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 141 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 220 pywrapper.operations ln169 operations.scan(): Scan mapping localites.ville(text) INFO 221 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT localites.ville FROM specimens AS specimens LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) WHERE (v_noms_scientifiques.nom_scientifique_complet LIKE 'Palomena prasina' )' INFO 225 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 225 pywrapper.operations ln181 operations.scan(): Scan operation succeeded. INFO 226 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 228 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [scan] 0/0 q=(v_noms_scientifiques.nom_scientifique_complet LIKE Palomena prasina ) scan=/DataSets/DataSet/Units/Unit/Gathering/LocalityText RecordStatus: start=0, count=1, drop=0, total=1 INFO 228 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-10 11:02:01.075607 ===== INFO 89 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 89 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 93 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 115 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 115 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 131 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 132 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 206 pywrapper.operations ln169 operations.scan(): Scan mapping localites.ville(text) INFO 207 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT localites.ville FROM specimens AS specimens LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) WHERE (v_noms_scientifiques.nom_scientifique_complet LIKE 'Nezara viridula Linnaeus, 1758' )' INFO 212 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 212 pywrapper.operations ln181 operations.scan(): Scan operation succeeded. INFO 213 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 215 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [scan] 0/0 q=(v_noms_scientifiques.nom_scientifique_complet LIKE Nezara viridula Linnaeus, 1758 ) scan=/DataSets/DataSet/Units/Unit/Gathering/LocalityText RecordStatus: start=0, count=1, drop=0, total=1 INFO 215 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-10 11:02:05.269554 ===== INFO 87 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 87 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 92 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 113 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 113 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 127 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 128 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 200 pywrapper.operations ln169 operations.scan(): Scan mapping localites.ville(text) INFO 201 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT localites.ville FROM specimens AS specimens LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) WHERE (v_noms_scientifiques.nom_scientifique_complet LIKE 'Heliocopris sp. Hope, 1837' )' INFO 205 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 205 pywrapper.operations ln181 operations.scan(): Scan operation succeeded. INFO 205 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 206 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [scan] 0/0 q=(v_noms_scientifiques.nom_scientifique_complet LIKE Heliocopris sp. Hope, 1837 ) scan=/DataSets/DataSet/Units/Unit/Gathering/LocalityText RecordStatus: start=0, count=1, drop=0, total=1 INFO 207 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-10 11:02:14.766402 ===== INFO 91 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 91 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 96 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 116 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 117 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 131 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 131 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 204 pywrapper.operations ln169 operations.scan(): Scan mapping localites.ville(text) INFO 205 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT localites.ville FROM specimens AS specimens LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) WHERE (v_noms_scientifiques.nom_scientifique_complet LIKE 'Anopheles sp. Meigen, 1818' )' INFO 208 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 208 pywrapper.operations ln181 operations.scan(): Scan operation succeeded. INFO 209 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 210 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [scan] 0/0 q=(v_noms_scientifiques.nom_scientifique_complet LIKE Anopheles sp. Meigen, 1818 ) scan=/DataSets/DataSet/Units/Unit/Gathering/LocalityText RecordStatus: start=0, count=1, drop=0, total=1 INFO 210 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-10 11:02:31.538252 ===== INFO 90 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 90 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 94 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 115 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 115 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 129 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 130 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 203 pywrapper.operations ln169 operations.scan(): Scan mapping localites.ville(text) INFO 203 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT localites.ville FROM specimens AS specimens LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) WHERE (v_noms_scientifiques.nom_scientifique_complet LIKE 'Acrida turrita Linnaeus, 1758' )' INFO 208 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 209 pywrapper.operations ln181 operations.scan(): Scan operation succeeded. INFO 210 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 212 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [scan] 0/0 q=(v_noms_scientifiques.nom_scientifique_complet LIKE Acrida turrita Linnaeus, 1758 ) scan=/DataSets/DataSet/Units/Unit/Gathering/LocalityText RecordStatus: start=0, count=1, drop=0, total=1 INFO 212 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-10 11:02:34.983491 ===== INFO 96 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 96 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 100 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 122 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 123 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 138 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 138 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 215 pywrapper.operations ln169 operations.scan(): Scan mapping localites.ville(text) INFO 216 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT localites.ville FROM specimens AS specimens LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) WHERE (v_noms_scientifiques.nom_scientifique_complet LIKE 'Anopheles sp. Meigen, 1818' )' INFO 220 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 220 pywrapper.operations ln181 operations.scan(): Scan operation succeeded. INFO 221 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 222 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [scan] 0/0 q=(v_noms_scientifiques.nom_scientifique_complet LIKE Anopheles sp. Meigen, 1818 ) scan=/DataSets/DataSet/Units/Unit/Gathering/LocalityText RecordStatus: start=0, count=1, drop=0, total=1 INFO 222 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-10 11:02:39.582373 ===== INFO 89 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 89 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 93 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 114 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 114 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 131 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 132 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 206 pywrapper.operations ln169 operations.scan(): Scan mapping localites.ville(text) INFO 207 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT localites.ville FROM specimens AS specimens LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) WHERE (v_noms_scientifiques.nom_scientifique_complet LIKE 'Anoplocnemis curvipes Fabricius, 1781' )' INFO 211 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 212 pywrapper.operations ln181 operations.scan(): Scan operation succeeded. INFO 213 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 214 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [scan] 0/0 q=(v_noms_scientifiques.nom_scientifique_complet LIKE Anoplocnemis curvipes Fabricius, 1781 ) scan=/DataSets/DataSet/Units/Unit/Gathering/LocalityText RecordStatus: start=0, count=1, drop=0, total=1 INFO 215 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-10 11:02:42.729148 ===== INFO 89 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 89 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 93 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 115 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 115 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 130 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 131 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 203 pywrapper.operations ln169 operations.scan(): Scan mapping localites.ville(text) INFO 204 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT localites.ville FROM specimens AS specimens LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) WHERE (v_noms_scientifiques.nom_scientifique_complet LIKE 'Aristobia voeti Thomson, 1878' )' INFO 208 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 208 pywrapper.operations ln181 operations.scan(): Scan operation succeeded. INFO 208 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 209 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [scan] 0/0 q=(v_noms_scientifiques.nom_scientifique_complet LIKE Aristobia voeti Thomson, 1878 ) scan=/DataSets/DataSet/Units/Unit/Gathering/LocalityText RecordStatus: start=0, count=1, drop=0, total=1 INFO 209 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-10 11:02:45.755703 ===== INFO 87 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 88 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 92 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 113 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 113 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 127 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 127 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 200 pywrapper.operations ln169 operations.scan(): Scan mapping localites.ville(text) INFO 201 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT localites.ville FROM specimens AS specimens LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) WHERE (v_noms_scientifiques.nom_scientifique_complet LIKE 'Belostoma sp. Latreille, 1807' )' INFO 204 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 205 pywrapper.operations ln181 operations.scan(): Scan operation succeeded. INFO 205 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 206 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [scan] 0/0 q=(v_noms_scientifiques.nom_scientifique_complet LIKE Belostoma sp. Latreille, 1807 ) scan=/DataSets/DataSet/Units/Unit/Gathering/LocalityText RecordStatus: start=0, count=1, drop=0, total=1 INFO 206 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-10 11:02:48.725214 ===== INFO 88 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 88 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 93 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 113 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 114 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 128 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 129 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 201 pywrapper.operations ln169 operations.scan(): Scan mapping localites.ville(text) INFO 202 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT localites.ville FROM specimens AS specimens LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) WHERE (v_noms_scientifiques.nom_scientifique_complet LIKE 'Bemisia tabaci Gennadius, 1889' )' INFO 206 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 207 pywrapper.operations ln181 operations.scan(): Scan operation succeeded. INFO 209 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 210 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [scan] 0/0 q=(v_noms_scientifiques.nom_scientifique_complet LIKE Bemisia tabaci Gennadius, 1889 ) scan=/DataSets/DataSet/Units/Unit/Gathering/LocalityText RecordStatus: start=0, count=1, drop=0, total=1 INFO 211 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-10 11:03:02.922772 ===== INFO 88 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 88 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 94 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 117 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 118 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 134 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 135 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 212 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) WHERE (v_noms_scientifiques.nom_scientifique_complet LIKE 'Bemisia tabaci Gennadius, 1889' ) ORDER BY specimens.id_specimens LIMIT 11' INFO 215 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 217 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.langue_vern, specimens.nom_vern, specimens.nom_francais, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (900)) ORDER BY specimens.id_specimens' INFO 217 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 2 WARNING 227 pywrapper.cmf ln1151 cmf_element._getChoicelessChildNodesLOL(): The mandatory child element LowerValue could not be created [0 existing, but 1 required]. The element /DataSets/DataSet/Units/Unit/MeasurementsOrFacts/MeasurementOrFact/MeasurementOrFactAtomised was also dropped. INFO 228 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.0943160057068 INFO 230 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 233 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [search] 0/10 q=(v_noms_scientifiques.nom_scientifique_complet LIKE Bemisia tabaci Gennadius, 1889 ) RecordStatus: start=0, count=1, drop=0, total=1 INFO 233 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-10 11:03:15.868830 ===== INFO 89 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 89 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 93 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 114 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 114 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 130 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 131 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 206 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) WHERE (v_noms_scientifiques.nom_scientifique_complet LIKE 'Anoplocnemis curvipes Fabricius, 1781' ) ORDER BY specimens.id_specimens LIMIT 11' INFO 210 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 212 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.langue_vern, specimens.nom_vern, specimens.nom_francais, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (300)) ORDER BY specimens.id_specimens' INFO 215 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 2 INFO 231 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.100758075714 INFO 232 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 235 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [search] 0/10 q=(v_noms_scientifiques.nom_scientifique_complet LIKE Anoplocnemis curvipes Fabricius, 1781 ) RecordStatus: start=0, count=1, drop=0, total=1 INFO 236 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-10 11:03:19.210256 ===== INFO 88 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 89 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 93 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 114 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 115 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 129 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 129 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 203 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) WHERE (v_noms_scientifiques.nom_scientifique_complet LIKE 'Anopheles sp. Meigen, 1818' ) ORDER BY specimens.id_specimens LIMIT 11' INFO 206 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 207 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.langue_vern, specimens.nom_vern, specimens.nom_francais, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (1001)) ORDER BY specimens.id_specimens' INFO 210 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 2 WARNING 223 pywrapper.cmf ln1151 cmf_element._getChoicelessChildNodesLOL(): The mandatory child element LowerValue could not be created [0 existing, but 1 required]. The element /DataSets/DataSet/Units/Unit/MeasurementsOrFacts/MeasurementOrFact/MeasurementOrFactAtomised was also dropped. INFO 226 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.0970900058746 INFO 228 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 231 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [search] 0/10 q=(v_noms_scientifiques.nom_scientifique_complet LIKE Anopheles sp. Meigen, 1818 ) RecordStatus: start=0, count=1, drop=0, total=1 INFO 231 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-10 11:04:44.791732 ===== INFO 89 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 89 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 93 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 114 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 115 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 130 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 130 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 202 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) WHERE (v_noms_scientifiques.nom_scientifique_complet LIKE 'Blaberus giganteus Linnaeus, 1758' ) ORDER BY specimens.id_specimens LIMIT 11' INFO 205 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 206 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.langue_vern, specimens.nom_vern, specimens.nom_francais, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (201)) ORDER BY specimens.id_specimens' INFO 209 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 2 INFO 221 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.0913031101227 INFO 222 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 227 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [search] 0/10 q=(v_noms_scientifiques.nom_scientifique_complet LIKE Blaberus giganteus Linnaeus, 1758 ) RecordStatus: start=0, count=1, drop=0, total=1 INFO 228 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-10 11:04:56.462810 ===== INFO 89 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 89 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 93 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 114 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 115 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 131 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 132 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 208 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) WHERE (v_noms_scientifiques.nom_scientifique_complet LIKE 'Anopheles sp. Meigen, 1818' ) ORDER BY specimens.id_specimens LIMIT 11' INFO 212 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 215 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.langue_vern, specimens.nom_vern, specimens.nom_francais, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (1001)) ORDER BY specimens.id_specimens' INFO 215 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 2 WARNING 228 pywrapper.cmf ln1151 cmf_element._getChoicelessChildNodesLOL(): The mandatory child element LowerValue could not be created [0 existing, but 1 required]. The element /DataSets/DataSet/Units/Unit/MeasurementsOrFacts/MeasurementOrFact/MeasurementOrFactAtomised was also dropped. INFO 230 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.0990099906921 INFO 231 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 234 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [search] 0/10 q=(v_noms_scientifiques.nom_scientifique_complet LIKE Anopheles sp. Meigen, 1818 ) RecordStatus: start=0, count=1, drop=0, total=1 INFO 235 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-10 11:05:00.887633 ===== INFO 88 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 88 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 92 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 113 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 113 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 128 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 128 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 200 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) WHERE (v_noms_scientifiques.nom_scientifique_complet LIKE 'Bemisia tabaci Gennadius, 1889' ) ORDER BY specimens.id_specimens LIMIT 11' INFO 203 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 205 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.langue_vern, specimens.nom_vern, specimens.nom_francais, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (900)) ORDER BY specimens.id_specimens' INFO 205 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 2 WARNING 214 pywrapper.cmf ln1151 cmf_element._getChoicelessChildNodesLOL(): The mandatory child element LowerValue could not be created [0 existing, but 1 required]. The element /DataSets/DataSet/Units/Unit/MeasurementsOrFacts/MeasurementOrFact/MeasurementOrFactAtomised was also dropped. INFO 216 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.0881991386414 INFO 217 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 220 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [search] 0/10 q=(v_noms_scientifiques.nom_scientifique_complet LIKE Bemisia tabaci Gennadius, 1889 ) RecordStatus: start=0, count=1, drop=0, total=1 INFO 220 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-10 11:05:05.287912 ===== INFO 89 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 89 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 93 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 114 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 114 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 129 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 129 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 201 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM metadonnees_root AS metadonnees_root LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens WHERE ((metadonnees.institution_acronyme = 'UPN' ) AND (metadonnees.collection = 'Entomologie (UPN)' ) AND (specimens.id_specimens = '900' )) ORDER BY specimens.id_specimens LIMIT 11' INFO 202 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 204 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.langue_vern, specimens.nom_vern, specimens.nom_francais, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (900)) ORDER BY specimens.id_specimens' INFO 204 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 2 WARNING 214 pywrapper.cmf ln1151 cmf_element._getChoicelessChildNodesLOL(): The mandatory child element LowerValue could not be created [0 existing, but 1 required]. The element /DataSets/DataSet/Units/Unit/MeasurementsOrFacts/MeasurementOrFact/MeasurementOrFactAtomised was also dropped. INFO 215 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.086501121521 INFO 216 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 219 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [search] 0/10 q=((metadonnees.institution_acronyme = UPN ) AND (metadonnees.collection = Entomologie (UPN) ) AND (specimens.id_specimens = 900 )) RecordStatus: start=0, count=1, drop=0, total=1 INFO 219 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-10 11:05:17.715623 ===== INFO 88 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 88 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 92 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 113 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 113 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 130 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 130 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 208 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) WHERE (v_noms_scientifiques.nom_scientifique_complet LIKE 'Cirina forda Westwood, 1849' ) ORDER BY specimens.id_specimens LIMIT 11' INFO 211 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 213 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.langue_vern, specimens.nom_vern, specimens.nom_francais, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (702)) ORDER BY specimens.id_specimens' INFO 216 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 2 WARNING 226 pywrapper.cmf ln1151 cmf_element._getChoicelessChildNodesLOL(): The mandatory child element LowerValue could not be created [0 existing, but 1 required]. The element /DataSets/DataSet/Units/Unit/MeasurementsOrFacts/MeasurementOrFact/MeasurementOrFactAtomised was also dropped. INFO 228 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.0987930297852 INFO 229 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 233 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [search] 0/10 q=(v_noms_scientifiques.nom_scientifique_complet LIKE Cirina forda Westwood, 1849 ) RecordStatus: start=0, count=1, drop=0, total=1 INFO 233 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-10 11:05:19.839098 ===== INFO 88 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 88 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 92 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 113 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 113 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 129 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 130 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 207 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM metadonnees_root AS metadonnees_root LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens WHERE ((metadonnees.institution_acronyme = 'UPN' ) AND (metadonnees.collection = 'Entomologie (UPN)' ) AND (specimens.id_specimens = '702' )) ORDER BY specimens.id_specimens LIMIT 11' INFO 208 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 209 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.langue_vern, specimens.nom_vern, specimens.nom_francais, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (702)) ORDER BY specimens.id_specimens' INFO 209 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 2 WARNING 219 pywrapper.cmf ln1151 cmf_element._getChoicelessChildNodesLOL(): The mandatory child element LowerValue could not be created [0 existing, but 1 required]. The element /DataSets/DataSet/Units/Unit/MeasurementsOrFacts/MeasurementOrFact/MeasurementOrFactAtomised was also dropped. INFO 221 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.0923888683319 INFO 222 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 226 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [search] 0/10 q=((metadonnees.institution_acronyme = UPN ) AND (metadonnees.collection = Entomologie (UPN) ) AND (specimens.id_specimens = 702 )) RecordStatus: start=0, count=1, drop=0, total=1 INFO 226 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-10 11:05:48.611815 ===== INFO 89 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 89 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 93 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 114 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 114 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 129 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 129 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 201 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) WHERE (v_noms_scientifiques.nom_scientifique_complet LIKE 'Dysdercus gregaria' ) ORDER BY specimens.id_specimens LIMIT 11' INFO 204 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 206 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.langue_vern, specimens.nom_vern, specimens.nom_francais, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (303)) ORDER BY specimens.id_specimens' INFO 208 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 2 INFO 220 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.0910110473633 INFO 221 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 224 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [search] 0/10 q=(v_noms_scientifiques.nom_scientifique_complet LIKE Dysdercus gregaria ) RecordStatus: start=0, count=1, drop=0, total=1 INFO 225 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-10 11:05:52.694542 ===== INFO 89 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 89 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 94 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 115 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 115 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 130 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 131 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 204 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM metadonnees_root AS metadonnees_root LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens WHERE ((metadonnees.institution_acronyme = 'UPN' ) AND (metadonnees.collection = 'Entomologie (UPN)' ) AND (specimens.id_specimens = '303' )) ORDER BY specimens.id_specimens LIMIT 11' INFO 205 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 206 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.langue_vern, specimens.nom_vern, specimens.nom_francais, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (303)) ORDER BY specimens.id_specimens' INFO 207 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 2 INFO 218 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.0879030227661 INFO 219 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 223 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [search] 0/10 q=((metadonnees.institution_acronyme = UPN ) AND (metadonnees.collection = Entomologie (UPN) ) AND (specimens.id_specimens = 303 )) RecordStatus: start=0, count=1, drop=0, total=1 INFO 223 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-10 11:17:26.963983 ===== INFO 90 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 90 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 94 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 115 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 116 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 132 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 133 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 211 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM metadonnees_root AS metadonnees_root LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens WHERE ((metadonnees.institution_acronyme = 'UPN' ) AND (metadonnees.collection = 'Entomologie (UPN)' ) AND (specimens.id_specimens = '303' )) ORDER BY specimens.id_specimens LIMIT 11' INFO 212 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 213 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.langue_vern, specimens.nom_vern, specimens.nom_francais, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (303)) ORDER BY specimens.id_specimens' INFO 214 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 2 INFO 226 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.0943160057068 INFO 228 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 230 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [search] 0/10 q=((metadonnees.institution_acronyme = UPN ) AND (metadonnees.collection = Entomologie (UPN) ) AND (specimens.id_specimens = 303 )) RecordStatus: start=0, count=1, drop=0, total=1 INFO 231 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-10 13:55:33.151145 ===== INFO 93 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 93 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 98 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 121 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 121 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 136 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 137 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 216 pywrapper.operations ln169 operations.scan(): Scan mapping v_noms_scientifiques.nom_scientifique_complet(text) INFO 217 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT v_noms_scientifiques.nom_scientifique_complet FROM specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) WHERE (v_noms_scientifiques.nom_scientifique_complet LIKE '%' )' INFO 221 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 39 INFO 221 pywrapper.operations ln181 operations.scan(): Scan operation succeeded. INFO 222 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 224 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [scan] 0/0 q=(v_noms_scientifiques.nom_scientifique_complet LIKE * ) scan=/DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString RecordStatus: start=0, count=39, drop=0, total=39 INFO 225 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-10 13:55:45.494369 ===== INFO 90 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 90 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 94 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 115 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 115 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 132 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 133 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 211 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) WHERE ((v_noms_scientifiques.nom_scientifique_complet LIKE '%' ) AND (v_noms_scientifiques.nom_scientifique_complet LIKE 'Acrida turrita Linnaeus, 1758' )) ORDER BY specimens.id_specimens LIMIT 11' INFO 215 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 216 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.langue_vern, specimens.nom_vern, specimens.nom_francais, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (602)) ORDER BY specimens.id_specimens' INFO 217 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 2 INFO 229 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.0971021652222 INFO 230 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 234 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [search] 0/10 q=((v_noms_scientifiques.nom_scientifique_complet LIKE * ) AND (v_noms_scientifiques.nom_scientifique_complet LIKE Acrida turrita Linnaeus, 1758 )) RecordStatus: start=0, count=1, drop=0, total=1 INFO 234 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-10 13:56:19.423650 ===== INFO 89 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 89 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 93 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 114 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 115 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 130 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 130 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 204 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM metadonnees_root AS metadonnees_root LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens WHERE ((metadonnees.institution_acronyme = 'UPN' ) AND (metadonnees.collection = 'Entomologie (UPN)' ) AND (specimens.id_specimens = '602' )) ORDER BY specimens.id_specimens LIMIT 11' INFO 205 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 206 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.langue_vern, specimens.nom_vern, specimens.nom_francais, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (602)) ORDER BY specimens.id_specimens' INFO 207 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 2 INFO 219 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.0892810821533 INFO 220 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 224 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [search] 0/10 q=((metadonnees.institution_acronyme = UPN ) AND (metadonnees.collection = Entomologie (UPN) ) AND (specimens.id_specimens = 602 )) RecordStatus: start=0, count=1, drop=0, total=1 INFO 224 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-10 14:13:53.088349 ===== INFO 88 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 88 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 93 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 114 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 114 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 131 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 131 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 206 pywrapper.operations ln169 operations.scan(): Scan mapping v_noms_scientifiques.nom_scientifique_complet(text) INFO 207 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT v_noms_scientifiques.nom_scientifique_complet FROM specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) WHERE (localites.ville LIKE '%' )' INFO 211 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 31 INFO 212 pywrapper.operations ln181 operations.scan(): Scan operation succeeded. INFO 213 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 215 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [scan] 0/0 q=(localites.ville LIKE * ) scan=/DataSets/DataSet/Units/Unit/Identifications/Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString RecordStatus: start=0, count=31, drop=0, total=31 INFO 216 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-10 14:13:57.465472 ===== INFO 88 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 88 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 92 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 113 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 114 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 130 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 130 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 207 pywrapper.operations ln169 operations.scan(): Scan mapping localites.ville(text) INFO 208 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT localites.ville FROM specimens AS specimens LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) WHERE (localites.ville LIKE '%' )' INFO 209 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 209 pywrapper.operations ln181 operations.scan(): Scan operation succeeded. INFO 210 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 211 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [scan] 0/0 q=(localites.ville LIKE * ) scan=/DataSets/DataSet/Units/Unit/Gathering/LocalityText RecordStatus: start=0, count=1, drop=0, total=1 INFO 211 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-10 14:17:08.620119 ===== INFO 88 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 88 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 92 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 113 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 114 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 127 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 128 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 201 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM specimens AS specimens LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) WHERE (localites.ville LIKE '%' ) ORDER BY specimens.id_specimens LIMIT 11' INFO 202 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 11 INFO 203 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.langue_vern, specimens.nom_vern, specimens.nom_francais, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (100, 101, 102, 103, 104, 105, 106, 107, 108, 200)) ORDER BY specimens.id_specimens' INFO 209 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 22 WARNING 266 pywrapper.cmf ln1151 cmf_element._getChoicelessChildNodesLOL(): The mandatory child element LowerValue could not be created [0 existing, but 1 required]. The element /DataSets/DataSet/Units/Unit/MeasurementsOrFacts/MeasurementOrFact/MeasurementOrFactAtomised was also dropped. INFO 281 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.153465986252 INFO 283 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 293 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.1 [search] 0/10 q=(localites.ville LIKE * ) RecordStatus: start=0, count=10, drop=0, total=11 INFO 294 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-10 14:18:21.968879 ===== INFO 89 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 89 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 93 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 114 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 115 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 131 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 131 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' WARNING 206 pywrapper.operations ln191 operations.scan(): No valid xpath was given for the scan search. The concept "/DataSets/DataSet/Units/Unit/Gathering/LocalityText'" does not exist in the schema "http://www.tdwg.org/schemas/abcd/2.06" INFO 207 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 208 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.1 [scan] 0/0 q=None scan=/DataSets/DataSet/Units/Unit/Gathering/LocalityText' RecordStatus: start=0, count=0, drop=0, total=0 INFO 208 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-10 14:24:07.803652 ===== INFO 88 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 88 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 93 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 113 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 114 pywrapper.protocol ln66 base_request.init(): Unknown request type! Default to capabilities. INFO 114 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 158 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' WARNING 202 pywrapper.protocol.biocase ln93 biocase_response.postprocessMessage(): Destination hostname could not be determined INFO 203 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 205 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.53 [capabilities] RecordStatus: start=0, count=0, drop=0, total=0 INFO 206 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-10 14:24:08.117619 ===== INFO 88 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 89 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 93 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 114 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 114 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 130 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 131 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 208 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM specimens AS specimens ORDER BY specimens.id_specimens LIMIT 6' INFO 210 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 6 INFO 211 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.langue_vern, specimens.nom_vern, specimens.nom_francais, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (100, 101, 102, 103, 104)) ORDER BY specimens.id_specimens' INFO 217 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 10 INFO 258 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.128144025803 INFO 260 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 265 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.53 [search] 0/5 q=None RecordStatus: start=0, count=5, drop=0, total=6 INFO 265 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-11 13:10:08.886692 ===== INFO 93 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 93 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 97 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 119 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 119 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 134 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 134 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 209 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM metadonnees_root AS metadonnees_root LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens WHERE ((metadonnees.institution_acronyme = 'UPN' ) AND (metadonnees.collection = 'Entomologie (UPN)' ) AND (specimens.id_specimens = '602' )) ORDER BY specimens.id_specimens LIMIT 11' INFO 211 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 212 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.langue_vern, specimens.nom_vern, specimens.nom_francais, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (602)) ORDER BY specimens.id_specimens' INFO 212 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 2 INFO 225 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.0907590389252 INFO 226 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 230 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [search] 0/10 q=((metadonnees.institution_acronyme = UPN ) AND (metadonnees.collection = Entomologie (UPN) ) AND (specimens.id_specimens = 602 )) RecordStatus: start=0, count=1, drop=0, total=1 INFO 230 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-13 17:10:37.320538 ===== INFO 93 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 93 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 97 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 118 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 118 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 134 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 134 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 209 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM metadonnees_root AS metadonnees_root LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens WHERE ((metadonnees.institution_acronyme = 'UPN' ) AND (metadonnees.collection = 'Entomologie (UPN)' ) AND (specimens.id_specimens = '602' )) ORDER BY specimens.id_specimens LIMIT 11' INFO 210 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 212 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.langue_vern, specimens.nom_vern, specimens.nom_francais, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (602)) ORDER BY specimens.id_specimens' INFO 212 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 2 INFO 224 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.0898480415344 INFO 225 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 229 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [search] 0/10 q=((metadonnees.institution_acronyme = UPN ) AND (metadonnees.collection = Entomologie (UPN) ) AND (specimens.id_specimens = 602 )) RecordStatus: start=0, count=1, drop=0, total=1 INFO 229 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2012-12-13 17:10:49.425941 ===== INFO 92 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 92 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 96 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 117 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 118 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 133 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 133 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 207 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM specimens AS specimens ORDER BY specimens.id_specimens LIMIT 11' INFO 208 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 11 INFO 210 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.langue_vern, specimens.nom_vern, specimens.nom_francais, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (100, 101, 102, 103, 104, 105, 106, 107, 108, 109)) ORDER BY specimens.id_specimens' INFO 216 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 22 WARNING 275 pywrapper.cmf ln1151 cmf_element._getChoicelessChildNodesLOL(): The mandatory child element LowerValue could not be created [0 existing, but 1 required]. The element /DataSets/DataSet/Units/Unit/MeasurementsOrFacts/MeasurementOrFact/MeasurementOrFactAtomised was also dropped. WARNING 280 pywrapper.cmf ln1151 cmf_element._getChoicelessChildNodesLOL(): The mandatory child element LowerValue could not be created [0 existing, but 1 required]. The element /DataSets/DataSet/Units/Unit/MeasurementsOrFacts/MeasurementOrFact/MeasurementOrFactAtomised was also dropped. INFO 289 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.156136989594 INFO 291 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 299 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [search] 0/10 q=None RecordStatus: start=0, count=10, drop=0, total=11 INFO 299 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2013-02-04 12:45:38.278053 ===== INFO 122 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 122 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 127 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 148 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 149 pywrapper.protocol ln66 base_request.init(): Unknown request type! Default to capabilities. INFO 149 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 198 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' WARNING 246 pywrapper.protocol.biocase ln93 biocase_response.postprocessMessage(): Destination hostname could not be determined INFO 246 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 249 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 66.249.73.44 [capabilities] RecordStatus: start=0, count=0, drop=0, total=0 INFO 249 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2013-02-06 19:54:42.156536 ===== INFO 106 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 106 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 110 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 166 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 166 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 364 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 365 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 445 pywrapper.operations ln169 operations.scan(): Scan mapping specimens.id_specimens(text) INFO 457 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) WHERE (v_noms_scientifiques.nom_scientifique_complet LIKE '%' )' INFO 571 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 42 INFO 571 pywrapper.operations ln181 operations.scan(): Scan operation succeeded. INFO 572 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 574 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.55 [scan] 0/0 q=(v_noms_scientifiques.nom_scientifique_complet LIKE * ) scan=/DataSets/DataSet/Units/Unit/UnitID RecordStatus: start=0, count=42, drop=0, total=42 INFO 575 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2013-02-12 13:28:39.942990 ===== INFO 116 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 116 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 168 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 190 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 190 pywrapper.protocol ln66 base_request.init(): Unknown request type! Default to capabilities. INFO 190 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 324 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' WARNING 373 pywrapper.protocol.biocase ln93 biocase_response.postprocessMessage(): Destination hostname could not be determined INFO 374 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 376 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.53 [capabilities] RecordStatus: start=0, count=0, drop=0, total=0 INFO 376 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2013-02-12 13:28:40.417909 ===== INFO 94 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 94 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 106 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 127 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 127 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 409 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 409 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 515 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT COUNT(specimens.id_specimens) FROM specimens AS specimens' INFO 544 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 546 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 547 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.53 [count] 0/1 q=None RecordStatus: start=0, count=0, drop=0, total=0 INFO 548 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2013-02-12 13:28:41.103874 ===== INFO 105 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 105 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 110 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 134 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 134 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 153 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 154 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 239 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM specimens AS specimens ORDER BY specimens.id_specimens LIMIT 2' INFO 257 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 2 INFO 259 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT specimens.id_specimens, metadonnees_root.id, contacts_techniques.nom_prenom, contacts_techniques.mail, contacts_techniques.telephone, contacts_techniques.adresse, contacts_scientifiques.nom_prenom, contacts_scientifiques.mail, contacts_scientifiques.telephone, contacts_scientifiques.adresse, metadonnees.langue, metadonnees.titre, metadonnees.description, metadonnees.date_update, metadonnees.propriete_intellectuelle, metadonnees.url_denormalisees, metadonnees.copyrights, metadonnees.termes_d_usage, metadonnees.disclaimer, metadonnees.acknowledgments, metadonnees.citations, metadonnees.institution_acronyme, metadonnees.collection, specimens.id_specimens, v_taxon_superieur.nom_scientifique, v_taxon_superieur.rang, v_noms_scientifiques.nom_scientifique_complet, v_noms_scientifiques.genre, v_noms_scientifiques.espece, v_noms_scientifiques.auteur, v_noms_scientifiques.annee, specimens.langue_vern, specimens.nom_vern, specimens.nom_francais, specimens.date_obs, specimens.recolteur, localites.ville, localites.nompays, localites.code_pays, localites.longitude, localites.latitude, specimens.taille_cm, metadonnees_root.id, contacts_techniques.num, contacts_scientifiques.num, metadonnees.num, specimens.id_specimens, v_taxon_superieur.pk, v_noms_scientifiques.id_genre, localites.id_lieu FROM metadonnees_root AS metadonnees_root LEFT JOIN contacts_techniques AS contacts_techniques ON (contacts_techniques.fk_for_biocase = metadonnees_root.id) LEFT JOIN contacts_scientifiques AS contacts_scientifiques ON (contacts_scientifiques.fk_for_biocase = metadonnees_root.id) LEFT JOIN metadonnees AS metadonnees ON (metadonnees.fk_root = metadonnees_root.id), specimens AS specimens LEFT JOIN v_noms_scientifiques AS v_noms_scientifiques ON (v_noms_scientifiques.id_genre = specimens.fk_nom_scientifique) LEFT JOIN localites AS localites ON (localites.id_lieu = specimens.lieu_recolte) LEFT JOIN familles AS familles ON (familles.id_famille = v_noms_scientifiques.fk_famille) LEFT JOIN v_taxon_superieur AS v_taxon_superieur ON (v_taxon_superieur.key_famille = familles.id_famille) WHERE (specimens.id_specimens IN (100)) ORDER BY specimens.id_specimens' INFO 436 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 2 INFO 449 pywrapper.protocol.biocase ln110 biocase_protocol.processRequest(): time to execute request is 0.295721054077 INFO 450 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'abcd': u'http://www.tdwg.org/schemas/abcd/2.06', 'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 452 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.53 [search] 0/1 q=None RecordStatus: start=0, count=1, drop=0, total=2 INFO 453 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2013-02-12 13:28:41.669793 ===== INFO 96 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 96 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 100 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 122 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 123 pywrapper.protocol ln66 base_request.init(): Unknown request type! Default to capabilities. INFO 123 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 171 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' WARNING 222 pywrapper.protocol.biocase ln93 biocase_response.postprocessMessage(): Destination hostname could not be determined INFO 223 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 225 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.53 [capabilities] RecordStatus: start=0, count=0, drop=0, total=0 INFO 226 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2013-02-12 13:28:41.993552 ===== INFO 100 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 100 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 104 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 126 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 126 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 144 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 145 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 233 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT COUNT(specimens.id_specimens) FROM specimens AS specimens WHERE (specimens.id_specimens LIKE '%' )' INFO 260 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 1 INFO 261 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 262 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.53 [count] 0/10000000000 q=(specimens.id_specimens LIKE * ) RecordStatus: start=0, count=0, drop=0, total=0 INFO 262 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2013-02-12 13:28:42.367920 ===== INFO 95 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 95 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 100 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 122 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 122 pywrapper.protocol ln66 base_request.init(): Unknown request type! Default to capabilities. INFO 122 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 170 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' WARNING 217 pywrapper.protocol.biocase ln93 biocase_response.postprocessMessage(): Destination hostname could not be determined INFO 218 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 220 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.53 [capabilities] RecordStatus: start=0, count=0, drop=0, total=0 INFO 221 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2013-02-12 13:28:42.748399 ===== INFO 95 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 95 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 99 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 120 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 121 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 138 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 139 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 219 pywrapper.operations ln169 operations.scan(): Scan mapping specimens.id_specimens(text) INFO 220 pywrapper.dbmod.mysql ln70 dbmod_mysql.execSQL(): Executing SQL: 'SELECT DISTINCT specimens.id_specimens FROM specimens AS specimens WHERE (specimens.id_specimens LIKE '%' )' INFO 254 pywrapper.dbmod.mysql ln84 dbmod_mysql.execSQL(): Hits: 42 INFO 255 pywrapper.operations ln181 operations.scan(): Scan operation succeeded. INFO 256 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 257 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.53 [scan] 0/0 q=(specimens.id_specimens LIKE * ) scan=/DataSets/DataSet/Units/Unit/UnitID RecordStatus: start=0, count=42, drop=0, total=42 INFO 257 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2013-02-12 13:28:43.210572 ===== INFO 93 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 93 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 97 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 119 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 120 pywrapper.protocol ln66 base_request.init(): Unknown request type! Default to capabilities. INFO 120 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 168 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' WARNING 219 pywrapper.protocol.biocase ln93 biocase_response.postprocessMessage(): Destination hostname could not be determined INFO 219 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 222 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.53 [capabilities] RecordStatus: start=0, count=0, drop=0, total=0 INFO 222 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2013-02-12 13:28:43.522214 ===== INFO 95 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 95 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 99 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 121 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 121 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 137 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 137 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' ERROR 217 pywrapper.errors ln28 errorclasses.log(): The requested concept /DataSets/DataSet/Units/Unit/MultiMediaObjects/MultiMediaObject/FileURI is not searchable for this provider! Please do a capabilities request to see all searchable concepts None INFO 218 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 219 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.53 [count] 0/10000000000 q=False RecordStatus: start=0, count=0, drop=0, total=0 INFO 219 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2013-02-12 13:28:43.863072 ===== INFO 95 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 95 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 100 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 121 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 122 pywrapper.protocol ln66 base_request.init(): Unknown request type! Default to capabilities. INFO 122 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 169 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' WARNING 218 pywrapper.protocol.biocase ln93 biocase_response.postprocessMessage(): Destination hostname could not be determined INFO 218 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 220 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.53 [capabilities] RecordStatus: start=0, count=0, drop=0, total=0 INFO 221 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2013-02-12 13:28:44.171181 ===== INFO 95 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 95 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 99 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 120 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 121 pywrapper.protocol.biocase ln67 biocase_request.getRequestHashFromCGI(): HTTP parameter 'query' used for building the request. INFO 136 pywrapper.psf ln160 psf.getCMFfilename(): Try to get CMF for namespace http://www.tdwg.org/schemas/abcd/2.06 INFO 136 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' ERROR 216 pywrapper.errors ln28 errorclasses.log(): The requested concept /DataSets/DataSet/Units/Unit/MultiMediaObjects/MultiMediaObject/FileURI is not searchable for this provider! Please do a capabilities request to see all searchable concepts None INFO 216 pywrapper.operations ln156 operations.scan(): The filter evaluated to False. No results without querying the db INFO 217 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 218 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 193.190.223.53 [scan] 0/0 q=False scan=/DataSets/DataSet/Units/Unit/MultiMediaObjects/MultiMediaObject/FileURI RecordStatus: start=0, count=0, drop=0, total=0 INFO 218 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2013-03-02 20:19:22.184113 ===== INFO 116 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 116 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 138 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 159 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 160 pywrapper.protocol ln66 base_request.init(): Unknown request type! Default to capabilities. INFO 160 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 242 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' WARNING 291 pywrapper.protocol.biocase ln93 biocase_response.postprocessMessage(): Destination hostname could not be determined INFO 292 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 295 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 66.249.76.156 [capabilities] RecordStatus: start=0, count=0, drop=0, total=0 INFO 295 pywrapper ln261 pywrapper.(): PyWrapper response successful ===== NEW PYWRAPPER REQUEST 2013-03-04 13:49:36.120866 ===== INFO 95 pywrapper ln99 pywrapper._readDatasource(): Datasource wrapper cabin_upn_entomologie requested INFO 102 pywrapper.psf ln105 psf.readPSFile(): Reading PSF from /var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml DEBUG 107 pywrapper.psf ln111 psf.readPSFile(): PSF: PSF=/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/provider_setup_file.xml, recLimit=500, loglevel=20, user=biocase, database=cabin_upn_nsevolo_public, dbIP=localhost, dbms=mysql, encoding=cp1252, schemas={u'http://www.tdwg.org/schemas/abcd/2.06': }, tablegraph=GRAPH: graph: contacts_scientifiques-metadonnees_root, contacts_techniques-metadonnees_root, familles-ordres, metadonnees-metadonnees_root, specimens-localites, specimens-v_noms_scientifiques, v_noms_scientifiques-familles, v_taxon_superieur-familles, +++ ALIAS2TABLE: {u'contacts_techniques': u'contacts_techniques', u'contacts_scientifiques': u'contacts_scientifiques', u'localites': u'localites', u'v_taxon_superieur': u'v_taxon_superieur', u'metadonnees_root': u'metadonnees_root', u'v_noms_scientifiques': u'v_noms_scientifiques', u'familles': u'familles', u'metadonnees': u'metadonnees', u'specimens': u'specimens', u'ordres': u'ordres'} INFO 127 pywrapper.protocol.biocase ln33 biocase_protocol.__init__(): BioCASe protocol used. INFO 128 pywrapper.protocol ln66 base_request.init(): Unknown request type! Default to capabilities. INFO 128 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' INFO 178 pywrapper.cmf ln205 cmf_base.loadCMFdata(): Load CMFile '/var/www/provider_software_3.1/config/datasources/cabin_upn_entomologie/cmf_ABCD_2.06.xml' WARNING 227 pywrapper.protocol.biocase ln93 biocase_response.postprocessMessage(): Destination hostname could not be determined INFO 228 lib.tools.xml ln181 xmlutils.cleanupNamespaces(): Namespace prefixes to be assigned: {'biocase': u'http://www.biocase.org/schemas/protocol/1.3', 'xsi': 'http://www.w3.org/2001/XMLSchema-instance'} INFO 230 pywrapper.protocol.request ln97 base_protocol.logRequest(): CABIN_UPN_ENTOMOLOGIE [BioCASe] 173.199.114.83 [capabilities] RecordStatus: start=0, count=0, drop=0, total=0 INFO 231 pywrapper ln261 pywrapper.(): PyWrapper response successful